AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86596

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86596.t1 MTR_6g465460 91.866 209 16 1 1 208 1 209 1.58e-127 360
MS.gene86596.t1 MTR_6g465450 84.360 211 30 2 1 208 1 211 1.02e-124 352
MS.gene86596.t1 MTR_6g465420 80.000 210 40 1 1 208 1 210 1.37e-116 333
MS.gene86596.t1 MTR_6g465430 81.905 210 36 2 1 208 1 210 1.57e-114 327
MS.gene86596.t1 MTR_6g465690 68.837 215 57 4 1 206 3 216 2.79e-96 281
MS.gene86596.t1 MTR_6g466000 64.115 209 63 3 17 214 20 227 8.16e-95 276
MS.gene86596.t1 MTR_6g465510 71.569 204 41 2 27 214 6 208 1.60e-92 270
MS.gene86596.t1 MTR_6g465530 70.769 195 48 4 27 214 6 198 6.70e-92 268
MS.gene86596.t1 MTR_6g466130 67.539 191 58 2 27 214 39 228 2.45e-83 247
MS.gene86596.t1 MTR_1g101600 58.947 190 71 3 28 214 15 200 1.11e-66 204
MS.gene86596.t1 MTR_6g465850 48.214 280 78 6 1 214 1 279 3.42e-66 205
MS.gene86596.t1 MTR_6g465990 52.153 209 68 4 17 214 6 193 2.45e-65 200
MS.gene86596.t1 MTR_6g466020 53.571 196 63 5 20 211 9 180 3.31e-57 179
MS.gene86596.t1 MTR_5g010940 43.913 230 108 6 1 214 3 227 8.71e-54 172
MS.gene86596.t1 MTR_5g010930 46.829 205 86 7 29 214 24 224 5.98e-52 167
MS.gene86596.t1 MTR_4g102660 52.294 218 84 9 14 214 4 218 4.34e-51 165
MS.gene86596.t1 MTR_5g010910 43.781 201 94 5 30 214 25 222 6.25e-48 157
MS.gene86596.t1 MTR_8g006410 58.242 91 38 0 38 128 36 126 5.28e-33 118
MS.gene86596.t1 MTR_3g110205 55.446 101 45 0 43 143 32 132 8.82e-33 117
MS.gene86596.t1 MTR_7g046260 56.383 94 41 0 35 128 42 135 6.44e-31 113
MS.gene86596.t1 MTR_7g117690 62.500 80 30 0 49 128 23 102 7.95e-31 111
MS.gene86596.t1 MTR_2g085015 42.690 171 88 4 6 172 5 169 1.01e-30 112
MS.gene86596.t1 MTR_5g012910 62.025 79 30 0 50 128 24 102 4.87e-30 109
MS.gene86596.t1 MTR_8g027465 49.550 111 49 3 22 128 9 116 2.66e-29 107
MS.gene86596.t1 MTR_8g013860 62.025 79 30 0 50 128 43 121 2.80e-28 105
MS.gene86596.t1 MTR_8g102800 50.833 120 56 2 24 142 8 125 5.34e-28 106
MS.gene86596.t1 MTR_2g101340 48.361 122 57 1 34 149 15 136 1.59e-27 103
MS.gene86596.t1 MTR_6g088405 60.256 78 31 0 51 128 41 118 3.30e-27 103
MS.gene86596.t1 MTR_4g100650 61.538 78 30 0 51 128 71 148 2.54e-26 102
MS.gene86596.t1 MTR_4g102670 55.696 79 34 1 50 128 11 88 8.97e-25 95.9
MS.gene86596.t1 MTR_4g035430 52.577 97 41 1 39 135 22 113 1.26e-24 97.1
MS.gene86596.t1 MTR_6g088425 50.000 122 50 2 24 135 10 130 1.87e-23 94.4
MS.gene86596.t1 MTR_1g006660 59.494 79 32 0 50 128 43 121 6.02e-21 88.2
MS.gene86596.t1 MTR_5g008590 35.593 177 96 3 54 213 11 186 9.14e-19 80.9
MS.gene86596.t1 MTR_1g060910 42.623 122 44 3 38 157 3 100 2.43e-18 79.3
MS.gene86596.t1 MTR_5g008550 50.000 86 43 0 54 139 21 106 4.47e-18 79.0
MS.gene86596.t1 MTR_1g014780 41.053 95 49 1 53 140 37 131 1.03e-17 79.0
MS.gene86596.t1 MTR_5g008470 44.048 84 47 0 56 139 77 160 3.62e-17 76.3
MS.gene86596.t1 MTR_1g014820 42.391 92 49 1 53 140 26 117 6.47e-17 77.4
MS.gene86596.t1 MTR_2g435590 53.030 66 31 0 47 112 89 154 6.67e-17 77.0
MS.gene86596.t1 MTR_3g105510 50.000 70 35 0 54 123 37 106 1.31e-16 76.3
MS.gene86596.t1 MTR_3g074130 51.351 74 34 1 38 111 136 207 1.61e-16 77.0
MS.gene86596.t1 MTR_5g083340 62.069 58 22 0 54 111 85 142 1.69e-16 77.4
MS.gene86596.t1 MTR_1g014860 38.384 99 54 1 49 140 17 115 2.19e-16 75.1
MS.gene86596.t1 MTR_3g102100 56.897 58 25 0 54 111 45 102 3.37e-16 73.6
MS.gene86596.t1 MTR_1g090170 53.968 63 29 0 49 111 147 209 4.46e-16 75.5
MS.gene86596.t1 MTR_7g021010 42.697 89 50 1 45 132 2 90 6.23e-16 72.0
MS.gene86596.t1 MTR_1g090170 53.968 63 29 0 49 111 234 296 7.74e-16 75.5
MS.gene86596.t1 MTR_5g062700 57.627 59 25 0 53 111 172 230 8.18e-16 75.5
MS.gene86596.t1 MTR_2g043050 43.529 85 48 0 53 137 18 102 8.42e-16 73.6
MS.gene86596.t1 MTR_2g105380 38.776 98 57 1 12 109 78 172 1.00e-15 75.1
MS.gene86596.t1 MTR_8g090350 57.895 57 24 0 53 109 112 168 1.19e-15 73.9
MS.gene86596.t1 MTR_2g090235 57.627 59 25 0 53 111 217 275 1.31e-15 75.1
MS.gene86596.t1 MTR_7g020980 50.000 64 32 0 50 113 47 110 1.43e-15 72.0
MS.gene86596.t1 MTR_1g087920 37.273 110 57 2 4 111 35 134 1.52e-15 73.9
MS.gene86596.t1 MTR_1g014800 41.111 90 46 1 53 135 30 119 1.80e-15 72.4
MS.gene86596.t1 MTR_1g019110 51.613 62 30 0 54 115 44 105 2.22e-15 71.6
MS.gene86596.t1 MTR_1g028560 43.902 82 41 1 54 135 115 191 2.37e-15 73.9
MS.gene86596.t1 MTR_7g021010 42.697 89 50 1 45 132 41 129 2.61e-15 71.2
MS.gene86596.t1 MTR_3g105480 50.000 68 34 0 56 123 33 100 3.52e-15 72.0
MS.gene86596.t1 MTR_2g043030 29.747 158 97 3 53 196 18 175 3.86e-15 71.2
MS.gene86596.t1 MTR_8g092460 53.333 60 28 0 54 113 145 204 5.55e-15 72.4
MS.gene86596.t1 MTR_5g083330 50.685 73 36 0 39 111 20 92 7.43e-15 72.0
MS.gene86596.t1 MTR_1g101550 38.418 177 90 7 54 214 57 230 7.54e-15 71.2
MS.gene86596.t1 MTR_2g089170 60.714 56 22 0 54 109 65 120 8.49e-15 70.1
MS.gene86596.t1 MTR_4g086220 58.929 56 23 0 54 109 96 151 8.86e-15 70.9
MS.gene86596.t1 MTR_3g053690 55.385 65 26 1 45 109 21 82 1.35e-14 70.5
MS.gene86596.t1 MTR_7g028925 53.333 60 25 1 53 112 28 84 1.64e-14 67.0
MS.gene86596.t1 MTR_5g016750 55.357 56 25 0 54 109 25 80 2.07e-14 68.9
MS.gene86596.t1 MTR_4g086160 57.143 56 24 0 54 109 96 151 2.30e-14 69.7
MS.gene86596.t1 MTR_4g086190 57.143 56 24 0 54 109 96 151 2.67e-14 69.7
MS.gene86596.t1 MTR_0939s0010 58.929 56 23 0 54 109 65 120 2.79e-14 68.9
MS.gene86596.t1 MTR_2g078680 48.684 76 36 1 34 109 14 86 2.89e-14 68.9
MS.gene86596.t1 MTR_8g022820 41.772 79 43 1 47 125 116 191 3.28e-14 70.9
MS.gene86596.t1 MTR_4g086165 57.143 56 24 0 54 109 82 137 3.38e-14 68.9
MS.gene86596.t1 MTR_8g022820 41.772 79 43 1 47 125 117 192 3.45e-14 70.9
MS.gene86596.t1 MTR_8g022820 41.772 79 43 1 47 125 117 192 3.45e-14 70.9
MS.gene86596.t1 MTR_5g082950 58.929 56 23 0 54 109 66 121 4.35e-14 70.1
MS.gene86596.t1 MTR_4g114570 50.725 69 27 1 54 122 7 68 4.55e-14 68.6
MS.gene86596.t1 MTR_4g010640 55.357 56 25 0 54 109 7 62 9.23e-14 67.8
MS.gene86596.t1 MTR_7g092190 57.143 56 24 0 54 109 30 85 1.08e-13 68.6
MS.gene86596.t1 MTR_3g106290 58.929 56 23 0 54 109 8 63 1.18e-13 67.0
MS.gene86596.t1 MTR_1g074310 51.613 62 29 1 54 114 21 82 1.27e-13 65.9
MS.gene86596.t1 MTR_2g103700 51.667 60 29 0 54 113 7 66 1.35e-13 66.6
MS.gene86596.t1 MTR_4g078710 36.190 105 57 2 54 156 28 124 1.42e-13 67.4
MS.gene86596.t1 MTR_4g008860 58.929 56 23 0 54 109 8 63 1.63e-13 66.6
MS.gene86596.t1 MTR_3g090760 31.892 185 106 5 28 207 96 265 1.86e-13 68.6
MS.gene86596.t1 MTR_1g048610 56.140 57 24 1 54 109 89 145 2.12e-13 67.0
MS.gene86596.t1 MTR_2g438180 53.226 62 28 1 54 114 14 75 2.27e-13 65.1
MS.gene86596.t1 MTR_5g009620 49.333 75 28 2 41 109 97 167 3.07e-13 67.8
MS.gene86596.t1 MTR_1g070070 54.386 57 25 1 54 109 21 77 5.61e-13 64.3
MS.gene86596.t1 MTR_4g100450 42.353 85 48 1 30 113 130 214 5.66e-13 67.0
MS.gene86596.t1 MTR_2g015050 54.386 57 25 1 54 109 134 190 5.66e-13 66.6
MS.gene86596.t1 MTR_8g099215 45.000 80 38 1 36 109 83 162 6.41e-13 66.6
MS.gene86596.t1 MTR_2g014340 53.571 56 26 0 54 109 19 74 7.29e-13 65.1
MS.gene86596.t1 MTR_2g043040 40.000 85 51 0 53 137 18 102 7.52e-13 65.5
MS.gene86596.t1 MTR_4g100420 52.239 67 29 2 48 113 153 217 1.07e-12 66.2
MS.gene86596.t1 MTR_1g074230 56.140 57 24 1 54 109 19 75 1.89e-12 62.8
MS.gene86596.t1 MTR_5g085100 40.816 98 47 3 23 119 17 104 3.12e-12 64.7
MS.gene86596.t1 MTR_2g014300 55.357 56 25 0 54 109 15 70 3.13e-12 62.8
MS.gene86596.t1 MTR_4g054360 48.529 68 34 1 47 113 117 184 3.30e-12 64.3
MS.gene86596.t1 MTR_4g054740 34.043 141 78 4 4 140 49 178 4.63e-12 63.5
MS.gene86596.t1 MTR_8g069360 51.786 56 27 0 54 109 44 99 4.80e-12 64.7
MS.gene86596.t1 MTR_2g019750 33.871 124 73 2 39 162 37 151 5.97e-12 63.9
MS.gene86596.t1 MTR_1g090290 51.613 62 27 2 49 109 110 169 6.74e-12 62.4
MS.gene86596.t1 MTR_3g072610 42.342 111 53 3 39 138 3 113 7.28e-12 62.8
MS.gene86596.t1 MTR_2g043020 50.877 57 28 0 53 109 18 74 9.47e-12 62.0
MS.gene86596.t1 MTR_5g008540 47.541 61 32 0 56 116 26 86 1.08e-11 59.7
MS.gene86596.t1 MTR_2g016730 50.847 59 29 0 51 109 20 78 1.09e-11 63.2
MS.gene86596.t1 MTR_7g085810 44.595 74 40 1 54 127 30 102 1.38e-11 62.4
MS.gene86596.t1 MTR_4g088005 48.438 64 32 1 47 109 50 113 1.39e-11 60.1
MS.gene86596.t1 MTR_5g032820 53.571 56 26 0 54 109 46 101 1.58e-11 63.2
MS.gene86596.t1 MTR_6g041970 39.535 86 39 1 54 139 18 90 1.60e-11 59.3
MS.gene86596.t1 MTR_4g111915 45.763 59 32 0 54 112 53 111 2.22e-11 59.7
MS.gene86596.t1 MTR_5g008790 39.080 87 48 2 54 135 18 104 2.90e-11 60.1
MS.gene86596.t1 MTR_5g085070 47.945 73 28 2 47 119 47 109 3.34e-11 61.6
MS.gene86596.t1 MTR_1g074250 46.875 64 32 1 51 112 16 79 3.62e-11 58.9
MS.gene86596.t1 MTR_4g054860 43.662 71 39 1 46 115 123 193 4.94e-11 61.2
MS.gene86596.t1 MTR_5g075570 46.667 60 32 0 50 109 120 179 5.45e-11 60.8
MS.gene86596.t1 MTR_4g119270 44.444 72 37 1 38 109 40 108 6.82e-11 61.2
MS.gene86596.t1 MTR_4g112490 45.763 59 32 0 54 112 53 111 7.44e-11 59.7
MS.gene86596.t1 MTR_8g032610 48.333 60 31 0 54 113 27 86 7.55e-11 60.8
MS.gene86596.t1 MTR_8g006840 50.877 57 27 1 54 109 125 181 8.11e-11 59.7
MS.gene86596.t1 MTR_3g095190 52.055 73 34 1 54 125 170 242 8.82e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86596.t1 AT4G25470 52.752 218 87 6 7 214 5 216 1.64e-64 199
MS.gene86596.t1 AT4G25480 53.456 217 87 6 7 214 5 216 1.34e-60 189
MS.gene86596.t1 AT5G51990 44.737 228 83 5 21 214 4 222 2.10e-57 181
MS.gene86596.t1 AT1G63030 47.619 189 88 3 27 214 3 181 5.39e-56 176
MS.gene86596.t1 AT1G63030 47.619 189 88 3 27 214 3 181 5.39e-56 176
MS.gene86596.t1 AT1G12610 58.571 140 52 1 27 166 3 136 9.66e-56 176
MS.gene86596.t1 AT4G25490 55.670 194 69 6 32 214 26 213 1.31e-55 176
MS.gene86596.t1 AT5G25810 51.220 123 53 1 13 135 2 117 1.29e-33 120
MS.gene86596.t1 AT5G11590 52.174 115 51 1 25 135 18 132 2.18e-31 115
MS.gene86596.t1 AT2G44940 60.215 93 37 0 43 135 89 181 3.21e-31 115
MS.gene86596.t1 AT4G32800 57.143 98 36 1 50 141 15 112 3.88e-31 114
MS.gene86596.t1 AT3G16280 63.291 79 29 0 50 128 57 135 9.12e-29 108
MS.gene86596.t1 AT3G16280 63.291 79 29 0 50 128 75 153 1.27e-28 108
MS.gene86596.t1 AT1G01250 60.000 80 32 0 49 128 40 119 1.72e-28 106
MS.gene86596.t1 AT2G35700 60.000 80 32 0 49 128 40 119 3.16e-28 105
MS.gene86596.t1 AT4G16750 56.790 81 35 0 49 129 35 115 5.10e-27 102
MS.gene86596.t1 AT3G60490 53.846 91 41 1 39 128 55 145 6.45e-26 101
MS.gene86596.t1 AT2G36450 40.113 177 90 6 50 214 11 183 2.83e-25 97.8
MS.gene86596.t1 AT2G25820 60.526 76 30 0 53 128 25 100 7.64e-25 97.8
MS.gene86596.t1 AT1G71450 57.317 82 35 0 53 134 23 104 3.44e-23 92.4
MS.gene86596.t1 AT5G52020 38.506 174 95 4 50 214 61 231 1.44e-22 92.0
MS.gene86596.t1 AT2G47520 44.898 98 50 1 15 112 15 108 1.28e-20 85.1
MS.gene86596.t1 AT1G33760 55.172 87 39 0 54 140 20 106 2.30e-19 82.4
MS.gene86596.t1 AT4G13620 51.282 78 37 1 35 111 212 289 5.73e-19 84.3
MS.gene86596.t1 AT1G77200 58.442 77 32 0 52 128 41 117 1.27e-18 81.6
MS.gene86596.t1 AT5G21960 38.211 123 68 1 52 166 5 127 8.26e-18 79.0
MS.gene86596.t1 AT1G22190 53.425 73 32 1 39 111 70 140 8.97e-18 79.7
MS.gene86596.t1 AT1G19210 31.492 181 97 5 54 214 12 185 9.56e-18 78.2
MS.gene86596.t1 AT1G21910 46.739 92 42 1 54 138 50 141 1.32e-17 78.6
MS.gene86596.t1 AT1G46768 57.143 63 26 1 49 111 27 88 1.47e-17 76.3
MS.gene86596.t1 AT1G46768 57.143 63 26 1 49 111 27 88 1.50e-17 76.6
MS.gene86596.t1 AT1G46768 57.143 63 26 1 49 111 27 88 1.50e-17 76.6
MS.gene86596.t1 AT4G39780 35.246 122 65 3 49 169 88 196 2.15e-17 79.0
MS.gene86596.t1 AT2G22200 47.561 82 43 0 53 134 70 151 4.64e-17 77.8
MS.gene86596.t1 AT3G16770 51.282 78 31 1 34 111 66 136 4.82e-17 77.4
MS.gene86596.t1 AT1G12630 60.811 74 28 1 50 123 15 87 5.26e-17 76.3
MS.gene86596.t1 AT4G06746 53.226 62 29 0 54 115 36 97 8.97e-17 74.7
MS.gene86596.t1 AT1G74930 41.860 86 50 0 54 139 21 106 9.86e-17 75.5
MS.gene86596.t1 AT3G11020 58.730 63 26 0 51 113 75 137 1.03e-16 77.8
MS.gene86596.t1 AT4G28140 33.553 152 76 5 36 181 120 252 3.33e-16 75.9
MS.gene86596.t1 AT1G78080 57.627 59 25 0 53 111 151 209 5.02e-16 75.9
MS.gene86596.t1 AT5G65130 45.455 99 40 3 28 113 73 170 6.19e-16 74.7
MS.gene86596.t1 AT5G65130 45.455 99 40 3 28 113 75 172 6.66e-16 74.7
MS.gene86596.t1 AT2G20880 46.341 82 42 1 30 111 165 244 9.39e-16 75.1
MS.gene86596.t1 AT2G33710 48.101 79 36 1 49 122 65 143 1.04e-15 73.2
MS.gene86596.t1 AT2G33710 48.101 79 36 1 49 122 65 143 1.38e-15 73.2
MS.gene86596.t1 AT3G50260 41.935 93 45 2 47 135 14 101 1.81e-15 71.2
MS.gene86596.t1 AT5G05410 59.322 59 24 0 54 112 79 137 2.29e-15 73.6
MS.gene86596.t1 AT1G22810 34.426 122 52 3 54 167 14 115 2.40e-15 70.5
MS.gene86596.t1 AT1G36060 59.649 57 23 0 53 109 142 198 2.53e-15 73.6
MS.gene86596.t1 AT1G71520 43.750 96 45 3 48 137 8 100 2.60e-15 70.5
MS.gene86596.t1 AT5G05410 59.322 59 24 0 54 112 79 137 3.35e-15 73.6
MS.gene86596.t1 AT4G36900 53.333 60 28 0 50 109 26 85 3.60e-15 71.2
MS.gene86596.t1 AT2G23340 49.231 65 33 0 54 118 28 92 7.77e-15 70.1
MS.gene86596.t1 AT5G67190 51.724 58 28 0 54 111 21 78 8.79e-15 70.1
MS.gene86596.t1 AT5G47230 47.059 85 43 2 30 113 133 216 1.09e-14 71.6
MS.gene86596.t1 AT4G31060 36.508 126 74 4 54 174 27 151 1.13e-14 69.7
MS.gene86596.t1 AT5G13330 51.562 64 29 1 50 113 37 98 1.77e-14 69.7
MS.gene86596.t1 AT5G07580 49.367 79 37 2 48 125 106 182 2.54e-14 69.3
MS.gene86596.t1 AT5G61890 51.562 64 29 1 50 113 88 149 2.59e-14 70.1
MS.gene86596.t1 AT1G15360 57.143 56 24 0 54 109 7 62 3.05e-14 68.9
MS.gene86596.t1 AT1G15360 57.143 56 24 0 54 109 7 62 3.05e-14 68.9
MS.gene86596.t1 AT5G44210 48.571 70 29 1 54 123 33 95 3.54e-14 68.9
MS.gene86596.t1 AT3G15210 55.556 63 25 1 47 109 21 80 4.96e-14 68.9
MS.gene86596.t1 AT1G75490 50.000 70 35 0 53 122 41 110 5.71e-14 68.2
MS.gene86596.t1 AT5G61600 59.016 61 22 2 50 109 86 144 6.05e-14 68.9
MS.gene86596.t1 AT4G17490 47.126 87 41 3 30 113 113 197 7.67e-14 68.9
MS.gene86596.t1 AT4G11140 45.205 73 34 1 54 126 87 153 8.51e-14 68.9
MS.gene86596.t1 AT3G57600 55.357 56 25 0 54 109 28 83 1.02e-13 68.6
MS.gene86596.t1 AT4G27950 54.386 57 26 0 54 110 118 174 1.27e-13 68.9
MS.gene86596.t1 AT1G72360 34.711 121 68 2 22 142 42 151 1.27e-13 68.2
MS.gene86596.t1 AT1G72360 38.542 96 48 2 47 142 18 102 1.58e-13 67.4
MS.gene86596.t1 AT3G61630 46.667 75 34 1 54 128 105 173 1.60e-13 68.6
MS.gene86596.t1 AT5G51190 55.556 63 25 2 48 109 68 128 1.79e-13 67.4
MS.gene86596.t1 AT5G25390 53.571 56 26 0 54 109 7 62 2.01e-13 66.6
MS.gene86596.t1 AT5G43410 47.887 71 34 2 40 109 3 71 3.27e-13 64.7
MS.gene86596.t1 AT1G72360 38.542 96 48 2 47 142 69 153 4.01e-13 67.0
MS.gene86596.t1 AT5G53290 43.836 73 41 0 38 110 109 181 6.12e-13 67.0
MS.gene86596.t1 AT5G25190 57.143 56 24 0 54 109 8 63 6.69e-13 65.1
MS.gene86596.t1 AT3G23230 50.000 62 30 1 54 114 20 81 8.67e-13 63.5
MS.gene86596.t1 AT1G12890 44.872 78 40 1 32 109 2 76 1.04e-12 65.1
MS.gene86596.t1 AT5G18450 56.140 57 25 0 53 109 33 89 1.32e-12 65.9
MS.gene86596.t1 AT3G20310 52.459 61 29 0 49 109 22 82 2.33e-12 64.3
MS.gene86596.t1 AT2G40340 53.571 56 26 0 54 109 14 69 2.59e-12 64.7
MS.gene86596.t1 AT2G40340 53.571 56 26 0 54 109 14 69 2.59e-12 64.7
MS.gene86596.t1 AT2G40340 53.571 56 26 0 54 109 14 69 2.59e-12 64.7
MS.gene86596.t1 AT1G03800 47.059 68 33 1 42 109 44 108 2.74e-12 64.3
MS.gene86596.t1 AT2G40340 53.571 56 26 0 54 109 72 127 4.51e-12 64.3
MS.gene86596.t1 AT2G40340 53.571 56 26 0 54 109 72 127 5.31e-12 64.3
MS.gene86596.t1 AT2G40340 53.571 56 26 0 54 109 79 134 5.61e-12 64.3
MS.gene86596.t1 AT1G28360 51.667 60 29 0 54 113 12 71 6.24e-12 62.4
MS.gene86596.t1 AT2G46310 50.000 56 28 0 54 109 99 154 7.50e-12 63.5
MS.gene86596.t1 AT1G28370 51.786 56 27 0 54 109 20 75 7.53e-12 61.6
MS.gene86596.t1 AT5G19790 51.724 58 28 0 54 111 22 79 8.76e-12 63.2
MS.gene86596.t1 AT1G28370 51.786 56 27 0 54 109 58 113 9.96e-12 62.0
MS.gene86596.t1 AT5G47220 52.632 57 26 1 54 109 117 173 1.89e-11 62.0
MS.gene86596.t1 AT4G23750 49.123 57 29 0 54 110 122 178 2.05e-11 62.8
MS.gene86596.t1 AT4G23750 49.123 57 29 0 54 110 122 178 2.05e-11 62.8
MS.gene86596.t1 AT5G64750 42.857 70 39 1 64 133 195 263 2.44e-11 62.4
MS.gene86596.t1 AT1G24590 47.143 70 32 1 54 123 58 122 2.75e-11 62.0
MS.gene86596.t1 AT1G50640 52.381 63 27 1 47 109 24 83 2.88e-11 61.2
MS.gene86596.t1 AT1G77640 45.556 90 43 1 54 137 43 132 3.01e-11 61.2
MS.gene86596.t1 AT1G12980 53.571 56 26 0 54 109 57 112 3.51e-11 62.0
MS.gene86596.t1 AT5G13910 44.595 74 37 1 54 127 20 89 3.69e-11 60.8
MS.gene86596.t1 AT5G18560 45.070 71 38 1 39 109 41 110 5.50e-11 61.2
MS.gene86596.t1 AT1G43160 56.667 60 26 0 54 113 61 120 9.56e-11 59.3

Find 62 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTCCCTGCTCTCTTCTT+CGG 0.270452 6.1:-51099477 None:intergenic
TCCTCCCTGCTCTCTTCTTC+GGG 0.299122 6.1:-51099476 None:intergenic
GTGGGCTCGGGCTGCCATAT+CGG 0.341546 6.1:-51099625 None:intergenic
TCGCAGCAACATCGTGGGCT+CGG 0.360833 6.1:-51099638 None:intergenic
TTCCTACTATAACTCATTAC+CGG 0.377606 6.1:+51099425 MS.gene86596:CDS
GTCTGAGTTGTGGAGGAATA+TGG 0.404875 6.1:+51099893 MS.gene86596:CDS
AAAGATATTCAGCTCCTTTG+TGG 0.404977 6.1:-51099838 None:intergenic
AGAAGATGCTTCTGAGGAAA+TGG 0.410583 6.1:-51099403 None:intergenic
CAAATCCTAGTCTTTGTGTT+GGG 0.412460 6.1:-51099582 None:intergenic
ATCGAGGAAGTTGCTGGAAT+AGG 0.421748 6.1:-51099717 None:intergenic
GGAAGAGGAACTTAGACAAA+TGG 0.425545 6.1:+51099541 MS.gene86596:CDS
TATCGGTAATCATTATAGTA+TGG 0.428882 6.1:-51099791 None:intergenic
CTATAACTCATTACCGGATT+CGG 0.428938 6.1:+51099431 MS.gene86596:CDS
CATTTGAAAAGCTATGCGTT+GGG 0.439248 6.1:-51099926 None:intergenic
CGCAGCAACATCGTGGGCTC+GGG 0.441327 6.1:-51099637 None:intergenic
TGAGGAAATGGAGTGTGAAT+AGG 0.454822 6.1:-51099391 None:intergenic
CCAACACAAAGACTAGGATT+TGG 0.458340 6.1:+51099583 MS.gene86596:CDS
CGGGCTGCCATATCGGCTGT+TGG 0.466848 6.1:-51099618 None:intergenic
AGCTACAACAGTCTCAATAT+CGG 0.484335 6.1:-51099808 None:intergenic
ACTCGCCACCCGGTGTATAG+AGG 0.498536 6.1:+51099513 MS.gene86596:CDS
AGTAACCCGAAGAAGAGAGC+AGG 0.499062 6.1:+51099471 MS.gene86596:CDS
ATGGTCTGGTCTAAAAGCTT+CGG 0.507769 6.1:-51099772 None:intergenic
CTCGATAAAAGATATTCAAA+AGG 0.509288 6.1:+51099734 MS.gene86596:CDS
AAGATGATGAGGTATCACTA+TGG 0.509514 6.1:+51099982 MS.gene86596:CDS
TCATTTGAAAAGCTATGCGT+TGG 0.510227 6.1:-51099927 None:intergenic
GTAATCATTATAGTATGGTC+TGG 0.512732 6.1:-51099786 None:intergenic
CTGTCTTAATTTCGCAGACT+CGG 0.517770 6.1:+51099683 MS.gene86596:CDS
AGCCCACGATGTTGCTGCGA+TGG 0.517952 6.1:+51099641 MS.gene86596:CDS
TGTTGCTGCGATGGCATTGA+GGG 0.520108 6.1:+51099650 MS.gene86596:CDS
GAAGAGGAACTTAGACAAAT+GGG 0.523345 6.1:+51099542 MS.gene86596:CDS
CCAAATCCTAGTCTTTGTGT+TGG 0.525041 6.1:-51099583 None:intergenic
AGCTATGCGTTGGGGACATG+AGG 0.531353 6.1:-51099917 None:intergenic
TGTATAGAGGTGTTAGGAAG+AGG 0.541975 6.1:+51099526 MS.gene86596:CDS
ACCCGGTGTATAGAGGTGTT+AGG 0.542359 6.1:+51099520 MS.gene86596:CDS
GCTAATCGTATCTCCGAATC+CGG 0.544056 6.1:-51099444 None:intergenic
ATCCGGTAATGAGTTATAGT+AGG 0.553057 6.1:-51099427 None:intergenic
GTCTGGTCTAAAAGCTTCGG+CGG 0.563548 6.1:-51099769 None:intergenic
AGCAGGGAGGAAGATATTCA+AGG 0.572499 6.1:+51099488 MS.gene86596:CDS
CAAATGGGTGTGTGAAATGA+GGG 0.573881 6.1:+51099557 MS.gene86596:CDS
GTAACCCGAAGAAGAGAGCA+GGG 0.574199 6.1:+51099472 MS.gene86596:CDS
ACAAATGGGTGTGTGAAATG+AGG 0.584388 6.1:+51099556 MS.gene86596:CDS
TCCTAACACCTCTATACACC+GGG 0.586398 6.1:-51099521 None:intergenic
GTAGGAAGAAGATGCTTCTG+AGG 0.589860 6.1:-51099409 None:intergenic
ATGTTGCTGCGATGGCATTG+AGG 0.600000 6.1:+51099649 MS.gene86596:CDS
TTCCTAACACCTCTATACAC+CGG 0.602821 6.1:-51099522 None:intergenic
CGAGTCTGCGAAATTAAGAC+AGG 0.602923 6.1:-51099682 None:intergenic
ACAAAGACTAGGATTTGGCT+AGG 0.603777 6.1:+51099588 MS.gene86596:CDS
ATTCAAGGAAACTCGCCACC+CGG 0.604485 6.1:+51099503 MS.gene86596:CDS
TGTTAGATATGTCTGAGTTG+TGG 0.614330 6.1:+51099883 MS.gene86596:CDS
GCTATGCGTTGGGGACATGA+GGG 0.616909 6.1:-51099916 None:intergenic
TGCCATCGCAGCAACATCGT+GGG 0.618095 6.1:-51099643 None:intergenic
ATTTGAAAAGCTATGCGTTG+GGG 0.619966 6.1:-51099925 None:intergenic
TTAATTTCGCAGACTCGGTG+TGG 0.622245 6.1:+51099688 MS.gene86596:CDS
GGGAGCCCAACACAAAGACT+AGG 0.634407 6.1:+51099577 MS.gene86596:CDS
ATGCCATCGCAGCAACATCG+TGG 0.653893 6.1:-51099644 None:intergenic
ATTTCGCAGACTCGGTGTGG+CGG 0.653918 6.1:+51099691 MS.gene86596:CDS
TGTAGCTGTCGTCGCCACAA+AGG 0.664697 6.1:+51099824 MS.gene86596:CDS
TAGATATGTCTGAGTTGTGG+AGG 0.678753 6.1:+51099886 MS.gene86596:CDS
GGATTCGGAGATACGATTAG+CGG 0.695782 6.1:+51099446 MS.gene86596:CDS
GTTGCTGCGATGGCATTGAG+GGG 0.700087 6.1:+51099651 MS.gene86596:CDS
ACCCGAAGAAGAGAGCAGGG+AGG 0.701611 6.1:+51099475 MS.gene86596:CDS
TAACACCTCTATACACCGGG+TGG 0.755465 6.1:-51099518 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CTCGATAAAAGATATTCAAA+AGG + chr6.1:51099734-51099753 MS.gene86596:CDS 25.0%
! TATCGGTAATCATTATAGTA+TGG - chr6.1:51099794-51099813 None:intergenic 25.0%
!! CTTTTGAATATCTTTTATCG+AGG - chr6.1:51099736-51099755 None:intergenic 25.0%
GTAATCATTATAGTATGGTC+TGG - chr6.1:51099789-51099808 None:intergenic 30.0%
TTCCTACTATAACTCATTAC+CGG + chr6.1:51099425-51099444 MS.gene86596:CDS 30.0%
!! ACAAGATTTTCAAGATGATG+AGG + chr6.1:51099971-51099990 MS.gene86596:CDS 30.0%
AAAGATATTCAGCTCCTTTG+TGG - chr6.1:51099841-51099860 None:intergenic 35.0%
AGCTACAACAGTCTCAATAT+CGG - chr6.1:51099811-51099830 None:intergenic 35.0%
ATCCGGTAATGAGTTATAGT+AGG - chr6.1:51099430-51099449 None:intergenic 35.0%
ATTTGAAAAGCTATGCGTTG+GGG - chr6.1:51099928-51099947 None:intergenic 35.0%
CATTTGAAAAGCTATGCGTT+GGG - chr6.1:51099929-51099948 None:intergenic 35.0%
CTATAACTCATTACCGGATT+CGG + chr6.1:51099431-51099450 MS.gene86596:CDS 35.0%
GAAGAGGAACTTAGACAAAT+GGG + chr6.1:51099542-51099561 MS.gene86596:CDS 35.0%
TCATTTGAAAAGCTATGCGT+TGG - chr6.1:51099930-51099949 None:intergenic 35.0%
TGTTAGATATGTCTGAGTTG+TGG + chr6.1:51099883-51099902 MS.gene86596:CDS 35.0%
! AAGATGATGAGGTATCACTA+TGG + chr6.1:51099982-51100001 MS.gene86596:CDS 35.0%
! AAGGAGCTGAATATCTTTTG+TGG + chr6.1:51099843-51099862 MS.gene86596:CDS 35.0%
! AGGAGCTGAATATCTTTTGT+GGG + chr6.1:51099844-51099863 MS.gene86596:CDS 35.0%
! CAAATCCTAGTCTTTGTGTT+GGG - chr6.1:51099585-51099604 None:intergenic 35.0%
ACAAAGACTAGGATTTGGCT+AGG + chr6.1:51099588-51099607 MS.gene86596:CDS 40.0%
ACAAATGGGTGTGTGAAATG+AGG + chr6.1:51099556-51099575 MS.gene86596:CDS 40.0%
ATGGTCTGGTCTAAAAGCTT+CGG - chr6.1:51099775-51099794 None:intergenic 40.0%
CAAATGGGTGTGTGAAATGA+GGG + chr6.1:51099557-51099576 MS.gene86596:CDS 40.0%
CCAACACAAAGACTAGGATT+TGG + chr6.1:51099583-51099602 MS.gene86596:CDS 40.0%
CTGTCTTAATTTCGCAGACT+CGG + chr6.1:51099683-51099702 MS.gene86596:CDS 40.0%
GGAAGAGGAACTTAGACAAA+TGG + chr6.1:51099541-51099560 MS.gene86596:CDS 40.0%
TAGATATGTCTGAGTTGTGG+AGG + chr6.1:51099886-51099905 MS.gene86596:CDS 40.0%
TGAGGAAATGGAGTGTGAAT+AGG - chr6.1:51099394-51099413 None:intergenic 40.0%
TTCCTAACACCTCTATACAC+CGG - chr6.1:51099525-51099544 None:intergenic 40.0%
! AACTTTTCCAACAGCCGATA+TGG + chr6.1:51099611-51099630 MS.gene86596:CDS 40.0%
! AGAAGATGCTTCTGAGGAAA+TGG - chr6.1:51099406-51099425 None:intergenic 40.0%
! CCAAATCCTAGTCTTTGTGT+TGG - chr6.1:51099586-51099605 None:intergenic 40.0%
! GGAGCTGAATATCTTTTGTG+GGG + chr6.1:51099845-51099864 MS.gene86596:CDS 40.0%
! TCTTTTATCGAGGAAGTTGC+TGG - chr6.1:51099726-51099745 None:intergenic 40.0%
!! TGTATAGAGGTGTTAGGAAG+AGG + chr6.1:51099526-51099545 MS.gene86596:CDS 40.0%
AGCAGGGAGGAAGATATTCA+AGG + chr6.1:51099488-51099507 MS.gene86596:CDS 45.0%
ATCGAGGAAGTTGCTGGAAT+AGG - chr6.1:51099720-51099739 None:intergenic 45.0%
CGAGTCTGCGAAATTAAGAC+AGG - chr6.1:51099685-51099704 None:intergenic 45.0%
GCTAATCGTATCTCCGAATC+CGG - chr6.1:51099447-51099466 None:intergenic 45.0%
GGATTCGGAGATACGATTAG+CGG + chr6.1:51099446-51099465 MS.gene86596:CDS 45.0%
GTAGGAAGAAGATGCTTCTG+AGG - chr6.1:51099412-51099431 None:intergenic 45.0%
GTCTGAGTTGTGGAGGAATA+TGG + chr6.1:51099893-51099912 MS.gene86596:CDS 45.0%
TCCTAACACCTCTATACACC+GGG - chr6.1:51099524-51099543 None:intergenic 45.0%
!! TTAATTTCGCAGACTCGGTG+TGG + chr6.1:51099688-51099707 MS.gene86596:CDS 45.0%
AGTAACCCGAAGAAGAGAGC+AGG + chr6.1:51099471-51099490 MS.gene86596:CDS 50.0%
ATGTTGCTGCGATGGCATTG+AGG + chr6.1:51099649-51099668 MS.gene86596:CDS 50.0%
ATTCAAGGAAACTCGCCACC+CGG + chr6.1:51099503-51099522 MS.gene86596:CDS 50.0%
GTAACCCGAAGAAGAGAGCA+GGG + chr6.1:51099472-51099491 MS.gene86596:CDS 50.0%
GTCTGGTCTAAAAGCTTCGG+CGG - chr6.1:51099772-51099791 None:intergenic 50.0%
TAACACCTCTATACACCGGG+TGG - chr6.1:51099521-51099540 None:intergenic 50.0%
TTCCTCCCTGCTCTCTTCTT+CGG - chr6.1:51099480-51099499 None:intergenic 50.0%
! TGTTGCTGCGATGGCATTGA+GGG + chr6.1:51099650-51099669 MS.gene86596:CDS 50.0%
!! ACCCGGTGTATAGAGGTGTT+AGG + chr6.1:51099520-51099539 MS.gene86596:CDS 50.0%
AGCTATGCGTTGGGGACATG+AGG - chr6.1:51099920-51099939 None:intergenic 55.0%
ATGCCATCGCAGCAACATCG+TGG - chr6.1:51099647-51099666 None:intergenic 55.0%
GCTATGCGTTGGGGACATGA+GGG - chr6.1:51099919-51099938 None:intergenic 55.0%
GGGAGCCCAACACAAAGACT+AGG + chr6.1:51099577-51099596 MS.gene86596:CDS 55.0%
TCCTCCCTGCTCTCTTCTTC+GGG - chr6.1:51099479-51099498 None:intergenic 55.0%
TGCCATCGCAGCAACATCGT+GGG - chr6.1:51099646-51099665 None:intergenic 55.0%
TGTAGCTGTCGTCGCCACAA+AGG + chr6.1:51099824-51099843 MS.gene86596:CDS 55.0%
! GTTGCTGCGATGGCATTGAG+GGG + chr6.1:51099651-51099670 MS.gene86596:CDS 55.0%
!! ATTTCGCAGACTCGGTGTGG+CGG + chr6.1:51099691-51099710 MS.gene86596:CDS 55.0%
ACCCGAAGAAGAGAGCAGGG+AGG + chr6.1:51099475-51099494 MS.gene86596:CDS 60.0%
ACTCGCCACCCGGTGTATAG+AGG + chr6.1:51099513-51099532 MS.gene86596:CDS 60.0%
AGCCCACGATGTTGCTGCGA+TGG + chr6.1:51099641-51099660 MS.gene86596:CDS 60.0%
TCGCAGCAACATCGTGGGCT+CGG - chr6.1:51099641-51099660 None:intergenic 60.0%
CGCAGCAACATCGTGGGCTC+GGG - chr6.1:51099640-51099659 None:intergenic 65.0%
GTGGGCTCGGGCTGCCATAT+CGG - chr6.1:51099628-51099647 None:intergenic 65.0%
! CGGGCTGCCATATCGGCTGT+TGG - chr6.1:51099621-51099640 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 51099369 51100013 51099369 ID=MS.gene86596
chr6.1 mRNA 51099369 51100013 51099369 ID=MS.gene86596.t1;Parent=MS.gene86596
chr6.1 exon 51099369 51100013 51099369 ID=MS.gene86596.t1.exon1;Parent=MS.gene86596.t1
chr6.1 CDS 51099369 51100013 51099369 ID=cds.MS.gene86596.t1;Parent=MS.gene86596.t1
Gene Sequence

>MS.gene86596

ATGTTTACTACTAACAACTCTTCCTATTCACACTCCATTTCCTCAGAAGCATCTTCTTCCTACTATAACTCATTACCGGATTCGGAGATACGATTAGCGGCGAGTAACCCGAAGAAGAGAGCAGGGAGGAAGATATTCAAGGAAACTCGCCACCCGGTGTATAGAGGTGTTAGGAAGAGGAACTTAGACAAATGGGTGTGTGAAATGAGGGAGCCCAACACAAAGACTAGGATTTGGCTAGGAACTTTTCCAACAGCCGATATGGCAGCCCGAGCCCACGATGTTGCTGCGATGGCATTGAGGGGACGCTACGCCTGTCTTAATTTCGCAGACTCGGTGTGGCGGCTTCCTATTCCAGCAACTTCCTCGATAAAAGATATTCAAAAGGCAGCAACAAAAGCCGCCGAAGCTTTTAGACCAGACCATACTATAATGATTACCGATATTGAGACTGTTGTAGCTGTCGTCGCCACAAAGGAGCTGAATATCTTTTGTGGGGAAGAAGAGCATGAAATGTTAGATATGTCTGAGTTGTGGAGGAATATGGCCCTCATGTCCCCAACGCATAGCTTTTCAAATGATCATTATGAAGATATTCAAGCACAAGATTTTCAAGATGATGAGGTATCACTATGGAACTATTAA
Protein sequence

>MS.gene86596.t1

MFTTNNSSYSHSISSEASSSYYNSLPDSEIRLAASNPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNTKTRIWLGTFPTADMAARAHDVAAMALRGRYACLNFADSVWRLPIPATSSIKDIQKAATKAAEAFRPDHTIMITDIETVVAVVATKELNIFCGEEEHEMLDMSELWRNMALMSPTHSFSNDHYEDIQAQDFQDDEVSLWNY