AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014699

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014699.t1 MTR_3g109300 99.289 422 3 0 1 422 250 671 0.0 847
MS.gene014699.t1 MTR_1g009010 93.079 419 29 0 3 421 2 420 0.0 768
MS.gene014699.t1 MTR_7g087530 24.403 377 265 8 14 379 33 400 4.69e-22 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014699.t1 AT1G29150 86.747 415 54 1 8 422 6 419 0.0 706
MS.gene014699.t1 AT1G29150 86.747 415 54 1 8 422 6 419 0.0 706
MS.gene014699.t1 AT2G26990 21.892 370 269 8 21 379 40 400 1.47e-16 81.6

Find 96 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCTTTGACTCTTCTTTC+TGG 0.076579 3.1:+87113918 MS.gene014699:CDS
GAAGATGTCTCAGATGATTT+TGG 0.221126 3.1:+87114571 MS.gene014699:CDS
TACACAACAACATATATTTC+AGG 0.264578 3.1:-87114232 None:intergenic
CTTAGGAATCAAGGAGAAAA+AGG 0.267105 3.1:-87113709 None:intergenic
AAGCTTTGACTCTTCTTTCT+GGG 0.325672 3.1:+87113919 MS.gene014699:CDS
CAAGAAGTTTGCTGGGACAT+TGG 0.347751 3.1:+87114595 MS.gene014699:CDS
GGGTGGAATTATTTCTTCTA+AGG 0.348906 3.1:+87114283 MS.gene014699:CDS
ACCTTCTCAGGCAAGAGAAC+AGG 0.350066 3.1:+87113649 MS.gene014699:CDS
TCTTTCATACGCAGAGCTTC+TGG 0.357829 3.1:-87113603 None:intergenic
GAAATGGTCTCTAAAGTTGC+AGG 0.361989 3.1:-87114674 None:intergenic
ATCCCTGTATGATACCCTTC+TGG 0.369495 3.1:+87114454 MS.gene014699:CDS
TGGTTGACAGTCTTTATGTT+AGG 0.381996 3.1:+87114711 MS.gene014699:CDS
CACTTTCCCAACATTGGAAA+TGG 0.391471 3.1:-87114690 None:intergenic
GAAATGTGTCTGTGAACAAT+TGG 0.398724 3.1:-87114431 None:intergenic
TATTCCACTCTGAAGATCTA+TGG 0.400897 3.1:-87114111 None:intergenic
CTGGGTTGGTCAAAGAGGTT+AGG 0.401504 3.1:+87113937 MS.gene014699:CDS
TTCCGCTCAACGTGAACAAT+TGG 0.403038 3.1:-87114551 None:intergenic
TAGAGACCATTTCCAATGTT+GGG 0.407846 3.1:+87114684 MS.gene014699:CDS
TTTGACTCTTCTTTCTGGGT+TGG 0.413470 3.1:+87113923 MS.gene014699:CDS
CAGGACTACAAGGCACAGTT+GGG 0.423474 3.1:+87114401 MS.gene014699:CDS
TTCTGGAGCAGAATCTTTGT+AGG 0.427259 3.1:+87114471 MS.gene014699:CDS
GGGTATATTGCATCAGTCTT+GGG 0.434505 3.1:-87114653 None:intergenic
CATTTCCAATGTTGGGAAAG+TGG 0.438184 3.1:+87114691 MS.gene014699:CDS
CCCTGTTCTCTTGCCTGAGA+AGG 0.446003 3.1:-87113650 None:intergenic
AACTGCTTTGCAGGACTACA+AGG 0.449311 3.1:+87114391 MS.gene014699:CDS
GAGAGCTCATGCCATGATCT+TGG 0.450538 3.1:-87114738 None:intergenic
CAAATCTTACTGACCTTCTC+AGG 0.450662 3.1:+87113637 MS.gene014699:CDS
AGGGTATATTGCATCAGTCT+TGG 0.452702 3.1:-87114654 None:intergenic
TTCAGGCTGAAAATAGCCTT+AGG 0.454754 3.1:-87114215 None:intergenic
GGAATTATTTCTTCTAAGGC+AGG 0.456178 3.1:+87114287 MS.gene014699:CDS
TCTATGGCCCCTTGTTGAGC+AGG 0.465189 3.1:-87114095 None:intergenic
GATTTCACTGTGTAAAGAAA+TGG 0.466235 3.1:+87113803 MS.gene014699:CDS
TGTTAGGTCTGCCAAGATCA+TGG 0.470208 3.1:+87114727 MS.gene014699:CDS
GGATTCAATTGCTCAGGCAT+TGG 0.471759 3.1:+87113515 MS.gene014699:CDS
ATCAAGTACACGATAAAGAA+TGG 0.473844 3.1:-87113565 None:intergenic
GCTCCAGAAGGGTATCATAC+AGG 0.475823 3.1:-87114457 None:intergenic
AAGGCAGGATTGCAATATGT+TGG 0.477736 3.1:+87114302 MS.gene014699:CDS
GCTTTCATCGCATCCAAGTC+AGG 0.487211 3.1:-87114326 None:intergenic
TTAGAGACCATTTCCAATGT+TGG 0.488579 3.1:+87114683 MS.gene014699:CDS
GTCAACCACTTTCCCAACAT+TGG 0.489301 3.1:-87114696 None:intergenic
GCAGGACTACAAGGCACAGT+TGG 0.489808 3.1:+87114400 MS.gene014699:CDS
TTCAATTGCTCAGGCATTGG+AGG 0.497862 3.1:+87113518 MS.gene014699:CDS
AGGCAGGATTGCAATATGTT+GGG 0.501095 3.1:+87114303 MS.gene014699:CDS
CAATGCTCTTGAAGACCCTA+AGG 0.511010 3.1:+87114199 MS.gene014699:CDS
GCAATATGTTGGGCCTGACT+TGG 0.511624 3.1:+87114313 MS.gene014699:CDS
CCTTCTCAGGCAAGAGAACA+GGG 0.514248 3.1:+87113650 MS.gene014699:CDS
TCAGGCTGAAAATAGCCTTA+GGG 0.519784 3.1:-87114214 None:intergenic
GCAATCTCAACTCTTGAGAA+TGG 0.520686 3.1:-87114503 None:intergenic
GCAATTGAATCCGTTGTGGC+AGG 0.520844 3.1:-87113504 None:intergenic
ATCGAATATAACGAGGCATC+CGG 0.522107 3.1:-87114627 None:intergenic
GACTCAGTTGCTAAAATACC+AGG 0.527380 3.1:+87113765 MS.gene014699:CDS
CACAACGGATTCAATTGCTC+AGG 0.533092 3.1:+87113509 MS.gene014699:CDS
AAGAGCATTGAAAGACTCAA+AGG 0.538169 3.1:-87114186 None:intergenic
AGCTCTGCGTATGAAAGAGC+AGG 0.542904 3.1:+87113608 MS.gene014699:CDS
CTCCAGAAGGGTATCATACA+GGG 0.544409 3.1:-87114456 None:intergenic
CAGCTGTTCTAGCAGCCGTG+AGG 0.548019 3.1:-87114052 None:intergenic
AGAGCTTCTGGTGAAGAAGA+TGG 0.548989 3.1:-87113591 None:intergenic
TATGTTGTTGTGTAAGATCA+TGG 0.550906 3.1:+87114241 MS.gene014699:CDS
AATACTTCATGCTGAGGAGA+AGG 0.551692 3.1:+87114130 MS.gene014699:CDS
TTCCAATTGTTCACGTTGAG+CGG 0.552851 3.1:+87114549 MS.gene014699:CDS
TCTTTCTGGGTTGGTCAAAG+AGG 0.554089 3.1:+87113932 MS.gene014699:CDS
AGCTGTTCTAGCAGCCGTGA+GGG 0.554968 3.1:-87114051 None:intergenic
TTTGCTGGGACATTGGATCA+AGG 0.555668 3.1:+87114602 MS.gene014699:CDS
AAATGTGTCTGTGAACAATT+GGG 0.557966 3.1:-87114430 None:intergenic
TATGTGCCTCCTGCTCAACA+AGG 0.559971 3.1:+87114086 MS.gene014699:CDS
ATCTGTAGATCAGATGTCCC+TGG 0.569702 3.1:-87113783 None:intergenic
TACAAAGATTCTGCTCCAGA+AGG 0.569886 3.1:-87114469 None:intergenic
AGAATGGATATCGCATCAGA+AGG 0.570735 3.1:-87113549 None:intergenic
GAATGGATATCGCATCAGAA+GGG 0.585707 3.1:-87113548 None:intergenic
GGGACATTGGATCAAGGTGC+CGG 0.586404 3.1:+87114608 MS.gene014699:CDS
GCAGCCTTCTCACTTCATTG+AGG 0.586407 3.1:+87113685 MS.gene014699:CDS
CTCATTAAGAAACCTTCCAA+AGG 0.587775 3.1:+87114019 MS.gene014699:CDS
CAGGCAAGAGAACAGGGGAG+AGG 0.594061 3.1:+87113656 MS.gene014699:CDS
ATCTTATCTTCCTGCCACAA+CGG 0.596364 3.1:+87113494 MS.gene014699:CDS
AAAGGCAAAAGCTGCCCTCA+CGG 0.605293 3.1:+87114037 MS.gene014699:CDS
AAGGTCAGTAAGATTTGTGA+TGG 0.606087 3.1:-87113631 None:intergenic
AGGGCCTCAATGAAGTGAGA+AGG 0.611750 3.1:-87113689 None:intergenic
ATGTGCCTCCTGCTCAACAA+GGG 0.612734 3.1:+87114087 MS.gene014699:CDS
ATGGCCCCTTGTTGAGCAGG+AGG 0.618931 3.1:-87114092 None:intergenic
ACAAAGATTCTGCTCCAGAA+GGG 0.620348 3.1:-87114468 None:intergenic
AAAACTGCAAAGATTGTAAG+GGG 0.631797 3.1:+87113735 MS.gene014699:CDS
GAGTGGAATACTTCATGCTG+AGG 0.636952 3.1:+87114124 MS.gene014699:CDS
AAATGGTCTCTAAAGTTGCA+GGG 0.639902 3.1:-87114673 None:intergenic
TGTGCCTCCTGCTCAACAAG+GGG 0.645095 3.1:+87114088 MS.gene014699:CDS
AGGAAGATAAGATGTAGACA+TGG 0.676910 3.1:-87113484 None:intergenic
AGGACTACAAGGCACAGTTG+GGG 0.686447 3.1:+87114402 MS.gene014699:CDS
GGACTACAAGGCACAGTTGG+GGG 0.689123 3.1:+87114403 MS.gene014699:CDS
CTGAGCAATTGAATCCGTTG+TGG 0.699339 3.1:-87113508 None:intergenic
TGTGTAAAGAAATGGTGCAG+TGG 0.703348 3.1:+87113811 MS.gene014699:CDS
AATCAAGCTGATGACGTGGG+TGG 0.707192 3.1:+87114266 MS.gene014699:CDS
CTTCTCAGGCAAGAGAACAG+GGG 0.711755 3.1:+87113651 MS.gene014699:CDS
ACTCAGTTGCTAAAATACCA+GGG 0.713806 3.1:+87113766 MS.gene014699:CDS
GGTGAATCAAGCTGATGACG+TGG 0.718460 3.1:+87114262 MS.gene014699:CDS
GGGGCCATAGATCTTCAGAG+TGG 0.726182 3.1:+87114107 MS.gene014699:CDS
GTGAATCAAGCTGATGACGT+GGG 0.744573 3.1:+87114263 MS.gene014699:CDS
TGGGATCATCGAATATAACG+AGG 0.757360 3.1:-87114634 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAAACTGCAAAGATTGTAA+GGG + chr3.1:87113734-87113753 MS.gene014699:CDS 25.0%
! AAGCAGTTTCAAAAAACTTA+AGG - chr3.1:87114379-87114398 None:intergenic 25.0%
! AGCAGTTTCAAAAAACTTAA+GGG - chr3.1:87114378-87114397 None:intergenic 25.0%
! TACACAACAACATATATTTC+AGG - chr3.1:87114235-87114254 None:intergenic 25.0%
AAAACTGCAAAGATTGTAAG+GGG + chr3.1:87113735-87113754 MS.gene014699:CDS 30.0%
AAATGTGTCTGTGAACAATT+GGG - chr3.1:87114433-87114452 None:intergenic 30.0%
ATCAAGTACACGATAAAGAA+TGG - chr3.1:87113568-87113587 None:intergenic 30.0%
CAAAAACTGCAAAGATTGTA+AGG + chr3.1:87113733-87113752 MS.gene014699:CDS 30.0%
GATTTCACTGTGTAAAGAAA+TGG + chr3.1:87113803-87113822 MS.gene014699:CDS 30.0%
TATGTTGTTGTGTAAGATCA+TGG + chr3.1:87114241-87114260 MS.gene014699:CDS 30.0%
TTAGGAATCAAGGAGAAAAA+GGG - chr3.1:87113711-87113730 None:intergenic 30.0%
AAGGTCAGTAAGATTTGTGA+TGG - chr3.1:87113634-87113653 None:intergenic 35.0%
ACTCAGTTGCTAAAATACCA+GGG + chr3.1:87113766-87113785 MS.gene014699:CDS 35.0%
CTCATTAAGAAACCTTCCAA+AGG + chr3.1:87114019-87114038 MS.gene014699:CDS 35.0%
CTTAGGAATCAAGGAGAAAA+AGG - chr3.1:87113712-87113731 None:intergenic 35.0%
GAAATGTGTCTGTGAACAAT+TGG - chr3.1:87114434-87114453 None:intergenic 35.0%
TAGAGACCATTTCCAATGTT+GGG + chr3.1:87114684-87114703 MS.gene014699:CDS 35.0%
TGGTTGACAGTCTTTATGTT+AGG + chr3.1:87114711-87114730 MS.gene014699:CDS 35.0%
TTAGAGACCATTTCCAATGT+TGG + chr3.1:87114683-87114702 MS.gene014699:CDS 35.0%
! AAGCTTTGACTCTTCTTTCT+GGG + chr3.1:87113919-87113938 MS.gene014699:CDS 35.0%
! AGTTTTTGCCTTAGGAATCA+AGG - chr3.1:87113721-87113740 None:intergenic 35.0%
! ATCTTTGCAGTTTTTGCCTT+AGG - chr3.1:87113729-87113748 None:intergenic 35.0%
! ATTTTGGACAAGAAGTTTGC+TGG + chr3.1:87114587-87114606 MS.gene014699:CDS 35.0%
! CTTTTTCTCCTTGATTCCTA+AGG + chr3.1:87113710-87113729 MS.gene014699:CDS 35.0%
! GAAGATGTCTCAGATGATTT+TGG + chr3.1:87114571-87114590 MS.gene014699:CDS 35.0%
! GGGTGGAATTATTTCTTCTA+AGG + chr3.1:87114283-87114302 MS.gene014699:CDS 35.0%
! TATTCCACTCTGAAGATCTA+TGG - chr3.1:87114114-87114133 None:intergenic 35.0%
!! AAATGGTCTCTAAAGTTGCA+GGG - chr3.1:87114676-87114695 None:intergenic 35.0%
!! AAGAGCATTGAAAGACTCAA+AGG - chr3.1:87114189-87114208 None:intergenic 35.0%
!! GGAATTATTTCTTCTAAGGC+AGG + chr3.1:87114287-87114306 MS.gene014699:CDS 35.0%
!! TTTTGGACAAGAAGTTTGCT+GGG + chr3.1:87114588-87114607 MS.gene014699:CDS 35.0%
!!! GTTTTTTGAAACTGCTTTGC+AGG + chr3.1:87114382-87114401 MS.gene014699:CDS 35.0%
AAGGCAGGATTGCAATATGT+TGG + chr3.1:87114302-87114321 MS.gene014699:CDS 40.0%
AATACTTCATGCTGAGGAGA+AGG + chr3.1:87114130-87114149 MS.gene014699:CDS 40.0%
ACAAAGATTCTGCTCCAGAA+GGG - chr3.1:87114471-87114490 None:intergenic 40.0%
AGAATGGATATCGCATCAGA+AGG - chr3.1:87113552-87113571 None:intergenic 40.0%
AGGCAGGATTGCAATATGTT+GGG + chr3.1:87114303-87114322 MS.gene014699:CDS 40.0%
AGGGTATATTGCATCAGTCT+TGG - chr3.1:87114657-87114676 None:intergenic 40.0%
ATCTTATCTTCCTGCCACAA+CGG + chr3.1:87113494-87113513 MS.gene014699:CDS 40.0%
CAAATCTTACTGACCTTCTC+AGG + chr3.1:87113637-87113656 MS.gene014699:CDS 40.0%
CACTTTCCCAACATTGGAAA+TGG - chr3.1:87114693-87114712 None:intergenic 40.0%
CATTTCCAATGTTGGGAAAG+TGG + chr3.1:87114691-87114710 MS.gene014699:CDS 40.0%
GAATGGATATCGCATCAGAA+GGG - chr3.1:87113551-87113570 None:intergenic 40.0%
GACTCAGTTGCTAAAATACC+AGG + chr3.1:87113765-87113784 MS.gene014699:CDS 40.0%
GCAATCTCAACTCTTGAGAA+TGG - chr3.1:87114506-87114525 None:intergenic 40.0%
GGGTATATTGCATCAGTCTT+GGG - chr3.1:87114656-87114675 None:intergenic 40.0%
TACAAAGATTCTGCTCCAGA+AGG - chr3.1:87114472-87114491 None:intergenic 40.0%
TGGGATCATCGAATATAACG+AGG - chr3.1:87114637-87114656 None:intergenic 40.0%
TGTGTAAAGAAATGGTGCAG+TGG + chr3.1:87113811-87113830 MS.gene014699:CDS 40.0%
TTCAGGCTGAAAATAGCCTT+AGG - chr3.1:87114218-87114237 None:intergenic 40.0%
TTCCAATTGTTCACGTTGAG+CGG + chr3.1:87114549-87114568 MS.gene014699:CDS 40.0%
TTTGACTCTTCTTTCTGGGT+TGG + chr3.1:87113923-87113942 MS.gene014699:CDS 40.0%
! AGCGCTTTTGATGGAAACTA+AGG + chr3.1:87113887-87113906 MS.gene014699:CDS 40.0%
! ATCGAATATAACGAGGCATC+CGG - chr3.1:87114630-87114649 None:intergenic 40.0%
! GAAGCTTTGACTCTTCTTTC+TGG + chr3.1:87113918-87113937 MS.gene014699:CDS 40.0%
! TCAGGCTGAAAATAGCCTTA+GGG - chr3.1:87114217-87114236 None:intergenic 40.0%
!! CTGAAAAGCGTACTTTTCTG+AGG + chr3.1:87113841-87113860 MS.gene014699:CDS 40.0%
!! GAAATGGTCTCTAAAGTTGC+AGG - chr3.1:87114677-87114696 None:intergenic 40.0%
!! TTCTGGAGCAGAATCTTTGT+AGG + chr3.1:87114471-87114490 MS.gene014699:CDS 40.0%
!!! TTTTCTGAGGCAACGAATTG+AGG + chr3.1:87113854-87113873 MS.gene014699:CDS 40.0%
AACTGCTTTGCAGGACTACA+AGG + chr3.1:87114391-87114410 MS.gene014699:CDS 45.0%
AGAGCTTCTGGTGAAGAAGA+TGG - chr3.1:87113594-87113613 None:intergenic 45.0%
ATCCCTGTATGATACCCTTC+TGG + chr3.1:87114454-87114473 MS.gene014699:CDS 45.0%
ATCTGTAGATCAGATGTCCC+TGG - chr3.1:87113786-87113805 None:intergenic 45.0%
CAATGCTCTTGAAGACCCTA+AGG + chr3.1:87114199-87114218 MS.gene014699:CDS 45.0%
CTGAGCAATTGAATCCGTTG+TGG - chr3.1:87113511-87113530 None:intergenic 45.0%
GAGTGGAATACTTCATGCTG+AGG + chr3.1:87114124-87114143 MS.gene014699:CDS 45.0%
GGATTCAATTGCTCAGGCAT+TGG + chr3.1:87113515-87113534 MS.gene014699:CDS 45.0%
GTCAACCACTTTCCCAACAT+TGG - chr3.1:87114699-87114718 None:intergenic 45.0%
TCTTTCATACGCAGAGCTTC+TGG - chr3.1:87113606-87113625 None:intergenic 45.0%
TGTTAGGTCTGCCAAGATCA+TGG + chr3.1:87114727-87114746 MS.gene014699:CDS 45.0%
TTCCGCTCAACGTGAACAAT+TGG - chr3.1:87114554-87114573 None:intergenic 45.0%
TTTGCTGGGACATTGGATCA+AGG + chr3.1:87114602-87114621 MS.gene014699:CDS 45.0%
! AAGACTTGCAGCGCTTTTGA+TGG + chr3.1:87113878-87113897 MS.gene014699:CDS 45.0%
! CACAACGGATTCAATTGCTC+AGG + chr3.1:87113509-87113528 MS.gene014699:CDS 45.0%
! GTGAATCAAGCTGATGACGT+GGG + chr3.1:87114263-87114282 MS.gene014699:CDS 45.0%
!! CAAGAAGTTTGCTGGGACAT+TGG + chr3.1:87114595-87114614 MS.gene014699:CDS 45.0%
!! CTCCAGAAGGGTATCATACA+GGG - chr3.1:87114459-87114478 None:intergenic 45.0%
!! TCTTTCTGGGTTGGTCAAAG+AGG + chr3.1:87113932-87113951 MS.gene014699:CDS 45.0%
!! TTCAATTGCTCAGGCATTGG+AGG + chr3.1:87113518-87113537 MS.gene014699:CDS 45.0%
AAAGGCAAAAGCTGCCCTCA+CGG + chr3.1:87114037-87114056 MS.gene014699:CDS 50.0%
ACCTTCTCAGGCAAGAGAAC+AGG + chr3.1:87113649-87113668 MS.gene014699:CDS 50.0%
AGCTCTGCGTATGAAAGAGC+AGG + chr3.1:87113608-87113627 MS.gene014699:CDS 50.0%
AGGACTACAAGGCACAGTTG+GGG + chr3.1:87114402-87114421 MS.gene014699:CDS 50.0%
AGGGCCTCAATGAAGTGAGA+AGG - chr3.1:87113692-87113711 None:intergenic 50.0%
ATGTGCCTCCTGCTCAACAA+GGG + chr3.1:87114087-87114106 MS.gene014699:CDS 50.0%
CAGGACTACAAGGCACAGTT+GGG + chr3.1:87114401-87114420 MS.gene014699:CDS 50.0%
CCTTCTCAGGCAAGAGAACA+GGG + chr3.1:87113650-87113669 MS.gene014699:CDS 50.0%
CTTCTCAGGCAAGAGAACAG+GGG + chr3.1:87113651-87113670 MS.gene014699:CDS 50.0%
GCAATATGTTGGGCCTGACT+TGG + chr3.1:87114313-87114332 MS.gene014699:CDS 50.0%
GCAATTGAATCCGTTGTGGC+AGG - chr3.1:87113507-87113526 None:intergenic 50.0%
GCAGCCTTCTCACTTCATTG+AGG + chr3.1:87113685-87113704 MS.gene014699:CDS 50.0%
GCTTTCATCGCATCCAAGTC+AGG - chr3.1:87114329-87114348 None:intergenic 50.0%
TATGTGCCTCCTGCTCAACA+AGG + chr3.1:87114086-87114105 MS.gene014699:CDS 50.0%
! AATCAAGCTGATGACGTGGG+TGG + chr3.1:87114266-87114285 MS.gene014699:CDS 50.0%
! GGTGAATCAAGCTGATGACG+TGG + chr3.1:87114262-87114281 MS.gene014699:CDS 50.0%
!! CTGGGTTGGTCAAAGAGGTT+AGG + chr3.1:87113937-87113956 MS.gene014699:CDS 50.0%
!! GCTCCAGAAGGGTATCATAC+AGG - chr3.1:87114460-87114479 None:intergenic 50.0%
AGCTGTTCTAGCAGCCGTGA+GGG - chr3.1:87114054-87114073 None:intergenic 55.0%
CCCTGTTCTCTTGCCTGAGA+AGG - chr3.1:87113653-87113672 None:intergenic 55.0%
GCAGGACTACAAGGCACAGT+TGG + chr3.1:87114400-87114419 MS.gene014699:CDS 55.0%
GGACTACAAGGCACAGTTGG+GGG + chr3.1:87114403-87114422 MS.gene014699:CDS 55.0%
GGGACATTGGATCAAGGTGC+CGG + chr3.1:87114608-87114627 MS.gene014699:CDS 55.0%
GGGGCCATAGATCTTCAGAG+TGG + chr3.1:87114107-87114126 MS.gene014699:CDS 55.0%
TCTATGGCCCCTTGTTGAGC+AGG - chr3.1:87114098-87114117 None:intergenic 55.0%
TGTGCCTCCTGCTCAACAAG+GGG + chr3.1:87114088-87114107 MS.gene014699:CDS 55.0%
! GGGCAGCTTTTGCCTTTGGA+AGG - chr3.1:87114034-87114053 None:intergenic 55.0%
! GTGAGGGCAGCTTTTGCCTT+TGG - chr3.1:87114038-87114057 None:intergenic 55.0%
ATGGCCCCTTGTTGAGCAGG+AGG - chr3.1:87114095-87114114 None:intergenic 60.0%
CAGCTGTTCTAGCAGCCGTG+AGG - chr3.1:87114055-87114074 None:intergenic 60.0%
CAGGCAAGAGAACAGGGGAG+AGG + chr3.1:87113656-87113675 MS.gene014699:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 87113486 87114754 87113486 ID=MS.gene014699
chr3.1 mRNA 87113486 87114754 87113486 ID=MS.gene014699.t1;Parent=MS.gene014699
chr3.1 exon 87113486 87114754 87113486 ID=MS.gene014699.t1.exon1;Parent=MS.gene014699.t1
chr3.1 CDS 87113486 87114754 87113486 ID=cds.MS.gene014699.t1;Parent=MS.gene014699.t1
Gene Sequence

>MS.gene014699

ATGTCTACATCTTATCTTCCTGCCACAACGGATTCAATTGCTCAGGCATTGGAGGCTAAAGACCCTTCTGATGCGATATCCATTCTTTATCGTGTACTTGATGATCCATCTTCTTCACCAGAAGCTCTGCGTATGAAAGAGCAGGCCATCACAAATCTTACTGACCTTCTCAGGCAAGAGAACAGGGGAGAGGATCTGCGCAGCCTTCTCACTTCATTGAGGCCCTTTTTCTCCTTGATTCCTAAGGCAAAAACTGCAAAGATTGTAAGGGGAATAATTGACTCAGTTGCTAAAATACCAGGGACATCTGATCTACAGATTTCACTGTGTAAAGAAATGGTGCAGTGGACTCGTGCTGAAAAGCGTACTTTTCTGAGGCAACGAATTGAGGCAAGACTTGCAGCGCTTTTGATGGAAACTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGGTTGGTCAAAGAGGTTAGGAGATTAGATGACAAACTTCTTCTTGTAGACATTGACTTGCTCGAAAGCAAACTGCACTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCCCTCACGGCTGCTAGAACAGCTGCAAATGCTATTTATGTGCCTCCTGCTCAACAAGGGGCCATAGATCTTCAGAGTGGAATACTTCATGCTGAGGAGAAGGACTACAAAACTGCATACAGCTATTTCTTTGAAGCCTTTGAGTCTTTCAATGCTCTTGAAGACCCTAAGGCTATTTTCAGCCTGAAATATATGTTGTTGTGTAAGATCATGGTGAATCAAGCTGATGACGTGGGTGGAATTATTTCTTCTAAGGCAGGATTGCAATATGTTGGGCCTGACTTGGATGCGATGAAAGCTGTTGCTGATGCTTATTCTAAGCGATCCCTTAAGTTTTTTGAAACTGCTTTGCAGGACTACAAGGCACAGTTGGGGGAAGACCCAATTGTTCACAGACACATTTCATCCCTGTATGATACCCTTCTGGAGCAGAATCTTTGTAGGTTGATTGAGCCATTCTCAAGAGTTGAGATTGCACATATTGCTGAGCTTATCGAGCTTCCAATTGTTCACGTTGAGCGGAAGATGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCCGGATGCCTCGTTATATTCGATGATCCCAAGACTGATGCAATATACCCTGCAACTTTAGAGACCATTTCCAATGTTGGGAAAGTGGTTGACAGTCTTTATGTTAGGTCTGCCAAGATCATGGCATGA
Protein sequence

>MS.gene014699.t1

MSTSYLPATTDSIAQALEAKDPSDAISILYRVLDDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLTSLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQISLCKEMVQWTRAEKRTFLRQRIEARLAALLMETKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAIFSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAYSKRSLKFFETALQDYKAQLGEDPIVHRHISSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIVHVERKMSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA