Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011376.t1 | XP_003608889.1 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.70E-190 | 675.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011376.t1 | Q93Y35 | 76.0 | 387 | 93 | 0 | 1 | 387 | 1 | 387 | 1.2e-160 | 567.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011376.t1 | G7JMM6 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.3e-190 | 675.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011376.t1 | MTR_4g104080 | 99.483 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 0.0 | 783 |
| MS.gene011376.t1 | MTR_8g046560 | 84.342 | 281 | 25 | 4 | 86 | 366 | 260 | 521 | 2.15e-156 | 451 |
| MS.gene011376.t1 | MTR_8g464820 | 95.673 | 208 | 8 | 1 | 96 | 303 | 160 | 366 | 2.77e-141 | 406 |
| MS.gene011376.t1 | MTR_7g076160 | 24.291 | 247 | 180 | 3 | 127 | 371 | 173 | 414 | 5.65e-19 | 88.6 |
| MS.gene011376.t1 | MTR_8g432630 | 23.481 | 362 | 254 | 11 | 23 | 371 | 65 | 416 | 1.54e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011376.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
| MS.gene011376.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
| MS.gene011376.t1 | AT3G61140 | 25.100 | 251 | 180 | 4 | 124 | 372 | 169 | 413 | 5.59e-18 | 85.5 |
Find 78 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAGTCTCCTTGCTTAA+TGG | 0.172394 | 8.4:-21749002 | None:intergenic |
| TTTAGCTTTGTCAATGCTTT+TGG | 0.209748 | 8.4:-21747919 | None:intergenic |
| CGATCACACGAGACAGTTTC+TGG | 0.218957 | 8.4:-21749036 | None:intergenic |
| ACATTGCAGCTTGGTTTCTT+TGG | 0.250558 | 8.4:+21747876 | MS.gene011376:CDS |
| CCTAGTTGCTGATTCCGTTT+TGG | 0.319218 | 8.4:+21745834 | MS.gene011376:CDS |
| TGCTTGGTAAAGAGCATTCT+TGG | 0.319346 | 8.4:-21748978 | None:intergenic |
| GTAAAATATAAAGGTGTCAT+AGG | 0.319394 | 8.4:-21748183 | None:intergenic |
| GAAGGCGGCCACATTGTTCT+TGG | 0.328664 | 8.4:+21748124 | MS.gene011376:CDS |
| GGATATGGATCGTGTCCTTT+TGG | 0.338072 | 8.4:+21745855 | MS.gene011376:CDS |
| GCAACTAGGGTTTCGTATAA+AGG | 0.342274 | 8.4:-21745820 | None:intergenic |
| AAAGCATTGACAAAGCTAAA+AGG | 0.352604 | 8.4:+21747922 | MS.gene011376:CDS |
| TAAAGAGCATTCTTGGCATC+AGG | 0.380008 | 8.4:-21748971 | None:intergenic |
| AAGTCTTTCTTCTCAGCATT+TGG | 0.381841 | 8.4:+21748452 | MS.gene011376:CDS |
| CTTGAACATCTTGTTGTTTG+AGG | 0.383548 | 8.4:-21745655 | None:intergenic |
| CTGCCCAACTGCAACAGTCT+TGG | 0.384938 | 8.4:-21747832 | None:intergenic |
| CAAAACGGTGTAAAATATAA+AGG | 0.388515 | 8.4:-21748192 | None:intergenic |
| AAGGAGACTTCTTGTTGAAC+AGG | 0.394711 | 8.4:+21749011 | MS.gene011376:CDS |
| TGTAAGATTGATAAAGTTGC+AGG | 0.396057 | 8.4:+21748929 | MS.gene011376:CDS |
| GAAGCCATGGCAAAAGCGTT+TGG | 0.405490 | 8.4:+21748745 | MS.gene011376:CDS |
| TCAATCACTGTCAAGATCTC+AGG | 0.407014 | 8.4:-21748377 | None:intergenic |
| GTCTCGTGTGATCGATCTTT+AGG | 0.409640 | 8.4:+21749045 | MS.gene011376:CDS |
| CTTGTATTGACAACCATATA+AGG | 0.412125 | 8.4:-21748432 | None:intergenic |
| GCTATTTGCATCCACACTTC+CGG | 0.415118 | 8.4:+21748653 | MS.gene011376:CDS |
| CTCCTTGCTTAATGGTTGCT+TGG | 0.422700 | 8.4:-21748994 | None:intergenic |
| CAGAGTTTCCTTAAAACAAA+AGG | 0.442207 | 8.4:+21748235 | MS.gene011376:CDS |
| CCAACTTAATTTGCTCCGTC+AGG | 0.445020 | 8.4:-21748627 | None:intergenic |
| CAACTAGGGTTTCGTATAAA+GGG | 0.448981 | 8.4:-21745819 | None:intergenic |
| CCAAAACGGAATCAGCAACT+AGG | 0.455755 | 8.4:-21745834 | None:intergenic |
| GCAGCTTGGTTTCTTTGGCA+TGG | 0.461721 | 8.4:+21747881 | MS.gene011376:CDS |
| TGTTTGAAGAAGGTGGTGAC+TGG | 0.465631 | 8.4:+21748039 | MS.gene011376:CDS |
| TGTTATTATGCTGGTCAAAA+CGG | 0.481534 | 8.4:-21748207 | None:intergenic |
| AAGAAGGTGGTGACTGGGAA+AGG | 0.487909 | 8.4:+21748045 | MS.gene011376:CDS |
| TGAAGTTCGTGAGGCTCACT+TGG | 0.496675 | 8.4:+21747657 | MS.gene011376:CDS |
| TTTGAGGAGGAAAAGCTTGT+CGG | 0.496982 | 8.4:-21745639 | None:intergenic |
| TACATACCTTGTCCCCAATC+CGG | 0.497684 | 8.4:-21747699 | None:intergenic |
| TTTCATCCGGATTGGGGACA+AGG | 0.498726 | 8.4:+21747693 | MS.gene011376:CDS |
| TATGACAGCTTGTTTGAAGA+AGG | 0.509351 | 8.4:+21748029 | MS.gene011376:intron |
| GTATTCTATACATTGCAGCT+TGG | 0.510078 | 8.4:+21747867 | MS.gene011376:CDS |
| TGTTGCAGTTGGGCAGAAGA+TGG | 0.511519 | 8.4:+21747839 | MS.gene011376:CDS |
| TTTGACCAGCATAATAACAT+TGG | 0.511922 | 8.4:+21748211 | MS.gene011376:CDS |
| TTCAATTTCGTCAAGGAACA+TGG | 0.512182 | 8.4:+21745710 | MS.gene011376:CDS |
| TGATCTCTCTCATGTAATAC+CGG | 0.514625 | 8.4:-21748672 | None:intergenic |
| TCTGTCCAATGTTATTATGC+TGG | 0.519046 | 8.4:-21748216 | None:intergenic |
| GTGACTGGGAAAGGAAGAAT+AGG | 0.520244 | 8.4:+21748054 | MS.gene011376:CDS |
| TGTTATCTTGAGATGCTCCA+AGG | 0.535770 | 8.4:-21747805 | None:intergenic |
| AAACCAAGACTGTTGCAGTT+GGG | 0.539841 | 8.4:+21747829 | MS.gene011376:CDS |
| GCTGATGCCGAGGAAAACTT+AGG | 0.544982 | 8.4:+21747628 | MS.gene011376:CDS |
| TAAAATATAAAGGTGTCATA+GGG | 0.545376 | 8.4:-21748182 | None:intergenic |
| GACACGATCCATATCCAAAA+CGG | 0.546950 | 8.4:-21745848 | None:intergenic |
| GAAACCAAGACTGTTGCAGT+TGG | 0.547733 | 8.4:+21747828 | MS.gene011376:CDS |
| CCTGACGGAGCAAATTAAGT+TGG | 0.551415 | 8.4:+21748627 | MS.gene011376:CDS |
| TAGCACGCATGGAGTCCAAA+AGG | 0.551715 | 8.4:-21745870 | None:intergenic |
| ATAGGTAGTAAAGGTTGAGA+TGG | 0.554018 | 8.4:-21748150 | None:intergenic |
| TATGCACCAGGAGAAAGCCT+TGG | 0.557453 | 8.4:+21747788 | MS.gene011376:intron |
| CAAAACGGAATCAGCAACTA+GGG | 0.569243 | 8.4:-21745833 | None:intergenic |
| GAGTGTGACAATTGAAGCCA+TGG | 0.570854 | 8.4:+21748732 | MS.gene011376:CDS |
| ATCGCGTCAATGGCAAATGA+AGG | 0.573429 | 8.4:+21745584 | None:intergenic |
| CTCATGTAATACCGGAAGTG+TGG | 0.574056 | 8.4:-21748664 | None:intergenic |
| ATTCATTTCAGCTGGCCTGA+CGG | 0.578789 | 8.4:+21748612 | MS.gene011376:intron |
| AATAGGCTGAAAGTGTATGA+AGG | 0.580095 | 8.4:+21748071 | MS.gene011376:CDS |
| AAAGAGCATTCTTGGCATCA+GGG | 0.589008 | 8.4:-21748970 | None:intergenic |
| GAACATCTTGTTGTTTGAGG+AGG | 0.589500 | 8.4:-21745652 | None:intergenic |
| TACCAAGCAACCATTAAGCA+AGG | 0.592283 | 8.4:+21748992 | MS.gene011376:CDS |
| GTTTGAAGAAGGTGGTGACT+GGG | 0.592873 | 8.4:+21748040 | MS.gene011376:CDS |
| TTCGAGTGGACATGCAGTAG+AGG | 0.594533 | 8.4:-21748094 | None:intergenic |
| GCTGCAATGTATAGAATACC+AGG | 0.602890 | 8.4:-21747863 | None:intergenic |
| GGAGGAAAAGCTTGTCGGCG+AGG | 0.605693 | 8.4:-21745634 | None:intergenic |
| CACTCGAAATTTCGAGAAGG+CGG | 0.611108 | 8.4:+21748109 | MS.gene011376:CDS |
| CGCCTTCTCGAAATTTCGAG+TGG | 0.620270 | 8.4:-21748108 | None:intergenic |
| TTGTCGGCGAGGACAAGTTG+TGG | 0.627071 | 8.4:-21745623 | None:intergenic |
| AAAAGCGTTTGGAGTATCTG+TGG | 0.655763 | 8.4:+21748756 | MS.gene011376:CDS |
| GGAAGTGTGGATGCAAATAG+CGG | 0.661860 | 8.4:-21748651 | None:intergenic |
| AGGTGAGAGTGAAGTTCGTG+AGG | 0.662611 | 8.4:+21747648 | MS.gene011376:CDS |
| GTCCACTCGAAATTTCGAGA+AGG | 0.663292 | 8.4:+21748106 | MS.gene011376:CDS |
| AGTTGGGCAGAAGATGGACC+TGG | 0.674047 | 8.4:+21747845 | MS.gene011376:CDS |
| GACAGCTTGTTTGAAGAAGG+TGG | 0.675197 | 8.4:+21748032 | MS.gene011376:intron |
| GAGCATTCTTGGCATCAGGG+CGG | 0.729040 | 8.4:-21748967 | None:intergenic |
| GATGGAATCCAAGAACAATG+TGG | 0.760047 | 8.4:-21748132 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATAAATACATATCTTAA+TGG | + | chr8.4:21746945-21746964 | MS.gene011376:intron | 15.0% |
| !!! | TATAATTTTCTGTTAAGAAT+GGG | + | chr8.4:21747986-21748005 | MS.gene011376:intron | 15.0% |
| !! | AAAATCCAAAATTCACAATT+GGG | - | chr8.4:21745963-21745982 | None:intergenic | 20.0% |
| !! | ATATATCCTAGAAAGATTAA+TGG | - | chr8.4:21747359-21747378 | None:intergenic | 20.0% |
| !! | ATTACATATATTTGTTTCCA+GGG | + | chr8.4:21748871-21748890 | MS.gene011376:intron | 20.0% |
| !! | CAATATGTAAAAATAAACTC+TGG | - | chr8.4:21746571-21746590 | None:intergenic | 20.0% |
| !! | TATATCCTAGAAAGATTAAT+GGG | - | chr8.4:21747358-21747377 | None:intergenic | 20.0% |
| !! | TGAAAAACAAAAGCAAATTA+GGG | - | chr8.4:21745789-21745808 | None:intergenic | 20.0% |
| !! | TGAAGAAAATTTGTATAGTA+GGG | + | chr8.4:21746001-21746020 | MS.gene011376:intron | 20.0% |
| !! | TTAACAGAAAATTATAGCAA+AGG | - | chr8.4:21747982-21748001 | None:intergenic | 20.0% |
| !! | TTGAAGAAAATTTGTATAGT+AGG | + | chr8.4:21746000-21746019 | MS.gene011376:intron | 20.0% |
| !! | TTGAATTGTACTAATGTATT+TGG | + | chr8.4:21746073-21746092 | MS.gene011376:intron | 20.0% |
| !!! | ACAACTTATTCATCATTTTT+AGG | - | chr8.4:21746821-21746840 | None:intergenic | 20.0% |
| !!! | CTATAATTTTCTGTTAAGAA+TGG | + | chr8.4:21747985-21748004 | MS.gene011376:intron | 20.0% |
| !!! | TAAAATATAAAGGTGTCATA+GGG | - | chr8.4:21748185-21748204 | None:intergenic | 20.0% |
| ! | AAAAAGTTCATAGGTAGTAA+AGG | - | chr8.4:21748162-21748181 | None:intergenic | 25.0% |
| ! | AAATCCAAAATTCACAATTG+GGG | - | chr8.4:21745962-21745981 | None:intergenic | 25.0% |
| ! | AGAAAAGATAAATGGTGTAA+AGG | - | chr8.4:21748286-21748305 | None:intergenic | 25.0% |
| ! | ATGTAGAGTGAAGAAAATTA+GGG | - | chr8.4:21745763-21745782 | None:intergenic | 25.0% |
| ! | CAAAAACCAGTAAAACATTT+AGG | - | chr8.4:21746116-21746135 | None:intergenic | 25.0% |
| ! | CAAAACGGTGTAAAATATAA+AGG | - | chr8.4:21748195-21748214 | None:intergenic | 25.0% |
| ! | CAAAATCCAAAATTCACAAT+TGG | - | chr8.4:21745964-21745983 | None:intergenic | 25.0% |
| ! | CATTACATATATTTGTTTCC+AGG | + | chr8.4:21748870-21748889 | MS.gene011376:intron | 25.0% |
| ! | CGGTTAAAAGAAAAGATAAA+TGG | - | chr8.4:21748294-21748313 | None:intergenic | 25.0% |
| ! | GTGAAAAACAAAAGCAAATT+AGG | - | chr8.4:21745790-21745809 | None:intergenic | 25.0% |
| ! | TATAGAACTAAGCTTATAGT+TGG | + | chr8.4:21746873-21746892 | MS.gene011376:intron | 25.0% |
| ! | TATGTAGAGTGAAGAAAATT+AGG | - | chr8.4:21745764-21745783 | None:intergenic | 25.0% |
| ! | TGATTAGATTACAATGTTGT+GGG | + | chr8.4:21748839-21748858 | MS.gene011376:intron | 25.0% |
| ! | TTAAACAACCAAGAAAGAAA+AGG | + | chr8.4:21746921-21746940 | MS.gene011376:intron | 25.0% |
| ! | TTGATTAGATTACAATGTTG+TGG | + | chr8.4:21748838-21748857 | MS.gene011376:intron | 25.0% |
| ! | TTTACATGATGCTATATCAT+TGG | - | chr8.4:21746973-21746992 | None:intergenic | 25.0% |
| !! | AAATAATAGTTTGTATCTCG+AGG | - | chr8.4:21747543-21747562 | None:intergenic | 25.0% |
| !! | AATTCTAGAGATTCTTGAAT+AGG | - | chr8.4:21746332-21746351 | None:intergenic | 25.0% |
| !! | ATTCTAGAGATTCTTGAATA+GGG | - | chr8.4:21746331-21746350 | None:intergenic | 25.0% |
| !! | TCATATGAATGTCTCATTTT+AGG | + | chr8.4:21747602-21747621 | MS.gene011376:intron | 25.0% |
| !! | TTATTGATCCTTTTCTTTCT+TGG | - | chr8.4:21746932-21746951 | None:intergenic | 25.0% |
| !! | TTTGTTCCTAAATGTTTTAC+TGG | + | chr8.4:21746107-21746126 | MS.gene011376:intron | 25.0% |
| !!! | ACTATAAGCTTAGTTCTATA+TGG | - | chr8.4:21746873-21746892 | None:intergenic | 25.0% |
| !!! | ATTTTGAAATTCATTTCAGC+TGG | + | chr8.4:21748604-21748623 | MS.gene011376:intron | 25.0% |
| !!! | CAAAATCCTTATTTTTCATC+CGG | + | chr8.4:21747680-21747699 | MS.gene011376:CDS | 25.0% |
| !!! | GTAAAATATAAAGGTGTCAT+AGG | - | chr8.4:21748186-21748205 | None:intergenic | 25.0% |
| !!! | TAGAAGTACCTTTTGTTTTA+AGG | - | chr8.4:21748246-21748265 | None:intergenic | 25.0% |
| !!! | TATTTTTACATATTGTGACC+TGG | + | chr8.4:21746576-21746595 | MS.gene011376:intron | 25.0% |
| AAACGAAAAACCAAGTGATT+TGG | - | chr8.4:21748810-21748829 | None:intergenic | 30.0% | |
| AAATCGACATATGATCTGAA+TGG | - | chr8.4:21746422-21746441 | None:intergenic | 30.0% | |
| AACGAAAAACCAAGTGATTT+GGG | - | chr8.4:21748809-21748828 | None:intergenic | 30.0% | |
| AAGTACAAAACCTAGAATAC+TGG | + | chr8.4:21747451-21747470 | MS.gene011376:intron | 30.0% | |
| ACCAAGAAATAACAGAACAA+CGG | - | chr8.4:21748314-21748333 | None:intergenic | 30.0% | |
| AGTACAAAACCTAGAATACT+GGG | + | chr8.4:21747452-21747471 | MS.gene011376:intron | 30.0% | |
| AGTATAATGAGTCTTTGTTG+GGG | + | chr8.4:21746464-21746483 | MS.gene011376:intron | 30.0% | |
| ATAGGCTAAATTTCATCCAT+CGG | - | chr8.4:21747315-21747334 | None:intergenic | 30.0% | |
| CAGAGTTTCCTTAAAACAAA+AGG | + | chr8.4:21748235-21748254 | MS.gene011376:CDS | 30.0% | |
| CTTGTAAGATTCCAAAAACT+GGG | - | chr8.4:21748713-21748732 | None:intergenic | 30.0% | |
| GAACATAGAAGCAAAAAGAT+AGG | - | chr8.4:21748571-21748590 | None:intergenic | 30.0% | |
| GAGTATAATGAGTCTTTGTT+GGG | + | chr8.4:21746463-21746482 | MS.gene011376:intron | 30.0% | |
| GTGAAGAAAATTAGGGTTTA+CGG | - | chr8.4:21745756-21745775 | None:intergenic | 30.0% | |
| TATGAACTATCGTTAGTACA+AGG | - | chr8.4:21747587-21747606 | None:intergenic | 30.0% | |
| TCTTACCCATTAATCTTTCT+AGG | + | chr8.4:21747350-21747369 | MS.gene011376:intron | 30.0% | |
| TCTTGTAAGATTCCAAAAAC+TGG | - | chr8.4:21748714-21748733 | None:intergenic | 30.0% | |
| TGAGTATAATGAGTCTTTGT+TGG | + | chr8.4:21746462-21746481 | MS.gene011376:intron | 30.0% | |
| TGCAATTAATATGACACATC+TGG | - | chr8.4:21747502-21747521 | None:intergenic | 30.0% | |
| TGTAAGATTGATAAAGTTGC+AGG | + | chr8.4:21748929-21748948 | MS.gene011376:CDS | 30.0% | |
| TGTTATTATGCTGGTCAAAA+CGG | - | chr8.4:21748210-21748229 | None:intergenic | 30.0% | |
| TTTGACCAGCATAATAACAT+TGG | + | chr8.4:21748211-21748230 | MS.gene011376:CDS | 30.0% | |
| ! | ACTGTTTCTTTCCTTGATTA+TGG | - | chr8.4:21746766-21746785 | None:intergenic | 30.0% |
| ! | AGATGTTTTCAATTTCGTCA+AGG | + | chr8.4:21745703-21745722 | MS.gene011376:CDS | 30.0% |
| ! | ATCAAGGAAAGAAACAGTTT+TGG | + | chr8.4:21746768-21746787 | MS.gene011376:intron | 30.0% |
| ! | CAAAACTTTCATTTTCACTC+TGG | + | chr8.4:21747109-21747128 | MS.gene011376:intron | 30.0% |
| ! | CAGAGTGAAAATGAAAGTTT+TGG | - | chr8.4:21747111-21747130 | None:intergenic | 30.0% |
| ! | CTTGTATTGACAACCATATA+AGG | - | chr8.4:21748435-21748454 | None:intergenic | 30.0% |
| ! | TCCACATCTTAAAGAGTTTT+TGG | + | chr8.4:21748406-21748425 | MS.gene011376:CDS | 30.0% |
| ! | TTAACCCCAATTGTGAATTT+TGG | + | chr8.4:21745955-21745974 | MS.gene011376:intron | 30.0% |
| ! | TTAACTGACTAATTTGCATC+AGG | + | chr8.4:21748343-21748362 | MS.gene011376:intron | 30.0% |
| ! | TTTTGGATTTTGAATGCACT+AGG | + | chr8.4:21745972-21745991 | MS.gene011376:intron | 30.0% |
| !! | AAAGCATTGACAAAGCTAAA+AGG | + | chr8.4:21747922-21747941 | MS.gene011376:CDS | 30.0% |
| !! | CTTAGTTCTATATGGATGTA+TGG | - | chr8.4:21746865-21746884 | None:intergenic | 30.0% |
| !! | TAGAATCACTTTTGAAGATG+TGG | - | chr8.4:21747265-21747284 | None:intergenic | 30.0% |
| !! | TCCAAAAACTCTTTAAGATG+TGG | - | chr8.4:21748410-21748429 | None:intergenic | 30.0% |
| !! | TGTCATTTATTCCCAGTTTT+TGG | + | chr8.4:21748699-21748718 | MS.gene011376:CDS | 30.0% |
| !!! | TTTAGCTTTGTCAATGCTTT+TGG | - | chr8.4:21747922-21747941 | None:intergenic | 30.0% |
| AAAAACCCCAGAATAAGCAA+GGG | - | chr8.4:21746605-21746624 | None:intergenic | 35.0% | |
| AAATAGCAAAGCAACGAAGA+GGG | - | chr8.4:21747225-21747244 | None:intergenic | 35.0% | |
| AACTTCAATCAAACTGCTAG+AGG | - | chr8.4:21746365-21746384 | None:intergenic | 35.0% | |
| AAGTCTTTCTTCTCAGCATT+TGG | + | chr8.4:21748452-21748471 | MS.gene011376:CDS | 35.0% | |
| ACTTCAATCAAACTGCTAGA+GGG | - | chr8.4:21746364-21746383 | None:intergenic | 35.0% | |
| AGAACTAAGCTTATAGTTGG+AGG | + | chr8.4:21746876-21746895 | MS.gene011376:intron | 35.0% | |
| AGAATAATAACCGCAGAGAT+AGG | - | chr8.4:21747333-21747352 | None:intergenic | 35.0% | |
| AGAATAGAAAATGCAAAGGC+TGG | + | chr8.4:21747475-21747494 | MS.gene011376:intron | 35.0% | |
| ATAGGTAGTAAAGGTTGAGA+TGG | - | chr8.4:21748153-21748172 | None:intergenic | 35.0% | |
| CAACTAGGGTTTCGTATAAA+GGG | - | chr8.4:21745822-21745841 | None:intergenic | 35.0% | |
| CAGTGAAAAGATTACAACTC+AGG | + | chr8.4:21747422-21747441 | MS.gene011376:intron | 35.0% | |
| CATGGAAATCACCATAATCA+AGG | + | chr8.4:21746752-21746771 | MS.gene011376:intron | 35.0% | |
| GCAGTTTGATTGAAGTTGAA+TGG | + | chr8.4:21746368-21746387 | MS.gene011376:intron | 35.0% | |
| GTATAATGAGTCTTTGTTGG+GGG | + | chr8.4:21746465-21746484 | MS.gene011376:intron | 35.0% | |
| GTATTCTATACATTGCAGCT+TGG | + | chr8.4:21747867-21747886 | MS.gene011376:CDS | 35.0% | |
| GTCATAGGGAAAAAGTTCAT+AGG | - | chr8.4:21748171-21748190 | None:intergenic | 35.0% | |
| TAGGCTAAATTTCATCCATC+GGG | - | chr8.4:21747314-21747333 | None:intergenic | 35.0% | |
| TATATACCCAATGTCACCAA+TGG | + | chr8.4:21746674-21746693 | MS.gene011376:intron | 35.0% | |
| TCCAAACATACTTCTTTAGC+AGG | - | chr8.4:21746290-21746309 | None:intergenic | 35.0% | |
| TCTGTCCAATGTTATTATGC+TGG | - | chr8.4:21748219-21748238 | None:intergenic | 35.0% | |
| TCTTCAAACAAGCTGTCATA+TGG | - | chr8.4:21748029-21748048 | None:intergenic | 35.0% | |
| TGAAATTTAGCCTATCTCTG+CGG | + | chr8.4:21747320-21747339 | MS.gene011376:intron | 35.0% | |
| TGATCTCTCTCATGTAATAC+CGG | - | chr8.4:21748675-21748694 | None:intergenic | 35.0% | |
| TGGGAGAATAGAAAATGCAA+AGG | + | chr8.4:21747471-21747490 | MS.gene011376:intron | 35.0% | |
| TTAGATTACAATGTTGTGGG+AGG | + | chr8.4:21748842-21748861 | MS.gene011376:intron | 35.0% | |
| TTCAATTTCGTCAAGGAACA+TGG | + | chr8.4:21745710-21745729 | MS.gene011376:CDS | 35.0% | |
| TTCTATTCTCCCAGTATTCT+AGG | - | chr8.4:21747464-21747483 | None:intergenic | 35.0% | |
| ! | AATAGGCTGAAAGTGTATGA+AGG | + | chr8.4:21748071-21748090 | MS.gene011376:CDS | 35.0% |
| ! | ATTTTCATCTGTCAGCTCAA+AGG | - | chr8.4:21747075-21747094 | None:intergenic | 35.0% |
| ! | TATGACAGCTTGTTTGAAGA+AGG | + | chr8.4:21748029-21748048 | MS.gene011376:intron | 35.0% |
| ! | TCCTGCTAAAGAAGTATGTT+TGG | + | chr8.4:21746286-21746305 | MS.gene011376:intron | 35.0% |
| !! | ACCGTTGTTCTGTTATTTCT+TGG | + | chr8.4:21748310-21748329 | MS.gene011376:intron | 35.0% |
| !! | ATCATCAATTTTAGCACGCA+TGG | - | chr8.4:21745884-21745903 | None:intergenic | 35.0% |
| !! | CTTATTTTTCATCCGGATTG+GGG | + | chr8.4:21747687-21747706 | MS.gene011376:CDS | 35.0% |
| !! | CTTGAACATCTTGTTGTTTG+AGG | - | chr8.4:21745658-21745677 | None:intergenic | 35.0% |
| !! | GAGTTTTTGGACTCCTTATA+TGG | + | chr8.4:21748419-21748438 | MS.gene011376:CDS | 35.0% |
| !!! | CCTTATTTTTCATCCGGATT+GGG | + | chr8.4:21747686-21747705 | MS.gene011376:CDS | 35.0% |
| !!! | GCTTTTGTTTTTCACAGACA+TGG | + | chr8.4:21745795-21745814 | MS.gene011376:intron | 35.0% |
| !!! | TCCTTATTTTTCATCCGGAT+TGG | + | chr8.4:21747685-21747704 | MS.gene011376:CDS | 35.0% |
| !!! | TGTTTTGAGGCTAGCTATTA+TGG | - | chr8.4:21746711-21746730 | None:intergenic | 35.0% |
| AAACCAAGACTGTTGCAGTT+GGG | + | chr8.4:21747829-21747848 | MS.gene011376:CDS | 40.0% | |
| AAGGAGACTTCTTGTTGAAC+AGG | + | chr8.4:21749011-21749030 | MS.gene011376:CDS | 40.0% | |
| ACATTGCAGCTTGGTTTCTT+TGG | + | chr8.4:21747876-21747895 | MS.gene011376:CDS | 40.0% | |
| ATTCTTGAATAGGGAACACG+TGG | - | chr8.4:21746322-21746341 | None:intergenic | 40.0% | |
| CAAAACGGAATCAGCAACTA+GGG | - | chr8.4:21745836-21745855 | None:intergenic | 40.0% | |
| CAAATAGCAAAGCAACGAAG+AGG | - | chr8.4:21747226-21747245 | None:intergenic | 40.0% | |
| CAAGAAGTCTCCTTGCTTAA+TGG | - | chr8.4:21749005-21749024 | None:intergenic | 40.0% | |
| CAATGTCACCAATGGCTTAT+GGG | + | chr8.4:21746682-21746701 | MS.gene011376:intron | 40.0% | |
| CATGACATCTACCATTCACT+GGG | - | chr8.4:21746736-21746755 | None:intergenic | 40.0% | |
| CCCAATCCGGATGAAAAATA+AGG | - | chr8.4:21747689-21747708 | None:intergenic | 40.0% | |
| CTTCAATCAAACTGCTAGAG+GGG | - | chr8.4:21746363-21746382 | None:intergenic | 40.0% | |
| GAAAAACCCCAGAATAAGCA+AGG | - | chr8.4:21746606-21746625 | None:intergenic | 40.0% | |
| GACACGATCCATATCCAAAA+CGG | - | chr8.4:21745851-21745870 | None:intergenic | 40.0% | |
| GATGGAATCCAAGAACAATG+TGG | - | chr8.4:21748135-21748154 | None:intergenic | 40.0% | |
| GCAACTAGGGTTTCGTATAA+AGG | - | chr8.4:21745823-21745842 | None:intergenic | 40.0% | |
| GCTGCAATGTATAGAATACC+AGG | - | chr8.4:21747866-21747885 | None:intergenic | 40.0% | |
| TACCAAGCAACCATTAAGCA+AGG | + | chr8.4:21748992-21749011 | MS.gene011376:CDS | 40.0% | |
| TCAATCACTGTCAAGATCTC+AGG | - | chr8.4:21748380-21748399 | None:intergenic | 40.0% | |
| TGAATGCATCCCAAATCACT+TGG | + | chr8.4:21748797-21748816 | MS.gene011376:intron | 40.0% | |
| TGTTATCTTGAGATGCTCCA+AGG | - | chr8.4:21747808-21747827 | None:intergenic | 40.0% | |
| TTCAATCAAACTGCTAGAGG+GGG | - | chr8.4:21746362-21746381 | None:intergenic | 40.0% | |
| TTTGAGGAGGAAAAGCTTGT+CGG | - | chr8.4:21745642-21745661 | None:intergenic | 40.0% | |
| ! | ACTCTCACCTAAGTTTTCCT+CGG | - | chr8.4:21747638-21747657 | None:intergenic | 40.0% |
| ! | CAAAGGCTGGTGATTTTTCA+GGG | - | chr8.4:21747058-21747077 | None:intergenic | 40.0% |
| ! | CATAAGCCATTGGTGACATT+GGG | - | chr8.4:21746683-21746702 | None:intergenic | 40.0% |
| ! | GACTAATTTGCATCAGGTAG+TGG | + | chr8.4:21748349-21748368 | MS.gene011376:intron | 40.0% |
| ! | TATCACGTTTTATCGCAGCT+GGG | + | chr8.4:21748897-21748916 | MS.gene011376:CDS | 40.0% |
| ! | TCAAAGGCTGGTGATTTTTC+AGG | - | chr8.4:21747059-21747078 | None:intergenic | 40.0% |
| ! | TTTCTTTTCCTTTCTGCTGC+TGG | + | chr8.4:21747744-21747763 | MS.gene011376:intron | 40.0% |
| ! | TTTGAGGCTAGCTATTATGG+TGG | - | chr8.4:21746708-21746727 | None:intergenic | 40.0% |
| !! | AAAAGCGTTTGGAGTATCTG+TGG | + | chr8.4:21748756-21748775 | MS.gene011376:CDS | 40.0% |
| !! | AAAGAGCATTCTTGGCATCA+GGG | - | chr8.4:21748973-21748992 | None:intergenic | 40.0% |
| !! | CTCTTCGTTGCTTTGCTATT+TGG | + | chr8.4:21747224-21747243 | MS.gene011376:intron | 40.0% |
| !! | GAACATCTTGTTGTTTGAGG+AGG | - | chr8.4:21745655-21745674 | None:intergenic | 40.0% |
| !! | TAAAGAGCATTCTTGGCATC+AGG | - | chr8.4:21748974-21748993 | None:intergenic | 40.0% |
| !! | TGCTTGGTAAAGAGCATTCT+TGG | - | chr8.4:21748981-21749000 | None:intergenic | 40.0% |
| !!! | TGCTGATTCCGTTTTGGATA+TGG | + | chr8.4:21745840-21745859 | MS.gene011376:CDS | 40.0% |
| ACTGTAGGACATCTTCAGTC+TGG | - | chr8.4:21747199-21747218 | None:intergenic | 45.0% | |
| ACTTGATTCCAGCAGCAGAA+AGG | - | chr8.4:21747755-21747774 | None:intergenic | 45.0% | |
| CACTCGAAATTTCGAGAAGG+CGG | + | chr8.4:21748109-21748128 | MS.gene011376:CDS | 45.0% | |
| CCAAAACGGAATCAGCAACT+AGG | - | chr8.4:21745837-21745856 | None:intergenic | 45.0% | |
| CCAATGTCACCAATGGCTTA+TGG | + | chr8.4:21746681-21746700 | MS.gene011376:intron | 45.0% | |
| CCAGTGAATGGTAGATGTCA+TGG | + | chr8.4:21746734-21746753 | MS.gene011376:intron | 45.0% | |
| CCATCGGGAATTCTAAGTTC+AGG | - | chr8.4:21747299-21747318 | None:intergenic | 45.0% | |
| CCATGACATCTACCATTCAC+TGG | - | chr8.4:21746737-21746756 | None:intergenic | 45.0% | |
| CCTGAACTTAGAATTCCCGA+TGG | + | chr8.4:21747296-21747315 | MS.gene011376:intron | 45.0% | |
| CCTGACGGAGCAAATTAAGT+TGG | + | chr8.4:21748627-21748646 | MS.gene011376:CDS | 45.0% | |
| CTCAAAACATGCCCAGTGAA+TGG | + | chr8.4:21746722-21746741 | MS.gene011376:intron | 45.0% | |
| CTCATGTAATACCGGAAGTG+TGG | - | chr8.4:21748667-21748686 | None:intergenic | 45.0% | |
| CTCCTTGCTTAATGGTTGCT+TGG | - | chr8.4:21748997-21749016 | None:intergenic | 45.0% | |
| GAAACCAAGACTGTTGCAGT+TGG | + | chr8.4:21747828-21747847 | MS.gene011376:CDS | 45.0% | |
| GAGTGTGACAATTGAAGCCA+TGG | + | chr8.4:21748732-21748751 | MS.gene011376:CDS | 45.0% | |
| GATAAAACGTGATAGCTCCC+TGG | - | chr8.4:21748891-21748910 | None:intergenic | 45.0% | |
| GCTATTTGCATCCACACTTC+CGG | + | chr8.4:21748653-21748672 | MS.gene011376:CDS | 45.0% | |
| GTCCACTCGAAATTTCGAGA+AGG | + | chr8.4:21748106-21748125 | MS.gene011376:CDS | 45.0% | |
| GTGACTGGGAAAGGAAGAAT+AGG | + | chr8.4:21748054-21748073 | MS.gene011376:CDS | 45.0% | |
| GTTTGAAGAAGGTGGTGACT+GGG | + | chr8.4:21748040-21748059 | MS.gene011376:CDS | 45.0% | |
| TACATACCTTGTCCCCAATC+CGG | - | chr8.4:21747702-21747721 | None:intergenic | 45.0% | |
| TGGTCACCCTTGCTTATTCT+GGG | + | chr8.4:21746596-21746615 | MS.gene011376:intron | 45.0% | |
| TGTTTGAAGAAGGTGGTGAC+TGG | + | chr8.4:21748039-21748058 | MS.gene011376:CDS | 45.0% | |
| ! | AGTGAGGTGGACATTGACTA+TGG | - | chr8.4:21747154-21747173 | None:intergenic | 45.0% |
| ! | ATTCATTTCAGCTGGCCTGA+CGG | + | chr8.4:21748612-21748631 | MS.gene011376:intron | 45.0% |
| ! | CATTCACTGGGCATGTTTTG+AGG | - | chr8.4:21746724-21746743 | None:intergenic | 45.0% |
| ! | CATTTTCACTCTGGCAGAGA+AGG | + | chr8.4:21747118-21747137 | MS.gene011376:intron | 45.0% |
| ! | CCATAAGCCATTGGTGACAT+TGG | - | chr8.4:21746684-21746703 | None:intergenic | 45.0% |
| ! | CTATCACGTTTTATCGCAGC+TGG | + | chr8.4:21748896-21748915 | MS.gene011376:CDS | 45.0% |
| ! | GACAGCTTGTTTGAAGAAGG+TGG | + | chr8.4:21748032-21748051 | MS.gene011376:intron | 45.0% |
| ! | GGAAGTGTGGATGCAAATAG+CGG | - | chr8.4:21748654-21748673 | None:intergenic | 45.0% |
| ! | GGATATGGATCGTGTCCTTT+TGG | + | chr8.4:21745855-21745874 | MS.gene011376:CDS | 45.0% |
| ! | TACTCCAAACGCTTTTGCCA+TGG | - | chr8.4:21748752-21748771 | None:intergenic | 45.0% |
| !! | CCAACTTAATTTGCTCCGTC+AGG | - | chr8.4:21748630-21748649 | None:intergenic | 45.0% |
| !!! | CCTAGTTGCTGATTCCGTTT+TGG | + | chr8.4:21745834-21745853 | MS.gene011376:CDS | 45.0% |
| !!! | GGTGATTTTTCAGGGCACAA+CGG | - | chr8.4:21747050-21747069 | None:intergenic | 45.0% |
| !!! | TTTTAGGATTGCTGATGCCG+AGG | + | chr8.4:21747618-21747637 | MS.gene011376:intron | 45.0% |
| AACACTGTCCTCTATGCACC+AGG | + | chr8.4:21747776-21747795 | MS.gene011376:intron | 50.0% | |
| AAGAAGGTGGTGACTGGGAA+AGG | + | chr8.4:21748045-21748064 | MS.gene011376:CDS | 50.0% | |
| AATGTCCACCTCACTTGAGG+AGG | + | chr8.4:21747159-21747178 | MS.gene011376:intron | 50.0% | |
| AGGGTTTACGGAGAGAGAAG+AGG | - | chr8.4:21745744-21745763 | None:intergenic | 50.0% | |
| AGGTGAGAGTGAAGTTCGTG+AGG | + | chr8.4:21747648-21747667 | MS.gene011376:CDS | 50.0% | |
| CAACGAAGAGGGTTCACTGT+AGG | - | chr8.4:21747214-21747233 | None:intergenic | 50.0% | |
| CAGAATAAGCAAGGGTGACC+AGG | - | chr8.4:21746597-21746616 | None:intergenic | 50.0% | |
| CGATCACACGAGACAGTTTC+TGG | - | chr8.4:21749039-21749058 | None:intergenic | 50.0% | |
| CGCCTTCTCGAAATTTCGAG+TGG | - | chr8.4:21748111-21748130 | None:intergenic | 50.0% | |
| CTGGTCACCCTTGCTTATTC+TGG | + | chr8.4:21746595-21746614 | MS.gene011376:intron | 50.0% | |
| GCAGCTTGGTTTCTTTGGCA+TGG | + | chr8.4:21747881-21747900 | MS.gene011376:CDS | 50.0% | |
| GCTGATGCCGAGGAAAACTT+AGG | + | chr8.4:21747628-21747647 | MS.gene011376:CDS | 50.0% | |
| GGGTTTACGGAGAGAGAAGA+GGG | - | chr8.4:21745743-21745762 | None:intergenic | 50.0% | |
| GGTCACCCTTGCTTATTCTG+GGG | + | chr8.4:21746597-21746616 | MS.gene011376:intron | 50.0% | |
| GTCAATGTCCACCTCACTTG+AGG | + | chr8.4:21747156-21747175 | MS.gene011376:intron | 50.0% | |
| TAGCACGCATGGAGTCCAAA+AGG | - | chr8.4:21745873-21745892 | None:intergenic | 50.0% | |
| TATGCACCAGGAGAAAGCCT+TGG | + | chr8.4:21747788-21747807 | MS.gene011376:intron | 50.0% | |
| TATGGTGGCCCATAAGCCAT+TGG | - | chr8.4:21746693-21746712 | None:intergenic | 50.0% | |
| TCATCTGTCAGCTCAAAGGC+TGG | - | chr8.4:21747071-21747090 | None:intergenic | 50.0% | |
| TGAAGTTCGTGAGGCTCACT+TGG | + | chr8.4:21747657-21747676 | MS.gene011376:CDS | 50.0% | |
| TGTTGCAGTTGGGCAGAAGA+TGG | + | chr8.4:21747839-21747858 | MS.gene011376:CDS | 50.0% | |
| TTCGAGTGGACATGCAGTAG+AGG | - | chr8.4:21748097-21748116 | None:intergenic | 50.0% | |
| ! | TTTCATCCGGATTGGGGACA+AGG | + | chr8.4:21747693-21747712 | MS.gene011376:CDS | 50.0% |
| !! | GAAGCCATGGCAAAAGCGTT+TGG | + | chr8.4:21748745-21748764 | MS.gene011376:CDS | 50.0% |
| AGTTGGGCAGAAGATGGACC+TGG | + | chr8.4:21747845-21747864 | MS.gene011376:CDS | 55.0% | |
| CATTGCAGCCTCCTCAAGTG+AGG | - | chr8.4:21747170-21747189 | None:intergenic | 55.0% | |
| CTGCCCAACTGCAACAGTCT+TGG | - | chr8.4:21747835-21747854 | None:intergenic | 55.0% | |
| GAAGGCGGCCACATTGTTCT+TGG | + | chr8.4:21748124-21748143 | MS.gene011376:CDS | 55.0% | |
| GAGCATTCTTGGCATCAGGG+CGG | - | chr8.4:21748970-21748989 | None:intergenic | 55.0% | |
| GATGCTCCAAGGCTTTCTCC+TGG | - | chr8.4:21747797-21747816 | None:intergenic | 55.0% | |
| GGCTTTCTCCTGGTGCATAG+AGG | - | chr8.4:21747787-21747806 | None:intergenic | 55.0% | |
| TTGTCGGCGAGGACAAGTTG+TGG | - | chr8.4:21745626-21745645 | None:intergenic | 55.0% | |
| GGAGGAAAAGCTTGTCGGCG+AGG | - | chr8.4:21745637-21745656 | None:intergenic | 60.0% | |
| TGCAGCCTCCTCAAGTGAGG+TGG | - | chr8.4:21747167-21747186 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 21745593 | 21749066 | 21745593 | ID=MS.gene011376 |
| chr8.4 | mRNA | 21745593 | 21749066 | 21745593 | ID=MS.gene011376.t1;Parent=MS.gene011376 |
| chr8.4 | exon | 21745593 | 21745731 | 21745593 | ID=MS.gene011376.t1.exon1;Parent=MS.gene011376.t1 |
| chr8.4 | CDS | 21745593 | 21745731 | 21745593 | ID=cds.MS.gene011376.t1;Parent=MS.gene011376.t1 |
| chr8.4 | exon | 21745812 | 21745926 | 21745812 | ID=MS.gene011376.t1.exon2;Parent=MS.gene011376.t1 |
| chr8.4 | CDS | 21745812 | 21745926 | 21745812 | ID=cds.MS.gene011376.t1;Parent=MS.gene011376.t1 |
| chr8.4 | exon | 21747624 | 21747714 | 21747624 | ID=MS.gene011376.t1.exon3;Parent=MS.gene011376.t1 |
| chr8.4 | CDS | 21747624 | 21747714 | 21747624 | ID=cds.MS.gene011376.t1;Parent=MS.gene011376.t1 |
| chr8.4 | exon | 21747798 | 21747943 | 21747798 | ID=MS.gene011376.t1.exon4;Parent=MS.gene011376.t1 |
| chr8.4 | CDS | 21747798 | 21747943 | 21747798 | ID=cds.MS.gene011376.t1;Parent=MS.gene011376.t1 |
| chr8.4 | exon | 21748037 | 21748256 | 21748037 | ID=MS.gene011376.t1.exon5;Parent=MS.gene011376.t1 |
| chr8.4 | CDS | 21748037 | 21748256 | 21748037 | ID=cds.MS.gene011376.t1;Parent=MS.gene011376.t1 |
| chr8.4 | exon | 21748365 | 21748473 | 21748365 | ID=MS.gene011376.t1.exon6;Parent=MS.gene011376.t1 |
| chr8.4 | CDS | 21748365 | 21748473 | 21748365 | ID=cds.MS.gene011376.t1;Parent=MS.gene011376.t1 |
| chr8.4 | exon | 21748623 | 21748791 | 21748623 | ID=MS.gene011376.t1.exon7;Parent=MS.gene011376.t1 |
| chr8.4 | CDS | 21748623 | 21748791 | 21748623 | ID=cds.MS.gene011376.t1;Parent=MS.gene011376.t1 |
| chr8.4 | exon | 21748892 | 21749066 | 21748892 | ID=MS.gene011376.t1.exon8;Parent=MS.gene011376.t1 |
| chr8.4 | CDS | 21748892 | 21749066 | 21748892 | ID=cds.MS.gene011376.t1;Parent=MS.gene011376.t1 |
| Gene Sequence |
| Protein sequence |
