AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86608


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86608.t1 MTR_6g465690 89.474 228 18 3 1 223 1 227 1.67e-142 399
MS.gene86608.t1 MTR_6g466000 77.465 213 32 3 26 226 19 227 2.29e-113 323
MS.gene86608.t1 MTR_6g465450 72.727 220 48 5 3 218 1 212 6.64e-106 305
MS.gene86608.t1 MTR_6g465460 76.503 183 39 3 39 218 29 210 5.65e-100 291
MS.gene86608.t1 MTR_6g465420 75.410 183 42 2 39 218 29 211 1.15e-99 290
MS.gene86608.t1 MTR_6g465430 76.216 185 41 2 37 218 27 211 8.44e-99 288
MS.gene86608.t1 MTR_6g466130 74.038 208 46 4 23 226 25 228 2.52e-97 283
MS.gene86608.t1 MTR_6g465530 71.357 199 44 4 36 226 5 198 2.01e-92 270
MS.gene86608.t1 MTR_6g465510 71.154 208 39 4 36 226 5 208 2.58e-90 265
MS.gene86608.t1 MTR_6g465990 65.741 216 38 4 23 226 2 193 2.75e-84 249
MS.gene86608.t1 MTR_6g465850 54.762 252 52 4 33 226 32 279 9.03e-78 235
MS.gene86608.t1 MTR_1g101600 64.249 193 62 3 36 226 13 200 7.00e-77 230
MS.gene86608.t1 MTR_6g466020 55.446 202 66 4 23 223 2 180 2.13e-67 205
MS.gene86608.t1 MTR_5g010930 46.860 207 85 6 39 226 24 224 4.35e-54 173
MS.gene86608.t1 MTR_5g010940 41.152 243 110 5 1 226 1 227 2.03e-53 171
MS.gene86608.t1 MTR_4g102660 51.675 209 77 8 36 226 16 218 1.77e-52 169
MS.gene86608.t1 MTR_5g010910 42.601 223 104 5 22 226 6 222 3.90e-50 163
MS.gene86608.t1 MTR_3g110205 58.333 96 40 0 59 154 38 133 2.80e-33 119
MS.gene86608.t1 MTR_8g006410 66.667 78 26 0 61 138 49 126 3.31e-32 116
MS.gene86608.t1 MTR_7g046260 65.432 81 28 0 58 138 55 135 1.09e-31 116
MS.gene86608.t1 MTR_7g117690 63.750 80 29 0 59 138 23 102 6.50e-31 112
MS.gene86608.t1 MTR_5g012910 63.291 79 29 0 60 138 24 102 2.57e-30 110
MS.gene86608.t1 MTR_2g085015 57.778 90 36 2 58 145 41 130 7.76e-30 111
MS.gene86608.t1 MTR_8g013860 54.639 97 43 1 43 138 25 121 4.61e-29 108
MS.gene86608.t1 MTR_2g101340 53.465 101 41 2 44 138 15 115 7.50e-29 107
MS.gene86608.t1 MTR_8g102800 54.455 101 46 0 54 154 27 127 9.08e-29 108
MS.gene86608.t1 MTR_6g088405 60.256 78 31 0 61 138 41 118 1.15e-27 105
MS.gene86608.t1 MTR_8g027465 53.000 100 41 2 42 138 20 116 2.07e-27 103
MS.gene86608.t1 MTR_4g102670 40.462 173 81 6 60 226 11 167 9.34e-27 101
MS.gene86608.t1 MTR_4g100650 60.256 78 31 0 61 138 71 148 1.46e-25 100
MS.gene86608.t1 MTR_6g088425 49.123 114 48 1 42 145 17 130 9.13e-24 95.5
MS.gene86608.t1 MTR_4g035430 46.429 112 53 2 34 145 9 113 5.23e-23 93.2
MS.gene86608.t1 MTR_1g006660 55.319 94 38 1 49 138 28 121 4.05e-22 91.7
MS.gene86608.t1 MTR_5g008550 34.078 179 95 5 64 225 21 193 1.39e-19 83.2
MS.gene86608.t1 MTR_5g008590 50.459 109 53 1 64 172 11 118 2.61e-19 82.4
MS.gene86608.t1 MTR_2g435590 40.833 120 69 1 15 134 49 166 2.15e-18 81.6
MS.gene86608.t1 MTR_1g101550 35.429 175 100 2 64 226 57 230 7.99e-18 79.3
MS.gene86608.t1 MTR_1g014780 35.115 131 72 2 33 150 1 131 9.26e-18 79.3
MS.gene86608.t1 MTR_5g008470 45.238 84 46 0 66 149 77 160 4.50e-17 76.3
MS.gene86608.t1 MTR_1g014820 36.000 125 64 2 63 183 26 138 7.03e-17 77.4
MS.gene86608.t1 MTR_3g102100 40.541 111 59 3 64 172 45 150 1.05e-16 75.1
MS.gene86608.t1 MTR_3g105510 44.186 86 44 1 64 145 37 122 1.53e-16 76.3
MS.gene86608.t1 MTR_5g083340 60.345 58 23 0 64 121 85 142 1.77e-16 77.8
MS.gene86608.t1 MTR_2g105380 44.444 90 45 1 52 136 105 194 2.18e-16 77.4
MS.gene86608.t1 MTR_1g090170 43.820 89 44 1 59 147 147 229 3.04e-16 76.3
MS.gene86608.t1 MTR_8g090350 29.651 172 101 5 63 217 112 280 4.59e-16 75.5
MS.gene86608.t1 MTR_1g060910 32.558 172 69 6 48 196 3 150 5.21e-16 73.2
MS.gene86608.t1 MTR_1g090170 43.820 89 44 1 59 147 234 316 5.25e-16 76.3
MS.gene86608.t1 MTR_2g043050 44.706 85 47 0 63 147 18 102 7.40e-16 73.9
MS.gene86608.t1 MTR_5g062700 57.627 59 25 0 63 121 172 230 8.69e-16 75.5
MS.gene86608.t1 MTR_3g074130 59.649 57 23 0 63 119 149 205 9.09e-16 75.5
MS.gene86608.t1 MTR_1g087920 46.154 78 42 0 54 131 67 144 9.43e-16 75.1
MS.gene86608.t1 MTR_1g014860 36.449 107 61 1 59 158 17 123 1.46e-15 73.2
MS.gene86608.t1 MTR_1g019110 43.333 90 43 1 64 145 44 133 1.46e-15 72.4
MS.gene86608.t1 MTR_2g090235 57.627 59 25 0 63 121 217 275 1.51e-15 75.1
MS.gene86608.t1 MTR_7g020980 53.333 60 28 0 60 119 47 106 2.17e-15 71.6
MS.gene86608.t1 MTR_7g021010 54.688 64 28 1 57 119 4 67 3.31e-15 70.1
MS.gene86608.t1 MTR_7g021010 53.333 60 28 0 60 119 47 106 5.01e-15 70.9
MS.gene86608.t1 MTR_5g083330 50.685 73 36 0 49 121 20 92 5.37e-15 72.8
MS.gene86608.t1 MTR_4g086220 58.929 56 23 0 64 119 96 151 5.67e-15 71.6
MS.gene86608.t1 MTR_3g105480 44.048 84 43 1 66 145 33 116 5.74e-15 71.6
MS.gene86608.t1 MTR_1g028560 32.026 153 82 4 10 145 44 191 6.13e-15 73.2
MS.gene86608.t1 MTR_3g053690 57.812 64 24 1 56 119 22 82 7.00e-15 71.2
MS.gene86608.t1 MTR_2g043030 40.659 91 54 0 63 153 18 108 7.94e-15 70.9
MS.gene86608.t1 MTR_5g082950 60.714 56 22 0 64 119 66 121 8.00e-15 72.4
MS.gene86608.t1 MTR_1g014800 51.667 60 29 0 63 122 30 89 8.75e-15 70.9
MS.gene86608.t1 MTR_2g089170 58.929 56 23 0 64 119 65 120 9.61e-15 70.1
MS.gene86608.t1 MTR_8g092460 53.333 60 28 0 64 123 145 204 1.04e-14 72.0
MS.gene86608.t1 MTR_8g022820 43.902 82 43 1 54 135 114 192 1.05e-14 72.4
MS.gene86608.t1 MTR_8g022820 43.902 82 43 1 54 135 114 192 1.05e-14 72.4
MS.gene86608.t1 MTR_8g022820 37.736 106 61 2 54 157 113 215 1.10e-14 72.4
MS.gene86608.t1 MTR_5g016750 55.357 56 25 0 64 119 25 80 1.12e-14 70.1
MS.gene86608.t1 MTR_2g078680 57.143 63 24 1 57 119 27 86 1.32e-14 70.1
MS.gene86608.t1 MTR_4g086165 43.158 95 46 1 25 119 51 137 1.46e-14 70.1
MS.gene86608.t1 MTR_4g086160 57.143 56 24 0 64 119 96 151 1.62e-14 70.5
MS.gene86608.t1 MTR_4g086190 57.143 56 24 0 64 119 96 151 2.45e-14 70.1
MS.gene86608.t1 MTR_7g028925 53.333 60 25 1 63 122 28 84 2.91e-14 66.6
MS.gene86608.t1 MTR_0939s0010 57.143 56 24 0 64 119 65 120 3.02e-14 68.9
MS.gene86608.t1 MTR_7g092190 58.929 56 23 0 64 119 30 85 4.15e-14 70.1
MS.gene86608.t1 MTR_1g074310 57.895 57 23 1 64 119 21 77 4.98e-14 67.4
MS.gene86608.t1 MTR_2g015050 50.725 69 33 1 52 119 122 190 5.35e-14 69.7
MS.gene86608.t1 MTR_4g114570 47.887 71 30 1 64 134 7 70 1.09e-13 67.8
MS.gene86608.t1 MTR_5g009620 41.304 92 48 1 34 119 76 167 1.16e-13 68.9
MS.gene86608.t1 MTR_2g438180 57.627 59 24 1 64 121 14 72 1.53e-13 65.9
MS.gene86608.t1 MTR_4g010640 55.357 56 25 0 64 119 7 62 1.92e-13 67.4
MS.gene86608.t1 MTR_1g048610 38.462 104 61 2 17 119 44 145 2.53e-13 67.0
MS.gene86608.t1 MTR_4g078710 55.357 56 25 0 64 119 28 83 2.61e-13 67.0
MS.gene86608.t1 MTR_3g106290 58.929 56 23 0 64 119 8 63 2.63e-13 66.2
MS.gene86608.t1 MTR_2g043020 29.412 187 108 3 63 226 18 203 2.88e-13 66.6
MS.gene86608.t1 MTR_2g014340 49.296 71 33 1 49 119 7 74 3.00e-13 66.6
MS.gene86608.t1 MTR_3g090760 40.659 91 45 1 40 130 98 179 3.16e-13 68.2
MS.gene86608.t1 MTR_4g008860 58.929 56 23 0 64 119 8 63 3.25e-13 66.2
MS.gene86608.t1 MTR_1g070070 54.386 57 25 1 64 119 21 77 4.31e-13 64.7
MS.gene86608.t1 MTR_4g100450 42.857 84 47 1 37 119 127 210 5.07e-13 67.4
MS.gene86608.t1 MTR_2g103700 53.571 56 26 0 64 119 7 62 5.92e-13 65.1
MS.gene86608.t1 MTR_5g085100 41.509 106 46 3 24 129 15 104 6.25e-13 66.6
MS.gene86608.t1 MTR_1g074230 56.140 57 24 1 64 119 19 75 7.39e-13 63.9
MS.gene86608.t1 MTR_2g043040 40.000 85 51 0 63 147 18 102 9.95e-13 65.5
MS.gene86608.t1 MTR_2g014300 57.143 56 24 0 64 119 15 70 1.04e-12 64.3
MS.gene86608.t1 MTR_1g074250 52.459 61 27 1 61 119 16 76 1.34e-12 63.2
MS.gene86608.t1 MTR_2g016730 48.529 68 34 1 53 119 11 78 1.42e-12 66.2
MS.gene86608.t1 MTR_3g072610 47.191 89 43 2 64 148 25 113 1.66e-12 64.7
MS.gene86608.t1 MTR_4g100420 47.297 74 36 2 47 119 142 213 2.01e-12 65.5
MS.gene86608.t1 MTR_4g054360 49.231 65 32 1 56 119 116 180 5.51e-12 63.9
MS.gene86608.t1 MTR_4g088005 36.449 107 62 2 14 119 12 113 5.54e-12 61.2
MS.gene86608.t1 MTR_8g099215 26.064 188 129 3 33 210 70 257 9.04e-12 63.5
MS.gene86608.t1 MTR_1g090290 50.000 62 28 2 59 119 110 169 9.81e-12 62.4
MS.gene86608.t1 MTR_5g085070 48.649 74 28 2 56 129 46 109 1.25e-11 63.2
MS.gene86608.t1 MTR_4g111915 45.763 59 32 0 64 122 53 111 1.51e-11 60.5
MS.gene86608.t1 MTR_4g054740 47.692 65 33 1 56 119 89 153 1.72e-11 62.4
MS.gene86608.t1 MTR_5g075570 46.667 60 32 0 60 119 120 179 1.88e-11 62.4
MS.gene86608.t1 MTR_6g041970 40.659 91 41 1 64 154 18 95 2.05e-11 58.9
MS.gene86608.t1 MTR_6g012970 39.326 89 46 1 31 119 13 93 2.17e-11 63.2
MS.gene86608.t1 MTR_8g069360 51.786 56 27 0 64 119 44 99 2.54e-11 62.8
MS.gene86608.t1 MTR_6g029180 45.833 72 38 1 49 120 19 89 3.96e-11 62.0
MS.gene86608.t1 MTR_5g032820 52.632 57 27 0 64 120 46 102 4.91e-11 62.0
MS.gene86608.t1 MTR_4g112490 45.763 59 32 0 64 122 53 111 5.60e-11 60.1
MS.gene86608.t1 MTR_8g032610 49.123 57 29 0 64 120 27 83 5.98e-11 61.2
MS.gene86608.t1 MTR_5g008540 45.902 61 33 0 66 126 26 86 6.12e-11 57.8
MS.gene86608.t1 MTR_7g085810 50.000 56 28 0 64 119 30 85 6.35e-11 60.8
MS.gene86608.t1 MTR_8g006840 50.877 57 27 1 64 119 125 181 6.60e-11 60.1
MS.gene86608.t1 MTR_2g015040 50.877 57 27 1 64 119 63 119 8.93e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86608.t1 AT4G25470 56.122 196 69 4 41 226 28 216 5.01e-67 206
MS.gene86608.t1 AT4G25480 57.436 195 66 4 42 226 29 216 4.85e-64 198
MS.gene86608.t1 AT5G51990 52.000 200 74 4 41 226 31 222 1.64e-63 197
MS.gene86608.t1 AT1G63030 50.000 192 85 4 35 226 1 181 4.73e-60 187
MS.gene86608.t1 AT1G63030 50.000 192 85 4 35 226 1 181 4.73e-60 187
MS.gene86608.t1 AT4G25490 56.410 195 68 4 42 226 26 213 5.24e-60 188
MS.gene86608.t1 AT1G12610 67.241 116 38 0 35 150 1 116 5.34e-56 177
MS.gene86608.t1 AT5G25810 59.574 94 37 1 53 145 24 117 2.94e-33 119
MS.gene86608.t1 AT2G35700 48.872 133 68 0 59 191 40 172 4.90e-32 115
MS.gene86608.t1 AT5G11590 50.407 123 57 1 27 145 10 132 5.41e-32 117
MS.gene86608.t1 AT2G44940 55.238 105 47 0 53 157 89 193 2.12e-31 117
MS.gene86608.t1 AT4G32800 51.402 107 46 1 51 151 6 112 3.38e-31 114
MS.gene86608.t1 AT1G01250 51.402 107 49 1 35 138 13 119 1.73e-28 106
MS.gene86608.t1 AT3G16280 60.759 79 31 0 60 138 57 135 4.02e-28 107
MS.gene86608.t1 AT4G16750 50.893 112 49 2 34 139 4 115 4.61e-28 105
MS.gene86608.t1 AT3G16280 60.759 79 31 0 60 138 75 153 6.10e-28 107
MS.gene86608.t1 AT2G36450 41.053 190 88 6 52 226 3 183 6.22e-27 102
MS.gene86608.t1 AT2G25820 61.842 76 29 0 63 138 25 100 5.72e-26 100
MS.gene86608.t1 AT3G60490 61.333 75 29 0 64 138 71 145 1.00e-25 101
MS.gene86608.t1 AT5G52020 41.243 177 88 6 60 226 61 231 2.27e-25 99.8
MS.gene86608.t1 AT1G71450 36.364 165 96 3 64 225 24 182 3.87e-23 92.4
MS.gene86608.t1 AT2G47520 45.361 97 49 1 23 119 13 105 3.16e-21 87.0
MS.gene86608.t1 AT1G33760 36.686 169 93 3 64 225 20 181 2.64e-20 85.1
MS.gene86608.t1 AT1G21910 47.826 92 41 1 64 148 50 141 2.86e-19 83.6
MS.gene86608.t1 AT1G77200 47.222 108 56 1 31 138 11 117 3.85e-19 83.2
MS.gene86608.t1 AT1G12630 39.572 187 84 6 60 226 15 192 2.45e-18 80.1
MS.gene86608.t1 AT4G13620 52.564 78 36 1 45 121 212 289 2.78e-18 82.8
MS.gene86608.t1 AT1G22190 41.964 112 50 2 10 121 44 140 4.85e-18 80.5
MS.gene86608.t1 AT3G16770 53.846 78 29 1 44 121 66 136 6.37e-18 80.1
MS.gene86608.t1 AT1G46768 57.143 63 26 1 59 121 27 88 7.71e-18 77.4
MS.gene86608.t1 AT1G46768 57.143 63 26 1 59 121 27 88 9.33e-18 77.4
MS.gene86608.t1 AT1G46768 57.143 63 26 1 59 121 27 88 9.33e-18 77.4
MS.gene86608.t1 AT4G39780 57.377 61 26 0 59 119 88 148 2.06e-17 79.0
MS.gene86608.t1 AT5G21960 46.429 84 45 0 62 145 5 88 5.45e-17 77.0
MS.gene86608.t1 AT1G19210 32.667 150 94 3 64 212 12 155 1.00e-16 75.5
MS.gene86608.t1 AT1G74930 43.023 86 49 0 64 149 21 106 1.04e-16 75.9
MS.gene86608.t1 AT5G65130 38.462 130 66 4 4 121 43 170 1.40e-16 77.0
MS.gene86608.t1 AT5G65130 38.462 130 66 4 4 121 41 168 1.60e-16 76.6
MS.gene86608.t1 AT2G22200 59.649 57 23 0 63 119 70 126 3.09e-16 75.9
MS.gene86608.t1 AT4G06746 51.613 62 30 0 64 125 36 97 4.39e-16 73.2
MS.gene86608.t1 AT1G78080 57.627 59 25 0 63 121 151 209 5.92e-16 75.9
MS.gene86608.t1 AT4G36900 45.679 81 43 1 39 119 6 85 8.49e-16 73.2
MS.gene86608.t1 AT3G50260 34.074 135 75 4 56 188 13 135 9.04e-16 72.4
MS.gene86608.t1 AT3G11020 54.545 66 30 0 58 123 72 137 1.21e-15 75.1
MS.gene86608.t1 AT2G20880 47.500 80 40 1 40 119 165 242 1.22e-15 75.1
MS.gene86608.t1 AT1G71520 34.532 139 79 4 58 190 8 140 1.28e-15 71.6
MS.gene86608.t1 AT5G67190 55.357 56 25 0 64 119 21 76 1.66e-15 72.4
MS.gene86608.t1 AT2G23340 57.143 56 24 0 64 119 28 83 1.69e-15 72.0
MS.gene86608.t1 AT1G36060 59.649 57 23 0 63 119 142 198 1.99e-15 74.3
MS.gene86608.t1 AT2G33710 47.500 80 37 1 59 133 65 144 2.37e-15 72.4
MS.gene86608.t1 AT2G33710 55.738 61 27 0 59 119 65 125 2.50e-15 72.8
MS.gene86608.t1 AT5G05410 58.929 56 23 0 64 119 79 134 3.49e-15 73.6
MS.gene86608.t1 AT3G61630 34.286 140 82 2 64 193 105 244 3.93e-15 73.2
MS.gene86608.t1 AT5G07580 40.945 127 67 4 15 135 58 182 4.21e-15 71.6
MS.gene86608.t1 AT5G05410 58.929 56 23 0 64 119 79 134 4.28e-15 73.6
MS.gene86608.t1 AT4G28140 54.237 59 27 0 63 121 142 200 4.45e-15 72.8
MS.gene86608.t1 AT5G13330 50.685 73 31 2 60 132 37 104 1.12e-14 70.5
MS.gene86608.t1 AT3G15210 57.143 63 24 1 57 119 21 80 1.78e-14 70.1
MS.gene86608.t1 AT3G57600 57.143 56 24 0 64 119 28 83 2.16e-14 70.9
MS.gene86608.t1 AT1G72360 40.000 85 51 0 35 119 45 129 2.40e-14 70.5
MS.gene86608.t1 AT5G61890 55.000 60 25 1 60 119 88 145 2.85e-14 70.1
MS.gene86608.t1 AT5G61600 59.016 61 22 2 60 119 86 144 4.58e-14 69.3
MS.gene86608.t1 AT5G44210 57.143 56 24 0 64 119 33 88 5.59e-14 68.6
MS.gene86608.t1 AT1G15360 57.143 56 24 0 64 119 7 62 5.73e-14 68.6
MS.gene86608.t1 AT1G15360 57.143 56 24 0 64 119 7 62 5.73e-14 68.6
MS.gene86608.t1 AT1G22810 39.785 93 41 2 64 148 14 99 6.55e-14 67.0
MS.gene86608.t1 AT1G03800 41.489 94 49 2 29 119 18 108 7.27e-14 68.9
MS.gene86608.t1 AT5G47230 32.680 153 91 5 57 204 151 296 7.73e-14 69.7
MS.gene86608.t1 AT1G72360 47.619 63 33 0 57 119 18 80 9.06e-14 68.2
MS.gene86608.t1 AT5G64750 48.571 70 35 1 74 143 195 263 1.13e-13 69.7
MS.gene86608.t1 AT5G51190 55.556 63 25 2 58 119 68 128 1.21e-13 67.8
MS.gene86608.t1 AT4G27950 54.386 57 26 0 64 120 118 174 1.38e-13 69.3
MS.gene86608.t1 AT4G11140 39.785 93 43 2 64 149 87 173 1.57e-13 68.6
MS.gene86608.t1 AT1G75490 38.835 103 62 1 33 134 10 112 1.72e-13 67.4
MS.gene86608.t1 AT1G72360 47.619 63 33 0 57 119 69 131 2.13e-13 67.8
MS.gene86608.t1 AT5G43410 53.333 60 27 1 61 119 12 71 2.29e-13 65.1
MS.gene86608.t1 AT5G19790 47.436 78 37 2 45 121 5 79 3.05e-13 67.4
MS.gene86608.t1 AT4G31060 30.061 163 102 4 54 213 22 175 4.75e-13 65.9
MS.gene86608.t1 AT5G25390 53.571 56 26 0 64 119 7 62 5.07e-13 65.9
MS.gene86608.t1 AT3G23230 54.386 57 25 1 64 119 20 76 7.21e-13 63.9
MS.gene86608.t1 AT5G53290 40.909 88 51 1 33 120 95 181 1.06e-12 66.6
MS.gene86608.t1 AT5G25190 57.143 56 24 0 64 119 8 63 1.30e-12 64.3
MS.gene86608.t1 AT5G18450 53.448 58 27 0 63 120 33 90 1.46e-12 65.9
MS.gene86608.t1 AT3G20310 51.613 62 30 0 58 119 21 82 1.58e-12 65.1
MS.gene86608.t1 AT1G28360 57.143 56 24 0 64 119 12 67 2.16e-12 63.9
MS.gene86608.t1 AT1G28370 53.571 56 26 0 64 119 20 75 4.20e-12 62.8
MS.gene86608.t1 AT1G77640 48.889 90 40 2 64 147 43 132 4.90e-12 63.9
MS.gene86608.t1 AT4G17490 53.125 64 27 2 57 119 132 193 5.02e-12 64.3
MS.gene86608.t1 AT4G23750 50.877 57 28 0 64 120 122 178 5.49e-12 64.7
MS.gene86608.t1 AT4G23750 50.877 57 28 0 64 120 122 178 5.49e-12 64.7
MS.gene86608.t1 AT2G40340 51.786 56 27 0 64 119 14 69 5.91e-12 63.9
MS.gene86608.t1 AT2G40340 51.786 56 27 0 64 119 14 69 5.91e-12 63.9
MS.gene86608.t1 AT2G40340 51.786 56 27 0 64 119 14 69 5.91e-12 63.9
MS.gene86608.t1 AT1G28370 53.571 56 26 0 64 119 58 113 7.86e-12 62.8
MS.gene86608.t1 AT2G40340 29.487 156 75 4 64 209 72 202 8.19e-12 63.9
MS.gene86608.t1 AT1G50640 53.968 63 26 1 57 119 24 83 8.87e-12 62.8
MS.gene86608.t1 AT5G47220 54.386 57 25 1 64 119 117 173 9.87e-12 63.2
MS.gene86608.t1 AT2G40340 51.786 56 27 0 64 119 72 127 1.15e-11 63.5
MS.gene86608.t1 AT2G40340 51.786 56 27 0 64 119 79 134 1.38e-11 63.5
MS.gene86608.t1 AT5G61590 48.352 91 44 2 46 135 91 179 1.69e-11 61.6
MS.gene86608.t1 AT1G12890 42.308 78 42 1 42 119 2 76 1.97e-11 62.0
MS.gene86608.t1 AT2G46310 50.000 56 28 0 64 119 99 154 2.45e-11 62.4
MS.gene86608.t1 AT2G40350 44.444 72 33 1 64 135 74 138 4.02e-11 60.1
MS.gene86608.t1 AT2G40350 44.444 72 33 1 64 135 67 131 4.42e-11 59.7
MS.gene86608.t1 AT5G25390 51.786 56 24 1 64 119 7 59 6.81e-11 59.7
MS.gene86608.t1 AT4G17500 54.386 57 25 1 64 119 148 204 8.11e-11 60.8
MS.gene86608.t1 AT3G23240 48.276 58 29 1 64 120 82 139 8.39e-11 60.1
MS.gene86608.t1 AT5G07310 53.125 64 28 1 60 123 90 151 9.20e-11 60.5

Find 76 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTCCCTGCACGCTTCTT+TGG 0.216980 6.1:-50694024 None:intergenic
AATGAACTCTCGGAGGAATT+TGG 0.252896 6.1:-50693934 None:intergenic
CAAATCTTAGTCTTCTTGTT+TGG 0.292823 6.1:-50694129 None:intergenic
ATGTTGCTGCGATGGCATTA+AGG 0.297537 6.1:+50694196 MS.gene86608:CDS
GCCAGAGTTGTTGAGGAATA+TGG 0.301561 6.1:+50694437 MS.gene86608:CDS
ACCTCTTCATCTTGAAAATC+TGG 0.311282 6.1:-50694525 None:intergenic
GCCTGAGTGGTGGCAGGTAT+AGG 0.319307 6.1:-50694264 None:intergenic
CCTGAGTGGTGGCAGGTATA+GGG 0.352227 6.1:-50694263 None:intergenic
ATGTGCCCGGGCTGCCATCT+CGG 0.400727 6.1:-50694172 None:intergenic
AGACTCGCCACCCGGTATAC+AGG 0.404494 6.1:+50694058 MS.gene86608:CDS
AACTGCCGAGATGGCAGCCC+GGG 0.407631 6.1:+50694167 MS.gene86608:CDS
TGTGGATAGGAAGAGTTATT+AGG 0.414097 6.1:-50693901 None:intergenic
TGCGAATTCAGAGGGCTCTC+AGG 0.415939 6.1:+50693957 MS.gene86608:CDS
CAAACAAGAAGACTAAGATT+TGG 0.423028 6.1:+50694130 MS.gene86608:CDS
TTCCTCACACCCCTGTATAC+CGG 0.428874 6.1:-50694069 None:intergenic
ATGTCTCCTACACATAGCTT+TGG 0.439535 6.1:+50694465 MS.gene86608:CDS
TGTCTCCTACACATAGCTTT+GGG 0.457669 6.1:+50694466 MS.gene86608:CDS
CTCGGAGGAATTTGGAGAAA+GGG 0.460487 6.1:-50693926 None:intergenic
AGCTGCTGCACAGGCCGCAG+AGG 0.462612 6.1:+50694302 MS.gene86608:CDS
TCGCAGCAACATCATGTGCC+CGG 0.465642 6.1:-50694185 None:intergenic
GGAAGAGGAACATAGACAAA+TGG 0.472354 6.1:+50694088 MS.gene86608:CDS
GGAGCAGAGTAGGACTTGTA+TGG 0.472667 6.1:+50694386 MS.gene86608:CDS
CGGGCTGCCATCTCGGCAGT+TGG 0.488790 6.1:-50694165 None:intergenic
TCCTCACACCCCTGTATACC+GGG 0.496269 6.1:-50694068 None:intergenic
TGTTGCTGCGATGGCATTAA+GGG 0.496379 6.1:+50694197 MS.gene86608:CDS
TATACAGGGGTGTGAGGAAG+AGG 0.502437 6.1:+50694073 MS.gene86608:CDS
GGCCGCAGAGGCTTTCAGAC+CGG 0.508268 6.1:+50694314 MS.gene86608:CDS
CGCAGCAACATCATGTGCCC+GGG 0.510443 6.1:-50694184 None:intergenic
AAGATGAAGAGGTATCACTA+TGG 0.512792 6.1:+50694535 MS.gene86608:CDS
GAGTAGGACTTGTATGGAAG+AGG 0.516467 6.1:+50694392 MS.gene86608:CDS
GCCATATTCCTCAACAACTC+TGG 0.516505 6.1:-50694438 None:intergenic
GCGAATTCAGAGGGCTCTCA+GGG 0.519443 6.1:+50693958 MS.gene86608:CDS
ACGACTCCAAAGAAGCGTGC+AGG 0.519720 6.1:+50694018 MS.gene86608:CDS
CAACTGCCGAGATGGCAGCC+CGG 0.522483 6.1:+50694166 MS.gene86608:CDS
GGCACATGATGTTGCTGCGA+TGG 0.523213 6.1:+50694188 MS.gene86608:CDS
TTAGTCATCGAAGTCTTGTC+CGG 0.525341 6.1:-50694333 None:intergenic
GAAGAGGAACATAGACAAAT+GGG 0.527875 6.1:+50694089 MS.gene86608:CDS
GACTCGCCACCCGGTATACA+GGG 0.529452 6.1:+50694059 MS.gene86608:CDS
TCTCGGAGGAATTTGGAGAA+AGG 0.533344 6.1:-50693927 None:intergenic
TGAATTCGCAAATGAACTCT+CGG 0.538349 6.1:-50693944 None:intergenic
GGAGTCTGCAAAGTTGAGAC+AGG 0.548191 6.1:-50694229 None:intergenic
AGTTCATTTGCGAATTCAGA+GGG 0.549616 6.1:+50693949 MS.gene86608:CDS
TTGTATGGAAGAGGAAGAAG+AGG 0.552825 6.1:+50694401 MS.gene86608:CDS
GTTCAAGGAGACTCGCCACC+CGG 0.558195 6.1:+50694050 MS.gene86608:CDS
CGACTCCAAAGAAGCGTGCA+GGG 0.565965 6.1:+50694019 MS.gene86608:CDS
TGCAGGGAGGAAGAAGTTCA+AGG 0.566465 6.1:+50694035 MS.gene86608:CDS
CCCTATACCTGCCACCACTC+AGG 0.567783 6.1:+50694263 MS.gene86608:CDS
CCACTACGGAGGAGCAGAGT+AGG 0.568284 6.1:+50694376 MS.gene86608:CDS
AGCTAACCTCACTTCCTCGT+TGG 0.571780 6.1:-50693992 None:intergenic
CAAATGGGTGTGTGAAATGA+GGG 0.573881 6.1:+50694104 MS.gene86608:CDS
AAGAAGACTAAGATTTGGCT+AGG 0.578791 6.1:+50694135 MS.gene86608:CDS
ACAAATGGGTGTGTGAAATG+AGG 0.584388 6.1:+50694103 MS.gene86608:CDS
GAGTTCATTTGCGAATTCAG+AGG 0.592725 6.1:+50693948 MS.gene86608:CDS
TGAACATGCCAGAGTTGTTG+AGG 0.595940 6.1:+50694430 MS.gene86608:CDS
TGACACGGCTATTGCCACTA+CGG 0.599791 6.1:+50694362 MS.gene86608:CDS
TCATACCCAAAGCTATGTGT+AGG 0.603291 6.1:-50694471 None:intergenic
CAATTTCCAACGAGGAAGTG+AGG 0.611060 6.1:+50693986 MS.gene86608:CDS
TCGGAGGAATTTGGAGAAAG+GGG 0.615781 6.1:-50693925 None:intergenic
ACCCGGTATACAGGGGTGTG+AGG 0.624934 6.1:+50694067 MS.gene86608:CDS
CCTACTCTGCTCCTCCGTAG+TGG 0.628033 6.1:-50694376 None:intergenic
TGTATGGAAGAGGAAGAAGA+GGG 0.637572 6.1:+50694402 MS.gene86608:CDS
TATGGAAGAGGAAGAAGAGG+GGG 0.662829 6.1:+50694404 MS.gene86608:CDS
CGGAGGAATTTGGAGAAAGG+GGG 0.663054 6.1:-50693924 None:intergenic
TCAACTTTGCAGACTCCGCG+TGG 0.671197 6.1:+50694235 MS.gene86608:CDS
GTCCGGTCTGAAAGCCTCTG+CGG 0.672100 6.1:-50694316 None:intergenic
GTTGCTGCGATGGCATTAAG+GGG 0.678204 6.1:+50694198 MS.gene86608:CDS
CACGGCTATTGCCACTACGG+AGG 0.684552 6.1:+50694365 MS.gene86608:CDS
ACTCGCCACCCGGTATACAG+GGG 0.698870 6.1:+50694060 MS.gene86608:CDS
GATGACTAATGACATTGACA+CGG 0.709180 6.1:+50694347 MS.gene86608:CDS
CGAATTCAGAGGGCTCTCAG+GGG 0.717384 6.1:+50693959 MS.gene86608:CDS
AGGTATAGGGAGACGCCACG+CGG 0.725576 6.1:-50694250 None:intergenic
ATTCGCAAATGAACTCTCGG+AGG 0.727426 6.1:-50693941 None:intergenic
TCACACCCCTGTATACCGGG+TGG 0.728872 6.1:-50694065 None:intergenic
GTATGGAAGAGGAAGAAGAG+GGG 0.730904 6.1:+50694403 MS.gene86608:CDS
CTCCAAAGAAGCGTGCAGGG+AGG 0.735252 6.1:+50694022 MS.gene86608:CDS
GGGGATGTCAATTTCCAACG+AGG 0.782366 6.1:+50693978 MS.gene86608:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
CAAACAAGAAGACTAAGATT+TGG + chr6.1:50694130-50694149 MS.gene86608:CDS 30.0%
! CAAATCTTAGTCTTCTTGTT+TGG - chr6.1:50694132-50694151 None:intergenic 30.0%
AAGAAGACTAAGATTTGGCT+AGG + chr6.1:50694135-50694154 MS.gene86608:CDS 35.0%
ACCTCTTCATCTTGAAAATC+TGG - chr6.1:50694528-50694547 None:intergenic 35.0%
AGTTCATTTGCGAATTCAGA+GGG + chr6.1:50693949-50693968 MS.gene86608:CDS 35.0%
GAAGAGGAACATAGACAAAT+GGG + chr6.1:50694089-50694108 MS.gene86608:CDS 35.0%
GATGACTAATGACATTGACA+CGG + chr6.1:50694347-50694366 MS.gene86608:CDS 35.0%
TGAATTCGCAAATGAACTCT+CGG - chr6.1:50693947-50693966 None:intergenic 35.0%
TGTGGATAGGAAGAGTTATT+AGG - chr6.1:50693904-50693923 None:intergenic 35.0%
! TTGTATATCTTTTGCCTGAG+TGG - chr6.1:50694280-50694299 None:intergenic 35.0%
!! AAGATGAAGAGGTATCACTA+TGG + chr6.1:50694535-50694554 MS.gene86608:CDS 35.0%
!! TCCAGATTTTCAAGATGAAG+AGG + chr6.1:50694524-50694543 MS.gene86608:CDS 35.0%
AATGAACTCTCGGAGGAATT+TGG - chr6.1:50693937-50693956 None:intergenic 40.0%
ACAAATGGGTGTGTGAAATG+AGG + chr6.1:50694103-50694122 MS.gene86608:CDS 40.0%
ATGTCTCCTACACATAGCTT+TGG + chr6.1:50694465-50694484 MS.gene86608:CDS 40.0%
CAAATGGGTGTGTGAAATGA+GGG + chr6.1:50694104-50694123 MS.gene86608:CDS 40.0%
GAGTTCATTTGCGAATTCAG+AGG + chr6.1:50693948-50693967 MS.gene86608:CDS 40.0%
GGAAGAGGAACATAGACAAA+TGG + chr6.1:50694088-50694107 MS.gene86608:CDS 40.0%
TATACAAAAAGCTGCTGCAC+AGG + chr6.1:50694293-50694312 MS.gene86608:CDS 40.0%
TCATACCCAAAGCTATGTGT+AGG - chr6.1:50694474-50694493 None:intergenic 40.0%
TGTATGGAAGAGGAAGAAGA+GGG + chr6.1:50694402-50694421 MS.gene86608:CDS 40.0%
TGTCTCCTACACATAGCTTT+GGG + chr6.1:50694466-50694485 MS.gene86608:CDS 40.0%
TTGTATGGAAGAGGAAGAAG+AGG + chr6.1:50694401-50694420 MS.gene86608:CDS 40.0%
! TATATCTTTTGCCTGAGTGG+TGG - chr6.1:50694277-50694296 None:intergenic 40.0%
! TTAGTCATCGAAGTCTTGTC+CGG - chr6.1:50694336-50694355 None:intergenic 40.0%
ATGTTGCTGCGATGGCATTA+AGG + chr6.1:50694196-50694215 MS.gene86608:CDS 45.0%
ATTCGCAAATGAACTCTCGG+AGG - chr6.1:50693944-50693963 None:intergenic 45.0%
CAATTTCCAACGAGGAAGTG+AGG + chr6.1:50693986-50694005 MS.gene86608:CDS 45.0%
CTCGGAGGAATTTGGAGAAA+GGG - chr6.1:50693929-50693948 None:intergenic 45.0%
GAGTAGGACTTGTATGGAAG+AGG + chr6.1:50694392-50694411 MS.gene86608:CDS 45.0%
GCCAGAGTTGTTGAGGAATA+TGG + chr6.1:50694437-50694456 MS.gene86608:CDS 45.0%
GCCATATTCCTCAACAACTC+TGG - chr6.1:50694441-50694460 None:intergenic 45.0%
GTATGGAAGAGGAAGAAGAG+GGG + chr6.1:50694403-50694422 MS.gene86608:CDS 45.0%
TATGGAAGAGGAAGAAGAGG+GGG + chr6.1:50694404-50694423 MS.gene86608:CDS 45.0%
TCGGAGGAATTTGGAGAAAG+GGG - chr6.1:50693928-50693947 None:intergenic 45.0%
TCTCGGAGGAATTTGGAGAA+AGG - chr6.1:50693930-50693949 None:intergenic 45.0%
TGAACATGCCAGAGTTGTTG+AGG + chr6.1:50694430-50694449 MS.gene86608:CDS 45.0%
TGTTGCTGCGATGGCATTAA+GGG + chr6.1:50694197-50694216 MS.gene86608:CDS 45.0%
AGCTAACCTCACTTCCTCGT+TGG - chr6.1:50693995-50694014 None:intergenic 50.0%
CGGAGGAATTTGGAGAAAGG+GGG - chr6.1:50693927-50693946 None:intergenic 50.0%
GAATTTGGAGAAAGGGGGTG+TGG - chr6.1:50693922-50693941 None:intergenic 50.0%
GGAGCAGAGTAGGACTTGTA+TGG + chr6.1:50694386-50694405 MS.gene86608:CDS 50.0%
GGAGTCTGCAAAGTTGAGAC+AGG - chr6.1:50694232-50694251 None:intergenic 50.0%
GGGGATGTCAATTTCCAACG+AGG + chr6.1:50693978-50693997 MS.gene86608:CDS 50.0%
GTTGCTGCGATGGCATTAAG+GGG + chr6.1:50694198-50694217 MS.gene86608:CDS 50.0%
TGACACGGCTATTGCCACTA+CGG + chr6.1:50694362-50694381 MS.gene86608:CDS 50.0%
TGCAGGGAGGAAGAAGTTCA+AGG + chr6.1:50694035-50694054 MS.gene86608:CDS 50.0%
TTCCTCACACCCCTGTATAC+CGG - chr6.1:50694072-50694091 None:intergenic 50.0%
! CACTTTTCCAACTGCCGAGA+TGG + chr6.1:50694158-50694177 MS.gene86608:CDS 50.0%
! TATACAGGGGTGTGAGGAAG+AGG + chr6.1:50694073-50694092 MS.gene86608:CDS 50.0%
CCTGAGTGGTGGCAGGTATA+GGG - chr6.1:50694266-50694285 None:intergenic 55.0%
CGAATTCAGAGGGCTCTCAG+GGG + chr6.1:50693959-50693978 MS.gene86608:CDS 55.0%
GCGAATTCAGAGGGCTCTCA+GGG + chr6.1:50693958-50693977 MS.gene86608:CDS 55.0%
GGCACATGATGTTGCTGCGA+TGG + chr6.1:50694188-50694207 MS.gene86608:CDS 55.0%
TCAACTTTGCAGACTCCGCG+TGG + chr6.1:50694235-50694254 MS.gene86608:CDS 55.0%
TCCTCACACCCCTGTATACC+GGG - chr6.1:50694071-50694090 None:intergenic 55.0%
TCGCAGCAACATCATGTGCC+CGG - chr6.1:50694188-50694207 None:intergenic 55.0%
TGCGAATTCAGAGGGCTCTC+AGG + chr6.1:50693957-50693976 MS.gene86608:CDS 55.0%
TTCCTCCCTGCACGCTTCTT+TGG - chr6.1:50694027-50694046 None:intergenic 55.0%
! ACGACTCCAAAGAAGCGTGC+AGG + chr6.1:50694018-50694037 MS.gene86608:CDS 55.0%
! CGACTCCAAAGAAGCGTGCA+GGG + chr6.1:50694019-50694038 MS.gene86608:CDS 55.0%
! TCTTTTGCCTGAGTGGTGGC+AGG - chr6.1:50694273-50694292 None:intergenic 55.0%
! TGGAGAAAGGGGGTGTGGAT+AGG - chr6.1:50693917-50693936 None:intergenic 55.0%
ACTCGCCACCCGGTATACAG+GGG + chr6.1:50694060-50694079 MS.gene86608:CDS 60.0%
AGACTCGCCACCCGGTATAC+AGG + chr6.1:50694058-50694077 MS.gene86608:CDS 60.0%
AGGTATAGGGAGACGCCACG+CGG - chr6.1:50694253-50694272 None:intergenic 60.0%
CACGGCTATTGCCACTACGG+AGG + chr6.1:50694365-50694384 MS.gene86608:CDS 60.0%
CCACTACGGAGGAGCAGAGT+AGG + chr6.1:50694376-50694395 MS.gene86608:CDS 60.0%
CCCTATACCTGCCACCACTC+AGG + chr6.1:50694263-50694282 MS.gene86608:CDS 60.0%
CCTACTCTGCTCCTCCGTAG+TGG - chr6.1:50694379-50694398 None:intergenic 60.0%
CGCAGCAACATCATGTGCCC+GGG - chr6.1:50694187-50694206 None:intergenic 60.0%
GACTCGCCACCCGGTATACA+GGG + chr6.1:50694059-50694078 MS.gene86608:CDS 60.0%
GCCTGAGTGGTGGCAGGTAT+AGG - chr6.1:50694267-50694286 None:intergenic 60.0%
GTCCGGTCTGAAAGCCTCTG+CGG - chr6.1:50694319-50694338 None:intergenic 60.0%
GTTCAAGGAGACTCGCCACC+CGG + chr6.1:50694050-50694069 MS.gene86608:CDS 60.0%
TCACACCCCTGTATACCGGG+TGG - chr6.1:50694068-50694087 None:intergenic 60.0%
! ACCCGGTATACAGGGGTGTG+AGG + chr6.1:50694067-50694086 MS.gene86608:CDS 60.0%
! CTCCAAAGAAGCGTGCAGGG+AGG + chr6.1:50694022-50694041 MS.gene86608:CDS 60.0%
AACTGCCGAGATGGCAGCCC+GGG + chr6.1:50694167-50694186 MS.gene86608:CDS 65.0%
ATGTGCCCGGGCTGCCATCT+CGG - chr6.1:50694175-50694194 None:intergenic 65.0%
CAACTGCCGAGATGGCAGCC+CGG + chr6.1:50694166-50694185 MS.gene86608:CDS 65.0%
GGCCGCAGAGGCTTTCAGAC+CGG + chr6.1:50694314-50694333 MS.gene86608:CDS 65.0%
AGCTGCTGCACAGGCCGCAG+AGG + chr6.1:50694302-50694321 MS.gene86608:CDS 70.0%
CGGGCTGCCATCTCGGCAGT+TGG - chr6.1:50694168-50694187 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 50693886 50694566 50693886 ID=MS.gene86608
chr6.1 mRNA 50693886 50694566 50693886 ID=MS.gene86608.t1;Parent=MS.gene86608
chr6.1 exon 50693886 50694566 50693886 ID=MS.gene86608.t1.exon1;Parent=MS.gene86608.t1
chr6.1 CDS 50693886 50694566 50693886 ID=cds.MS.gene86608.t1;Parent=MS.gene86608.t1
Gene Sequence

>MS.gene86608

ATGGATATGTTTACACCTAATAACTCTTCCTATCCACACCCCCTTTCTCCAAATTCCTCCGAGAGTTCATTTGCGAATTCAGAGGGCTCTCAGGGGATGTCAATTTCCAACGAGGAAGTGAGGTTAGCTGCGACGACTCCAAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTATACAGGGGTGTGAGGAAGAGGAACATAGACAAATGGGTGTGTGAAATGAGGGAGCCAAACAAGAAGACTAAGATTTGGCTAGGCACTTTTCCAACTGCCGAGATGGCAGCCCGGGCACATGATGTTGCTGCGATGGCATTAAGGGGACGCTACGCCTGTCTCAACTTTGCAGACTCCGCGTGGCGTCTCCCTATACCTGCCACCACTCAGGCAAAAGATATACAAAAAGCTGCTGCACAGGCCGCAGAGGCTTTCAGACCGGACAAGACTTCGATGACTAATGACATTGACACGGCTATTGCCACTACGGAGGAGCAGAGTAGGACTTGTATGGAAGAGGAAGAAGAGGGGGCGATGAACATGCCAGAGTTGTTGAGGAATATGGCGCTAATGTCTCCTACACATAGCTTTGGGTATGATGAGTATGAAGATATTCATGTTCAAGACTTTCCAGATTTTCAAGATGAAGAGGTATCACTATGGAATTATTAA

Protein sequence

>MS.gene86608.t1

MDMFTPNNSSYPHPLSPNSSESSFANSEGSQGMSISNEEVRLAATTPKKRAGRKKFKETRHPVYRGVRKRNIDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSAWRLPIPATTQAKDIQKAAAQAAEAFRPDKTSMTNDIDTAIATTEEQSRTCMEEEEEGAMNMPELLRNMALMSPTHSFGYDEYEDIHVQDFPDFQDEEVSLWNY