AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30851


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30851.t1 MTR_6g465690 88.158 228 23 2 2 226 1 227 2.79e-142 398
MS.gene30851.t1 MTR_6g466000 76.526 213 36 2 27 229 19 227 5.10e-115 328
MS.gene30851.t1 MTR_6g465450 72.273 220 51 4 4 221 1 212 5.40e-107 308
MS.gene30851.t1 MTR_6g465420 68.493 219 60 2 4 221 1 211 2.76e-102 297
MS.gene30851.t1 MTR_6g465460 75.410 183 43 2 40 221 29 210 2.29e-101 295
MS.gene30851.t1 MTR_6g465430 75.135 185 45 1 38 221 27 211 3.89e-100 291
MS.gene30851.t1 MTR_6g466130 73.558 208 49 3 24 229 25 228 5.04e-99 288
MS.gene30851.t1 MTR_6g465530 70.854 199 47 3 37 229 5 198 4.61e-93 271
MS.gene30851.t1 MTR_6g465510 70.673 208 42 3 37 229 5 208 2.15e-92 270
MS.gene30851.t1 MTR_6g465990 65.278 216 41 3 24 229 2 193 1.40e-86 254
MS.gene30851.t1 MTR_6g465850 55.159 252 53 4 34 229 32 279 5.94e-79 238
MS.gene30851.t1 MTR_1g101600 64.767 193 63 2 37 229 13 200 3.16e-77 231
MS.gene30851.t1 MTR_6g466020 58.621 203 60 3 24 226 2 180 4.37e-68 207
MS.gene30851.t1 MTR_5g010930 46.154 208 87 6 40 229 24 224 2.25e-53 171
MS.gene30851.t1 MTR_5g010940 41.850 227 107 5 20 229 9 227 3.88e-51 166
MS.gene30851.t1 MTR_4g102660 51.942 206 83 8 37 229 16 218 8.15e-51 165
MS.gene30851.t1 MTR_5g010910 41.778 225 105 6 23 229 6 222 3.21e-48 158
MS.gene30851.t1 MTR_3g110205 58.333 96 40 0 60 155 38 133 9.79e-34 120
MS.gene30851.t1 MTR_8g006410 67.949 78 25 0 62 139 49 126 1.02e-33 120
MS.gene30851.t1 MTR_7g046260 66.667 81 27 0 59 139 55 135 2.34e-33 120
MS.gene30851.t1 MTR_7g117690 63.750 80 29 0 60 139 23 102 2.84e-31 113
MS.gene30851.t1 MTR_5g012910 63.291 79 29 0 61 139 24 102 1.07e-30 112
MS.gene30851.t1 MTR_2g085015 40.964 166 71 5 59 199 41 204 1.66e-30 112
MS.gene30851.t1 MTR_2g101340 53.465 101 41 2 45 139 15 115 5.44e-30 110
MS.gene30851.t1 MTR_8g102800 55.556 99 44 0 55 153 27 125 3.21e-29 109
MS.gene30851.t1 MTR_8g013860 54.639 97 43 1 44 139 25 121 5.58e-29 108
MS.gene30851.t1 MTR_6g088405 60.256 78 31 0 62 139 41 118 5.27e-28 106
MS.gene30851.t1 MTR_8g027465 54.000 100 40 2 43 139 20 116 5.74e-28 104
MS.gene30851.t1 MTR_4g102670 40.571 175 80 6 61 229 11 167 4.59e-27 102
MS.gene30851.t1 MTR_4g100650 60.256 78 31 0 62 139 71 148 4.48e-26 102
MS.gene30851.t1 MTR_6g088425 49.123 114 48 1 43 146 17 130 4.93e-24 96.3
MS.gene30851.t1 MTR_4g035430 46.429 112 53 2 35 146 9 113 1.14e-23 94.7
MS.gene30851.t1 MTR_1g006660 60.759 79 31 0 61 139 43 121 8.57e-22 90.9
MS.gene30851.t1 MTR_5g008550 48.000 100 50 1 65 162 21 120 1.35e-20 86.3
MS.gene30851.t1 MTR_5g008590 36.364 176 100 3 65 228 11 186 3.45e-19 82.0
MS.gene30851.t1 MTR_1g014780 33.548 155 89 3 34 175 1 154 7.38e-19 82.4
MS.gene30851.t1 MTR_2g435590 37.795 127 77 1 9 135 42 166 2.12e-18 81.6
MS.gene30851.t1 MTR_1g014820 34.884 129 73 3 64 183 26 152 4.38e-17 78.2
MS.gene30851.t1 MTR_3g102100 58.929 56 23 0 65 120 45 100 5.03e-17 76.3
MS.gene30851.t1 MTR_1g101550 36.571 175 100 3 65 229 57 230 7.97e-17 77.0
MS.gene30851.t1 MTR_5g083340 60.345 58 23 0 65 122 85 142 8.26e-17 79.0
MS.gene30851.t1 MTR_5g008470 44.048 84 47 0 67 150 77 160 9.79e-17 75.5
MS.gene30851.t1 MTR_1g060910 33.140 172 70 6 49 199 3 150 1.12e-16 75.1
MS.gene30851.t1 MTR_1g090170 43.820 89 44 1 60 148 147 229 2.16e-16 77.0
MS.gene30851.t1 MTR_2g043050 44.706 85 47 0 64 148 18 102 2.40e-16 75.1
MS.gene30851.t1 MTR_1g014860 31.387 137 85 2 60 187 17 153 3.14e-16 75.1
MS.gene30851.t1 MTR_5g062700 57.627 59 25 0 64 122 172 230 4.65e-16 76.6
MS.gene30851.t1 MTR_1g019110 43.333 90 43 1 65 146 44 133 4.83e-16 73.6
MS.gene30851.t1 MTR_1g090170 43.820 89 44 1 60 148 234 316 4.90e-16 76.6
MS.gene30851.t1 MTR_3g074130 59.649 57 23 0 64 120 149 205 5.37e-16 75.9
MS.gene30851.t1 MTR_2g105380 43.333 90 46 1 53 137 105 194 5.69e-16 76.3
MS.gene30851.t1 MTR_7g020980 54.688 64 28 1 58 120 43 106 6.20e-16 73.2
MS.gene30851.t1 MTR_8g090350 47.368 76 37 1 64 136 112 187 9.27e-16 74.7
MS.gene30851.t1 MTR_2g090235 57.627 59 25 0 64 122 217 275 9.45e-16 75.9
MS.gene30851.t1 MTR_3g105510 41.860 86 46 1 65 146 37 122 1.52e-15 73.6
MS.gene30851.t1 MTR_7g021010 54.688 64 28 1 58 120 43 106 1.57e-15 72.0
MS.gene30851.t1 MTR_1g074310 59.649 57 22 1 65 120 21 77 1.58e-15 71.2
MS.gene30851.t1 MTR_4g086220 58.929 56 23 0 65 120 96 151 1.89e-15 73.2
MS.gene30851.t1 MTR_8g092460 53.333 60 28 0 65 124 145 204 3.16e-15 73.6
MS.gene30851.t1 MTR_7g021010 53.333 60 28 0 61 120 8 67 3.50e-15 70.1
MS.gene30851.t1 MTR_2g043030 40.659 91 54 0 64 154 18 108 3.53e-15 71.6
MS.gene30851.t1 MTR_5g016750 55.357 56 25 0 65 120 25 80 3.60e-15 71.2
MS.gene30851.t1 MTR_4g086165 43.158 95 46 1 26 120 51 137 4.25e-15 71.6
MS.gene30851.t1 MTR_2g089170 58.929 56 23 0 65 120 65 120 4.25e-15 71.2
MS.gene30851.t1 MTR_3g053690 56.667 60 26 0 61 120 23 82 4.29e-15 72.0
MS.gene30851.t1 MTR_8g022820 43.902 82 43 1 55 136 113 191 4.59e-15 73.6
MS.gene30851.t1 MTR_8g022820 43.902 82 43 1 55 136 114 192 4.75e-15 73.6
MS.gene30851.t1 MTR_8g022820 43.902 82 43 1 55 136 114 192 4.75e-15 73.6
MS.gene30851.t1 MTR_2g078680 58.929 56 23 0 65 120 31 86 4.78e-15 71.6
MS.gene30851.t1 MTR_1g014800 51.667 60 29 0 64 123 30 89 4.79e-15 71.6
MS.gene30851.t1 MTR_1g087920 47.059 68 36 0 55 122 67 134 5.08e-15 72.8
MS.gene30851.t1 MTR_4g086160 57.143 56 24 0 65 120 96 151 5.64e-15 71.6
MS.gene30851.t1 MTR_4g086190 57.143 56 24 0 65 120 96 151 6.69e-15 71.6
MS.gene30851.t1 MTR_5g082950 60.714 56 22 0 65 120 66 121 7.42e-15 72.8
MS.gene30851.t1 MTR_1g028560 42.683 82 42 1 65 146 115 191 7.84e-15 72.8
MS.gene30851.t1 MTR_5g083330 49.315 73 37 0 50 122 20 92 1.16e-14 72.0
MS.gene30851.t1 MTR_0939s0010 57.143 56 24 0 65 120 65 120 1.61e-14 70.1
MS.gene30851.t1 MTR_7g092190 58.929 56 23 0 65 120 30 85 2.48e-14 70.9
MS.gene30851.t1 MTR_7g028925 53.333 60 25 1 64 123 28 84 2.67e-14 66.6
MS.gene30851.t1 MTR_3g105480 41.667 84 45 1 67 146 33 116 3.60e-14 69.7
MS.gene30851.t1 MTR_2g438180 57.627 59 24 1 65 122 14 72 4.55e-14 67.0
MS.gene30851.t1 MTR_2g015050 49.275 69 34 1 53 120 122 190 6.25e-14 69.7
MS.gene30851.t1 MTR_5g009620 49.333 75 28 2 52 120 97 167 7.15e-14 69.7
MS.gene30851.t1 MTR_4g078710 55.357 56 25 0 65 120 28 83 8.38e-14 68.6
MS.gene30851.t1 MTR_3g090760 39.560 91 46 1 41 131 98 179 1.25e-13 69.3
MS.gene30851.t1 MTR_1g048610 37.500 104 62 2 18 120 44 145 1.38e-13 68.2
MS.gene30851.t1 MTR_1g070070 54.386 57 25 1 65 120 21 77 1.39e-13 66.2
MS.gene30851.t1 MTR_4g100450 43.373 83 46 1 39 120 128 210 1.59e-13 68.9
MS.gene30851.t1 MTR_2g014340 55.357 56 25 0 65 120 19 74 2.05e-13 67.0
MS.gene30851.t1 MTR_3g106290 58.929 56 23 0 65 120 8 63 2.17e-13 66.6
MS.gene30851.t1 MTR_4g008860 58.929 56 23 0 65 120 8 63 2.41e-13 66.6
MS.gene30851.t1 MTR_2g043020 38.710 93 57 0 64 156 18 110 2.97e-13 66.6
MS.gene30851.t1 MTR_1g074230 56.140 57 24 1 65 120 19 75 3.14e-13 65.1
MS.gene30851.t1 MTR_1g074250 52.459 61 27 1 62 120 16 76 3.58e-13 64.7
MS.gene30851.t1 MTR_2g043040 40.000 85 51 0 64 148 18 102 3.82e-13 66.6
MS.gene30851.t1 MTR_2g014300 57.143 56 24 0 65 120 15 70 4.12e-13 65.5
MS.gene30851.t1 MTR_4g114570 53.571 56 26 0 65 120 7 62 6.90e-13 65.9
MS.gene30851.t1 MTR_5g085100 41.667 96 47 2 25 120 15 101 8.11e-13 66.6
MS.gene30851.t1 MTR_4g100420 43.373 83 46 1 39 120 131 213 9.79e-13 66.6
MS.gene30851.t1 MTR_4g010640 53.571 56 26 0 65 120 7 62 9.97e-13 65.5
MS.gene30851.t1 MTR_3g072610 39.815 108 61 2 46 149 6 113 2.03e-12 64.7
MS.gene30851.t1 MTR_2g016730 38.614 101 56 2 43 143 2 96 2.74e-12 65.5
MS.gene30851.t1 MTR_2g103700 51.786 56 27 0 65 120 7 62 3.40e-12 63.2
MS.gene30851.t1 MTR_8g099215 39.785 93 50 1 34 120 70 162 3.74e-12 64.7
MS.gene30851.t1 MTR_1g090290 50.000 62 28 2 60 120 110 169 5.10e-12 63.2
MS.gene30851.t1 MTR_5g085070 53.571 56 26 0 65 120 51 106 6.48e-12 63.9
MS.gene30851.t1 MTR_4g054360 47.692 65 33 1 57 120 116 180 7.34e-12 63.5
MS.gene30851.t1 MTR_5g075570 46.667 60 32 0 61 120 120 179 1.36e-11 63.2
MS.gene30851.t1 MTR_4g088005 52.632 57 26 1 65 120 57 113 1.42e-11 60.1
MS.gene30851.t1 MTR_6g012970 39.326 89 46 1 32 120 13 93 1.42e-11 63.5
MS.gene30851.t1 MTR_8g069360 51.786 56 27 0 65 120 44 99 1.46e-11 63.5
MS.gene30851.t1 MTR_4g054740 46.154 65 34 1 57 120 89 153 2.54e-11 61.6
MS.gene30851.t1 MTR_8g006840 50.877 57 27 1 65 120 125 181 2.70e-11 61.2
MS.gene30851.t1 MTR_6g029180 45.833 72 38 1 50 121 19 89 3.04e-11 62.4
MS.gene30851.t1 MTR_5g032820 52.632 57 27 0 65 121 46 102 3.04e-11 62.4
MS.gene30851.t1 MTR_4g100380 54.386 57 25 1 65 120 145 201 4.54e-11 61.2
MS.gene30851.t1 MTR_8g032610 49.123 57 29 0 65 121 27 83 5.14e-11 61.6
MS.gene30851.t1 MTR_7g085810 50.000 56 28 0 65 120 30 85 5.49e-11 61.2
MS.gene30851.t1 MTR_2g015040 50.877 57 27 1 65 120 63 119 7.32e-11 58.9
MS.gene30851.t1 MTR_1g070020 45.588 68 36 1 55 121 60 127 7.65e-11 60.1
MS.gene30851.t1 MTR_3g095190 55.714 70 30 1 65 133 170 239 7.87e-11 61.2
MS.gene30851.t1 MTR_6g041970 39.560 91 42 1 65 155 18 95 8.21e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30851.t1 AT4G25470 55.102 196 73 3 42 229 28 216 2.72e-67 206
MS.gene30851.t1 AT4G25480 56.186 194 72 3 43 229 29 216 8.25e-64 197
MS.gene30851.t1 AT5G51990 51.000 200 78 4 42 229 31 222 1.31e-62 195
MS.gene30851.t1 AT4G25490 56.633 196 68 4 43 229 26 213 1.86e-60 189
MS.gene30851.t1 AT1G63030 48.980 196 83 3 36 229 1 181 5.35e-59 184
MS.gene30851.t1 AT1G63030 48.980 196 83 3 36 229 1 181 5.35e-59 184
MS.gene30851.t1 AT1G12610 66.379 116 39 0 36 151 1 116 3.09e-55 176
MS.gene30851.t1 AT5G25810 62.791 86 32 0 61 146 32 117 7.65e-34 121
MS.gene30851.t1 AT5G11590 57.143 98 39 1 49 146 38 132 4.93e-32 117
MS.gene30851.t1 AT4G32800 51.402 107 46 1 52 152 6 112 6.13e-32 116
MS.gene30851.t1 AT2G44940 61.290 93 36 0 54 146 89 181 9.76e-32 117
MS.gene30851.t1 AT2G35700 48.551 138 63 2 60 194 40 172 1.48e-31 114
MS.gene30851.t1 AT3G16280 60.759 79 31 0 61 139 57 135 2.44e-28 107
MS.gene30851.t1 AT4G16750 59.259 81 33 0 60 140 35 115 2.84e-28 105
MS.gene30851.t1 AT3G16280 60.759 79 31 0 61 139 75 153 3.71e-28 107
MS.gene30851.t1 AT1G01250 50.467 107 50 1 36 139 13 119 4.23e-28 105
MS.gene30851.t1 AT2G36450 40.104 192 89 6 53 229 3 183 5.11e-27 102
MS.gene30851.t1 AT3G60490 61.333 75 29 0 65 139 71 145 2.16e-26 102
MS.gene30851.t1 AT2G25820 61.842 76 29 0 64 139 25 100 2.18e-26 102
MS.gene30851.t1 AT5G52020 40.113 177 92 5 61 229 61 231 2.67e-25 99.4
MS.gene30851.t1 AT1G71450 44.068 118 57 1 65 173 24 141 3.86e-22 90.1
MS.gene30851.t1 AT2G47520 44.330 97 50 1 24 120 13 105 5.12e-21 86.7
MS.gene30851.t1 AT1G77200 46.218 119 61 2 21 139 2 117 1.14e-19 84.7
MS.gene30851.t1 AT1G21910 47.826 92 41 1 65 149 50 141 1.61e-19 84.0
MS.gene30851.t1 AT4G13620 41.860 129 59 4 7 122 164 289 6.96e-19 84.7
MS.gene30851.t1 AT3G16770 53.846 78 29 1 45 122 66 136 1.54e-18 82.0
MS.gene30851.t1 AT1G33760 35.673 171 94 3 65 228 20 181 2.08e-18 80.1
MS.gene30851.t1 AT1G46768 57.143 63 26 1 60 122 27 88 2.19e-18 79.0
MS.gene30851.t1 AT1G46768 57.143 63 26 1 60 122 27 88 2.55e-18 79.0
MS.gene30851.t1 AT1G46768 57.143 63 26 1 60 122 27 88 2.55e-18 79.0
MS.gene30851.t1 AT1G12630 39.791 191 80 7 61 229 15 192 1.47e-17 78.2
MS.gene30851.t1 AT4G39780 57.377 61 26 0 60 120 88 148 1.59e-17 79.3
MS.gene30851.t1 AT5G21960 46.429 84 45 0 63 146 5 88 1.69e-17 78.6
MS.gene30851.t1 AT1G74930 44.186 86 48 0 65 150 21 106 2.41e-17 77.4
MS.gene30851.t1 AT1G19210 33.544 158 87 2 65 222 12 151 2.55e-17 77.4
MS.gene30851.t1 AT1G22190 59.322 59 24 0 64 122 82 140 2.98e-17 78.6
MS.gene30851.t1 AT3G50260 34.646 127 71 3 65 191 21 135 5.94e-17 75.5
MS.gene30851.t1 AT2G33710 49.367 79 35 1 60 133 65 143 7.16e-17 76.6
MS.gene30851.t1 AT2G33710 49.367 79 35 1 60 133 65 143 7.34e-17 77.0
MS.gene30851.t1 AT4G06746 51.613 62 30 0 65 126 36 97 1.10e-16 74.7
MS.gene30851.t1 AT4G28140 46.914 81 38 1 47 122 120 200 1.22e-16 77.4
MS.gene30851.t1 AT2G22200 57.627 59 25 0 64 122 70 128 1.48e-16 76.6
MS.gene30851.t1 AT4G36900 55.000 60 27 0 61 120 26 85 2.76e-16 74.7
MS.gene30851.t1 AT1G78080 57.627 59 25 0 64 122 151 209 3.94e-16 76.3
MS.gene30851.t1 AT2G23340 57.143 56 24 0 65 120 28 83 4.47e-16 73.6
MS.gene30851.t1 AT5G67190 55.357 56 25 0 65 120 21 76 5.71e-16 73.6
MS.gene30851.t1 AT2G20880 34.586 133 80 2 41 173 165 290 6.59e-16 75.9
MS.gene30851.t1 AT3G11020 54.545 66 30 0 59 124 72 137 8.56e-16 75.5
MS.gene30851.t1 AT3G57600 58.929 56 23 0 65 120 28 83 1.03e-15 74.7
MS.gene30851.t1 AT1G36060 59.649 57 23 0 64 120 142 198 1.13e-15 75.1
MS.gene30851.t1 AT5G05410 57.627 59 25 0 65 123 79 137 1.17e-15 74.7
MS.gene30851.t1 AT5G65130 44.211 95 41 2 40 122 74 168 1.34e-15 74.3
MS.gene30851.t1 AT5G65130 44.211 95 41 2 40 122 76 170 1.50e-15 74.3
MS.gene30851.t1 AT5G05410 58.929 56 23 0 65 120 79 134 1.65e-15 74.7
MS.gene30851.t1 AT5G13330 50.685 73 31 2 61 133 37 104 5.00e-15 71.6
MS.gene30851.t1 AT3G15210 58.929 56 23 0 65 120 25 80 7.20e-15 71.2
MS.gene30851.t1 AT1G71520 33.333 147 72 5 59 193 8 140 8.01e-15 69.7
MS.gene30851.t1 AT5G44210 57.143 56 24 0 65 120 33 88 1.51e-14 70.1
MS.gene30851.t1 AT5G61890 55.000 60 25 1 61 120 88 145 1.59e-14 70.9
MS.gene30851.t1 AT3G23230 56.140 57 24 1 65 120 20 76 1.78e-14 68.6
MS.gene30851.t1 AT1G72360 50.000 66 30 1 55 120 18 80 1.93e-14 70.1
MS.gene30851.t1 AT5G07580 39.370 127 69 4 16 136 58 182 2.47e-14 69.7
MS.gene30851.t1 AT3G61630 35.211 142 80 3 65 196 105 244 2.97e-14 70.9
MS.gene30851.t1 AT4G11140 39.785 93 43 2 65 150 87 173 3.50e-14 70.5
MS.gene30851.t1 AT5G64750 39.394 99 54 2 75 173 195 287 3.67e-14 71.2
MS.gene30851.t1 AT1G72360 50.000 68 30 2 53 120 66 129 3.90e-14 70.1
MS.gene30851.t1 AT1G72360 50.000 68 30 2 53 120 68 131 3.91e-14 70.1
MS.gene30851.t1 AT1G03800 35.294 102 66 0 19 120 7 108 4.22e-14 69.7
MS.gene30851.t1 AT4G27950 55.357 56 25 0 65 120 118 173 4.76e-14 70.5
MS.gene30851.t1 AT1G22810 39.785 93 41 2 65 149 14 99 5.17e-14 67.4
MS.gene30851.t1 AT5G51190 53.846 65 29 1 57 120 64 128 5.43e-14 68.9
MS.gene30851.t1 AT5G18450 55.172 58 26 0 64 121 33 90 9.16e-14 69.3
MS.gene30851.t1 AT1G75490 38.835 103 62 1 34 135 10 112 9.78e-14 68.2
MS.gene30851.t1 AT5G47230 54.688 64 26 2 58 120 151 212 1.01e-13 69.3
MS.gene30851.t1 AT5G61600 57.377 61 23 2 61 120 86 144 1.28e-13 68.2
MS.gene30851.t1 AT5G43410 53.333 60 27 1 62 120 12 71 1.68e-13 65.9
MS.gene30851.t1 AT2G46310 32.576 132 82 3 65 193 99 226 2.23e-13 68.2
MS.gene30851.t1 AT1G15360 55.357 56 25 0 65 120 7 62 3.16e-13 66.6
MS.gene30851.t1 AT1G15360 55.357 56 25 0 65 120 7 62 3.16e-13 66.6
MS.gene30851.t1 AT4G31060 50.000 56 28 0 65 120 27 82 3.73e-13 66.2
MS.gene30851.t1 AT5G19790 47.436 78 37 2 46 122 5 79 3.77e-13 67.0
MS.gene30851.t1 AT5G25390 53.571 56 26 0 65 120 7 62 3.86e-13 66.2
MS.gene30851.t1 AT5G53290 40.909 88 51 1 34 121 95 181 4.57e-13 67.8
MS.gene30851.t1 AT3G20310 52.459 61 29 0 60 120 22 82 6.11e-13 66.6
MS.gene30851.t1 AT5G25190 57.143 56 24 0 65 120 8 63 9.00e-13 64.7
MS.gene30851.t1 AT1G28360 57.143 56 24 0 65 120 12 67 1.29e-12 64.7
MS.gene30851.t1 AT4G17490 53.125 64 27 2 58 120 132 193 1.30e-12 65.9
MS.gene30851.t1 AT1G28370 53.571 56 26 0 65 120 20 75 1.34e-12 63.9
MS.gene30851.t1 AT4G23750 50.877 57 28 0 65 121 122 178 2.36e-12 65.9
MS.gene30851.t1 AT4G23750 50.877 57 28 0 65 121 122 178 2.36e-12 65.9
MS.gene30851.t1 AT1G28370 53.571 56 26 0 65 120 58 113 2.82e-12 63.9
MS.gene30851.t1 AT1G50640 55.357 56 25 0 65 120 28 83 2.91e-12 64.3
MS.gene30851.t1 AT2G40340 51.786 56 27 0 65 120 14 69 3.68e-12 64.7
MS.gene30851.t1 AT2G40340 51.786 56 27 0 65 120 14 69 3.68e-12 64.7
MS.gene30851.t1 AT2G40340 51.786 56 27 0 65 120 14 69 3.68e-12 64.7
MS.gene30851.t1 AT1G12890 43.590 78 41 1 43 120 2 76 4.52e-12 63.5
MS.gene30851.t1 AT5G47220 54.386 57 25 1 65 120 117 173 4.66e-12 63.9
MS.gene30851.t1 AT1G77640 47.778 90 41 2 65 148 43 132 5.00e-12 63.9
MS.gene30851.t1 AT2G40340 51.786 56 27 0 65 120 72 127 5.43e-12 64.3
MS.gene30851.t1 AT2G40340 51.786 56 27 0 65 120 72 127 7.37e-12 64.3
MS.gene30851.t1 AT2G40340 51.786 56 27 0 65 120 79 134 7.85e-12 64.3
MS.gene30851.t1 AT5G61590 48.276 87 42 2 51 136 95 179 2.33e-11 61.2
MS.gene30851.t1 AT2G40350 44.444 72 33 1 65 136 74 138 2.95e-11 60.5
MS.gene30851.t1 AT4G17500 54.386 57 25 1 65 120 148 204 3.29e-11 62.0
MS.gene30851.t1 AT3G23240 48.276 58 29 1 65 121 82 139 3.64e-11 61.2
MS.gene30851.t1 AT2G40350 44.444 72 33 1 65 136 67 131 3.89e-11 60.1
MS.gene30851.t1 AT1G12980 53.571 56 26 0 65 120 57 112 4.85e-11 62.0
MS.gene30851.t1 AT5G07310 53.125 64 28 1 61 124 90 151 5.34e-11 61.2
MS.gene30851.t1 AT1G24590 52.632 57 27 0 65 121 58 114 8.01e-11 61.2

Find 72 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAACTCTCGGTGGAATT+TGG 0.218037 6.2:+58632142 None:intergenic
TTCCTCCCAGCACGCTTCTT+TGG 0.236811 6.2:+58632052 None:intergenic
GGAAGAGGAACTTAGATAAA+TGG 0.256718 6.2:-58631988 MS.gene30851:CDS
CAAATCTTAGTCTTCTTGTT+TGG 0.292823 6.2:+58631947 None:intergenic
GCCAGAGTTGTTGAGGAATA+TGG 0.301561 6.2:-58631633 MS.gene30851:CDS
ACCTCTTCATCTTGAAAATC+TGG 0.311282 6.2:+58631545 None:intergenic
GCCTGAGTGGTGGCAGGTAC+AGG 0.317511 6.2:+58631812 None:intergenic
GACTCGCCACCCGGTATATA+GGG 0.321867 6.2:-58632017 MS.gene30851:CDS
AGACTCGCCACCCGGTATAT+AGG 0.350439 6.2:-58632018 MS.gene30851:CDS
CGGTGGAATTTGGAGAAAAC+TGG 0.366649 6.2:+58632152 None:intergenic
TGCGAATTCAGAGGGCTCTC+AGG 0.415939 6.2:-58632119 MS.gene30851:CDS
CAAACAAGAAGACTAAGATT+TGG 0.423028 6.2:-58631946 MS.gene30851:CDS
GAAGAGGAACTTAGATAAAT+GGG 0.434368 6.2:-58631987 MS.gene30851:CDS
TGCTGGGAGGAAGAAGTTCC+AGG 0.438027 6.2:-58632041 MS.gene30851:CDS
ATGTCTCCTACACATAGCTT+TGG 0.439535 6.2:-58631605 MS.gene30851:CDS
TGTCTCCTACACATAGCTTT+GGG 0.457669 6.2:-58631604 MS.gene30851:CDS
CGCAGCAACATCATGTGCTC+GGG 0.465490 6.2:+58631892 None:intergenic
ATACCGGGTGGCGAGTCTCC+TGG 0.468976 6.2:+58632023 None:intergenic
TTCCTCACACCCCTATATAC+CGG 0.471420 6.2:+58632007 None:intergenic
GGAGCAGAGTAGGACTTGTA+TGG 0.472667 6.2:-58631684 MS.gene30851:CDS
TCGCAGCAACATCATGTGCT+CGG 0.489406 6.2:+58631891 None:intergenic
CCTGAGTGGTGGCAGGTACA+GGG 0.491147 6.2:+58631813 None:intergenic
ACGACTCCAAAGAAGCGTGC+TGG 0.499803 6.2:-58632058 MS.gene30851:CDS
AGCGGCTGCACAGGCCGCAG+AGG 0.499896 6.2:-58631774 MS.gene30851:CDS
TATATAGGGGTGTGAGGAAG+AGG 0.500596 6.2:-58632003 MS.gene30851:CDS
CGGGCTGCCATCTCTGCTGT+CGG 0.502616 6.2:+58631911 None:intergenic
CGACTCCAAAGAAGCGTGCT+GGG 0.504020 6.2:-58632057 MS.gene30851:CDS
TGTTGCTGCGATGGCATTGA+GGG 0.505227 6.2:-58631879 MS.gene30851:CDS
GGCCGCAGAGGCTTTCAGAC+CGG 0.508268 6.2:-58631762 MS.gene30851:CDS
AAGATGAAGAGGTATCACTA+TGG 0.512792 6.2:-58631535 MS.gene30851:CDS
GAGTAGGACTTGTATGGAAG+AGG 0.516467 6.2:-58631678 MS.gene30851:CDS
GCCATATTCCTCAACAACTC+TGG 0.516505 6.2:+58631632 None:intergenic
GCGAATTCAGAGGGCTCTCA+GGG 0.519443 6.2:-58632118 MS.gene30851:CDS
TTAGTCATCGAAGTCTTGTC+CGG 0.525341 6.2:+58631743 None:intergenic
TTGTATGGAAGAGGAAGAAG+AGG 0.527030 6.2:-58631669 MS.gene30851:CDS
GGCTATTGCCACCTCTTCTA+CGG 0.529658 6.2:-58631708 MS.gene30851:CDS
TGAATTCGCAAATGAACTCT+CGG 0.541132 6.2:+58632132 None:intergenic
TAAATGGGTGTGTGAAATGA+GGG 0.541686 6.2:-58631972 MS.gene30851:CDS
CCCTGTACCTGCCACCACTC+AGG 0.544765 6.2:-58631813 MS.gene30851:CDS
AGTTCATTTGCGAATTCAGA+GGG 0.549616 6.2:-58632127 MS.gene30851:CDS
AGAGTCTGCAAAGTTGAGAC+AGG 0.553063 6.2:+58631847 None:intergenic
AGCACATGATGTTGCTGCGA+TGG 0.555409 6.2:-58631888 MS.gene30851:CDS
GTTCCAGGAGACTCGCCACC+CGG 0.558195 6.2:-58632026 MS.gene30851:CDS
ATGTTGCTGCGATGGCATTG+AGG 0.567345 6.2:-58631880 MS.gene30851:CDS
CTTCTACGGAGGAGCAGAGT+AGG 0.569439 6.2:-58631694 MS.gene30851:CDS
AGCTAACCTCACTTCCTCGT+TGG 0.571780 6.2:+58632084 None:intergenic
AAGAAGACTAAGATTTGGCT+AGG 0.578791 6.2:-58631941 MS.gene30851:CDS
TCCTCACACCCCTATATACC+GGG 0.585609 6.2:+58632008 None:intergenic
ATAAATGGGTGTGTGAAATG+AGG 0.586819 6.2:-58631973 MS.gene30851:CDS
GAGTTCATTTGCGAATTCAG+AGG 0.592725 6.2:-58632128 MS.gene30851:CDS
TGAACATGCCAGAGTTGTTG+AGG 0.597402 6.2:-58631640 MS.gene30851:CDS
TGATACCCAAAGCTATGTGT+AGG 0.600852 6.2:+58631599 None:intergenic
CTGCTCCTCCGTAGAAGAGG+TGG 0.604805 6.2:+58631700 None:intergenic
ACTCTGCTCCTCCGTAGAAG+AGG 0.607637 6.2:+58631697 None:intergenic
CAATTTCCAACGAGGAAGTG+AGG 0.611060 6.2:-58632090 MS.gene30851:CDS
TATTGCCACCTCTTCTACGG+AGG 0.628091 6.2:-58631705 MS.gene30851:CDS
CAAAGTTGAGACAGGCGTAG+TGG 0.644365 6.2:+58631855 None:intergenic
GTTGCTGCGATGGCATTGAG+GGG 0.648611 6.2:-58631878 MS.gene30851:CDS
TCAACTTTGCAGACTCTGCG+TGG 0.652025 6.2:-58631841 MS.gene30851:CDS
ACTCGCCACCCGGTATATAG+GGG 0.659441 6.2:-58632016 MS.gene30851:CDS
ACCCGGTATATAGGGGTGTG+AGG 0.669533 6.2:-58632009 MS.gene30851:CDS
GTCCGGTCTGAAAGCCTCTG+CGG 0.672100 6.2:+58631760 None:intergenic
TGTATGGAAGAGGAAGAAGA+GGG 0.673911 6.2:-58631668 MS.gene30851:CDS
CTCCAAAGAAGCGTGCTGGG+AGG 0.687412 6.2:-58632054 MS.gene30851:CDS
ATTCGCAAATGAACTCTCGG+TGG 0.692873 6.2:+58632135 None:intergenic
GAATTTGGAGAAAACTGGTG+TGG 0.699539 6.2:+58632157 None:intergenic
GATGACTAATGACATTGACA+CGG 0.709180 6.2:-58631729 MS.gene30851:CDS
CGAATTCAGAGGGCTCTCAG+GGG 0.717384 6.2:-58632117 MS.gene30851:CDS
GTATGGAAGAGGAAGAAGAG+GGG 0.733030 6.2:-58631667 MS.gene30851:CDS
ACTTTGCAGACTCTGCGTGG+CGG 0.741409 6.2:-58631838 MS.gene30851:CDS
TCACACCCCTATATACCGGG+TGG 0.772358 6.2:+58632011 None:intergenic
GGGGATGTCAATTTCCAACG+AGG 0.782366 6.2:-58632098 MS.gene30851:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
CAAACAAGAAGACTAAGATT+TGG - chr6.2:58631773-58631792 MS.gene30851:CDS 30.0%
GAAGAGGAACTTAGATAAAT+GGG - chr6.2:58631732-58631751 MS.gene30851:CDS 30.0%
GGCAAAAGATATACAAAAAG+CGG - chr6.2:58631927-58631946 MS.gene30851:CDS 30.0%
! CAAATCTTAGTCTTCTTGTT+TGG + chr6.2:58631775-58631794 None:intergenic 30.0%
AAGAAGACTAAGATTTGGCT+AGG - chr6.2:58631778-58631797 MS.gene30851:CDS 35.0%
ACCTCTTCATCTTGAAAATC+TGG + chr6.2:58632177-58632196 None:intergenic 35.0%
AGTTCATTTGCGAATTCAGA+GGG - chr6.2:58631592-58631611 MS.gene30851:CDS 35.0%
ATAAATGGGTGTGTGAAATG+AGG - chr6.2:58631746-58631765 MS.gene30851:CDS 35.0%
GATGACTAATGACATTGACA+CGG - chr6.2:58631990-58632009 MS.gene30851:CDS 35.0%
GGAAGAGGAACTTAGATAAA+TGG - chr6.2:58631731-58631750 MS.gene30851:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG - chr6.2:58631747-58631766 MS.gene30851:CDS 35.0%
TGAATTCGCAAATGAACTCT+CGG + chr6.2:58631590-58631609 None:intergenic 35.0%
! TTGTATATCTTTTGCCTGAG+TGG + chr6.2:58631923-58631942 None:intergenic 35.0%
!! AAGATGAAGAGGTATCACTA+TGG - chr6.2:58632184-58632203 MS.gene30851:CDS 35.0%
!! TCCAGATTTTCAAGATGAAG+AGG - chr6.2:58632173-58632192 MS.gene30851:CDS 35.0%
AATGAACTCTCGGTGGAATT+TGG + chr6.2:58631580-58631599 None:intergenic 40.0%
ATGTCTCCTACACATAGCTT+TGG - chr6.2:58632114-58632133 MS.gene30851:CDS 40.0%
GAATTTGGAGAAAACTGGTG+TGG + chr6.2:58631565-58631584 None:intergenic 40.0%
GAGTTCATTTGCGAATTCAG+AGG - chr6.2:58631591-58631610 MS.gene30851:CDS 40.0%
TGATACCCAAAGCTATGTGT+AGG + chr6.2:58632123-58632142 None:intergenic 40.0%
TGTATGGAAGAGGAAGAAGA+GGG - chr6.2:58632051-58632070 MS.gene30851:CDS 40.0%
TGTCTCCTACACATAGCTTT+GGG - chr6.2:58632115-58632134 MS.gene30851:CDS 40.0%
TTGTATGGAAGAGGAAGAAG+AGG - chr6.2:58632050-58632069 MS.gene30851:CDS 40.0%
! TATATCTTTTGCCTGAGTGG+TGG + chr6.2:58631920-58631939 None:intergenic 40.0%
! TTAGTCATCGAAGTCTTGTC+CGG + chr6.2:58631979-58631998 None:intergenic 40.0%
AGAGTCTGCAAAGTTGAGAC+AGG + chr6.2:58631875-58631894 None:intergenic 45.0%
ATTCGCAAATGAACTCTCGG+TGG + chr6.2:58631587-58631606 None:intergenic 45.0%
CAATTTCCAACGAGGAAGTG+AGG - chr6.2:58631629-58631648 MS.gene30851:CDS 45.0%
CGGTGGAATTTGGAGAAAAC+TGG + chr6.2:58631570-58631589 None:intergenic 45.0%
GAGTAGGACTTGTATGGAAG+AGG - chr6.2:58632041-58632060 MS.gene30851:CDS 45.0%
GCCAGAGTTGTTGAGGAATA+TGG - chr6.2:58632086-58632105 MS.gene30851:CDS 45.0%
GCCATATTCCTCAACAACTC+TGG + chr6.2:58632090-58632109 None:intergenic 45.0%
GTATGGAAGAGGAAGAAGAG+GGG - chr6.2:58632052-58632071 MS.gene30851:CDS 45.0%
TATACAAAAAGCGGCTGCAC+AGG - chr6.2:58631936-58631955 MS.gene30851:CDS 45.0%
TGAACATGCCAGAGTTGTTG+AGG - chr6.2:58632079-58632098 MS.gene30851:CDS 45.0%
TTCCTCACACCCCTATATAC+CGG + chr6.2:58631715-58631734 None:intergenic 45.0%
! TATATAGGGGTGTGAGGAAG+AGG - chr6.2:58631716-58631735 MS.gene30851:CDS 45.0%
AGCACATGATGTTGCTGCGA+TGG - chr6.2:58631831-58631850 MS.gene30851:CDS 50.0%
AGCTAACCTCACTTCCTCGT+TGG + chr6.2:58631638-58631657 None:intergenic 50.0%
ATGTTGCTGCGATGGCATTG+AGG - chr6.2:58631839-58631858 MS.gene30851:CDS 50.0%
CAAAGTTGAGACAGGCGTAG+TGG + chr6.2:58631867-58631886 None:intergenic 50.0%
GGAGCAGAGTAGGACTTGTA+TGG - chr6.2:58632035-58632054 MS.gene30851:CDS 50.0%
GGCTATTGCCACCTCTTCTA+CGG - chr6.2:58632011-58632030 MS.gene30851:CDS 50.0%
GGGGATGTCAATTTCCAACG+AGG - chr6.2:58631621-58631640 MS.gene30851:CDS 50.0%
TATTGCCACCTCTTCTACGG+AGG - chr6.2:58632014-58632033 MS.gene30851:CDS 50.0%
TCAACTTTGCAGACTCTGCG+TGG - chr6.2:58631878-58631897 MS.gene30851:CDS 50.0%
TCCTCACACCCCTATATACC+GGG + chr6.2:58631714-58631733 None:intergenic 50.0%
TCGCAGCAACATCATGTGCT+CGG + chr6.2:58631831-58631850 None:intergenic 50.0%
! CACTTTTCCGACAGCAGAGA+TGG - chr6.2:58631801-58631820 MS.gene30851:CDS 50.0%
! TGTTGCTGCGATGGCATTGA+GGG - chr6.2:58631840-58631859 MS.gene30851:CDS 50.0%
ACTCGCCACCCGGTATATAG+GGG - chr6.2:58631703-58631722 MS.gene30851:CDS 55.0%
ACTCTGCTCCTCCGTAGAAG+AGG + chr6.2:58632025-58632044 None:intergenic 55.0%
ACTTTGCAGACTCTGCGTGG+CGG - chr6.2:58631881-58631900 MS.gene30851:CDS 55.0%
AGACTCGCCACCCGGTATAT+AGG - chr6.2:58631701-58631720 MS.gene30851:CDS 55.0%
CGAATTCAGAGGGCTCTCAG+GGG - chr6.2:58631602-58631621 MS.gene30851:CDS 55.0%
CGCAGCAACATCATGTGCTC+GGG + chr6.2:58631830-58631849 None:intergenic 55.0%
CTTCTACGGAGGAGCAGAGT+AGG - chr6.2:58632025-58632044 MS.gene30851:CDS 55.0%
GACTCGCCACCCGGTATATA+GGG - chr6.2:58631702-58631721 MS.gene30851:CDS 55.0%
GCGAATTCAGAGGGCTCTCA+GGG - chr6.2:58631601-58631620 MS.gene30851:CDS 55.0%
TCACACCCCTATATACCGGG+TGG + chr6.2:58631711-58631730 None:intergenic 55.0%
TGCGAATTCAGAGGGCTCTC+AGG - chr6.2:58631600-58631619 MS.gene30851:CDS 55.0%
TGCTGGGAGGAAGAAGTTCC+AGG - chr6.2:58631678-58631697 MS.gene30851:CDS 55.0%
TTCCTCCCAGCACGCTTCTT+TGG + chr6.2:58631670-58631689 None:intergenic 55.0%
! ACCCGGTATATAGGGGTGTG+AGG - chr6.2:58631710-58631729 MS.gene30851:CDS 55.0%
! ACGACTCCAAAGAAGCGTGC+TGG - chr6.2:58631661-58631680 MS.gene30851:CDS 55.0%
! CGACTCCAAAGAAGCGTGCT+GGG - chr6.2:58631662-58631681 MS.gene30851:CDS 55.0%
! GTTGCTGCGATGGCATTGAG+GGG - chr6.2:58631841-58631860 MS.gene30851:CDS 55.0%
! TCTTTTGCCTGAGTGGTGGC+AGG + chr6.2:58631916-58631935 None:intergenic 55.0%
CCTGAGTGGTGGCAGGTACA+GGG + chr6.2:58631909-58631928 None:intergenic 60.0%
CTGCTCCTCCGTAGAAGAGG+TGG + chr6.2:58632022-58632041 None:intergenic 60.0%
GTCCGGTCTGAAAGCCTCTG+CGG + chr6.2:58631962-58631981 None:intergenic 60.0%
! CTCCAAAGAAGCGTGCTGGG+AGG - chr6.2:58631665-58631684 MS.gene30851:CDS 60.0%
ATACCGGGTGGCGAGTCTCC+TGG + chr6.2:58631699-58631718 None:intergenic 65.0%
CCCTGTACCTGCCACCACTC+AGG - chr6.2:58631906-58631925 MS.gene30851:CDS 65.0%
CGGGCTGCCATCTCTGCTGT+CGG + chr6.2:58631811-58631830 None:intergenic 65.0%
GCCTGAGTGGTGGCAGGTAC+AGG + chr6.2:58631910-58631929 None:intergenic 65.0%
GGCCGCAGAGGCTTTCAGAC+CGG - chr6.2:58631957-58631976 MS.gene30851:CDS 65.0%
GTTCCAGGAGACTCGCCACC+CGG - chr6.2:58631693-58631712 MS.gene30851:CDS 65.0%
AGCGGCTGCACAGGCCGCAG+AGG - chr6.2:58631945-58631964 MS.gene30851:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 58631526 58632215 58631526 ID=MS.gene30851
chr6.2 mRNA 58631526 58632215 58631526 ID=MS.gene30851.t1;Parent=MS.gene30851
chr6.2 exon 58631526 58632215 58631526 ID=MS.gene30851.t1.exon1;Parent=MS.gene30851.t1
chr6.2 CDS 58631526 58632215 58631526 ID=cds.MS.gene30851.t1;Parent=MS.gene30851.t1
Gene Sequence

>MS.gene30851

CACATGGATATGTTAACAACTAACAACTCTTCTTATCCACACCAGTTTTCTCCAAATTCCACCGAGAGTTCATTTGCGAATTCAGAGGGCTCTCAGGGGATGTCAATTTCCAACGAGGAAGTGAGGTTAGCTGCGACGACTCCAAAGAAGCGTGCTGGGAGGAAGAAGTTCCAGGAGACTCGCCACCCGGTATATAGGGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCAAACAAGAAGACTAAGATTTGGCTAGGCACTTTTCCGACAGCAGAGATGGCAGCCCGAGCACATGATGTTGCTGCGATGGCATTGAGGGGCCACTACGCCTGTCTCAACTTTGCAGACTCTGCGTGGCGGCTCCCTGTACCTGCCACCACTCAGGCAAAAGATATACAAAAAGCGGCTGCACAGGCCGCAGAGGCTTTCAGACCGGACAAGACTTCGATGACTAATGACATTGACACGGCTATTGCCACCTCTTCTACGGAGGAGCAGAGTAGGACTTGTATGGAAGAGGAAGAAGAGGGGACGATGAACATGCCAGAGTTGTTGAGGAATATGGCGCTAATGTCTCCTACACATAGCTTTGGGTATCATGAGTATGAAGATATTCATGTTCAAGACTTTCCAGATTTTCAAGATGAAGAGGTATCACTATGGAATTATTAA

Protein sequence

>MS.gene30851.t1

HMDMLTTNNSSYPHQFSPNSTESSFANSEGSQGMSISNEEVRLAATTPKKRAGRKKFQETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGHYACLNFADSAWRLPVPATTQAKDIQKAAAQAAEAFRPDKTSMTNDIDTAIATSSTEEQSRTCMEEEEEGTMNMPELLRNMALMSPTHSFGYHEYEDIHVQDFPDFQDEEVSLWNY