AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30852


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30852.t1 MTR_6g465690 87.826 230 22 3 1 227 1 227 1.30e-140 394
MS.gene30852.t1 MTR_6g466000 76.279 215 35 3 26 230 19 227 2.01e-113 324
MS.gene30852.t1 MTR_6g465450 73.756 221 48 4 3 222 1 212 4.23e-110 316
MS.gene30852.t1 MTR_6g465420 75.132 189 46 1 34 222 24 211 1.24e-104 303
MS.gene30852.t1 MTR_6g465460 74.603 189 44 2 35 222 25 210 3.06e-103 300
MS.gene30852.t1 MTR_6g465430 75.263 190 44 2 34 222 24 211 1.89e-101 294
MS.gene30852.t1 MTR_6g466130 75.481 208 47 2 23 230 25 228 7.10e-101 292
MS.gene30852.t1 MTR_6g465530 72.222 198 46 3 37 230 6 198 1.75e-93 272
MS.gene30852.t1 MTR_6g465510 71.981 207 41 3 37 230 6 208 1.14e-92 271
MS.gene30852.t1 MTR_6g465990 65.138 218 40 4 23 230 2 193 1.33e-84 249
MS.gene30852.t1 MTR_6g465850 58.730 252 46 5 33 230 32 279 3.48e-78 236
MS.gene30852.t1 MTR_1g101600 65.079 189 59 3 42 230 19 200 1.09e-76 230
MS.gene30852.t1 MTR_6g466020 54.369 206 66 4 23 227 2 180 4.11e-67 205
MS.gene30852.t1 MTR_5g010930 43.981 216 82 7 39 230 24 224 6.01e-52 168
MS.gene30852.t1 MTR_5g010940 41.850 227 109 6 19 230 9 227 2.08e-50 164
MS.gene30852.t1 MTR_4g102660 49.327 223 89 9 21 230 7 218 3.84e-50 163
MS.gene30852.t1 MTR_5g010910 41.778 225 107 7 22 230 6 222 4.84e-48 158
MS.gene30852.t1 MTR_3g110205 57.292 96 41 0 59 154 38 133 3.94e-33 118
MS.gene30852.t1 MTR_8g006410 65.385 78 27 0 61 138 49 126 6.83e-32 115
MS.gene30852.t1 MTR_7g046260 64.198 81 29 0 58 138 55 135 2.10e-31 115
MS.gene30852.t1 MTR_7g117690 63.750 80 29 0 59 138 23 102 6.13e-31 112
MS.gene30852.t1 MTR_2g085015 40.964 166 73 6 58 200 41 204 7.21e-31 114
MS.gene30852.t1 MTR_5g012910 62.025 79 30 0 60 138 24 102 4.96e-30 110
MS.gene30852.t1 MTR_8g013860 53.608 97 44 1 43 138 25 121 7.09e-29 108
MS.gene30852.t1 MTR_8g102800 53.465 101 47 0 54 154 27 127 2.63e-28 107
MS.gene30852.t1 MTR_2g101340 51.485 101 43 2 44 138 15 115 4.70e-28 105
MS.gene30852.t1 MTR_6g088405 58.974 78 32 0 61 138 41 118 2.24e-27 104
MS.gene30852.t1 MTR_8g027465 52.000 100 42 2 42 138 20 116 3.14e-27 103
MS.gene30852.t1 MTR_4g102670 40.000 175 83 6 60 230 11 167 6.29e-27 102
MS.gene30852.t1 MTR_4g100650 58.974 78 32 0 61 138 71 148 2.38e-25 100
MS.gene30852.t1 MTR_6g088425 48.246 114 49 1 42 145 17 130 1.05e-23 95.5
MS.gene30852.t1 MTR_4g035430 47.423 97 46 1 49 145 22 113 1.79e-22 91.7
MS.gene30852.t1 MTR_1g006660 59.494 79 32 0 60 138 43 121 5.92e-22 91.3
MS.gene30852.t1 MTR_5g008590 36.667 180 96 4 64 229 11 186 1.18e-19 83.6
MS.gene30852.t1 MTR_5g008550 46.000 100 52 1 64 161 21 120 2.61e-19 82.8
MS.gene30852.t1 MTR_1g014780 36.975 119 67 2 63 174 37 154 5.40e-18 80.1
MS.gene30852.t1 MTR_1g101550 37.143 175 101 3 64 230 57 230 1.25e-17 79.0
MS.gene30852.t1 MTR_2g435590 37.008 127 78 1 8 134 42 166 3.01e-17 78.6
MS.gene30852.t1 MTR_5g008470 44.048 84 47 0 66 149 77 160 6.21e-17 76.3
MS.gene30852.t1 MTR_3g105510 44.186 86 44 1 64 145 37 122 1.70e-16 76.3
MS.gene30852.t1 MTR_3g102100 58.929 56 23 0 64 119 45 100 1.79e-16 74.7
MS.gene30852.t1 MTR_1g014820 42.529 87 46 1 63 145 26 112 2.65e-16 75.9
MS.gene30852.t1 MTR_1g060910 35.503 169 72 6 48 200 3 150 3.33e-16 73.9
MS.gene30852.t1 MTR_5g083340 58.621 58 24 0 64 121 85 142 3.45e-16 77.0
MS.gene30852.t1 MTR_2g043050 44.706 85 47 0 63 147 18 102 5.66e-16 74.3
MS.gene30852.t1 MTR_1g090170 42.697 89 45 1 59 147 147 229 6.43e-16 75.5
MS.gene30852.t1 MTR_1g014860 34.454 119 69 2 59 170 17 133 1.14e-15 73.6
MS.gene30852.t1 MTR_1g090170 42.697 89 45 1 59 147 234 316 1.41e-15 75.1
MS.gene30852.t1 MTR_1g019110 43.333 90 43 1 64 145 44 133 1.50e-15 72.4
MS.gene30852.t1 MTR_2g105380 42.222 90 47 1 52 136 105 194 1.64e-15 74.7
MS.gene30852.t1 MTR_7g020980 53.125 64 29 1 57 119 43 106 1.74e-15 72.0
MS.gene30852.t1 MTR_5g062700 55.932 59 26 0 63 121 172 230 2.07e-15 74.7
MS.gene30852.t1 MTR_3g074130 57.895 57 24 0 63 119 149 205 2.12e-15 74.3
MS.gene30852.t1 MTR_8g090350 46.053 76 38 1 63 135 112 187 2.25e-15 73.9
MS.gene30852.t1 MTR_1g087920 35.772 123 74 2 11 131 25 144 2.55e-15 73.9
MS.gene30852.t1 MTR_8g092460 55.000 60 27 0 64 123 145 204 3.01e-15 73.6
MS.gene30852.t1 MTR_2g090235 55.932 59 26 0 63 121 217 275 3.75e-15 73.9
MS.gene30852.t1 MTR_7g021010 53.125 64 29 1 57 119 43 106 3.85e-15 71.2
MS.gene30852.t1 MTR_3g105480 44.048 84 43 1 66 145 33 116 6.20e-15 71.6
MS.gene30852.t1 MTR_2g043030 40.659 91 54 0 63 153 18 108 7.21e-15 70.9
MS.gene30852.t1 MTR_7g021010 51.667 60 29 0 60 119 8 67 8.71e-15 69.3
MS.gene30852.t1 MTR_1g014800 51.667 60 29 0 63 122 30 89 8.79e-15 71.2
MS.gene30852.t1 MTR_4g086220 57.143 56 24 0 64 119 96 151 9.95e-15 71.2
MS.gene30852.t1 MTR_5g016750 55.357 56 25 0 64 119 25 80 1.00e-14 70.1
MS.gene30852.t1 MTR_1g028560 41.463 82 43 1 64 145 115 191 1.11e-14 72.4
MS.gene30852.t1 MTR_5g082950 58.929 56 23 0 64 119 66 121 1.67e-14 71.6
MS.gene30852.t1 MTR_3g053690 55.000 60 27 0 60 119 23 82 1.92e-14 70.1
MS.gene30852.t1 MTR_2g089170 57.143 56 24 0 64 119 65 120 2.06e-14 69.3
MS.gene30852.t1 MTR_2g078680 57.143 56 24 0 64 119 31 86 2.49e-14 69.7
MS.gene30852.t1 MTR_4g086160 55.357 56 25 0 64 119 96 151 2.92e-14 69.7
MS.gene30852.t1 MTR_4g086165 42.105 95 47 1 25 119 51 137 3.00e-14 69.3
MS.gene30852.t1 MTR_5g083330 47.945 73 38 0 49 121 20 92 3.57e-14 70.5
MS.gene30852.t1 MTR_4g086190 55.357 56 25 0 64 119 96 151 3.95e-14 69.3
MS.gene30852.t1 MTR_1g048610 37.500 104 62 2 17 119 44 145 4.46e-14 69.3
MS.gene30852.t1 MTR_7g028925 53.333 60 25 1 63 122 28 84 4.49e-14 66.2
MS.gene30852.t1 MTR_8g022820 41.463 82 45 1 54 135 113 191 5.86e-14 70.5
MS.gene30852.t1 MTR_8g022820 41.463 82 45 1 54 135 114 192 5.94e-14 70.5
MS.gene30852.t1 MTR_8g022820 41.463 82 45 1 54 135 114 192 5.94e-14 70.5
MS.gene30852.t1 MTR_0939s0010 55.357 56 25 0 64 119 65 120 6.97e-14 68.2
MS.gene30852.t1 MTR_7g092190 57.143 56 24 0 64 119 30 85 8.51e-14 69.3
MS.gene30852.t1 MTR_1g074310 56.140 57 24 1 64 119 21 77 9.53e-14 66.6
MS.gene30852.t1 MTR_2g438180 55.932 59 25 1 64 121 14 72 2.25e-13 65.5
MS.gene30852.t1 MTR_2g015050 47.826 69 35 1 52 119 122 190 2.72e-13 67.8
MS.gene30852.t1 MTR_4g114570 46.479 71 31 1 64 134 7 70 3.20e-13 66.6
MS.gene30852.t1 MTR_5g009620 48.000 75 29 2 51 119 97 167 3.50e-13 67.8
MS.gene30852.t1 MTR_4g078710 53.571 56 26 0 64 119 28 83 3.99e-13 66.6
MS.gene30852.t1 MTR_3g090760 39.560 91 46 1 40 130 98 179 4.87e-13 67.8
MS.gene30852.t1 MTR_4g010640 53.571 56 26 0 64 119 7 62 5.17e-13 66.2
MS.gene30852.t1 MTR_3g106290 57.143 56 24 0 64 119 8 63 5.40e-13 65.5
MS.gene30852.t1 MTR_4g100450 42.169 83 47 1 38 119 128 210 5.40e-13 67.4
MS.gene30852.t1 MTR_2g043020 38.710 93 57 0 63 155 18 110 6.01e-13 65.9
MS.gene30852.t1 MTR_1g070070 52.632 57 26 1 64 119 21 77 6.27e-13 64.3
MS.gene30852.t1 MTR_2g014340 53.571 56 26 0 64 119 19 74 6.74e-13 65.5
MS.gene30852.t1 MTR_4g008860 57.143 56 24 0 64 119 8 63 7.77e-13 65.5
MS.gene30852.t1 MTR_2g043040 40.000 85 51 0 63 147 18 102 7.91e-13 65.9
MS.gene30852.t1 MTR_1g074230 54.386 57 25 1 64 119 19 75 1.39e-12 63.2
MS.gene30852.t1 MTR_2g103700 51.786 56 27 0 64 119 7 62 1.50e-12 63.9
MS.gene30852.t1 MTR_2g014300 55.357 56 25 0 64 119 15 70 1.73e-12 63.9
MS.gene30852.t1 MTR_3g072610 40.741 108 60 2 45 148 6 113 2.23e-12 64.3
MS.gene30852.t1 MTR_1g074250 50.820 61 28 1 61 119 16 76 2.25e-12 62.8
MS.gene30852.t1 MTR_4g100420 42.169 83 47 1 38 119 131 213 3.25e-12 65.1
MS.gene30852.t1 MTR_2g016730 43.590 78 43 1 42 119 2 78 1.04e-11 63.9
MS.gene30852.t1 MTR_5g085100 38.679 106 49 3 24 129 15 104 1.43e-11 63.2
MS.gene30852.t1 MTR_1g090290 48.387 62 29 2 59 119 110 169 1.74e-11 61.6
MS.gene30852.t1 MTR_5g085070 48.485 66 27 1 64 129 51 109 2.44e-11 62.4
MS.gene30852.t1 MTR_6g041970 39.560 91 42 1 64 154 18 95 2.72e-11 58.9
MS.gene30852.t1 MTR_8g099215 38.710 93 51 1 33 119 70 162 2.89e-11 62.4
MS.gene30852.t1 MTR_4g054360 46.154 65 34 1 56 119 116 180 3.73e-11 61.6
MS.gene30852.t1 MTR_5g075570 45.000 60 33 0 60 119 120 179 4.32e-11 61.6
MS.gene30852.t1 MTR_8g069360 50.000 56 28 0 64 119 44 99 4.58e-11 62.0
MS.gene30852.t1 MTR_4g111915 44.068 59 33 0 64 122 53 111 4.63e-11 59.3
MS.gene30852.t1 MTR_4g088005 39.000 100 55 3 26 119 14 113 5.60e-11 58.5
MS.gene30852.t1 MTR_6g012970 38.202 89 47 1 31 119 13 93 6.37e-11 61.6
MS.gene30852.t1 MTR_5g032820 50.877 57 28 0 64 120 46 102 9.89e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30852.t1 AT4G25470 55.051 198 72 4 41 230 28 216 1.14e-65 202
MS.gene30852.t1 AT4G25480 53.704 216 81 5 22 230 13 216 1.16e-63 197
MS.gene30852.t1 AT5G51990 53.000 200 76 5 41 230 31 222 1.04e-62 195
MS.gene30852.t1 AT4G25490 56.566 198 67 5 42 230 26 213 3.29e-59 186
MS.gene30852.t1 AT1G63030 48.980 196 81 4 37 230 3 181 1.65e-58 183
MS.gene30852.t1 AT1G63030 48.980 196 81 4 37 230 3 181 1.65e-58 183
MS.gene30852.t1 AT1G12610 47.343 207 94 5 37 230 3 207 3.37e-56 178
MS.gene30852.t1 AT5G25810 61.628 86 33 0 60 145 32 117 4.55e-33 119
MS.gene30852.t1 AT5G11590 50.427 117 54 1 33 145 16 132 1.90e-32 118
MS.gene30852.t1 AT2G44940 54.286 105 48 0 53 157 89 193 3.56e-31 116
MS.gene30852.t1 AT4G32800 50.467 107 47 1 51 151 6 112 3.63e-31 114
MS.gene30852.t1 AT2G35700 45.255 137 71 1 59 195 40 172 2.95e-29 108
MS.gene30852.t1 AT3G16280 59.494 79 32 0 60 138 57 135 7.38e-28 106
MS.gene30852.t1 AT1G01250 60.000 80 32 0 59 138 40 119 7.48e-28 105
MS.gene30852.t1 AT3G16280 47.015 134 66 2 60 191 75 205 1.09e-27 106
MS.gene30852.t1 AT4G16750 58.750 80 33 0 59 138 35 114 1.33e-27 103
MS.gene30852.t1 AT2G36450 41.398 186 97 5 52 230 3 183 4.07e-27 102
MS.gene30852.t1 AT5G52020 40.113 177 94 5 60 230 61 231 6.68e-26 101
MS.gene30852.t1 AT2G25820 60.526 76 30 0 63 138 25 100 1.21e-25 100
MS.gene30852.t1 AT3G60490 60.000 75 30 0 64 138 71 145 1.68e-25 100
MS.gene30852.t1 AT1G71450 44.068 118 57 1 64 172 24 141 2.24e-22 90.5
MS.gene30852.t1 AT1G77200 46.218 119 61 2 20 138 2 117 1.60e-20 87.0
MS.gene30852.t1 AT2G47520 43.299 97 51 1 23 119 13 105 2.24e-20 85.1
MS.gene30852.t1 AT1G21910 47.826 92 41 1 64 148 50 141 3.73e-19 83.2
MS.gene30852.t1 AT1G33760 50.549 91 45 0 64 154 20 110 5.77e-19 81.6
MS.gene30852.t1 AT1G12630 38.743 191 84 6 60 230 15 192 1.06e-18 81.3
MS.gene30852.t1 AT4G13620 41.085 129 60 4 6 121 164 289 1.90e-18 83.6
MS.gene30852.t1 AT1G46768 57.143 63 26 1 59 121 27 88 6.38e-18 77.8
MS.gene30852.t1 AT1G46768 57.143 63 26 1 59 121 27 88 7.57e-18 77.8
MS.gene30852.t1 AT1G46768 57.143 63 26 1 59 121 27 88 7.57e-18 77.8
MS.gene30852.t1 AT3G16770 52.564 78 30 1 44 121 66 136 8.19e-18 80.1
MS.gene30852.t1 AT5G21960 46.429 84 45 0 62 145 5 88 4.44e-17 77.4
MS.gene30852.t1 AT4G39780 55.738 61 27 0 59 119 88 148 6.23e-17 77.8
MS.gene30852.t1 AT1G74930 43.023 86 49 0 64 149 21 106 6.31e-17 76.3
MS.gene30852.t1 AT3G50260 34.959 123 68 3 64 186 21 131 9.79e-17 74.7
MS.gene30852.t1 AT1G22190 57.627 59 25 0 63 121 82 140 1.25e-16 77.0
MS.gene30852.t1 AT1G19210 32.500 160 88 3 64 223 12 151 1.50e-16 75.1
MS.gene30852.t1 AT4G06746 51.613 62 30 0 64 125 36 97 3.97e-16 73.2
MS.gene30852.t1 AT4G36900 55.000 60 27 0 60 119 26 85 8.21e-16 73.6
MS.gene30852.t1 AT2G22200 55.932 59 26 0 63 121 70 128 8.32e-16 74.7
MS.gene30852.t1 AT1G78080 55.932 59 26 0 63 121 151 209 1.40e-15 74.7
MS.gene30852.t1 AT2G23340 57.143 56 24 0 64 119 28 83 1.59e-15 72.4
MS.gene30852.t1 AT5G67190 55.357 56 25 0 64 119 21 76 1.87e-15 72.4
MS.gene30852.t1 AT3G11020 53.030 66 31 0 58 123 72 137 2.35e-15 74.3
MS.gene30852.t1 AT2G20880 33.835 133 81 2 40 172 165 290 2.53e-15 74.3
MS.gene30852.t1 AT1G36060 57.895 57 24 0 63 119 142 198 4.31e-15 73.2
MS.gene30852.t1 AT2G33710 46.250 80 38 1 59 133 65 144 5.62e-15 71.6
MS.gene30852.t1 AT5G65130 43.158 95 42 2 39 121 74 168 5.69e-15 72.4
MS.gene30852.t1 AT1G71520 33.566 143 79 4 58 194 8 140 5.85e-15 70.1
MS.gene30852.t1 AT5G65130 43.158 95 42 2 39 121 76 170 5.93e-15 72.4
MS.gene30852.t1 AT2G33710 54.098 61 28 0 59 119 65 125 6.20e-15 71.6
MS.gene30852.t1 AT5G05410 55.932 59 26 0 64 122 79 137 6.26e-15 72.8
MS.gene30852.t1 AT4G28140 44.444 81 40 1 46 121 120 200 7.99e-15 72.4
MS.gene30852.t1 AT5G05410 57.143 56 24 0 64 119 79 134 8.03e-15 72.8
MS.gene30852.t1 AT5G13330 49.315 73 32 2 60 132 37 104 2.21e-14 70.1
MS.gene30852.t1 AT5G07580 38.583 127 70 4 15 135 58 182 2.21e-14 69.7
MS.gene30852.t1 AT3G15210 57.143 56 24 0 64 119 25 80 3.35e-14 69.7
MS.gene30852.t1 AT1G22810 39.785 93 41 2 64 148 14 99 4.19e-14 67.8
MS.gene30852.t1 AT3G61630 32.192 146 81 4 64 197 105 244 4.48e-14 70.5
MS.gene30852.t1 AT3G57600 55.357 56 25 0 64 119 28 83 5.47e-14 69.7
MS.gene30852.t1 AT5G61890 53.333 60 26 1 60 119 88 145 5.56e-14 69.3
MS.gene30852.t1 AT5G61600 57.377 61 23 2 60 119 86 144 7.52e-14 68.9
MS.gene30852.t1 AT5G44210 55.357 56 25 0 64 119 33 88 8.67e-14 68.2
MS.gene30852.t1 AT1G72360 48.485 66 31 1 54 119 18 80 8.71e-14 68.2
MS.gene30852.t1 AT1G72360 37.647 85 53 0 35 119 45 129 1.48e-13 68.6
MS.gene30852.t1 AT1G15360 55.357 56 25 0 64 119 7 62 1.57e-13 67.4
MS.gene30852.t1 AT1G15360 55.357 56 25 0 64 119 7 62 1.57e-13 67.4
MS.gene30852.t1 AT1G72360 48.529 68 31 2 52 119 68 131 1.59e-13 68.2
MS.gene30852.t1 AT5G64750 38.384 99 55 2 74 172 195 287 1.74e-13 69.3
MS.gene30852.t1 AT5G51190 52.308 65 30 1 56 119 64 128 1.95e-13 67.4
MS.gene30852.t1 AT4G11140 38.710 93 44 2 64 149 87 173 2.25e-13 68.2
MS.gene30852.t1 AT4G27950 53.571 56 26 0 64 119 118 173 2.96e-13 68.2
MS.gene30852.t1 AT5G47230 53.125 64 27 2 57 119 151 212 3.87e-13 67.8
MS.gene30852.t1 AT1G03800 47.059 68 33 1 52 119 44 108 4.31e-13 67.0
MS.gene30852.t1 AT5G43410 51.667 60 28 1 61 119 12 71 4.41e-13 64.7
MS.gene30852.t1 AT1G75490 45.833 72 39 0 63 134 41 112 5.90e-13 65.9
MS.gene30852.t1 AT4G31060 50.000 56 28 0 64 119 27 82 7.88e-13 65.1
MS.gene30852.t1 AT5G19790 46.154 78 38 2 45 121 5 79 1.19e-12 65.9
MS.gene30852.t1 AT5G25390 51.786 56 27 0 64 119 7 62 1.31e-12 64.7
MS.gene30852.t1 AT3G23230 52.632 57 26 1 64 119 20 76 1.46e-12 63.5
MS.gene30852.t1 AT5G25190 55.357 56 25 0 64 119 8 63 2.85e-12 63.5
MS.gene30852.t1 AT3G20310 50.000 62 31 0 58 119 21 82 2.95e-12 64.7
MS.gene30852.t1 AT5G53290 50.877 57 28 0 64 120 125 181 2.97e-12 65.5
MS.gene30852.t1 AT1G28360 55.357 56 25 0 64 119 12 67 3.71e-12 63.5
MS.gene30852.t1 AT5G18450 51.724 58 28 0 63 120 33 90 4.33e-12 64.7
MS.gene30852.t1 AT1G77640 48.889 90 40 2 64 147 43 132 5.19e-12 63.9
MS.gene30852.t1 AT2G46310 31.343 134 83 3 64 194 99 226 5.54e-12 64.3
MS.gene30852.t1 AT4G17490 51.562 64 28 2 57 119 132 193 6.67e-12 63.9
MS.gene30852.t1 AT1G28370 51.786 56 27 0 64 119 20 75 6.72e-12 62.4
MS.gene30852.t1 AT5G61590 48.276 87 42 2 50 135 95 179 7.63e-12 62.8
MS.gene30852.t1 AT4G23750 49.123 57 29 0 64 120 122 178 1.03e-11 63.9
MS.gene30852.t1 AT4G23750 49.123 57 29 0 64 120 122 178 1.03e-11 63.9
MS.gene30852.t1 AT2G40340 50.000 56 28 0 64 119 14 69 1.24e-11 63.2
MS.gene30852.t1 AT2G40340 50.000 56 28 0 64 119 14 69 1.24e-11 63.2
MS.gene30852.t1 AT2G40340 50.000 56 28 0 64 119 14 69 1.24e-11 63.2
MS.gene30852.t1 AT1G28370 51.786 56 27 0 64 119 58 113 1.25e-11 62.4
MS.gene30852.t1 AT2G40350 45.833 72 32 1 64 135 74 138 1.30e-11 61.2
MS.gene30852.t1 AT1G12890 42.308 78 42 1 42 119 2 76 1.39e-11 62.4
MS.gene30852.t1 AT1G50640 53.571 56 26 0 64 119 28 83 1.48e-11 62.4
MS.gene30852.t1 AT2G40350 45.833 72 32 1 64 135 67 131 1.52e-11 60.8
MS.gene30852.t1 AT5G47220 52.632 57 26 1 64 119 117 173 1.94e-11 62.4
MS.gene30852.t1 AT2G40340 50.000 56 28 0 64 119 72 127 1.96e-11 62.8
MS.gene30852.t1 AT2G40340 50.000 56 28 0 64 119 72 127 2.56e-11 62.8
MS.gene30852.t1 AT2G40340 50.000 56 28 0 64 119 79 134 2.75e-11 62.8
MS.gene30852.t1 AT5G07310 51.562 64 29 1 60 123 90 151 7.05e-11 60.8

Find 77 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAACTCTCGGTGGAATT+TGG 0.218037 6.2:-58423828 None:intergenic
ATGTTGCTTCAATGGCATTA+AGG 0.227810 6.2:+58424090 MS.gene30852:CDS
TTCCTCCCAGCACGCTTCTT+TGG 0.236811 6.2:-58423918 None:intergenic
GGAAGAGGAACTTAGATAAA+TGG 0.256718 6.2:+58423982 MS.gene30852:CDS
CAAATCTTAGTCTTCTTGTT+TGG 0.292823 6.2:-58424023 None:intergenic
GCCAGAGTTGTTGAGGAATA+TGG 0.301561 6.2:+58424343 MS.gene30852:CDS
ACCTCTTCATCTTGAAAATC+TGG 0.311282 6.2:-58424431 None:intergenic
GCCTGAGTGGTGGCAGGTAT+AGG 0.319307 6.2:-58424158 None:intergenic
GACTCGCCACCCGGTATATA+GGG 0.321867 6.2:+58423953 MS.gene30852:CDS
AGACTCGCCACCCGGTATAT+AGG 0.350439 6.2:+58423952 MS.gene30852:CDS
CCTGAGTGGTGGCAGGTATA+GGG 0.356312 6.2:-58424157 None:intergenic
CGGTGGAATTTGGAGAAAAC+TGG 0.366649 6.2:-58423818 None:intergenic
GACTTGTATGGAAGAGGAAG+AGG 0.398759 6.2:+58424298 MS.gene30852:CDS
ATGTGCCCGGGCTGCCATCT+CGG 0.400727 6.2:-58424066 None:intergenic
TGTTGCTTCAATGGCATTAA+GGG 0.407611 6.2:+58424091 MS.gene30852:CDS
AACTGCCGAGATGGCAGCCC+GGG 0.407631 6.2:+58424061 MS.gene30852:CDS
TGCGAATTCAGAGGGCTCTC+AGG 0.415939 6.2:+58423851 MS.gene30852:CDS
CAAACAAGAAGACTAAGATT+TGG 0.423028 6.2:+58424024 MS.gene30852:CDS
GAAGAGGAAGAGGAAGAAGA+GGG 0.430166 6.2:+58424308 MS.gene30852:CDS
GAAGAGGAACTTAGATAAAT+GGG 0.434368 6.2:+58423983 MS.gene30852:CDS
TGCTGGGAGGAAGAAGTTCC+AGG 0.438027 6.2:+58423929 MS.gene30852:CDS
ATGTCTCCTACACATAGCTT+TGG 0.439535 6.2:+58424371 MS.gene30852:CDS
GGCACATGATGTTGCTTCAA+TGG 0.452514 6.2:+58424082 MS.gene30852:CDS
TGTCTCCTACACATAGCTTT+GGG 0.457669 6.2:+58424372 MS.gene30852:CDS
GCTAACCTCACTTCCTCGTT+GGG 0.459051 6.2:-58423885 None:intergenic
ATACCGGGTGGCGAGTCTCC+TGG 0.468976 6.2:-58423947 None:intergenic
TTCCTCACACCCCTATATAC+CGG 0.471420 6.2:-58423963 None:intergenic
GGAGCAGAGTAGGACTTGTA+TGG 0.472667 6.2:+58424286 MS.gene30852:CDS
GGAAGAGGAAGAGGAAGAAG+AGG 0.473659 6.2:+58424307 MS.gene30852:CDS
CGGGCTGCCATCTCGGCAGT+TGG 0.488790 6.2:-58424059 None:intergenic
TTGAAGCAACATCATGTGCC+CGG 0.494126 6.2:-58424079 None:intergenic
ACGACTCCAAAGAAGCGTGC+TGG 0.499803 6.2:+58423912 MS.gene30852:CDS
AGCGGCTGCACAGGCCGCAG+AGG 0.499896 6.2:+58424196 MS.gene30852:CDS
TATATAGGGGTGTGAGGAAG+AGG 0.500596 6.2:+58423967 MS.gene30852:CDS
AGCTAACCTCACTTCCTCGT+TGG 0.500899 6.2:-58423886 None:intergenic
CGACTCCAAAGAAGCGTGCT+GGG 0.504020 6.2:+58423913 MS.gene30852:CDS
GGCCGCAGAGGCTTTCAGAC+CGG 0.508268 6.2:+58424208 MS.gene30852:CDS
AAGATGAAGAGGTATCACTA+TGG 0.512792 6.2:+58424441 MS.gene30852:CDS
GAGTAGGACTTGTATGGAAG+AGG 0.516467 6.2:+58424292 MS.gene30852:CDS
GCCATATTCCTCAACAACTC+TGG 0.516505 6.2:-58424344 None:intergenic
GCGAATTCAGAGGGCTCTCA+GGG 0.519443 6.2:+58423852 MS.gene30852:CDS
CAACTGCCGAGATGGCAGCC+CGG 0.522483 6.2:+58424060 MS.gene30852:CDS
AAGAGGAAGAGGAAGAAGAG+GGG 0.525108 6.2:+58424309 MS.gene30852:CDS
TTAGTCATCGAAGTCTTGTC+CGG 0.525341 6.2:-58424227 None:intergenic
TGAATTCGCAAATGAACTCT+CGG 0.541132 6.2:-58423838 None:intergenic
TAAATGGGTGTGTGAAATGA+GGG 0.541686 6.2:+58423998 MS.gene30852:CDS
GGCTATTGCCACCTCTGCTA+CGG 0.542428 6.2:+58424262 MS.gene30852:CDS
GGAGTCTGCAAAGTTGAGAC+AGG 0.548191 6.2:-58424123 None:intergenic
AGTTCATTTGCGAATTCAGA+GGG 0.549616 6.2:+58423843 MS.gene30852:CDS
AGAGGAAGAGGAAGAAGAGG+GGG 0.554107 6.2:+58424310 MS.gene30852:CDS
GTTCCAGGAGACTCGCCACC+CGG 0.558195 6.2:+58423944 MS.gene30852:CDS
CCCTATACCTGCCACCACTC+AGG 0.559517 6.2:+58424157 MS.gene30852:CDS
CTGCTACGGAGGAGCAGAGT+AGG 0.566112 6.2:+58424276 MS.gene30852:CDS
CTGCTCCTCCGTAGCAGAGG+TGG 0.568749 6.2:-58424270 None:intergenic
TGAAGCAACATCATGTGCCC+GGG 0.576327 6.2:-58424078 None:intergenic
TATTGCCACCTCTGCTACGG+AGG 0.578389 6.2:+58424265 MS.gene30852:CDS
AAGAAGACTAAGATTTGGCT+AGG 0.578791 6.2:+58424029 MS.gene30852:CDS
TCCTCACACCCCTATATACC+GGG 0.585609 6.2:-58423962 None:intergenic
ATAAATGGGTGTGTGAAATG+AGG 0.586819 6.2:+58423997 MS.gene30852:CDS
GAGTTCATTTGCGAATTCAG+AGG 0.592725 6.2:+58423842 MS.gene30852:CDS
TGAACATGCCAGAGTTGTTG+AGG 0.595940 6.2:+58424336 MS.gene30852:CDS
TGATACCCAAAGCTATGTGT+AGG 0.600852 6.2:-58424377 None:intergenic
GTTGCTTCAATGGCATTAAG+GGG 0.609844 6.2:+58424092 MS.gene30852:CDS
ACTCTGCTCCTCCGTAGCAG+AGG 0.628165 6.2:-58424273 None:intergenic
CAATTCCCAACGAGGAAGTG+AGG 0.632492 6.2:+58423880 MS.gene30852:CDS
ACTCGCCACCCGGTATATAG+GGG 0.659441 6.2:+58423954 MS.gene30852:CDS
ACCCGGTATATAGGGGTGTG+AGG 0.669533 6.2:+58423961 MS.gene30852:CDS
TCAACTTTGCAGACTCCGCG+TGG 0.671197 6.2:+58424129 MS.gene30852:CDS
GTCCGGTCTGAAAGCCTCTG+CGG 0.672100 6.2:-58424210 None:intergenic
CTCCAAAGAAGCGTGCTGGG+AGG 0.687412 6.2:+58423916 MS.gene30852:CDS
ATTCGCAAATGAACTCTCGG+TGG 0.692873 6.2:-58423835 None:intergenic
GAATTTGGAGAAAACTGGTG+TGG 0.699539 6.2:-58423813 None:intergenic
GATGACTAATGACATTGACA+CGG 0.709180 6.2:+58424241 MS.gene30852:CDS
CGAATTCAGAGGGCTCTCAG+GGG 0.717384 6.2:+58423853 MS.gene30852:CDS
AGGTATAGGGAGTCGCCACG+CGG 0.731956 6.2:-58424144 None:intergenic
GGGGATGTCAATTCCCAACG+AGG 0.739386 6.2:+58423872 MS.gene30852:CDS
TCACACCCCTATATACCGGG+TGG 0.772358 6.2:-58423959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
CAAACAAGAAGACTAAGATT+TGG + chr6.2:58424024-58424043 MS.gene30852:CDS 30.0%
GAAGAGGAACTTAGATAAAT+GGG + chr6.2:58423983-58424002 MS.gene30852:CDS 30.0%
GGCAAAAGATATACAAAAAG+CGG + chr6.2:58424178-58424197 MS.gene30852:CDS 30.0%
! CAAATCTTAGTCTTCTTGTT+TGG - chr6.2:58424026-58424045 None:intergenic 30.0%
AAGAAGACTAAGATTTGGCT+AGG + chr6.2:58424029-58424048 MS.gene30852:CDS 35.0%
ACCTCTTCATCTTGAAAATC+TGG - chr6.2:58424434-58424453 None:intergenic 35.0%
AGTTCATTTGCGAATTCAGA+GGG + chr6.2:58423843-58423862 MS.gene30852:CDS 35.0%
ATAAATGGGTGTGTGAAATG+AGG + chr6.2:58423997-58424016 MS.gene30852:CDS 35.0%
GATGACTAATGACATTGACA+CGG + chr6.2:58424241-58424260 MS.gene30852:CDS 35.0%
GGAAGAGGAACTTAGATAAA+TGG + chr6.2:58423982-58424001 MS.gene30852:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG + chr6.2:58423998-58424017 MS.gene30852:CDS 35.0%
TGAATTCGCAAATGAACTCT+CGG - chr6.2:58423841-58423860 None:intergenic 35.0%
! ATGTTGCTTCAATGGCATTA+AGG + chr6.2:58424090-58424109 MS.gene30852:CDS 35.0%
! TGTTGCTTCAATGGCATTAA+GGG + chr6.2:58424091-58424110 MS.gene30852:CDS 35.0%
! TTGTATATCTTTTGCCTGAG+TGG - chr6.2:58424174-58424193 None:intergenic 35.0%
!! AAGATGAAGAGGTATCACTA+TGG + chr6.2:58424441-58424460 MS.gene30852:CDS 35.0%
!! TCCAGATTTTCAAGATGAAG+AGG + chr6.2:58424430-58424449 MS.gene30852:CDS 35.0%
AATGAACTCTCGGTGGAATT+TGG - chr6.2:58423831-58423850 None:intergenic 40.0%
ATGTCTCCTACACATAGCTT+TGG + chr6.2:58424371-58424390 MS.gene30852:CDS 40.0%
GAATTTGGAGAAAACTGGTG+TGG - chr6.2:58423816-58423835 None:intergenic 40.0%
GAGTTCATTTGCGAATTCAG+AGG + chr6.2:58423842-58423861 MS.gene30852:CDS 40.0%
GTTGCTTCAATGGCATTAAG+GGG + chr6.2:58424092-58424111 MS.gene30852:CDS 40.0%
TGATACCCAAAGCTATGTGT+AGG - chr6.2:58424380-58424399 None:intergenic 40.0%
TGTCTCCTACACATAGCTTT+GGG + chr6.2:58424372-58424391 MS.gene30852:CDS 40.0%
! TATATCTTTTGCCTGAGTGG+TGG - chr6.2:58424171-58424190 None:intergenic 40.0%
! TTAGTCATCGAAGTCTTGTC+CGG - chr6.2:58424230-58424249 None:intergenic 40.0%
AAGAGGAAGAGGAAGAAGAG+GGG + chr6.2:58424309-58424328 MS.gene30852:CDS 45.0%
ATTCGCAAATGAACTCTCGG+TGG - chr6.2:58423838-58423857 None:intergenic 45.0%
CGGTGGAATTTGGAGAAAAC+TGG - chr6.2:58423821-58423840 None:intergenic 45.0%
GAAGAGGAAGAGGAAGAAGA+GGG + chr6.2:58424308-58424327 MS.gene30852:CDS 45.0%
GACTTGTATGGAAGAGGAAG+AGG + chr6.2:58424298-58424317 MS.gene30852:CDS 45.0%
GAGTAGGACTTGTATGGAAG+AGG + chr6.2:58424292-58424311 MS.gene30852:CDS 45.0%
GCCAGAGTTGTTGAGGAATA+TGG + chr6.2:58424343-58424362 MS.gene30852:CDS 45.0%
GCCATATTCCTCAACAACTC+TGG - chr6.2:58424347-58424366 None:intergenic 45.0%
TATACAAAAAGCGGCTGCAC+AGG + chr6.2:58424187-58424206 MS.gene30852:CDS 45.0%
TGAACATGCCAGAGTTGTTG+AGG + chr6.2:58424336-58424355 MS.gene30852:CDS 45.0%
TTCCTCACACCCCTATATAC+CGG - chr6.2:58423966-58423985 None:intergenic 45.0%
TTGAAGCAACATCATGTGCC+CGG - chr6.2:58424082-58424101 None:intergenic 45.0%
! GGCACATGATGTTGCTTCAA+TGG + chr6.2:58424082-58424101 MS.gene30852:CDS 45.0%
! TATATAGGGGTGTGAGGAAG+AGG + chr6.2:58423967-58423986 MS.gene30852:CDS 45.0%
AGAGGAAGAGGAAGAAGAGG+GGG + chr6.2:58424310-58424329 MS.gene30852:CDS 50.0%
AGCTAACCTCACTTCCTCGT+TGG - chr6.2:58423889-58423908 None:intergenic 50.0%
CAATTCCCAACGAGGAAGTG+AGG + chr6.2:58423880-58423899 MS.gene30852:CDS 50.0%
GCTAACCTCACTTCCTCGTT+GGG - chr6.2:58423888-58423907 None:intergenic 50.0%
GGAAGAGGAAGAGGAAGAAG+AGG + chr6.2:58424307-58424326 MS.gene30852:CDS 50.0%
GGAGCAGAGTAGGACTTGTA+TGG + chr6.2:58424286-58424305 MS.gene30852:CDS 50.0%
GGAGTCTGCAAAGTTGAGAC+AGG - chr6.2:58424126-58424145 None:intergenic 50.0%
TCCTCACACCCCTATATACC+GGG - chr6.2:58423965-58423984 None:intergenic 50.0%
TGAAGCAACATCATGTGCCC+GGG - chr6.2:58424081-58424100 None:intergenic 50.0%
! CACTTTTCCAACTGCCGAGA+TGG + chr6.2:58424052-58424071 MS.gene30852:CDS 50.0%
ACTCGCCACCCGGTATATAG+GGG + chr6.2:58423954-58423973 MS.gene30852:CDS 55.0%
AGACTCGCCACCCGGTATAT+AGG + chr6.2:58423952-58423971 MS.gene30852:CDS 55.0%
CCTGAGTGGTGGCAGGTATA+GGG - chr6.2:58424160-58424179 None:intergenic 55.0%
CGAATTCAGAGGGCTCTCAG+GGG + chr6.2:58423853-58423872 MS.gene30852:CDS 55.0%
GACTCGCCACCCGGTATATA+GGG + chr6.2:58423953-58423972 MS.gene30852:CDS 55.0%
GCGAATTCAGAGGGCTCTCA+GGG + chr6.2:58423852-58423871 MS.gene30852:CDS 55.0%
GGCTATTGCCACCTCTGCTA+CGG + chr6.2:58424262-58424281 MS.gene30852:CDS 55.0%
GGGGATGTCAATTCCCAACG+AGG + chr6.2:58423872-58423891 MS.gene30852:CDS 55.0%
TATTGCCACCTCTGCTACGG+AGG + chr6.2:58424265-58424284 MS.gene30852:CDS 55.0%
TCAACTTTGCAGACTCCGCG+TGG + chr6.2:58424129-58424148 MS.gene30852:CDS 55.0%
TCACACCCCTATATACCGGG+TGG - chr6.2:58423962-58423981 None:intergenic 55.0%
TGCGAATTCAGAGGGCTCTC+AGG + chr6.2:58423851-58423870 MS.gene30852:CDS 55.0%
TGCTGGGAGGAAGAAGTTCC+AGG + chr6.2:58423929-58423948 MS.gene30852:CDS 55.0%
TTCCTCCCAGCACGCTTCTT+TGG - chr6.2:58423921-58423940 None:intergenic 55.0%
! ACCCGGTATATAGGGGTGTG+AGG + chr6.2:58423961-58423980 MS.gene30852:CDS 55.0%
! ACGACTCCAAAGAAGCGTGC+TGG + chr6.2:58423912-58423931 MS.gene30852:CDS 55.0%
! CGACTCCAAAGAAGCGTGCT+GGG + chr6.2:58423913-58423932 MS.gene30852:CDS 55.0%
! TCTTTTGCCTGAGTGGTGGC+AGG - chr6.2:58424167-58424186 None:intergenic 55.0%
ACTCTGCTCCTCCGTAGCAG+AGG - chr6.2:58424276-58424295 None:intergenic 60.0%
AGGTATAGGGAGTCGCCACG+CGG - chr6.2:58424147-58424166 None:intergenic 60.0%
CCCTATACCTGCCACCACTC+AGG + chr6.2:58424157-58424176 MS.gene30852:CDS 60.0%
CTGCTACGGAGGAGCAGAGT+AGG + chr6.2:58424276-58424295 MS.gene30852:CDS 60.0%
GCCTGAGTGGTGGCAGGTAT+AGG - chr6.2:58424161-58424180 None:intergenic 60.0%
GTCCGGTCTGAAAGCCTCTG+CGG - chr6.2:58424213-58424232 None:intergenic 60.0%
! CTCCAAAGAAGCGTGCTGGG+AGG + chr6.2:58423916-58423935 MS.gene30852:CDS 60.0%
AACTGCCGAGATGGCAGCCC+GGG + chr6.2:58424061-58424080 MS.gene30852:CDS 65.0%
ATACCGGGTGGCGAGTCTCC+TGG - chr6.2:58423950-58423969 None:intergenic 65.0%
ATGTGCCCGGGCTGCCATCT+CGG - chr6.2:58424069-58424088 None:intergenic 65.0%
CAACTGCCGAGATGGCAGCC+CGG + chr6.2:58424060-58424079 MS.gene30852:CDS 65.0%
CTGCTCCTCCGTAGCAGAGG+TGG - chr6.2:58424273-58424292 None:intergenic 65.0%
GGCCGCAGAGGCTTTCAGAC+CGG + chr6.2:58424208-58424227 MS.gene30852:CDS 65.0%
GTTCCAGGAGACTCGCCACC+CGG + chr6.2:58423944-58423963 MS.gene30852:CDS 65.0%
CGGGCTGCCATCTCGGCAGT+TGG - chr6.2:58424062-58424081 None:intergenic 70.0%
AGCGGCTGCACAGGCCGCAG+AGG + chr6.2:58424196-58424215 MS.gene30852:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 58423780 58424472 58423780 ID=MS.gene30852
chr6.2 mRNA 58423780 58424472 58423780 ID=MS.gene30852.t1;Parent=MS.gene30852
chr6.2 exon 58423780 58424472 58423780 ID=MS.gene30852.t1.exon1;Parent=MS.gene30852.t1
chr6.2 CDS 58423780 58424472 58423780 ID=cds.MS.gene30852.t1;Parent=MS.gene30852.t1
Gene Sequence

>MS.gene30852

ATGGATATGTTAACAACTAACAACTCTTCTTATCCACACCAGTTTTCTCCAAATTCCACCGAGAGTTCATTTGCGAATTCAGAGGGCTCTCAGGGGATGTCAATTCCCAACGAGGAAGTGAGGTTAGCTGCGACGACTCCAAAGAAGCGTGCTGGGAGGAAGAAGTTCCAGGAGACTCGCCACCCGGTATATAGGGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCAAACAAGAAGACTAAGATTTGGCTAGGCACTTTTCCAACTGCCGAGATGGCAGCCCGGGCACATGATGTTGCTTCAATGGCATTAAGGGGACGCTACGCCTGTCTCAACTTTGCAGACTCCGCGTGGCGACTCCCTATACCTGCCACCACTCAGGCAAAAGATATACAAAAAGCGGCTGCACAGGCCGCAGAGGCTTTCAGACCGGACAAGACTTCGATGACTAATGACATTGACACGGCTATTGCCACCTCTGCTACGGAGGAGCAGAGTAGGACTTGTATGGAAGAGGAAGAGGAAGAAGAGGGGGCGATGAACATGCCAGAGTTGTTGAGGAATATGGCGCTAATGTCTCCTACACATAGCTTTGGGTATCATGAGTATGAAGATATTCATGTTCAAGACTTTCCAGATTTTCAAGATGAAGAGGTATCACTATGGAATTATTAA

Protein sequence

>MS.gene30852.t1

MDMLTTNNSSYPHQFSPNSTESSFANSEGSQGMSIPNEEVRLAATTPKKRAGRKKFQETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVASMALRGRYACLNFADSAWRLPIPATTQAKDIQKAAAQAAEAFRPDKTSMTNDIDTAIATSATEEQSRTCMEEEEEEEGAMNMPELLRNMALMSPTHSFGYHEYEDIHVQDFPDFQDEEVSLWNY