AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30842


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30842.t1 MTR_6g465460 90.909 209 19 0 1 209 1 209 1.39e-129 366
MS.gene30842.t1 MTR_6g465450 83.412 211 33 1 1 209 1 211 8.81e-127 358
MS.gene30842.t1 MTR_6g465430 82.381 210 36 1 1 209 1 210 8.09e-119 338
MS.gene30842.t1 MTR_6g465420 79.621 211 40 2 1 209 1 210 2.41e-116 332
MS.gene30842.t1 MTR_6g465690 68.519 216 57 5 1 207 3 216 7.00e-97 283
MS.gene30842.t1 MTR_6g466000 63.810 210 63 4 17 215 20 227 3.75e-94 275
MS.gene30842.t1 MTR_6g465510 70.244 205 43 2 27 215 6 208 1.53e-91 267
MS.gene30842.t1 MTR_6g465530 69.898 196 49 4 27 215 6 198 2.19e-90 264
MS.gene30842.t1 MTR_6g466130 66.667 192 59 2 27 215 39 228 4.54e-83 246
MS.gene30842.t1 MTR_1g101600 59.375 192 68 4 28 215 15 200 2.70e-67 206
MS.gene30842.t1 MTR_6g465850 48.043 281 78 6 1 215 1 279 7.18e-66 204
MS.gene30842.t1 MTR_6g465990 51.905 210 68 5 17 215 6 193 2.93e-65 200
MS.gene30842.t1 MTR_6g466020 52.850 193 70 5 20 212 9 180 1.29e-56 177
MS.gene30842.t1 MTR_5g010940 43.723 231 108 6 1 215 3 227 3.99e-53 170
MS.gene30842.t1 MTR_4g102660 52.511 219 84 10 14 215 3 218 1.77e-51 166
MS.gene30842.t1 MTR_5g010930 44.828 203 94 4 29 215 24 224 1.98e-51 166
MS.gene30842.t1 MTR_5g010910 44.059 202 93 5 30 215 25 222 7.60e-48 157
MS.gene30842.t1 MTR_8g006410 58.242 91 38 0 38 128 36 126 6.13e-33 118
MS.gene30842.t1 MTR_3g110205 54.455 101 46 0 43 143 32 132 2.27e-32 116
MS.gene30842.t1 MTR_7g046260 56.383 94 41 0 35 128 42 135 8.12e-31 113
MS.gene30842.t1 MTR_7g117690 62.500 80 30 0 49 128 23 102 8.92e-31 111
MS.gene30842.t1 MTR_2g085015 42.197 173 90 4 6 174 5 171 1.06e-30 112
MS.gene30842.t1 MTR_5g012910 62.025 79 30 0 50 128 24 102 5.18e-30 109
MS.gene30842.t1 MTR_8g027465 49.550 111 49 3 22 128 9 116 2.79e-29 107
MS.gene30842.t1 MTR_8g013860 52.525 99 46 1 31 128 23 121 3.61e-28 105
MS.gene30842.t1 MTR_8g102800 50.943 106 49 2 24 128 8 111 1.08e-27 105
MS.gene30842.t1 MTR_2g101340 51.485 101 43 1 34 128 15 115 2.11e-27 103
MS.gene30842.t1 MTR_6g088405 60.256 78 31 0 51 128 41 118 3.47e-27 103
MS.gene30842.t1 MTR_4g100650 61.538 78 30 0 51 128 71 148 2.78e-26 102
MS.gene30842.t1 MTR_4g102670 55.696 79 34 1 50 128 11 88 1.24e-24 95.5
MS.gene30842.t1 MTR_4g035430 52.083 96 41 1 39 134 22 112 4.79e-24 95.5
MS.gene30842.t1 MTR_6g088425 49.587 121 50 2 24 134 10 129 7.74e-23 92.4
MS.gene30842.t1 MTR_5g008590 37.288 177 94 3 54 214 11 186 5.05e-21 86.7
MS.gene30842.t1 MTR_1g006660 59.494 79 32 0 50 128 43 121 7.06e-21 87.8
MS.gene30842.t1 MTR_1g060910 37.209 172 62 7 38 187 3 150 2.21e-18 79.3
MS.gene30842.t1 MTR_1g014780 41.667 96 48 2 53 140 37 132 3.22e-17 77.4
MS.gene30842.t1 MTR_2g435590 53.030 66 31 0 47 112 89 154 6.97e-17 77.0
MS.gene30842.t1 MTR_5g008550 50.000 82 41 0 54 135 21 102 1.04e-16 75.5
MS.gene30842.t1 MTR_3g105510 50.000 70 35 0 54 123 37 106 1.56e-16 75.9
MS.gene30842.t1 MTR_5g008470 45.000 80 44 0 56 135 77 156 1.66e-16 74.7
MS.gene30842.t1 MTR_5g083340 62.069 58 22 0 54 111 85 142 1.68e-16 77.4
MS.gene30842.t1 MTR_1g014820 41.304 92 50 1 53 140 26 117 1.94e-16 75.9
MS.gene30842.t1 MTR_3g074130 51.351 74 34 1 38 111 136 207 2.00e-16 77.0
MS.gene30842.t1 MTR_2g105380 39.000 100 58 1 12 111 78 174 2.59e-16 76.6
MS.gene30842.t1 MTR_3g102100 56.897 58 25 0 54 111 45 102 4.07e-16 73.2
MS.gene30842.t1 MTR_1g090170 53.968 63 29 0 49 111 147 209 4.94e-16 75.5
MS.gene30842.t1 MTR_2g043030 27.368 190 106 4 53 215 18 202 5.13e-16 73.6
MS.gene30842.t1 MTR_7g021010 42.697 89 50 1 45 132 2 90 6.36e-16 72.0
MS.gene30842.t1 MTR_8g090350 34.228 149 90 4 53 195 112 258 6.81e-16 74.7
MS.gene30842.t1 MTR_2g043050 42.391 92 52 1 53 143 18 109 8.43e-16 73.6
MS.gene30842.t1 MTR_5g062700 57.627 59 25 0 53 111 172 230 8.88e-16 75.1
MS.gene30842.t1 MTR_1g014860 39.130 92 49 1 49 133 17 108 8.97e-16 73.6
MS.gene30842.t1 MTR_1g090170 53.968 63 29 0 49 111 234 296 9.07e-16 75.5
MS.gene30842.t1 MTR_1g101550 40.426 141 72 3 54 183 57 196 1.04e-15 73.6
MS.gene30842.t1 MTR_2g090235 57.627 59 25 0 53 111 217 275 1.45e-15 74.7
MS.gene30842.t1 MTR_7g020980 50.000 64 32 0 50 113 47 110 1.60e-15 72.0
MS.gene30842.t1 MTR_1g087920 37.273 110 57 2 4 111 35 134 1.73e-15 73.9
MS.gene30842.t1 MTR_1g014800 39.785 93 49 1 53 138 30 122 2.58e-15 72.0
MS.gene30842.t1 MTR_7g021010 42.697 89 50 1 45 132 41 129 2.66e-15 71.2
MS.gene30842.t1 MTR_1g019110 51.613 62 30 0 54 115 44 105 2.85e-15 71.2
MS.gene30842.t1 MTR_1g028560 43.902 82 41 1 54 135 115 191 2.89e-15 73.6
MS.gene30842.t1 MTR_4g086190 36.066 122 69 2 54 173 96 210 3.16e-15 72.0
MS.gene30842.t1 MTR_3g105480 50.000 68 34 0 56 123 33 100 4.28e-15 71.6
MS.gene30842.t1 MTR_8g092460 53.333 60 28 0 54 113 145 204 5.14e-15 72.8
MS.gene30842.t1 MTR_5g083330 50.685 73 36 0 39 111 20 92 7.74e-15 72.0
MS.gene30842.t1 MTR_4g086220 58.929 56 23 0 54 109 96 151 8.17e-15 71.2
MS.gene30842.t1 MTR_2g089170 60.714 56 22 0 54 109 65 120 9.71e-15 70.1
MS.gene30842.t1 MTR_3g053690 55.385 65 26 1 45 109 21 82 1.39e-14 70.5
MS.gene30842.t1 MTR_7g028925 53.333 60 25 1 53 112 28 84 1.81e-14 67.0
MS.gene30842.t1 MTR_4g086160 57.143 56 24 0 54 109 96 151 2.25e-14 69.7
MS.gene30842.t1 MTR_5g016750 53.448 58 27 0 54 111 25 82 2.43e-14 68.9
MS.gene30842.t1 MTR_2g078680 48.684 76 36 1 34 109 14 86 2.67e-14 69.3
MS.gene30842.t1 MTR_0939s0010 58.929 56 23 0 54 109 65 120 3.21e-14 68.9
MS.gene30842.t1 MTR_4g086165 57.143 56 24 0 54 109 82 137 3.31e-14 68.9
MS.gene30842.t1 MTR_8g022820 41.772 79 43 1 47 125 117 192 3.46e-14 70.9
MS.gene30842.t1 MTR_8g022820 41.772 79 43 1 47 125 117 192 3.46e-14 70.9
MS.gene30842.t1 MTR_8g022820 41.772 79 43 1 47 125 116 191 3.48e-14 70.9
MS.gene30842.t1 MTR_4g114570 50.725 69 27 1 54 122 7 68 4.41e-14 68.6
MS.gene30842.t1 MTR_5g082950 58.929 56 23 0 54 109 66 121 4.80e-14 70.1
MS.gene30842.t1 MTR_4g010640 55.357 56 25 0 54 109 7 62 9.32e-14 67.8
MS.gene30842.t1 MTR_7g092190 57.143 56 24 0 54 109 30 85 1.01e-13 68.9
MS.gene30842.t1 MTR_3g106290 58.929 56 23 0 54 109 8 63 1.22e-13 67.0
MS.gene30842.t1 MTR_1g074310 51.613 62 29 1 54 114 21 82 1.29e-13 65.9
MS.gene30842.t1 MTR_3g090760 32.544 169 100 4 28 191 96 255 1.36e-13 68.9
MS.gene30842.t1 MTR_2g103700 51.667 60 29 0 54 113 7 66 1.45e-13 66.6
MS.gene30842.t1 MTR_4g008860 58.929 56 23 0 54 109 8 63 1.66e-13 66.6
MS.gene30842.t1 MTR_5g009620 40.000 115 46 4 41 149 97 194 2.01e-13 68.2
MS.gene30842.t1 MTR_1g048610 56.140 57 24 1 54 109 89 145 2.06e-13 67.0
MS.gene30842.t1 MTR_2g438180 53.226 62 28 1 54 114 14 75 2.49e-13 65.1
MS.gene30842.t1 MTR_4g078710 40.230 87 44 1 54 140 28 106 2.53e-13 66.6
MS.gene30842.t1 MTR_4g100450 42.353 85 48 1 30 113 130 214 5.23e-13 67.0
MS.gene30842.t1 MTR_2g015050 54.386 57 25 1 54 109 134 190 5.38e-13 66.6
MS.gene30842.t1 MTR_1g070070 54.386 57 25 1 54 109 21 77 5.65e-13 64.3
MS.gene30842.t1 MTR_8g099215 45.000 80 38 1 36 109 83 162 6.48e-13 66.6
MS.gene30842.t1 MTR_2g014340 53.571 56 26 0 54 109 19 74 6.58e-13 65.5
MS.gene30842.t1 MTR_4g100420 52.239 67 29 2 48 113 153 217 1.12e-12 65.9
MS.gene30842.t1 MTR_2g043040 50.847 59 29 0 53 111 18 76 1.39e-12 65.1
MS.gene30842.t1 MTR_1g074230 56.140 57 24 1 54 109 19 75 1.92e-12 62.8
MS.gene30842.t1 MTR_4g054360 34.559 136 70 4 4 138 82 199 2.02e-12 65.1
MS.gene30842.t1 MTR_5g085100 40.816 98 47 3 23 119 17 104 2.86e-12 64.7
MS.gene30842.t1 MTR_2g014300 55.357 56 25 0 54 109 15 70 3.28e-12 62.8
MS.gene30842.t1 MTR_4g054740 37.500 96 53 2 46 140 89 178 4.06e-12 63.5
MS.gene30842.t1 MTR_8g069360 51.786 56 27 0 54 109 44 99 4.50e-12 64.7
MS.gene30842.t1 MTR_7g085810 29.012 162 96 4 54 197 30 190 4.61e-12 63.9
MS.gene30842.t1 MTR_1g090290 51.613 62 27 2 49 109 110 169 7.07e-12 62.4
MS.gene30842.t1 MTR_2g019750 33.065 124 74 2 39 162 37 151 9.52e-12 63.2
MS.gene30842.t1 MTR_2g043020 50.877 57 28 0 53 109 18 74 1.00e-11 62.0
MS.gene30842.t1 MTR_2g016730 50.847 59 29 0 51 109 20 78 1.05e-11 63.5
MS.gene30842.t1 MTR_5g008540 47.541 61 32 0 56 116 26 86 1.17e-11 59.3
MS.gene30842.t1 MTR_5g032820 53.571 56 26 0 54 109 46 101 1.36e-11 63.2
MS.gene30842.t1 MTR_4g088005 48.438 64 32 1 47 109 50 113 1.77e-11 59.7
MS.gene30842.t1 MTR_4g111915 45.763 59 32 0 54 112 53 111 2.40e-11 59.7
MS.gene30842.t1 MTR_5g085070 47.945 73 28 2 47 119 47 109 3.54e-11 61.6
MS.gene30842.t1 MTR_1g074250 46.875 64 32 1 51 112 16 79 3.68e-11 58.9
MS.gene30842.t1 MTR_5g008790 48.333 60 29 1 54 111 18 77 4.48e-11 59.7
MS.gene30842.t1 MTR_4g054860 43.662 71 39 1 46 115 123 193 4.83e-11 61.2
MS.gene30842.t1 MTR_5g075570 46.667 60 32 0 50 109 120 179 5.23e-11 61.2
MS.gene30842.t1 MTR_4g119270 44.444 72 37 1 38 109 40 108 6.02e-11 61.2
MS.gene30842.t1 MTR_8g032610 48.333 60 31 0 54 113 27 86 6.52e-11 60.8
MS.gene30842.t1 MTR_4g112490 45.763 59 32 0 54 112 53 111 8.20e-11 59.7
MS.gene30842.t1 MTR_8g006840 50.877 57 27 1 54 109 125 181 9.12e-11 59.3
MS.gene30842.t1 MTR_3g095190 52.055 73 34 1 54 125 170 242 9.69e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30842.t1 AT4G25470 54.726 201 71 5 27 215 24 216 5.29e-62 192
MS.gene30842.t1 AT4G25480 52.752 218 88 6 7 215 5 216 3.26e-59 186
MS.gene30842.t1 AT5G51990 45.614 228 82 6 21 215 4 222 6.52e-58 182
MS.gene30842.t1 AT1G63030 47.938 194 81 4 27 215 3 181 1.15e-54 172
MS.gene30842.t1 AT1G63030 47.938 194 81 4 27 215 3 181 1.15e-54 172
MS.gene30842.t1 AT4G25490 52.850 193 77 4 32 215 26 213 2.95e-54 173
MS.gene30842.t1 AT1G12610 49.419 172 75 2 27 198 3 162 3.70e-54 172
MS.gene30842.t1 AT5G25810 49.593 123 55 1 13 135 2 117 2.21e-32 117
MS.gene30842.t1 AT5G11590 51.754 114 51 1 25 134 18 131 7.58e-31 113
MS.gene30842.t1 AT2G44940 59.783 92 37 0 43 134 89 180 1.50e-30 114
MS.gene30842.t1 AT4G32800 60.000 85 34 0 50 134 15 99 3.76e-30 111
MS.gene30842.t1 AT3G16280 63.291 79 29 0 50 128 57 135 1.05e-28 108
MS.gene30842.t1 AT3G16280 63.291 79 29 0 50 128 75 153 1.52e-28 108
MS.gene30842.t1 AT1G01250 60.000 80 32 0 49 128 40 119 1.66e-28 106
MS.gene30842.t1 AT2G35700 60.000 80 32 0 49 128 40 119 3.28e-28 105
MS.gene30842.t1 AT4G16750 56.790 81 35 0 49 129 35 115 5.71e-27 102
MS.gene30842.t1 AT2G36450 39.888 178 90 6 50 215 11 183 7.06e-27 102
MS.gene30842.t1 AT3G60490 53.846 91 41 1 39 128 55 145 6.84e-26 101
MS.gene30842.t1 AT2G25820 60.526 76 30 0 53 128 25 100 7.61e-25 97.8
MS.gene30842.t1 AT1G71450 54.945 91 41 0 53 143 23 113 6.90e-24 94.0
MS.gene30842.t1 AT5G52020 37.714 175 96 5 50 215 61 231 4.97e-20 85.1
MS.gene30842.t1 AT2G47520 43.878 98 51 1 15 112 15 108 6.61e-20 83.2
MS.gene30842.t1 AT5G21960 30.660 212 99 6 52 215 5 216 3.11e-19 82.8
MS.gene30842.t1 AT4G13620 51.282 78 37 1 35 111 212 289 6.11e-19 84.3
MS.gene30842.t1 AT1G19210 31.319 182 97 5 54 215 12 185 6.93e-19 80.9
MS.gene30842.t1 AT1G77200 58.442 77 32 0 52 128 41 117 1.65e-18 81.3
MS.gene30842.t1 AT1G33760 52.874 87 41 0 54 140 20 106 7.07e-18 78.2
MS.gene30842.t1 AT5G47230 35.503 169 97 5 30 193 133 294 9.00e-18 80.1
MS.gene30842.t1 AT2G22200 38.017 121 65 2 53 173 70 180 9.37e-18 79.7
MS.gene30842.t1 AT1G22190 53.425 73 32 1 39 111 70 140 1.08e-17 79.3
MS.gene30842.t1 AT1G46768 57.143 63 26 1 49 111 27 88 1.83e-17 76.3
MS.gene30842.t1 AT1G46768 57.143 63 26 1 49 111 27 88 1.85e-17 76.6
MS.gene30842.t1 AT1G46768 57.143 63 26 1 49 111 27 88 1.85e-17 76.6
MS.gene30842.t1 AT4G39780 57.377 61 26 0 49 109 88 148 2.49e-17 78.6
MS.gene30842.t1 AT3G16770 51.282 78 31 1 34 111 66 136 5.75e-17 77.4
MS.gene30842.t1 AT4G06746 53.226 62 29 0 54 115 36 97 8.34e-17 74.7
MS.gene30842.t1 AT2G20880 31.792 173 108 3 30 202 165 327 8.37e-17 77.8
MS.gene30842.t1 AT1G21910 57.627 59 25 0 54 112 50 108 9.28e-17 76.3
MS.gene30842.t1 AT3G11020 58.730 63 26 0 51 113 75 137 9.83e-17 77.8
MS.gene30842.t1 AT1G12630 39.205 176 86 5 50 205 15 189 1.47e-16 75.1
MS.gene30842.t1 AT1G22810 34.286 140 55 4 54 176 14 133 5.26e-16 72.4
MS.gene30842.t1 AT4G28140 32.895 152 77 5 36 181 120 252 6.16e-16 75.1
MS.gene30842.t1 AT5G65130 45.455 99 40 3 28 113 73 170 6.21e-16 74.7
MS.gene30842.t1 AT1G78080 57.627 59 25 0 53 111 151 209 6.26e-16 75.5
MS.gene30842.t1 AT5G65130 45.455 99 40 3 28 113 75 172 6.48e-16 74.7
MS.gene30842.t1 AT2G33710 48.101 79 36 1 49 122 65 143 8.26e-16 73.6
MS.gene30842.t1 AT2G33710 48.101 79 36 1 49 122 65 143 1.37e-15 73.2
MS.gene30842.t1 AT1G74930 42.500 80 46 0 54 133 21 100 1.49e-15 72.4
MS.gene30842.t1 AT3G50260 42.857 91 43 2 47 133 14 99 2.45e-15 70.9
MS.gene30842.t1 AT5G05410 59.322 59 24 0 54 112 79 137 2.55e-15 73.6
MS.gene30842.t1 AT1G36060 59.649 57 23 0 53 109 142 198 2.88e-15 73.6
MS.gene30842.t1 AT1G71520 43.299 97 46 3 48 138 8 101 3.24e-15 70.1
MS.gene30842.t1 AT5G05410 59.322 59 24 0 54 112 79 137 3.56e-15 73.6
MS.gene30842.t1 AT4G36900 53.333 60 28 0 50 109 26 85 4.03e-15 71.2
MS.gene30842.t1 AT2G23340 49.231 65 33 0 54 118 28 92 8.27e-15 70.1
MS.gene30842.t1 AT5G67190 51.724 58 28 0 54 111 21 78 8.60e-15 70.1
MS.gene30842.t1 AT5G13330 51.562 64 29 1 50 113 37 98 2.00e-14 69.7
MS.gene30842.t1 AT5G61890 51.562 64 29 1 50 113 88 149 2.51e-14 70.1
MS.gene30842.t1 AT5G07580 49.367 79 37 2 48 125 106 182 2.84e-14 69.3
MS.gene30842.t1 AT1G15360 57.143 56 24 0 54 109 7 62 2.99e-14 68.9
MS.gene30842.t1 AT1G15360 57.143 56 24 0 54 109 7 62 2.99e-14 68.9
MS.gene30842.t1 AT5G44210 48.571 70 29 1 54 123 33 95 3.62e-14 68.9
MS.gene30842.t1 AT3G15210 55.556 63 25 1 47 109 21 80 4.90e-14 68.9
MS.gene30842.t1 AT4G31060 45.122 82 42 2 54 132 27 108 5.18e-14 68.2
MS.gene30842.t1 AT1G75490 50.000 70 35 0 53 122 41 110 5.71e-14 68.2
MS.gene30842.t1 AT5G61600 59.016 61 22 2 50 109 86 144 6.96e-14 68.6
MS.gene30842.t1 AT4G17490 47.126 87 41 3 30 113 113 197 7.52e-14 69.3
MS.gene30842.t1 AT3G57600 34.906 106 68 1 54 159 28 132 8.42e-14 68.9
MS.gene30842.t1 AT4G11140 45.205 73 34 1 54 126 87 153 8.77e-14 68.9
MS.gene30842.t1 AT1G72360 36.937 111 61 1 22 132 42 143 1.30e-13 68.2
MS.gene30842.t1 AT4G27950 54.386 57 26 0 54 110 118 174 1.32e-13 68.9
MS.gene30842.t1 AT3G61630 46.667 75 34 1 54 128 105 173 1.70e-13 68.6
MS.gene30842.t1 AT1G72360 41.860 86 41 1 47 132 18 94 1.87e-13 67.0
MS.gene30842.t1 AT5G25390 53.571 56 26 0 54 109 7 62 2.03e-13 66.6
MS.gene30842.t1 AT5G51190 55.556 63 25 2 48 109 68 128 2.23e-13 67.0
MS.gene30842.t1 AT5G43410 47.887 71 34 2 40 109 3 71 3.13e-13 64.7
MS.gene30842.t1 AT1G72360 41.860 86 41 1 47 132 69 145 4.47e-13 66.6
MS.gene30842.t1 AT5G53290 43.836 73 41 0 38 110 109 181 5.46e-13 67.4
MS.gene30842.t1 AT5G25190 57.143 56 24 0 54 109 8 63 7.17e-13 64.7
MS.gene30842.t1 AT3G23230 50.000 62 30 1 54 114 20 81 9.59e-13 63.5
MS.gene30842.t1 AT1G12890 44.872 78 40 1 32 109 2 76 1.06e-12 65.1
MS.gene30842.t1 AT2G40340 40.659 91 53 1 54 143 14 104 1.46e-12 65.5
MS.gene30842.t1 AT2G40340 40.659 91 53 1 54 143 14 104 1.46e-12 65.5
MS.gene30842.t1 AT2G40340 40.659 91 53 1 54 143 14 104 1.46e-12 65.5
MS.gene30842.t1 AT5G18450 56.140 57 25 0 53 109 33 89 1.47e-12 65.9
MS.gene30842.t1 AT2G46310 35.455 110 51 3 54 163 99 188 1.88e-12 65.5
MS.gene30842.t1 AT3G20310 52.459 61 29 0 49 109 22 82 2.28e-12 64.7
MS.gene30842.t1 AT1G03800 47.059 68 33 1 42 109 44 108 2.58e-12 64.3
MS.gene30842.t1 AT2G40340 40.659 91 53 1 54 143 79 169 4.09e-12 64.7
MS.gene30842.t1 AT2G40340 51.724 58 28 0 54 111 72 129 4.21e-12 64.3
MS.gene30842.t1 AT2G40340 40.659 91 53 1 54 143 72 162 4.88e-12 64.3
MS.gene30842.t1 AT5G64750 40.230 87 50 2 64 149 195 280 5.77e-12 64.3
MS.gene30842.t1 AT1G28370 51.786 56 27 0 54 109 20 75 7.13e-12 62.0
MS.gene30842.t1 AT1G28360 51.667 60 29 0 54 113 12 71 7.17e-12 62.4
MS.gene30842.t1 AT5G19790 51.724 58 28 0 54 111 22 79 8.75e-12 63.2
MS.gene30842.t1 AT1G28370 51.786 56 27 0 54 109 58 113 9.64e-12 62.4
MS.gene30842.t1 AT5G47220 52.632 57 26 1 54 109 117 173 1.89e-11 62.0
MS.gene30842.t1 AT4G23750 49.123 57 29 0 54 110 122 178 2.07e-11 62.8
MS.gene30842.t1 AT4G23750 49.123 57 29 0 54 110 122 178 2.07e-11 62.8
MS.gene30842.t1 AT1G24590 47.143 70 32 1 54 123 58 122 2.47e-11 62.4
MS.gene30842.t1 AT1G50640 52.381 63 27 1 47 109 24 83 2.99e-11 61.2
MS.gene30842.t1 AT1G12980 53.571 56 26 0 54 109 57 112 3.16e-11 62.0
MS.gene30842.t1 AT5G13910 44.595 74 37 1 54 127 20 89 3.87e-11 60.8
MS.gene30842.t1 AT5G18560 45.070 71 38 1 39 109 41 110 5.24e-11 61.6

Find 61 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTCCCTGCTCTCTTCTT+CGG 0.270452 6.2:-58793581 None:intergenic
TCCTCCCTGCTCTCTTCTTC+GGG 0.299122 6.2:-58793580 None:intergenic
ATGGGCTCGGGCTGCCATAT+CGG 0.344047 6.2:-58793729 None:intergenic
AGCTATGCGTAGGGGACATT+AGG 0.349071 6.2:-58794021 None:intergenic
TTCCTACTATAACTCATTAC+CGG 0.377606 6.2:+58793529 MS.gene30842:CDS
TGAGGAAATGGAGTGTGAAT+AGG 0.393355 6.2:-58793495 None:intergenic
GTCTGAGTTGTGGAGGAATA+TGG 0.404875 6.2:+58793997 MS.gene30842:CDS
AAAGATATTCAGCTCCTTTG+TGG 0.404977 6.2:-58793942 None:intergenic
ATCGAGGAAGTTGCTGGAAT+AGG 0.421748 6.2:-58793821 None:intergenic
GGAAGAGGAACTTAGACAAA+TGG 0.425545 6.2:+58793645 MS.gene30842:CDS
CTATAACTCATTACCGGATT+CGG 0.428938 6.2:+58793535 MS.gene30842:CDS
TTGCAGCAACATCATGGGCT+CGG 0.431723 6.2:-58793742 None:intergenic
TGTCCCCTACGCATAGCTTT+GGG 0.437452 6.2:+58794026 MS.gene30842:CDS
ATTCTCTGGTCTTAAAGCTT+CGG 0.442303 6.2:-58793876 None:intergenic
GCTATGCGTAGGGGACATTA+GGG 0.449422 6.2:-58794020 None:intergenic
CATATCCTAGTCTTCGTGTT+GGG 0.459434 6.2:-58793686 None:intergenic
CGGGCTGCCATATCGGCTGT+TGG 0.466848 6.2:-58793722 None:intergenic
AGCTACAACAGTCTCAATAT+CGG 0.471917 6.2:-58793912 None:intergenic
CCAACACGAAGACTAGGATA+TGG 0.472745 6.2:+58793687 MS.gene30842:CDS
ATGTCCCCTACGCATAGCTT+TGG 0.484533 6.2:+58794025 MS.gene30842:CDS
TGCAGCAACATCATGGGCTC+GGG 0.490501 6.2:-58793741 None:intergenic
ATGCCATTGCAGCAACATCA+TGG 0.498125 6.2:-58793748 None:intergenic
ACTCGCCACCCGGTGTATAG+AGG 0.498536 6.2:+58793617 MS.gene30842:CDS
CTCGATAAAAGATATTCAAA+AGG 0.509288 6.2:+58793838 MS.gene30842:CDS
CTACGCCTGTCTCAATTTCG+CGG 0.511934 6.2:+58793781 MS.gene30842:CDS
GTAATCATTATAGTATTCTC+TGG 0.514764 6.2:-58793890 None:intergenic
CTCTGGTCTTAAAGCTTCGG+TGG 0.522074 6.2:-58793873 None:intergenic
GAAGAGGAACTTAGACAAAT+GGG 0.523345 6.2:+58793646 MS.gene30842:CDS
AGTAACCCGAAGAAGAGAGC+AGG 0.528959 6.2:+58793575 MS.gene30842:CDS
GCTAATCGTATCTCCGAATC+CGG 0.532911 6.2:-58793548 None:intergenic
TGTTGCTGCAATGGCATTGA+GGG 0.537002 6.2:+58793754 MS.gene30842:CDS
TGTATAGAGGTGTTAGGAAG+AGG 0.541975 6.2:+58793630 MS.gene30842:CDS
ACCCGGTGTATAGAGGTGTT+AGG 0.542359 6.2:+58793624 MS.gene30842:CDS
TGCCATTGCAGCAACATCAT+GGG 0.543909 6.2:-58793747 None:intergenic
ATCCGGTAATGAGTTATAGT+AGG 0.553057 6.2:-58793531 None:intergenic
AGCCCATGATGTTGCTGCAA+TGG 0.555409 6.2:+58793745 MS.gene30842:CDS
GGGAGCCCAACACGAAGACT+AGG 0.562532 6.2:+58793681 MS.gene30842:CDS
CCATATCCTAGTCTTCGTGT+TGG 0.566274 6.2:-58793687 None:intergenic
AGCAGGGAGGAAGATATTCA+AGG 0.572499 6.2:+58793592 MS.gene30842:CDS
CAAATGGGTGTGTGAAATGA+GGG 0.573881 6.2:+58793661 MS.gene30842:CDS
TCATACCCAAAGCTATGCGT+AGG 0.583004 6.2:-58794031 None:intergenic
ACAAATGGGTGTGTGAAATG+AGG 0.584388 6.2:+58793660 MS.gene30842:CDS
CATACCCAAAGCTATGCGTA+GGG 0.586017 6.2:-58794030 None:intergenic
TCCTAACACCTCTATACACC+GGG 0.586398 6.2:-58793625 None:intergenic
ATGTTGCTGCAATGGCATTG+AGG 0.588097 6.2:+58793753 MS.gene30842:CDS
TGAGTCCGCGAAATTGAGAC+AGG 0.588168 6.2:-58793786 None:intergenic
TTCCTAACACCTCTATACAC+CGG 0.602821 6.2:-58793626 None:intergenic
ATTCAAGGAAACTCGCCACC+CGG 0.604485 6.2:+58793607 MS.gene30842:CDS
TGTTAAATATGTCTGAGTTG+TGG 0.612225 6.2:+58793987 MS.gene30842:CDS
ACGAAGACTAGGATATGGCT+AGG 0.620318 6.2:+58793692 MS.gene30842:CDS
GTAACCCGAAGAAGAGAGCA+GGG 0.625383 6.2:+58793576 MS.gene30842:CDS
AAGATGATGAGGTATCACTC+TGG 0.642662 6.2:+58794089 MS.gene30842:CDS
TCAATTTCGCGGACTCAGTG+TGG 0.672252 6.2:+58793792 MS.gene30842:CDS
GGATTCGGAGATACGATTAG+CGG 0.674411 6.2:+58793550 MS.gene30842:CDS
TAAATATGTCTGAGTTGTGG+AGG 0.678753 6.2:+58793990 MS.gene30842:CDS
TGTAGCTATCGTCGCCACAA+AGG 0.698575 6.2:+58793928 MS.gene30842:CDS
ACCCGAAGAAGAGAGCAGGG+AGG 0.701611 6.2:+58793579 MS.gene30842:CDS
ATTTCGCGGACTCAGTGTGG+CGG 0.705241 6.2:+58793795 MS.gene30842:CDS
GTTGCTGCAATGGCATTGAG+GGG 0.718595 6.2:+58793755 MS.gene30842:CDS
ATACCCAAAGCTATGCGTAG+GGG 0.718683 6.2:-58794029 None:intergenic
TAACACCTCTATACACCGGG+TGG 0.755465 6.2:-58793622 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CTCGATAAAAGATATTCAAA+AGG + chr6.2:58793838-58793857 MS.gene30842:CDS 25.0%
! GTAATCATTATAGTATTCTC+TGG - chr6.2:58793893-58793912 None:intergenic 25.0%
!! CTTTTGAATATCTTTTATCG+AGG - chr6.2:58793840-58793859 None:intergenic 25.0%
TGTTAAATATGTCTGAGTTG+TGG + chr6.2:58793987-58794006 MS.gene30842:CDS 30.0%
TTCCTACTATAACTCATTAC+CGG + chr6.2:58793529-58793548 MS.gene30842:CDS 30.0%
!! ACAAGATTTTCAAGATGATG+AGG + chr6.2:58794078-58794097 MS.gene30842:CDS 30.0%
AAAGATATTCAGCTCCTTTG+TGG - chr6.2:58793945-58793964 None:intergenic 35.0%
AGCTACAACAGTCTCAATAT+CGG - chr6.2:58793915-58793934 None:intergenic 35.0%
ATCCGGTAATGAGTTATAGT+AGG - chr6.2:58793534-58793553 None:intergenic 35.0%
CTATAACTCATTACCGGATT+CGG + chr6.2:58793535-58793554 MS.gene30842:CDS 35.0%
GAAGAGGAACTTAGACAAAT+GGG + chr6.2:58793646-58793665 MS.gene30842:CDS 35.0%
TAAATATGTCTGAGTTGTGG+AGG + chr6.2:58793990-58794009 MS.gene30842:CDS 35.0%
! AAGGAGCTGAATATCTTTTG+TGG + chr6.2:58793947-58793966 MS.gene30842:CDS 35.0%
! AGGAGCTGAATATCTTTTGT+GGG + chr6.2:58793948-58793967 MS.gene30842:CDS 35.0%
!! AGAAGATGCTTTTGAGGAAA+TGG - chr6.2:58793510-58793529 None:intergenic 35.0%
!! ATTCTCTGGTCTTAAAGCTT+CGG - chr6.2:58793879-58793898 None:intergenic 35.0%
ACAAATGGGTGTGTGAAATG+AGG + chr6.2:58793660-58793679 MS.gene30842:CDS 40.0%
CAAATGGGTGTGTGAAATGA+GGG + chr6.2:58793661-58793680 MS.gene30842:CDS 40.0%
GGAAGAGGAACTTAGACAAA+TGG + chr6.2:58793645-58793664 MS.gene30842:CDS 40.0%
TGAGGAAATGGAGTGTGAAT+AGG - chr6.2:58793498-58793517 None:intergenic 40.0%
TTCCTAACACCTCTATACAC+CGG - chr6.2:58793629-58793648 None:intergenic 40.0%
! AACTTTTCCAACAGCCGATA+TGG + chr6.2:58793715-58793734 MS.gene30842:CDS 40.0%
! AAGATGATGAGGTATCACTC+TGG + chr6.2:58794089-58794108 MS.gene30842:CDS 40.0%
! CATATCCTAGTCTTCGTGTT+GGG - chr6.2:58793689-58793708 None:intergenic 40.0%
! GGAGCTGAATATCTTTTGTG+GGG + chr6.2:58793949-58793968 MS.gene30842:CDS 40.0%
! GTAGGAAGAAGATGCTTTTG+AGG - chr6.2:58793516-58793535 None:intergenic 40.0%
! TCTTTTATCGAGGAAGTTGC+TGG - chr6.2:58793830-58793849 None:intergenic 40.0%
!! TGTATAGAGGTGTTAGGAAG+AGG + chr6.2:58793630-58793649 MS.gene30842:CDS 40.0%
ACGAAGACTAGGATATGGCT+AGG + chr6.2:58793692-58793711 MS.gene30842:CDS 45.0%
AGCAGGGAGGAAGATATTCA+AGG + chr6.2:58793592-58793611 MS.gene30842:CDS 45.0%
ATACCCAAAGCTATGCGTAG+GGG - chr6.2:58794032-58794051 None:intergenic 45.0%
ATCGAGGAAGTTGCTGGAAT+AGG - chr6.2:58793824-58793843 None:intergenic 45.0%
ATGCCATTGCAGCAACATCA+TGG - chr6.2:58793751-58793770 None:intergenic 45.0%
ATGTTGCTGCAATGGCATTG+AGG + chr6.2:58793753-58793772 MS.gene30842:CDS 45.0%
CATACCCAAAGCTATGCGTA+GGG - chr6.2:58794033-58794052 None:intergenic 45.0%
CCAACACGAAGACTAGGATA+TGG + chr6.2:58793687-58793706 MS.gene30842:CDS 45.0%
GCTAATCGTATCTCCGAATC+CGG - chr6.2:58793551-58793570 None:intergenic 45.0%
GGATTCGGAGATACGATTAG+CGG + chr6.2:58793550-58793569 MS.gene30842:CDS 45.0%
GTCTGAGTTGTGGAGGAATA+TGG + chr6.2:58793997-58794016 MS.gene30842:CDS 45.0%
TCATACCCAAAGCTATGCGT+AGG - chr6.2:58794034-58794053 None:intergenic 45.0%
TCCTAACACCTCTATACACC+GGG - chr6.2:58793628-58793647 None:intergenic 45.0%
TGCCATTGCAGCAACATCAT+GGG - chr6.2:58793750-58793769 None:intergenic 45.0%
! CCATATCCTAGTCTTCGTGT+TGG - chr6.2:58793690-58793709 None:intergenic 45.0%
! TGTTGCTGCAATGGCATTGA+GGG + chr6.2:58793754-58793773 MS.gene30842:CDS 45.0%
AGCCCATGATGTTGCTGCAA+TGG + chr6.2:58793745-58793764 MS.gene30842:CDS 50.0%
AGCTATGCGTAGGGGACATT+AGG - chr6.2:58794024-58794043 None:intergenic 50.0%
AGTAACCCGAAGAAGAGAGC+AGG + chr6.2:58793575-58793594 MS.gene30842:CDS 50.0%
ATGTCCCCTACGCATAGCTT+TGG + chr6.2:58794025-58794044 MS.gene30842:CDS 50.0%
ATTCAAGGAAACTCGCCACC+CGG + chr6.2:58793607-58793626 MS.gene30842:CDS 50.0%
CTACGCCTGTCTCAATTTCG+CGG + chr6.2:58793781-58793800 MS.gene30842:CDS 50.0%
GCTATGCGTAGGGGACATTA+GGG - chr6.2:58794023-58794042 None:intergenic 50.0%
GTAACCCGAAGAAGAGAGCA+GGG + chr6.2:58793576-58793595 MS.gene30842:CDS 50.0%
TAACACCTCTATACACCGGG+TGG - chr6.2:58793625-58793644 None:intergenic 50.0%
TCAATTTCGCGGACTCAGTG+TGG + chr6.2:58793792-58793811 MS.gene30842:CDS 50.0%
TGAGTCCGCGAAATTGAGAC+AGG - chr6.2:58793789-58793808 None:intergenic 50.0%
TGTAGCTATCGTCGCCACAA+AGG + chr6.2:58793928-58793947 MS.gene30842:CDS 50.0%
TGTCCCCTACGCATAGCTTT+GGG + chr6.2:58794026-58794045 MS.gene30842:CDS 50.0%
TTCCTCCCTGCTCTCTTCTT+CGG - chr6.2:58793584-58793603 None:intergenic 50.0%
TTGCAGCAACATCATGGGCT+CGG - chr6.2:58793745-58793764 None:intergenic 50.0%
! GTTGCTGCAATGGCATTGAG+GGG + chr6.2:58793755-58793774 MS.gene30842:CDS 50.0%
!! ACCCGGTGTATAGAGGTGTT+AGG + chr6.2:58793624-58793643 MS.gene30842:CDS 50.0%
!! CTCTGGTCTTAAAGCTTCGG+TGG - chr6.2:58793876-58793895 None:intergenic 50.0%
ATTTCGCGGACTCAGTGTGG+CGG + chr6.2:58793795-58793814 MS.gene30842:CDS 55.0%
TCCTCCCTGCTCTCTTCTTC+GGG - chr6.2:58793583-58793602 None:intergenic 55.0%
TGCAGCAACATCATGGGCTC+GGG - chr6.2:58793744-58793763 None:intergenic 55.0%
ACCCGAAGAAGAGAGCAGGG+AGG + chr6.2:58793579-58793598 MS.gene30842:CDS 60.0%
ACTCGCCACCCGGTGTATAG+AGG + chr6.2:58793617-58793636 MS.gene30842:CDS 60.0%
ATGGGCTCGGGCTGCCATAT+CGG - chr6.2:58793732-58793751 None:intergenic 60.0%
GGGAGCCCAACACGAAGACT+AGG + chr6.2:58793681-58793700 MS.gene30842:CDS 60.0%
! CGGGCTGCCATATCGGCTGT+TGG - chr6.2:58793725-58793744 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 58793473 58794120 58793473 ID=MS.gene30842
chr6.2 mRNA 58793473 58794120 58793473 ID=MS.gene30842.t1;Parent=MS.gene30842
chr6.2 exon 58793473 58794120 58793473 ID=MS.gene30842.t1.exon1;Parent=MS.gene30842.t1
chr6.2 CDS 58793473 58794120 58793473 ID=cds.MS.gene30842.t1;Parent=MS.gene30842.t1
Gene Sequence

>MS.gene30842

ATGTTTACTACTAACAACTCTTCCTATTCACACTCCATTTCCTCAAAAGCATCTTCTTCCTACTATAACTCATTACCGGATTCGGAGATACGATTAGCGGCTAGTAACCCGAAGAAGAGAGCAGGGAGGAAGATATTCAAGGAAACTCGCCACCCGGTGTATAGAGGTGTTAGGAAGAGGAACTTAGACAAATGGGTGTGTGAAATGAGGGAGCCCAACACGAAGACTAGGATATGGCTAGGAACTTTTCCAACAGCCGATATGGCAGCCCGAGCCCATGATGTTGCTGCAATGGCATTGAGGGGACGCTACGCCTGTCTCAATTTCGCGGACTCAGTGTGGCGGCTTCCTATTCCAGCAACTTCCTCGATAAAAGATATTCAAAAGGCAGCTACAAAAGCCACCGAAGCTTTAAGACCAGAGAATACTATAATGATTACCGATATTGAGACTGTTGTAGCTATCGTCGCCACAAAGGAGCTGAATATCTTTTGTGGGGAAGATGAGCATGAAATGTTAAATATGTCTGAGTTGTGGAGGAATATGGCCCTAATGTCCCCTACGCATAGCTTTGGGTATGATGATCATTATGAAGATATTCATGCACAAGATTTTCAAGATGATGAGGTATCACTCTGGAACTTCTAA

Protein sequence

>MS.gene30842.t1

MFTTNNSSYSHSISSKASSSYYNSLPDSEIRLAASNPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNTKTRIWLGTFPTADMAARAHDVAAMALRGRYACLNFADSVWRLPIPATSSIKDIQKAATKATEALRPENTIMITDIETVVAIVATKELNIFCGEDEHEMLNMSELWRNMALMSPTHSFGYDDHYEDIHAQDFQDDEVSLWNF