AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49250.t1 MTR_6g466130 77.619 210 43 2 1 209 24 230 4.32e-104 300
MS.gene49250.t1 MTR_6g466000 69.444 216 50 3 3 207 17 227 7.58e-100 289
MS.gene49250.t1 MTR_6g465690 71.782 202 50 3 2 201 22 218 1.81e-95 279
MS.gene49250.t1 MTR_6g466020 70.732 205 34 3 1 204 1 180 1.89e-91 266
MS.gene49250.t1 MTR_6g465420 70.430 186 49 3 18 201 29 210 1.07e-90 267
MS.gene49250.t1 MTR_6g465450 70.918 196 50 3 9 201 20 211 6.25e-90 264
MS.gene49250.t1 MTR_6g465460 69.022 184 51 1 18 201 29 206 5.52e-89 263
MS.gene49250.t1 MTR_6g465530 72.487 189 51 1 20 207 10 198 2.96e-87 256
MS.gene49250.t1 MTR_6g465430 71.123 187 46 3 18 201 29 210 2.48e-86 255
MS.gene49250.t1 MTR_6g465510 72.362 199 44 2 20 207 10 208 3.54e-84 248
MS.gene49250.t1 MTR_6g465850 59.216 255 46 4 10 209 30 281 1.45e-80 242
MS.gene49250.t1 MTR_6g465990 60.550 218 50 4 1 207 1 193 1.38e-73 221
MS.gene49250.t1 MTR_1g101600 57.711 201 80 1 9 209 7 202 4.14e-73 220
MS.gene49250.t1 MTR_5g010940 46.341 205 99 3 15 209 26 229 7.29e-52 167
MS.gene49250.t1 MTR_5g010930 48.039 204 93 5 18 209 24 226 2.62e-51 165
MS.gene49250.t1 MTR_5g010910 45.960 198 96 3 22 209 28 224 6.39e-50 162
MS.gene49250.t1 MTR_4g102660 49.763 211 84 6 15 209 16 220 7.62e-50 161
MS.gene49250.t1 MTR_3g110205 64.368 87 31 0 38 124 38 124 5.71e-35 122
MS.gene49250.t1 MTR_2g085015 41.451 193 83 9 37 206 41 226 4.05e-32 116
MS.gene49250.t1 MTR_8g006410 66.667 78 26 0 40 117 49 126 5.29e-32 115
MS.gene49250.t1 MTR_2g101340 54.098 122 50 2 23 138 15 136 1.87e-31 114
MS.gene49250.t1 MTR_5g012910 63.291 79 29 0 39 117 24 102 3.10e-31 112
MS.gene49250.t1 MTR_8g102800 58.586 99 41 0 33 131 27 125 1.77e-30 112
MS.gene49250.t1 MTR_7g046260 62.963 81 30 0 37 117 55 135 5.25e-30 111
MS.gene49250.t1 MTR_7g117690 55.682 88 39 0 30 117 15 102 1.11e-29 108
MS.gene49250.t1 MTR_8g027465 50.000 116 54 3 6 117 1 116 2.06e-29 108
MS.gene49250.t1 MTR_4g102670 62.025 79 29 1 39 117 11 88 1.04e-28 105
MS.gene49250.t1 MTR_8g013860 60.759 79 31 0 39 117 43 121 7.29e-28 104
MS.gene49250.t1 MTR_4g100650 62.821 78 29 0 40 117 71 148 1.48e-27 105
MS.gene49250.t1 MTR_6g088405 60.256 78 31 0 40 117 41 118 2.36e-27 103
MS.gene49250.t1 MTR_6g088425 48.361 122 53 1 13 124 9 130 5.53e-24 95.5
MS.gene49250.t1 MTR_1g006660 51.429 105 50 1 13 117 18 121 1.09e-23 95.1
MS.gene49250.t1 MTR_4g035430 46.392 97 47 1 28 124 22 113 1.61e-21 88.6
MS.gene49250.t1 MTR_5g008590 55.435 92 41 0 43 134 11 102 1.11e-20 85.5
MS.gene49250.t1 MTR_1g014780 41.379 116 60 2 42 150 37 151 2.19e-20 85.9
MS.gene49250.t1 MTR_1g014820 36.364 132 74 3 42 165 26 155 1.04e-18 82.0
MS.gene49250.t1 MTR_3g102100 58.929 56 23 0 43 98 45 100 2.30e-18 79.0
MS.gene49250.t1 MTR_1g014860 37.190 121 67 2 38 151 17 135 3.51e-18 79.7
MS.gene49250.t1 MTR_5g008550 41.121 107 61 1 43 147 21 127 7.22e-18 78.2
MS.gene49250.t1 MTR_5g008470 45.238 84 46 0 45 128 77 160 1.45e-17 77.4
MS.gene49250.t1 MTR_1g019110 58.929 56 23 0 43 98 44 99 1.45e-17 77.0
MS.gene49250.t1 MTR_5g016750 57.143 56 24 0 43 98 25 80 3.07e-17 76.3
MS.gene49250.t1 MTR_1g060910 31.795 195 91 8 27 205 3 171 5.02e-17 75.5
MS.gene49250.t1 MTR_7g020980 55.000 60 27 0 39 98 47 106 1.72e-16 74.3
MS.gene49250.t1 MTR_2g435590 49.333 75 35 1 27 101 83 154 2.17e-16 75.5
MS.gene49250.t1 MTR_7g021010 54.688 64 28 1 36 98 4 67 2.74e-16 72.8
MS.gene49250.t1 MTR_5g083340 58.621 58 24 0 43 100 85 142 4.14e-16 76.3
MS.gene49250.t1 MTR_7g021010 53.333 60 28 0 39 98 47 106 5.77e-16 72.8
MS.gene49250.t1 MTR_8g092460 37.736 106 63 1 43 145 145 250 5.95e-16 75.1
MS.gene49250.t1 MTR_1g101550 36.158 177 102 6 43 209 57 232 7.64e-16 73.6
MS.gene49250.t1 MTR_4g086220 58.929 56 23 0 43 98 96 151 1.21e-15 73.2
MS.gene49250.t1 MTR_2g043050 42.353 85 49 0 42 126 18 102 1.36e-15 72.8
MS.gene49250.t1 MTR_1g014800 35.652 115 64 2 42 149 30 141 2.13e-15 72.4
MS.gene49250.t1 MTR_2g078680 44.944 89 42 2 14 98 1 86 3.79e-15 71.2
MS.gene49250.t1 MTR_4g086190 57.143 56 24 0 43 98 96 151 3.82e-15 71.6
MS.gene49250.t1 MTR_4g086160 57.143 56 24 0 43 98 96 151 3.86e-15 71.6
MS.gene49250.t1 MTR_4g086165 57.143 56 24 0 43 98 82 137 4.31e-15 71.2
MS.gene49250.t1 MTR_1g028560 56.140 57 25 0 43 99 115 171 5.48e-15 72.8
MS.gene49250.t1 MTR_2g105380 47.222 72 38 0 31 102 105 176 5.48e-15 72.8
MS.gene49250.t1 MTR_3g105510 41.379 87 47 1 43 125 37 123 7.16e-15 71.2
MS.gene49250.t1 MTR_2g043030 40.000 90 54 0 42 131 18 107 7.43e-15 70.5
MS.gene49250.t1 MTR_8g090350 46.053 76 38 1 42 114 112 187 7.74e-15 71.6
MS.gene49250.t1 MTR_3g074130 48.718 78 37 2 24 100 132 207 7.79e-15 72.4
MS.gene49250.t1 MTR_1g087920 40.816 98 56 1 5 100 37 134 9.25e-15 71.6
MS.gene49250.t1 MTR_5g083330 49.315 73 37 0 28 100 20 92 1.00e-14 71.6
MS.gene49250.t1 MTR_1g090170 52.459 61 29 0 38 98 147 207 1.01e-14 71.6
MS.gene49250.t1 MTR_3g072610 48.315 89 42 2 43 127 25 113 1.54e-14 70.1
MS.gene49250.t1 MTR_5g062700 54.237 59 27 0 42 100 172 230 1.64e-14 71.6
MS.gene49250.t1 MTR_1g090170 50.794 63 31 0 38 100 234 296 1.66e-14 71.6
MS.gene49250.t1 MTR_2g089170 57.143 56 24 0 43 98 65 120 2.31e-14 68.9
MS.gene49250.t1 MTR_4g100450 40.625 96 54 2 4 98 117 210 2.73e-14 70.5
MS.gene49250.t1 MTR_2g015050 50.725 69 33 1 31 98 122 190 3.43e-14 69.7
MS.gene49250.t1 MTR_2g090235 54.237 59 27 0 42 100 217 275 3.87e-14 70.5
MS.gene49250.t1 MTR_8g022820 47.143 70 37 0 33 102 113 182 4.72e-14 70.1
MS.gene49250.t1 MTR_0939s0010 55.357 56 25 0 43 98 65 120 4.80e-14 68.2
MS.gene49250.t1 MTR_8g022820 47.143 70 37 0 33 102 114 183 4.97e-14 70.1
MS.gene49250.t1 MTR_8g022820 47.143 70 37 0 33 102 114 183 4.97e-14 70.1
MS.gene49250.t1 MTR_5g082950 57.143 56 24 0 43 98 66 121 6.62e-14 69.7
MS.gene49250.t1 MTR_2g043040 41.176 85 50 0 42 126 18 102 8.70e-14 68.2
MS.gene49250.t1 MTR_2g014300 55.357 56 25 0 43 98 15 70 1.17e-13 66.6
MS.gene49250.t1 MTR_4g078710 53.571 56 26 0 43 98 28 83 1.53e-13 67.0
MS.gene49250.t1 MTR_3g105480 41.176 85 46 1 45 125 33 117 1.82e-13 67.0
MS.gene49250.t1 MTR_7g092190 55.357 56 25 0 43 98 30 85 1.91e-13 67.8
MS.gene49250.t1 MTR_2g014340 47.887 71 34 1 28 98 7 74 1.95e-13 66.6
MS.gene49250.t1 MTR_3g090760 38.776 98 51 1 16 113 95 183 2.03e-13 68.2
MS.gene49250.t1 MTR_3g053690 53.125 64 27 1 35 98 22 82 2.47e-13 66.6
MS.gene49250.t1 MTR_4g100420 39.583 96 55 2 4 98 120 213 2.90e-13 67.4
MS.gene49250.t1 MTR_1g074310 54.386 57 25 1 43 98 21 77 3.37e-13 64.7
MS.gene49250.t1 MTR_2g438180 54.237 59 26 1 43 100 14 72 3.48e-13 64.3
MS.gene49250.t1 MTR_1g074230 54.386 57 25 1 43 98 19 75 3.81e-13 64.3
MS.gene49250.t1 MTR_1g070070 52.632 57 26 1 43 98 21 77 5.27e-13 64.3
MS.gene49250.t1 MTR_3g106290 57.143 56 24 0 43 98 8 63 5.38e-13 65.1
MS.gene49250.t1 MTR_5g085100 44.186 86 38 2 23 108 29 104 7.22e-13 66.2
MS.gene49250.t1 MTR_5g009620 39.560 91 49 1 14 98 77 167 9.77e-13 66.2
MS.gene49250.t1 MTR_7g028925 50.000 60 27 1 42 101 28 84 1.11e-12 62.0
MS.gene49250.t1 MTR_1g048610 52.632 57 26 1 43 98 89 145 1.67e-12 64.7
MS.gene49250.t1 MTR_2g043020 34.783 115 70 2 42 156 18 127 2.28e-12 63.5
MS.gene49250.t1 MTR_4g008860 57.143 56 24 0 43 98 8 63 2.55e-12 63.5
MS.gene49250.t1 MTR_5g085070 50.794 63 28 1 36 98 47 106 3.80e-12 64.3
MS.gene49250.t1 MTR_1g074250 50.820 61 28 1 40 98 16 76 3.98e-12 61.6
MS.gene49250.t1 MTR_5g008790 40.230 87 47 2 43 124 18 104 4.54e-12 62.0
MS.gene49250.t1 MTR_4g114570 51.786 56 27 0 43 98 7 62 4.73e-12 63.2
MS.gene49250.t1 MTR_4g010640 51.786 56 27 0 43 98 7 62 6.12e-12 62.8
MS.gene49250.t1 MTR_8g099215 37.895 95 53 1 10 98 68 162 7.47e-12 63.5
MS.gene49250.t1 MTR_1g090290 39.175 97 55 3 3 98 76 169 7.53e-12 62.4
MS.gene49250.t1 MTR_4g088005 44.928 69 37 1 31 98 45 113 8.28e-12 60.5
MS.gene49250.t1 MTR_4g054740 46.875 64 33 1 36 98 90 153 9.83e-12 62.4
MS.gene49250.t1 MTR_2g016730 45.588 68 36 1 32 98 11 78 1.14e-11 63.2
MS.gene49250.t1 MTR_4g054360 48.438 64 32 1 36 98 117 180 1.37e-11 62.4
MS.gene49250.t1 MTR_2g103700 45.070 71 32 1 43 113 7 70 1.66e-11 60.8
MS.gene49250.t1 MTR_8g069360 51.786 56 27 0 43 98 44 99 2.52e-11 62.4
MS.gene49250.t1 MTR_8g032610 50.909 55 27 0 45 99 29 83 3.06e-11 61.6
MS.gene49250.t1 MTR_3g098580 56.667 60 24 1 39 98 74 131 5.31e-11 60.8
MS.gene49250.t1 MTR_3g095190 52.055 73 34 1 43 114 170 242 5.48e-11 61.2
MS.gene49250.t1 MTR_4g054860 46.154 65 34 1 35 98 123 187 5.53e-11 60.8
MS.gene49250.t1 MTR_5g075570 43.333 60 34 0 39 98 120 179 5.92e-11 60.8
MS.gene49250.t1 MTR_5g008540 40.000 65 39 0 45 109 26 90 8.38e-11 57.0
MS.gene49250.t1 MTR_6g012970 42.857 77 36 1 22 98 25 93 9.90e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49250.t1 AT4G25470 54.976 211 71 7 8 207 19 216 2.64e-62 193
MS.gene49250.t1 AT5G51990 51.174 213 81 6 10 207 18 222 7.99e-60 187
MS.gene49250.t1 AT4G25480 56.633 196 68 4 21 207 29 216 2.01e-58 183
MS.gene49250.t1 AT4G25490 56.122 196 69 4 21 207 26 213 8.99e-58 181
MS.gene49250.t1 AT1G12610 46.667 210 93 4 14 207 1 207 1.60e-53 171
MS.gene49250.t1 AT1G63030 45.876 194 84 4 18 207 5 181 3.97e-52 166
MS.gene49250.t1 AT1G63030 45.876 194 84 4 18 207 5 181 3.97e-52 166
MS.gene49250.t1 AT5G11590 62.245 98 34 1 27 124 38 132 3.17e-35 124
MS.gene49250.t1 AT5G25810 61.702 94 35 1 32 124 24 117 3.50e-35 124
MS.gene49250.t1 AT2G44940 61.290 93 36 0 32 124 89 181 1.63e-31 116
MS.gene49250.t1 AT4G32800 53.684 95 44 0 30 124 6 100 2.30e-31 114
MS.gene49250.t1 AT4G16750 62.500 80 30 0 38 117 35 114 4.51e-30 109
MS.gene49250.t1 AT2G35700 47.368 133 70 0 38 170 40 172 4.53e-30 110
MS.gene49250.t1 AT3G16280 41.530 183 90 5 39 208 57 235 4.16e-29 108
MS.gene49250.t1 AT3G16280 41.530 183 90 5 39 208 75 253 4.98e-29 109
MS.gene49250.t1 AT2G25820 64.474 76 27 0 42 117 25 100 2.70e-27 103
MS.gene49250.t1 AT1G01250 48.148 108 53 1 13 117 12 119 9.61e-27 101
MS.gene49250.t1 AT3G60490 41.667 168 75 4 37 186 64 226 1.06e-26 103
MS.gene49250.t1 AT2G36450 42.105 190 88 7 31 207 3 183 2.20e-26 100
MS.gene49250.t1 AT5G52020 40.698 172 98 2 39 207 61 231 2.64e-23 93.6
MS.gene49250.t1 AT1G71450 54.878 82 37 0 42 123 23 104 6.55e-23 91.3
MS.gene49250.t1 AT1G77200 46.429 112 59 1 6 117 7 117 6.43e-21 87.4
MS.gene49250.t1 AT1G21910 46.237 93 43 1 43 128 50 142 1.85e-19 83.6
MS.gene49250.t1 AT1G46768 57.143 63 26 1 38 100 27 88 6.52e-19 79.7
MS.gene49250.t1 AT1G46768 57.143 63 26 1 38 100 27 88 7.29e-19 80.1
MS.gene49250.t1 AT1G46768 57.143 63 26 1 38 100 27 88 7.29e-19 80.1
MS.gene49250.t1 AT1G74930 44.186 86 48 0 43 128 21 106 9.14e-19 80.9
MS.gene49250.t1 AT2G47520 42.045 88 47 1 14 101 25 108 1.00e-18 80.1
MS.gene49250.t1 AT4G36900 47.059 85 35 1 14 98 11 85 1.29e-18 80.5
MS.gene49250.t1 AT1G33760 51.111 90 44 0 43 132 20 109 2.09e-18 79.7
MS.gene49250.t1 AT3G50260 52.381 63 30 0 36 98 14 76 2.94e-18 78.6
MS.gene49250.t1 AT5G67190 57.143 56 24 0 43 98 21 76 4.36e-18 78.6
MS.gene49250.t1 AT2G23340 58.929 56 23 0 43 98 28 83 5.54e-18 78.2
MS.gene49250.t1 AT4G06746 40.206 97 45 1 8 104 14 97 2.48e-17 75.9
MS.gene49250.t1 AT1G19210 43.182 88 50 0 43 130 12 99 3.08e-17 76.6
MS.gene49250.t1 AT1G22190 44.318 88 36 1 13 100 66 140 9.06e-17 76.6
MS.gene49250.t1 AT4G13620 48.649 74 36 1 29 100 216 289 1.19e-16 77.8
MS.gene49250.t1 AT3G16770 50.000 78 32 1 23 100 66 136 2.12e-16 75.5
MS.gene49250.t1 AT2G22200 49.333 75 36 1 42 114 70 144 2.45e-16 75.5
MS.gene49250.t1 AT5G21960 45.238 84 46 0 41 124 5 88 2.77e-16 74.7
MS.gene49250.t1 AT2G33710 55.738 61 27 0 38 98 65 125 6.74e-16 73.6
MS.gene49250.t1 AT2G33710 55.738 61 27 0 38 98 65 125 7.33e-16 73.9
MS.gene49250.t1 AT4G39780 54.098 61 28 0 38 98 88 148 7.36e-16 74.3
MS.gene49250.t1 AT5G13330 56.667 60 24 1 39 98 37 94 1.61e-15 72.4
MS.gene49250.t1 AT5G61890 56.667 60 24 1 39 98 88 145 3.11e-15 72.4
MS.gene49250.t1 AT3G15210 35.878 131 74 2 43 173 25 145 3.75e-15 71.6
MS.gene49250.t1 AT1G03800 51.471 68 30 1 31 98 44 108 4.77e-15 71.6
MS.gene49250.t1 AT3G11020 53.846 65 30 0 37 101 72 136 6.06e-15 72.4
MS.gene49250.t1 AT1G12630 56.944 72 30 1 39 110 15 85 8.28e-15 70.1
MS.gene49250.t1 AT1G78080 54.237 59 27 0 42 100 151 209 8.43e-15 72.0
MS.gene49250.t1 AT1G28370 55.357 56 25 0 43 98 20 75 1.20e-14 69.3
MS.gene49250.t1 AT4G31060 42.529 87 45 1 12 98 1 82 1.38e-14 69.3
MS.gene49250.t1 AT1G28370 55.357 56 25 0 43 98 58 113 1.78e-14 69.7
MS.gene49250.t1 AT2G20880 45.000 80 42 1 19 98 165 242 1.80e-14 71.2
MS.gene49250.t1 AT5G05410 55.932 59 26 0 43 101 79 137 1.99e-14 70.9
MS.gene49250.t1 AT5G05410 57.143 56 24 0 43 98 79 134 2.01e-14 71.2
MS.gene49250.t1 AT5G65130 39.286 112 55 3 1 100 60 170 2.14e-14 70.5
MS.gene49250.t1 AT5G44210 55.357 56 25 0 43 98 33 88 2.21e-14 69.3
MS.gene49250.t1 AT5G65130 39.286 112 55 3 1 100 58 168 2.27e-14 70.5
MS.gene49250.t1 AT1G71520 38.000 100 45 3 37 126 8 100 2.44e-14 67.8
MS.gene49250.t1 AT1G72360 43.421 76 43 0 23 98 54 129 4.58e-14 69.3
MS.gene49250.t1 AT1G36060 56.140 57 25 0 42 98 142 198 4.74e-14 69.7
MS.gene49250.t1 AT4G28140 50.847 59 29 0 42 100 142 200 5.02e-14 69.7
MS.gene49250.t1 AT5G47230 42.708 96 51 3 4 98 120 212 9.79e-14 68.9
MS.gene49250.t1 AT1G28360 45.946 74 33 1 43 116 12 78 1.16e-13 67.0
MS.gene49250.t1 AT4G11140 41.975 81 38 2 43 123 87 158 1.68e-13 68.2
MS.gene49250.t1 AT3G57600 55.357 56 25 0 43 98 28 83 1.95e-13 67.8
MS.gene49250.t1 AT1G72360 46.032 63 34 0 36 98 18 80 2.63e-13 66.6
MS.gene49250.t1 AT4G27950 50.877 57 28 0 43 99 118 174 2.63e-13 67.8
MS.gene49250.t1 AT1G22810 39.216 102 47 3 43 136 14 108 2.67e-13 65.1
MS.gene49250.t1 AT5G51190 52.381 63 27 2 37 98 68 128 4.50e-13 65.9
MS.gene49250.t1 AT1G77640 45.556 90 43 1 43 126 43 132 5.02e-13 66.2
MS.gene49250.t1 AT1G72360 46.032 63 34 0 36 98 69 131 8.05e-13 65.9
MS.gene49250.t1 AT5G43410 51.667 60 28 1 40 98 12 71 1.23e-12 62.8
MS.gene49250.t1 AT1G43160 38.017 121 64 2 43 161 61 172 1.33e-12 64.3
MS.gene49250.t1 AT5G64750 45.205 73 39 1 50 122 192 263 1.44e-12 65.9
MS.gene49250.t1 AT5G07580 45.570 79 40 2 37 114 106 182 1.64e-12 64.3
MS.gene49250.t1 AT5G25390 51.786 56 27 0 43 98 7 62 2.66e-12 63.2
MS.gene49250.t1 AT1G75490 50.000 60 30 0 42 101 41 100 2.73e-12 63.5
MS.gene49250.t1 AT3G61630 43.038 79 39 1 43 121 105 177 3.43e-12 64.7
MS.gene49250.t1 AT1G15360 53.571 56 26 0 43 98 7 62 3.69e-12 63.2
MS.gene49250.t1 AT1G15360 53.571 56 26 0 43 98 7 62 3.69e-12 63.2
MS.gene49250.t1 AT3G23230 46.774 62 32 1 43 103 20 81 4.02e-12 61.6
MS.gene49250.t1 AT5G53290 37.647 85 53 0 15 99 97 181 4.19e-12 64.7
MS.gene49250.t1 AT5G25190 55.357 56 25 0 43 98 8 63 6.13e-12 62.4
MS.gene49250.t1 AT5G07310 54.688 64 27 1 39 102 90 151 6.76e-12 63.2
MS.gene49250.t1 AT5G19790 43.590 78 40 2 24 100 5 79 8.06e-12 63.2
MS.gene49250.t1 AT2G44840 52.632 57 26 1 43 98 92 148 8.20e-12 62.8
MS.gene49250.t1 AT4G17490 42.697 89 46 3 13 98 107 193 8.85e-12 63.2
MS.gene49250.t1 AT5G47220 52.632 57 26 1 43 98 117 173 1.87e-11 62.0
MS.gene49250.t1 AT4G23750 47.368 57 30 0 43 99 122 178 2.38e-11 62.4
MS.gene49250.t1 AT4G23750 47.368 57 30 0 43 99 122 178 2.38e-11 62.4
MS.gene49250.t1 AT5G61590 48.276 87 42 2 25 110 91 175 2.44e-11 60.8
MS.gene49250.t1 AT5G18450 52.632 57 27 0 42 98 33 89 2.47e-11 62.0
MS.gene49250.t1 AT2G40340 51.786 56 27 0 43 98 14 69 3.30e-11 61.6
MS.gene49250.t1 AT2G40340 51.786 56 27 0 43 98 14 69 3.30e-11 61.6
MS.gene49250.t1 AT2G40340 51.786 56 27 0 43 98 14 69 3.30e-11 61.6
MS.gene49250.t1 AT5G50080 58.929 56 23 0 43 98 86 141 3.43e-11 60.8
MS.gene49250.t1 AT1G12980 53.571 56 26 0 43 98 57 112 3.79e-11 61.6
MS.gene49250.t1 AT5G50080 58.929 56 23 0 43 98 77 132 3.81e-11 60.8
MS.gene49250.t1 AT3G20310 46.774 62 33 0 37 98 21 82 5.34e-11 60.5
MS.gene49250.t1 AT2G40350 51.786 56 27 0 43 98 74 129 5.39e-11 59.3
MS.gene49250.t1 AT2G40340 51.786 56 27 0 43 98 72 127 5.91e-11 60.8
MS.gene49250.t1 AT2G40340 51.786 56 27 0 43 98 72 127 6.16e-11 61.2
MS.gene49250.t1 AT2G40350 51.786 56 27 0 43 98 67 122 7.53e-11 58.9
MS.gene49250.t1 AT1G12890 42.308 78 42 1 21 98 2 76 7.73e-11 59.7
MS.gene49250.t1 AT2G40340 51.786 56 27 0 43 98 79 134 7.98e-11 60.8

Find 63 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATATGTCATTGCCGAATT+TGG 0.134126 6.4:+37544552 None:intergenic
TTCTCCCTGCACGCTTCTTT+GGG 0.183287 6.4:-37544630 None:intergenic
TTTCTCCCTGCACGCTTCTT+TGG 0.188974 6.4:-37544631 None:intergenic
CGCACATCCTTGGTGGAAAT+TGG 0.234142 6.4:-37544592 None:intergenic
GGAGTAGGAACTTAGGTAAA+TGG 0.262110 6.4:+37544695 MS.gene49250:CDS
GACTCGCCACCCGGTGTATA+GGG 0.268325 6.4:+37544666 MS.gene49250:CDS
TCCAGAGTCGTTGAGGAATA+TGG 0.323237 6.4:+37545065 MS.gene49250:CDS
GGAGCAACTTATGTTTAGTA+TGG 0.332060 6.4:+37544999 MS.gene49250:CDS
AGACTCGCCACCCGGTGTAT+AGG 0.340003 6.4:+37544665 MS.gene49250:CDS
CCATGAGAGACCTCCAAATT+CGG 0.404911 6.4:-37544565 None:intergenic
TGGGCTCGTGCTGCCATCTC+AGG 0.409174 6.4:-37544778 None:intergenic
GCTCCCTATTCCAGTCTCTA+TGG 0.426253 6.4:+37544867 MS.gene49250:CDS
GAGTAGGAACTTAGGTAAAT+GGG 0.429386 6.4:+37544696 MS.gene49250:CDS
CTAGTCAATAAAATCTTGTC+TGG 0.430500 6.4:-37544940 None:intergenic
AAGATATTGAGGTGTCACTA+TGG 0.433062 6.4:+37545148 MS.gene49250:CDS
CCGAATTTGGAGGTCTCTCA+TGG 0.437043 6.4:+37544565 MS.gene49250:CDS
GTCTCCATAGAGACTGGAAT+AGG 0.440038 6.4:-37544871 None:intergenic
CGCAGCTAACCGCACATCCT+TGG 0.450276 6.4:-37544602 None:intergenic
TGCAGACTTTCAAGATATTG+AGG 0.451903 6.4:+37545137 MS.gene49250:CDS
GCCATATTCCTCAACGACTC+TGG 0.459205 6.4:-37545066 None:intergenic
CGTGCTGCCATCTCAGGCGT+TGG 0.464880 6.4:-37544772 None:intergenic
TCAACTTTGCAGACTCTGCC+TGG 0.466308 6.4:+37544842 MS.gene49250:CDS
TCTCCATAGAGACTGGAATA+GGG 0.479432 6.4:-37544870 None:intergenic
TATGTCATTGCCGAATTTGG+AGG 0.491858 6.4:+37544555 None:intergenic
ATGCCAATGTCGCGACATCA+TGG 0.500277 6.4:-37544798 None:intergenic
TGTATAGGGGTGTGAGGAGT+AGG 0.504875 6.4:+37544680 MS.gene49250:CDS
GGCGGCAGCAGAAGCCGCAG+AGG 0.519491 6.4:+37544909 MS.gene49250:CDS
CATGCTCAAAGCTATGTGTA+GGG 0.523141 6.4:-37545098 None:intergenic
AGAGTCTGCAAAGTTGAGAC+AGG 0.526773 6.4:-37544836 None:intergenic
AGTACCCCAAAGAAGCGTGC+AGG 0.528224 6.4:+37544625 MS.gene49250:CDS
GGAGACAAAAGATATACAAA+AGG 0.529482 6.4:+37544888 MS.gene49250:CDS
TCATGCTCAAAGCTATGTGT+AGG 0.531088 6.4:-37545099 None:intergenic
ACTTATGTTTAGTATGGAAG+AGG 0.531676 6.4:+37545005 MS.gene49250:CDS
AAGTTGCTCCTCTGTGGCAT+CGG 0.542436 6.4:-37544986 None:intergenic
GACTGGAATAGGGAGCCGCC+AGG 0.546979 6.4:-37544860 None:intergenic
AGCCCATGATGTCGCGACAT+TGG 0.548120 6.4:+37544795 MS.gene49250:CDS
AACGTTTCCAACGCCTGAGA+TGG 0.548835 6.4:+37544765 MS.gene49250:CDS
TCTCCCTGCACGCTTCTTTG+GGG 0.550146 6.4:-37544629 None:intergenic
GTTCAAGGAGACTCGCCACC+CGG 0.557277 6.4:+37544657 MS.gene49250:CDS
TAAATGGGTGTGTGAAATGA+GGG 0.559080 6.4:+37544711 MS.gene49250:CDS
AGCTTTGAGCATGAATATCA+AGG 0.559097 6.4:+37545108 MS.gene49250:CDS
TGCCAATGTCGCGACATCAT+GGG 0.564925 6.4:-37544797 None:intergenic
TGCAGGGAGAAAGAAGTTCA+AGG 0.565986 6.4:+37544642 MS.gene49250:CDS
GTAAATGGGTGTGTGAAATG+AGG 0.586819 6.4:+37544710 MS.gene49250:CDS
ACTCGCCACCCGGTGTATAG+GGG 0.586878 6.4:+37544667 MS.gene49250:CDS
AGCTAACCGCACATCCTTGG+TGG 0.589838 6.4:-37544599 None:intergenic
GGTGTGAGGAGTAGGAACTT+AGG 0.592784 6.4:+37544688 MS.gene49250:CDS
GTCGCGACATTGGCATTCAG+AGG 0.598542 6.4:+37544805 MS.gene49250:CDS
GTCTGGTTTGAAAGCCTCTG+CGG 0.601416 6.4:-37544923 None:intergenic
GACAAAAGATATACAAAAGG+CGG 0.601517 6.4:+37544891 MS.gene49250:CDS
ACCCGGTGTATAGGGGTGTG+AGG 0.607238 6.4:+37544674 MS.gene49250:CDS
TCCTCACACCCCTATACACC+GGG 0.607770 6.4:-37544675 None:intergenic
TGAACATTCCAGAGTCGTTG+AGG 0.613398 6.4:+37545058 MS.gene49250:CDS
CTCCTCACACCCCTATACAC+CGG 0.618465 6.4:-37544676 None:intergenic
GTACCCCAAAGAAGCGTGCA+GGG 0.625200 6.4:+37544626 MS.gene49250:CDS
CAATTTCCACCAAGGATGTG+CGG 0.634289 6.4:+37544593 MS.gene49250:CDS
TGGAATGCCAATTTCCACCA+AGG 0.655295 6.4:+37544585 MS.gene49250:CDS
AAACATAAGTTGCTCCTCTG+TGG 0.660402 6.4:-37544992 None:intergenic
ATGCTCAAAGCTATGTGTAG+GGG 0.666315 6.4:-37545097 None:intergenic
ATTGACTAGTGATATTGACA+CGG 0.675849 6.4:+37544954 MS.gene49250:CDS
TGTAGCTGCCGATGCCACAG+AGG 0.707467 6.4:+37544978 MS.gene49250:CDS
TCACACCCCTATACACCGGG+TGG 0.714638 6.4:-37544672 None:intergenic
ACTTTGCAGACTCTGCCTGG+CGG 0.759244 6.4:+37544845 MS.gene49250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CTAACAAAAAGACTAAGATA+TGG + chr6.4:37544737-37544756 MS.gene49250:CDS 25.0%
!!! CATATCTTAGTCTTTTTGTT+AGG - chr6.4:37544739-37544758 None:intergenic 25.0%
AAAAAGACTAAGATATGGCT+AGG + chr6.4:37544742-37544761 MS.gene49250:CDS 30.0%
ACTTATGTTTAGTATGGAAG+AGG + chr6.4:37545005-37545024 MS.gene49250:CDS 30.0%
ATTGACTAGTGATATTGACA+CGG + chr6.4:37544954-37544973 MS.gene49250:CDS 30.0%
CTAGTCAATAAAATCTTGTC+TGG - chr6.4:37544943-37544962 None:intergenic 30.0%
GACAAAAGATATACAAAAGG+CGG + chr6.4:37544891-37544910 MS.gene49250:CDS 30.0%
GGAGACAAAAGATATACAAA+AGG + chr6.4:37544888-37544907 MS.gene49250:CDS 30.0%
AGAAGAAGAAGAAAAAGAGG+AGG + chr6.4:37545029-37545048 MS.gene49250:CDS 35.0%
GAGTAGGAACTTAGGTAAAT+GGG + chr6.4:37544696-37544715 MS.gene49250:CDS 35.0%
GGAAGAAGAAGAAGAAAAAG+AGG + chr6.4:37545026-37545045 MS.gene49250:CDS 35.0%
GGAGCAACTTATGTTTAGTA+TGG + chr6.4:37544999-37545018 MS.gene49250:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG + chr6.4:37544711-37544730 MS.gene49250:CDS 35.0%
TGCAGACTTTCAAGATATTG+AGG + chr6.4:37545137-37545156 MS.gene49250:CDS 35.0%
!! AAGATATTGAGGTGTCACTA+TGG + chr6.4:37545148-37545167 MS.gene49250:CDS 35.0%
!! AGCTTTGAGCATGAATATCA+AGG + chr6.4:37545108-37545127 MS.gene49250:CDS 35.0%
AAACATAAGTTGCTCCTCTG+TGG - chr6.4:37544995-37545014 None:intergenic 40.0%
ATGCTCAAAGCTATGTGTAG+GGG - chr6.4:37545100-37545119 None:intergenic 40.0%
CATGCTCAAAGCTATGTGTA+GGG - chr6.4:37545101-37545120 None:intergenic 40.0%
GGAGTAGGAACTTAGGTAAA+TGG + chr6.4:37544695-37544714 MS.gene49250:CDS 40.0%
GTAAATGGGTGTGTGAAATG+AGG + chr6.4:37544710-37544729 MS.gene49250:CDS 40.0%
TCATGCTCAAAGCTATGTGT+AGG - chr6.4:37545102-37545121 None:intergenic 40.0%
TCTCCATAGAGACTGGAATA+GGG - chr6.4:37544873-37544892 None:intergenic 40.0%
! TCTTTTGTCTCCATAGAGAC+TGG - chr6.4:37544880-37544899 None:intergenic 40.0%
AGAGTCTGCAAAGTTGAGAC+AGG - chr6.4:37544839-37544858 None:intergenic 45.0%
CAATTTCCACCAAGGATGTG+CGG + chr6.4:37544593-37544612 MS.gene49250:CDS 45.0%
CCATGAGAGACCTCCAAATT+CGG - chr6.4:37544568-37544587 None:intergenic 45.0%
GTCTCCATAGAGACTGGAAT+AGG - chr6.4:37544874-37544893 None:intergenic 45.0%
TCCAGAGTCGTTGAGGAATA+TGG + chr6.4:37545065-37545084 MS.gene49250:CDS 45.0%
TGAACATTCCAGAGTCGTTG+AGG + chr6.4:37545058-37545077 MS.gene49250:CDS 45.0%
TGCAGGGAGAAAGAAGTTCA+AGG + chr6.4:37544642-37544661 MS.gene49250:CDS 45.0%
TGGAATGCCAATTTCCACCA+AGG + chr6.4:37544585-37544604 MS.gene49250:CDS 45.0%
AACGTTTCCAACGCCTGAGA+TGG + chr6.4:37544765-37544784 MS.gene49250:CDS 50.0%
AAGTTGCTCCTCTGTGGCAT+CGG - chr6.4:37544989-37545008 None:intergenic 50.0%
ATGCCAATGTCGCGACATCA+TGG - chr6.4:37544801-37544820 None:intergenic 50.0%
CCGAATTTGGAGGTCTCTCA+TGG + chr6.4:37544565-37544584 MS.gene49250:CDS 50.0%
CGCACATCCTTGGTGGAAAT+TGG - chr6.4:37544595-37544614 None:intergenic 50.0%
GCCATATTCCTCAACGACTC+TGG - chr6.4:37545069-37545088 None:intergenic 50.0%
GCTCCCTATTCCAGTCTCTA+TGG + chr6.4:37544867-37544886 MS.gene49250:CDS 50.0%
GGTGTGAGGAGTAGGAACTT+AGG + chr6.4:37544688-37544707 MS.gene49250:CDS 50.0%
TCAACTTTGCAGACTCTGCC+TGG + chr6.4:37544842-37544861 MS.gene49250:CDS 50.0%
TGCCAATGTCGCGACATCAT+GGG - chr6.4:37544800-37544819 None:intergenic 50.0%
TTCTCCCTGCACGCTTCTTT+GGG - chr6.4:37544633-37544652 None:intergenic 50.0%
TTTCTCCCTGCACGCTTCTT+TGG - chr6.4:37544634-37544653 None:intergenic 50.0%
! GTCTGGTTTGAAAGCCTCTG+CGG - chr6.4:37544926-37544945 None:intergenic 50.0%
! TGTATAGGGGTGTGAGGAGT+AGG + chr6.4:37544680-37544699 MS.gene49250:CDS 50.0%
ACTTTGCAGACTCTGCCTGG+CGG + chr6.4:37544845-37544864 MS.gene49250:CDS 55.0%
AGCCCATGATGTCGCGACAT+TGG + chr6.4:37544795-37544814 MS.gene49250:CDS 55.0%
AGCTAACCGCACATCCTTGG+TGG - chr6.4:37544602-37544621 None:intergenic 55.0%
CTCCTCACACCCCTATACAC+CGG - chr6.4:37544679-37544698 None:intergenic 55.0%
GTCGCGACATTGGCATTCAG+AGG + chr6.4:37544805-37544824 MS.gene49250:CDS 55.0%
TCCTCACACCCCTATACACC+GGG - chr6.4:37544678-37544697 None:intergenic 55.0%
TCTCCCTGCACGCTTCTTTG+GGG - chr6.4:37544632-37544651 None:intergenic 55.0%
! AGTACCCCAAAGAAGCGTGC+AGG + chr6.4:37544625-37544644 MS.gene49250:CDS 55.0%
! GTACCCCAAAGAAGCGTGCA+GGG + chr6.4:37544626-37544645 MS.gene49250:CDS 55.0%
ACTCGCCACCCGGTGTATAG+GGG + chr6.4:37544667-37544686 MS.gene49250:CDS 60.0%
AGACTCGCCACCCGGTGTAT+AGG + chr6.4:37544665-37544684 MS.gene49250:CDS 60.0%
CGCAGCTAACCGCACATCCT+TGG - chr6.4:37544605-37544624 None:intergenic 60.0%
GACTCGCCACCCGGTGTATA+GGG + chr6.4:37544666-37544685 MS.gene49250:CDS 60.0%
GTTCAAGGAGACTCGCCACC+CGG + chr6.4:37544657-37544676 MS.gene49250:CDS 60.0%
TCACACCCCTATACACCGGG+TGG - chr6.4:37544675-37544694 None:intergenic 60.0%
TGTAGCTGCCGATGCCACAG+AGG + chr6.4:37544978-37544997 MS.gene49250:CDS 60.0%
! ACCCGGTGTATAGGGGTGTG+AGG + chr6.4:37544674-37544693 MS.gene49250:CDS 60.0%
CGTGCTGCCATCTCAGGCGT+TGG - chr6.4:37544775-37544794 None:intergenic 65.0%
GACTGGAATAGGGAGCCGCC+AGG - chr6.4:37544863-37544882 None:intergenic 65.0%
TGGGCTCGTGCTGCCATCTC+AGG - chr6.4:37544781-37544800 None:intergenic 65.0%
GGCGGCAGCAGAAGCCGCAG+AGG + chr6.4:37544909-37544928 MS.gene49250:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 37544556 37545185 37544556 ID=MS.gene49250
chr6.4 mRNA 37544556 37545185 37544556 ID=MS.gene49250.t1;Parent=MS.gene49250
chr6.4 exon 37544556 37545185 37544556 ID=MS.gene49250.t1.exon1;Parent=MS.gene49250.t1
chr6.4 CDS 37544556 37545185 37544556 ID=cds.MS.gene49250.t1;Parent=MS.gene49250.t1
Gene Sequence

>MS.gene49250

ATGTCATTGCCGAATTTGGAGGTCTCTCATGGAATGCCAATTTCCACCAAGGATGTGCGGTTAGCTGCGAGTACCCCAAAGAAGCGTGCAGGGAGAAAGAAGTTCAAGGAGACTCGCCACCCGGTGTATAGGGGTGTGAGGAGTAGGAACTTAGGTAAATGGGTGTGTGAAATGAGGGAGCCTAACAAAAAGACTAAGATATGGCTAGGAACGTTTCCAACGCCTGAGATGGCAGCACGAGCCCATGATGTCGCGACATTGGCATTCAGAGGTTGTTACGCCTGTCTCAACTTTGCAGACTCTGCCTGGCGGCTCCCTATTCCAGTCTCTATGGAGACAAAAGATATACAAAAGGCGGCAGCAGAAGCCGCAGAGGCTTTCAAACCAGACAAGATTTTATTGACTAGTGATATTGACACGGTTGTAGCTGCCGATGCCACAGAGGAGCAACTTATGTTTAGTATGGAAGAGGAAGAAGAAGAAGAAAAAGAGGAGGAAGTGTTGAACATTCCAGAGTCGTTGAGGAATATGGCTCTAATGTCCCCTACACATAGCTTTGAGCATGAATATCAAGGTATTAATGCAGACTTTCAAGATATTGAGGTGTCACTATGGAGTTTTTCAATTTGA

Protein sequence

>MS.gene49250.t1

MSLPNLEVSHGMPISTKDVRLAASTPKKRAGRKKFKETRHPVYRGVRSRNLGKWVCEMREPNKKTKIWLGTFPTPEMAARAHDVATLAFRGCYACLNFADSAWRLPIPVSMETKDIQKAAAEAAEAFKPDKILLTSDIDTVVAADATEEQLMFSMEEEEEEEKEEEVLNIPESLRNMALMSPTHSFEHEYQGINADFQDIEVSLWSFSI