Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058061.t1 | XP_003610773.1 | 100 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 2.70E-110 | 407.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058061.t1 | O23714 | 88.9 | 198 | 22 | 0 | 1 | 198 | 1 | 198 | 1.4e-99 | 363.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058061.t1 | G7K3S8 | 100.0 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 2.0e-110 | 407.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058061.t1 | MTR_5g006840 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 5.80e-153 | 422 |
| MS.gene058061.t1 | MTR_5g012470 | 96.000 | 200 | 8 | 0 | 1 | 200 | 1 | 200 | 1.27e-145 | 403 |
| MS.gene058061.t1 | MTR_2g050000 | 95.413 | 109 | 3 | 1 | 95 | 203 | 2 | 108 | 1.31e-71 | 213 |
| MS.gene058061.t1 | MTR_1g112250 | 30.464 | 151 | 94 | 3 | 13 | 155 | 45 | 192 | 8.39e-13 | 65.5 |
| MS.gene058061.t1 | MTR_3g109210 | 26.087 | 161 | 117 | 1 | 3 | 163 | 15 | 173 | 1.72e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058061.t1 | AT3G22630 | 87.129 | 202 | 26 | 0 | 1 | 202 | 1 | 202 | 6.55e-135 | 376 |
| MS.gene058061.t1 | AT4G14800 | 87.374 | 198 | 25 | 0 | 1 | 198 | 1 | 198 | 7.00e-132 | 369 |
| MS.gene058061.t1 | AT4G14800 | 80.841 | 214 | 25 | 1 | 1 | 198 | 1 | 214 | 2.21e-127 | 358 |
| MS.gene058061.t1 | AT3G14290 | 31.126 | 151 | 93 | 3 | 13 | 155 | 45 | 192 | 3.05e-13 | 66.6 |
Find 41 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTTGATAAGTGCATTT+TGG | 0.220132 | 5.1:+1524205 | MS.gene058061:CDS |
| CTTTGTATCAATTCCGTAAT+GGG | 0.276520 | 5.1:+1521071 | MS.gene058061:CDS |
| TTTGAATGTATTCAGTAAAC+TGG | 0.314079 | 5.1:-1521039 | None:intergenic |
| AAGCTTGAAAAGGGAGCTTT+TGG | 0.328358 | 5.1:+1524107 | MS.gene058061:CDS |
| TCTGTGAACATCCTTCTTGC+TGG | 0.377484 | 5.1:+1524026 | MS.gene058061:CDS |
| GCTTTGTATCAATTCCGTAA+TGG | 0.426748 | 5.1:+1521070 | MS.gene058061:CDS |
| AGAAGGATGTTCACAGAGTA+GGG | 0.434546 | 5.1:-1524020 | None:intergenic |
| GACACTTCACAAGCTTGAAA+AGG | 0.445538 | 5.1:+1524097 | MS.gene058061:CDS |
| CTAGCGGTGAACCCGGTGAC+AGG | 0.462278 | 5.1:+1520927 | MS.gene058061:CDS |
| AAGAAGGATGTTCACAGAGT+AGG | 0.469415 | 5.1:-1524021 | None:intergenic |
| GAACATGATCTTGTCTTCGT+TGG | 0.478439 | 5.1:-1520879 | None:intergenic |
| TGGTGAGAGGAATCCCATTA+CGG | 0.502878 | 5.1:-1521084 | None:intergenic |
| TTTGGAAATCAGATCAAGGT+TGG | 0.503786 | 5.1:+1524223 | MS.gene058061:CDS |
| GGATTAAATCAAGCTGAAGC+AGG | 0.515437 | 5.1:-1524332 | None:intergenic |
| ACACTTCACAAGCTTGAAAA+GGG | 0.519514 | 5.1:+1524098 | MS.gene058061:CDS |
| AATCAGATCAAGGTTGGTTG+TGG | 0.521276 | 5.1:+1524229 | MS.gene058061:CDS |
| TGGTAATGGCTTCGCGATCG+TGG | 0.521317 | 5.1:+1520814 | MS.gene058061:CDS |
| GCTTGCCACCGCTCTTCGCA+AGG | 0.527948 | 5.1:+1521138 | MS.gene058061:CDS |
| CTTCCACGTTCATTCCGCTA+TGG | 0.534157 | 5.1:-1524172 | None:intergenic |
| GCTGGTTATGACAAAGAGAC+AGG | 0.546617 | 5.1:+1524044 | MS.gene058061:CDS |
| TAGTCAATGTAATATAGTGA+TGG | 0.549687 | 5.1:-1524068 | None:intergenic |
| TAATCCGAAAACGCATTCCA+TGG | 0.555612 | 5.1:-1520789 | None:intergenic |
| GCAGCAGCAGCTGTGGTGAG+AGG | 0.566652 | 5.1:-1521097 | None:intergenic |
| ATCGCTGCTAGCGGTGAACC+CGG | 0.569631 | 5.1:+1520920 | MS.gene058061:CDS |
| CTTTGTCATAACCAGCAAGA+AGG | 0.572175 | 5.1:-1524037 | None:intergenic |
| AGTCAATGTAATATAGTGAT+GGG | 0.575452 | 5.1:-1524067 | None:intergenic |
| AAGAGAGTGAAACCTGTCAC+CGG | 0.576291 | 5.1:-1520939 | None:intergenic |
| GAAATTAGCAGCAGCAGCTG+TGG | 0.588351 | 5.1:-1521104 | None:intergenic |
| CGCATGGCGCGAATCAGTCA+AGG | 0.602986 | 5.1:+1524304 | MS.gene058061:CDS |
| GAATACCTTGCGAAGAGCGG+TGG | 0.614639 | 5.1:-1521143 | None:intergenic |
| CTTCGTTGGATTTGTGAACG+AGG | 0.622483 | 5.1:-1520865 | None:intergenic |
| CTTCCATAGCGGAATGAACG+TGG | 0.622934 | 5.1:+1524169 | MS.gene058061:CDS |
| CACAAACTCATCGCTGCTAG+CGG | 0.629383 | 5.1:+1520911 | MS.gene058061:CDS |
| ATGGTGCAAGAGAGTACGCA+TGG | 0.636054 | 5.1:+1524288 | MS.gene058061:CDS |
| AGAGAGTGAAACCTGTCACC+GGG | 0.641820 | 5.1:-1520938 | None:intergenic |
| ATTGAATACCTTGCGAAGAG+CGG | 0.643228 | 5.1:-1521146 | None:intergenic |
| GCTGCTGCTAATTTCACTCG+TGG | 0.647526 | 5.1:+1521112 | MS.gene058061:CDS |
| CGATGAGTTTGTGTGAATCG+AGG | 0.648197 | 5.1:-1520901 | None:intergenic |
| GTGAACGAGGATGCTGTGAA+CGG | 0.695181 | 5.1:-1520852 | None:intergenic |
| TAATGGCTTCGCGATCGTGG+TGG | 0.707184 | 5.1:+1520817 | MS.gene058061:CDS |
| ATGGACAGACACTTCCATAG+CGG | 0.741310 | 5.1:+1524158 | MS.gene058061:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGAAAAAAAATAAAAAG+GGG | - | chr5.1:1522244-1522263 | None:intergenic | 10.0% |
| !!! | AATCTTTTTATTGATAATAA+AGG | - | chr5.1:1523738-1523757 | None:intergenic | 10.0% |
| !!! | ATTAAAATAGTCATAATTTT+GGG | - | chr5.1:1523005-1523024 | None:intergenic | 10.0% |
| !!! | TTATCAATAAAAAGATTTTT+TGG | + | chr5.1:1523741-1523760 | MS.gene058061:intron | 10.0% |
| !! | AAAATTAGGTAAACAAAAAA+AGG | - | chr5.1:1521183-1521202 | None:intergenic | 15.0% |
| !! | AAATTAGGTAAACAAAAAAA+GGG | - | chr5.1:1521182-1521201 | None:intergenic | 15.0% |
| !! | AATGTAAAGTGATTTATATT+TGG | - | chr5.1:1522852-1522871 | None:intergenic | 15.0% |
| !!! | AATAAAAAGATTTTTTGGAA+AGG | + | chr5.1:1523746-1523765 | MS.gene058061:intron | 15.0% |
| !!! | ACAATTTTTATAACAAAGTT+TGG | - | chr5.1:1524260-1524279 | None:intergenic | 15.0% |
| !!! | ATTAGGGTTTTAAAAAATTA+AGG | - | chr5.1:1522282-1522301 | None:intergenic | 15.0% |
| !!! | CAAAATTATGACTATTTTAA+TGG | + | chr5.1:1523004-1523023 | MS.gene058061:intron | 15.0% |
| !!! | CATTAAAATAGTCATAATTT+TGG | - | chr5.1:1523006-1523025 | None:intergenic | 15.0% |
| !!! | TATGTTATTTATCAATAAGT+AGG | + | chr5.1:1523594-1523613 | MS.gene058061:intron | 15.0% |
| !!! | TGTATTTTTTATTTCACTTT+TGG | + | chr5.1:1521312-1521331 | MS.gene058061:intron | 15.0% |
| !!! | TTACTAGTACTATATAATTT+TGG | + | chr5.1:1523073-1523092 | MS.gene058061:intron | 15.0% |
| !! | AACAACAAAAAAAAAAACCA+AGG | - | chr5.1:1523051-1523070 | None:intergenic | 20.0% |
| !! | AATATACACAACCAATAATA+CGG | - | chr5.1:1522652-1522671 | None:intergenic | 20.0% |
| !! | AATTAGGTAAACAAAAAAAG+GGG | - | chr5.1:1521181-1521200 | None:intergenic | 20.0% |
| !! | CTATTCAACACTAAATATTA+GGG | - | chr5.1:1521212-1521231 | None:intergenic | 20.0% |
| !! | CTCATTTGTCTTAATTTATA+TGG | + | chr5.1:1523653-1523672 | MS.gene058061:intron | 20.0% |
| !! | TAGATAATGATAGAACATTA+TGG | - | chr5.1:1522403-1522422 | None:intergenic | 20.0% |
| !! | TATTAGGGTTTGAAAAAATT+AGG | - | chr5.1:1521197-1521216 | None:intergenic | 20.0% |
| !! | TCATACATATATCTATACAA+CGG | + | chr5.1:1522323-1522342 | MS.gene058061:intron | 20.0% |
| !! | TCTATTCAACACTAAATATT+AGG | - | chr5.1:1521213-1521232 | None:intergenic | 20.0% |
| !! | TGTTATAAAAATTGTTGACA+AGG | + | chr5.1:1524265-1524284 | MS.gene058061:CDS | 20.0% |
| !!! | AACACTAATCATCTTTTTAT+AGG | + | chr5.1:1523677-1523696 | MS.gene058061:intron | 20.0% |
| !!! | ATAATTGATTTTGACATGTT+TGG | + | chr5.1:1522714-1522733 | MS.gene058061:intron | 20.0% |
| !!! | ATATTTGGTTTTACTTTTAG+AGG | + | chr5.1:1522667-1522686 | MS.gene058061:intron | 20.0% |
| !!! | ATTTTTATAACAAAGTTTGG+AGG | - | chr5.1:1524257-1524276 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTTCACTTTTGG+AGG | + | chr5.1:1521315-1521334 | MS.gene058061:intron | 20.0% |
| !!! | GTAATTTTCCTTTGTTTTTT+TGG | - | chr5.1:1523433-1523452 | None:intergenic | 20.0% |
| !!! | TATTATTGGTTGTGTATATT+TGG | + | chr5.1:1522652-1522671 | MS.gene058061:intron | 20.0% |
| ! | AAATACTGGATATATATGCT+TGG | - | chr5.1:1523194-1523213 | None:intergenic | 25.0% |
| ! | AAATAGGGTTTGAATGAAAT+GGG | + | chr5.1:1523556-1523575 | MS.gene058061:intron | 25.0% |
| ! | AAATATTACTAGTACTACCT+TGG | + | chr5.1:1523031-1523050 | MS.gene058061:intron | 25.0% |
| ! | AATACTGGATATATATGCTT+GGG | - | chr5.1:1523193-1523212 | None:intergenic | 25.0% |
| ! | AATCCATGAAAAGTTTAGAT+GGG | + | chr5.1:1521531-1521550 | MS.gene058061:intron | 25.0% |
| ! | ACATACATAAACAATAATGC+AGG | - | chr5.1:1521625-1521644 | None:intergenic | 25.0% |
| ! | AGTCAATGTAATATAGTGAT+GGG | - | chr5.1:1524070-1524089 | None:intergenic | 25.0% |
| ! | ATAAAAATTGTTGACAAGGA+TGG | + | chr5.1:1524269-1524288 | MS.gene058061:CDS | 25.0% |
| ! | ATAAATTAAGACAAATGAGC+AGG | - | chr5.1:1523652-1523671 | None:intergenic | 25.0% |
| ! | ATATACACAACCAATAATAC+GGG | - | chr5.1:1522651-1522670 | None:intergenic | 25.0% |
| ! | GTATAGATATATGTATGATG+AGG | - | chr5.1:1522321-1522340 | None:intergenic | 25.0% |
| ! | TAGTCAATGTAATATAGTGA+TGG | - | chr5.1:1524071-1524090 | None:intergenic | 25.0% |
| ! | TATTAAATACAATAAGTCGC+TGG | - | chr5.1:1521849-1521868 | None:intergenic | 25.0% |
| ! | TCTATAATAACAATGCAACA+TGG | - | chr5.1:1523959-1523978 | None:intergenic | 25.0% |
| ! | TTTGAATGTATTCAGTAAAC+TGG | - | chr5.1:1521042-1521061 | None:intergenic | 25.0% |
| !! | AATTCTTTTCGACAATTCTA+CGG | - | chr5.1:1523871-1523890 | None:intergenic | 25.0% |
| !! | AATTGATTCTAGCTAAAAGT+CGG | - | chr5.1:1522878-1522897 | None:intergenic | 25.0% |
| !! | AGCATATATATCCAGTATTT+TGG | + | chr5.1:1523194-1523213 | MS.gene058061:intron | 25.0% |
| !! | GGATTTAGTTTATGTCAATT+GGG | + | chr5.1:1522486-1522505 | MS.gene058061:intron | 25.0% |
| !! | TGGATTTAGTTTATGTCAAT+TGG | + | chr5.1:1522485-1522504 | MS.gene058061:intron | 25.0% |
| !! | TTTGAGATTTGACAAGTATT+GGG | + | chr5.1:1521977-1521996 | MS.gene058061:intron | 25.0% |
| !!! | AAGGATAGTACTGATTATTA+GGG | - | chr5.1:1522298-1522317 | None:intergenic | 25.0% |
| !!! | AGATTTCAAGTAGTAGTTTT+CGG | - | chr5.1:1522132-1522151 | None:intergenic | 25.0% |
| !!! | ATAATTGATTTTGACGTGTT+TGG | + | chr5.1:1521362-1521381 | MS.gene058061:intron | 25.0% |
| !!! | CATCATTGATAGTGAAAAAT+AGG | - | chr5.1:1524141-1524160 | None:intergenic | 25.0% |
| !!! | CTATTTTTCACTATCAATGA+TGG | + | chr5.1:1524139-1524158 | MS.gene058061:CDS | 25.0% |
| !!! | GATTTTAGCCTTGAATTTAA+TGG | + | chr5.1:1522801-1522820 | MS.gene058061:intron | 25.0% |
| !!! | GTACTATATAATTTTGGTCT+AGG | + | chr5.1:1523079-1523098 | MS.gene058061:intron | 25.0% |
| !!! | TAATTGATTTTGACGTGTTT+GGG | + | chr5.1:1521363-1521382 | MS.gene058061:intron | 25.0% |
| !!! | TTTTGAGATTTGACAAGTAT+TGG | + | chr5.1:1521976-1521995 | MS.gene058061:intron | 25.0% |
| !!! | TTTTTTTGGAGTGATGATTA+TGG | - | chr5.1:1523419-1523438 | None:intergenic | 25.0% |
| AAAAAGGGGTAATTTGAACT+TGG | - | chr5.1:1522230-1522249 | None:intergenic | 30.0% | |
| AAACACATGACAAGTTTAGA+TGG | + | chr5.1:1522558-1522577 | MS.gene058061:intron | 30.0% | |
| AACACATGACAAGTTTAGAT+GGG | + | chr5.1:1522559-1522578 | MS.gene058061:intron | 30.0% | |
| AACCTATGTCAAAAATCTCT+TGG | + | chr5.1:1521924-1521943 | MS.gene058061:intron | 30.0% | |
| AAGGGTTTGAAAAAGTTTAC+AGG | - | chr5.1:1521878-1521897 | None:intergenic | 30.0% | |
| AAGTTGAATCTCTTTCTTTC+TGG | + | chr5.1:1522952-1522971 | MS.gene058061:intron | 30.0% | |
| AATCTAAGCATATCAATAGC+TGG | - | chr5.1:1523910-1523929 | None:intergenic | 30.0% | |
| ACTTGCAAAAATGGTTGAAT+GGG | - | chr5.1:1523489-1523508 | None:intergenic | 30.0% | |
| AGATATATGTATGATGAGGA+AGG | - | chr5.1:1522317-1522336 | None:intergenic | 30.0% | |
| AGTTTATTCACACGTGAATT+TGG | + | chr5.1:1523984-1524003 | MS.gene058061:intron | 30.0% | |
| ATATATGCTTGGGTTCATAT+GGG | - | chr5.1:1523183-1523202 | None:intergenic | 30.0% | |
| ATCCATGAAAAGTTTAGATG+GGG | + | chr5.1:1521532-1521551 | MS.gene058061:intron | 30.0% | |
| CAGTTGAAGATGAAATAAAG+AGG | + | chr5.1:1522041-1522060 | MS.gene058061:intron | 30.0% | |
| CTTTGTATCAATTCCGTAAT+GGG | + | chr5.1:1521071-1521090 | MS.gene058061:CDS | 30.0% | |
| GAAATAGGGTTTGAATGAAA+TGG | + | chr5.1:1523555-1523574 | MS.gene058061:intron | 30.0% | |
| GAATACATTTGTGCTAAAGT+GGG | - | chr5.1:1521479-1521498 | None:intergenic | 30.0% | |
| GAATCCATGAAAAGTTTAGA+TGG | + | chr5.1:1521530-1521549 | MS.gene058061:intron | 30.0% | |
| GGATACATTTGTGTAAAAGT+GGG | - | chr5.1:1522831-1522850 | None:intergenic | 30.0% | |
| TATATATGCTTGGGTTCATA+TGG | - | chr5.1:1523184-1523203 | None:intergenic | 30.0% | |
| TATTTCTCTCAAAATTTGGG+GGG | - | chr5.1:1523541-1523560 | None:intergenic | 30.0% | |
| TCATCACTCCAAAAAAACAA+AGG | + | chr5.1:1523422-1523441 | MS.gene058061:intron | 30.0% | |
| TGAATACATTTGTGCTAAAG+TGG | - | chr5.1:1521480-1521499 | None:intergenic | 30.0% | |
| TGGATACATTTGTGTAAAAG+TGG | - | chr5.1:1522832-1522851 | None:intergenic | 30.0% | |
| ! | ACCCTATTTCTCTCAAAATT+TGG | - | chr5.1:1523545-1523564 | None:intergenic | 30.0% |
| ! | CCCTATTTCTCTCAAAATTT+GGG | - | chr5.1:1523544-1523563 | None:intergenic | 30.0% |
| ! | CCTATTTCTCTCAAAATTTG+GGG | - | chr5.1:1523543-1523562 | None:intergenic | 30.0% |
| ! | CTATTTCTCTCAAAATTTGG+GGG | - | chr5.1:1523542-1523561 | None:intergenic | 30.0% |
| ! | CTCTTTATTTCATCTTCAAC+TGG | - | chr5.1:1522043-1522062 | None:intergenic | 30.0% |
| ! | TACCAAGAGATTTTTGACAT+AGG | - | chr5.1:1521929-1521948 | None:intergenic | 30.0% |
| ! | TTGAGATTTGACAAGTATTG+GGG | + | chr5.1:1521978-1521997 | MS.gene058061:intron | 30.0% |
| !! | CATTCGTTTTTCACTTTTCA+GGG | + | chr5.1:1521015-1521034 | MS.gene058061:intron | 30.0% |
| !! | CCCAAATTTTGAGAGAAATA+GGG | + | chr5.1:1523541-1523560 | MS.gene058061:intron | 30.0% |
| !! | GAAGGATAGTACTGATTATT+AGG | - | chr5.1:1522299-1522318 | None:intergenic | 30.0% |
| !! | TACACCTCTAGAATCAAATT+TGG | - | chr5.1:1522695-1522714 | None:intergenic | 30.0% |
| !! | TCATTCGTTTTTCACTTTTC+AGG | + | chr5.1:1521014-1521033 | MS.gene058061:intron | 30.0% |
| !! | TCTTGTTGATAAGTGCATTT+TGG | + | chr5.1:1524205-1524224 | MS.gene058061:CDS | 30.0% |
| !! | TGTTTCTATCTCCTTTTGAA+CGG | - | chr5.1:1522543-1522562 | None:intergenic | 30.0% |
| !!! | ATATCCAGTATTTTGGTTGA+GGG | + | chr5.1:1523201-1523220 | MS.gene058061:intron | 30.0% |
| !!! | CATTAGATTTTTTACGCTAC+AGG | + | chr5.1:1523281-1523300 | MS.gene058061:intron | 30.0% |
| !!! | TATATCCAGTATTTTGGTTG+AGG | + | chr5.1:1523200-1523219 | MS.gene058061:intron | 30.0% |
| AAAGCTACAAATCCTAGCTT+CGG | - | chr5.1:1521415-1521434 | None:intergenic | 35.0% | |
| AAATAGGTTGTGGCTAATGA+AGG | - | chr5.1:1523393-1523412 | None:intergenic | 35.0% | |
| AAGGGTTATCTCTCATACAA+TGG | - | chr5.1:1522081-1522100 | None:intergenic | 35.0% | |
| AATAGGTTGTGGCTAATGAA+GGG | - | chr5.1:1523392-1523411 | None:intergenic | 35.0% | |
| AATCTTGAAGCTTAGTGACA+GGG | + | chr5.1:1521948-1521967 | MS.gene058061:intron | 35.0% | |
| ACAAATGAGCAGGAACTATT+AGG | - | chr5.1:1523642-1523661 | None:intergenic | 35.0% | |
| ACACTTATGACTTACCTATC+CGG | + | chr5.1:1523837-1523856 | MS.gene058061:intron | 35.0% | |
| ACACTTCACAAGCTTGAAAA+GGG | + | chr5.1:1524098-1524117 | MS.gene058061:CDS | 35.0% | |
| AGAGATTCACAAACTGAAGT+AGG | - | chr5.1:1522016-1522035 | None:intergenic | 35.0% | |
| AGGAATCTTAAAGGACTTTC+AGG | + | chr5.1:1523248-1523267 | MS.gene058061:intron | 35.0% | |
| AGTCTGAGCCAAACTTAATA+AGG | + | chr5.1:1523506-1523525 | MS.gene058061:intron | 35.0% | |
| ATGAGTTCGTTTGATCCATA+TGG | + | chr5.1:1521256-1521275 | MS.gene058061:intron | 35.0% | |
| CAATTCTACGGATCAATATC+CGG | - | chr5.1:1523859-1523878 | None:intergenic | 35.0% | |
| GACTTGCAAAAATGGTTGAA+TGG | - | chr5.1:1523490-1523509 | None:intergenic | 35.0% | |
| GCTTTGTATCAATTCCGTAA+TGG | + | chr5.1:1521070-1521089 | MS.gene058061:CDS | 35.0% | |
| GTAGATCAACAAGTGAAGAA+AGG | + | chr5.1:1521649-1521668 | MS.gene058061:intron | 35.0% | |
| TAATCTTGAAGCTTAGTGAC+AGG | + | chr5.1:1521947-1521966 | MS.gene058061:intron | 35.0% | |
| TCCCAAAACACATAAGAACA+CGG | + | chr5.1:1523335-1523354 | MS.gene058061:intron | 35.0% | |
| TTTGGAAATCAGATCAAGGT+TGG | + | chr5.1:1524223-1524242 | MS.gene058061:CDS | 35.0% | |
| TTTGGCATGTCATTCTACAA+GGG | - | chr5.1:1522099-1522118 | None:intergenic | 35.0% | |
| ! | ACATAGGTTTTCAGTTTCCA+GGG | - | chr5.1:1521913-1521932 | None:intergenic | 35.0% |
| ! | ACCGTGTTCTTATGTGTTTT+GGG | - | chr5.1:1523339-1523358 | None:intergenic | 35.0% |
| ! | ATTATGGTGGAAATAGGTTG+TGG | - | chr5.1:1523403-1523422 | None:intergenic | 35.0% |
| ! | GTGATGATTATGGTGGAAAT+AGG | - | chr5.1:1523409-1523428 | None:intergenic | 35.0% |
| ! | TCTTTTTCTGTGTATGTGAC+TGG | - | chr5.1:1523789-1523808 | None:intergenic | 35.0% |
| ! | TGGGTTGACCATTAAATTCA+AGG | - | chr5.1:1522812-1522831 | None:intergenic | 35.0% |
| !! | ATTGATTTTAACCCGAAGCT+AGG | + | chr5.1:1521400-1521419 | MS.gene058061:intron | 35.0% |
| !! | CCCCAAATTTTGAGAGAAAT+AGG | + | chr5.1:1523540-1523559 | MS.gene058061:intron | 35.0% |
| !! | CTAAGTTAAGTTGATGATGG+AGG | - | chr5.1:1523368-1523387 | None:intergenic | 35.0% |
| !! | GCATTTTGGAAATCAGATCA+AGG | + | chr5.1:1524219-1524238 | MS.gene058061:CDS | 35.0% |
| !! | GGACTAAGTTAAGTTGATGA+TGG | - | chr5.1:1523371-1523390 | None:intergenic | 35.0% |
| !!! | GTTTTCGGATTAGTTGGTAA+TGG | + | chr5.1:1520800-1520819 | MS.gene058061:CDS | 35.0% |
| !!! | TATTTTGGTTGAGGGAAGTT+TGG | + | chr5.1:1523209-1523228 | MS.gene058061:intron | 35.0% |
| !!! | TGCATTTTTTTTCCCCATAC+TGG | + | chr5.1:1522427-1522446 | MS.gene058061:intron | 35.0% |
| !!! | TTTTGGAGTGATGATTATGG+TGG | - | chr5.1:1523416-1523435 | None:intergenic | 35.0% |
| AAACTTTGGATGGGAAGAGA+TGG | + | chr5.1:1522180-1522199 | MS.gene058061:intron | 40.0% | |
| AACTTTGGATGGGAAGAGAT+GGG | + | chr5.1:1522181-1522200 | MS.gene058061:intron | 40.0% | |
| AAGAAGGATGTTCACAGAGT+AGG | - | chr5.1:1524024-1524043 | None:intergenic | 40.0% | |
| AAGCTACAAATCCTAGCTTC+GGG | - | chr5.1:1521414-1521433 | None:intergenic | 40.0% | |
| AATGAACAGATCACAGATGG+TGG | - | chr5.1:1523460-1523479 | None:intergenic | 40.0% | |
| ACACAACCAATAATACGGGA+AGG | - | chr5.1:1522647-1522666 | None:intergenic | 40.0% | |
| ACTTCCCTCAACCAAAATAC+TGG | - | chr5.1:1523208-1523227 | None:intergenic | 40.0% | |
| ACTTTCATGTTAGTTCCAGC+AGG | + | chr5.1:1521707-1521726 | MS.gene058061:intron | 40.0% | |
| AGAAGGATGTTCACAGAGTA+GGG | - | chr5.1:1524023-1524042 | None:intergenic | 40.0% | |
| AGAATCCCTTCCCGTATTAT+TGG | + | chr5.1:1522638-1522657 | MS.gene058061:intron | 40.0% | |
| ATCAAACAAACTCTGCCAGT+TGG | + | chr5.1:1521736-1521755 | MS.gene058061:intron | 40.0% | |
| ATCAACCCATGAAACCAGTA+TGG | - | chr5.1:1522444-1522463 | None:intergenic | 40.0% | |
| ATCTCTTCCCATCCAAAGTT+TGG | - | chr5.1:1522181-1522200 | None:intergenic | 40.0% | |
| ATTGAATACCTTGCGAAGAG+CGG | - | chr5.1:1521149-1521168 | None:intergenic | 40.0% | |
| CACAACCAATAATACGGGAA+GGG | - | chr5.1:1522646-1522665 | None:intergenic | 40.0% | |
| CAGCTAACCAAACTTTGGAT+GGG | + | chr5.1:1522171-1522190 | MS.gene058061:intron | 40.0% | |
| CTTTGGCATGTCATTCTACA+AGG | - | chr5.1:1522100-1522119 | None:intergenic | 40.0% | |
| CTTTGTCATAACCAGCAAGA+AGG | - | chr5.1:1524040-1524059 | None:intergenic | 40.0% | |
| GAACATGATCTTGTCTTCGT+TGG | - | chr5.1:1520882-1520901 | None:intergenic | 40.0% | |
| GACACTTCACAAGCTTGAAA+AGG | + | chr5.1:1524097-1524116 | MS.gene058061:CDS | 40.0% | |
| GATTCTCTCAAGTGTGATTC+TGG | - | chr5.1:1521515-1521534 | None:intergenic | 40.0% | |
| GGAGCCAAATTTGATTCTAG+AGG | + | chr5.1:1522688-1522707 | MS.gene058061:intron | 40.0% | |
| GGTCTGTTCAGGAATCTTAA+AGG | + | chr5.1:1523239-1523258 | MS.gene058061:intron | 40.0% | |
| GTCAATGAACAGATCACAGA+TGG | - | chr5.1:1523463-1523482 | None:intergenic | 40.0% | |
| TAACCCAGCTAACCAAACTT+TGG | + | chr5.1:1522166-1522185 | MS.gene058061:intron | 40.0% | |
| TCAACCCATGAAACCAGTAT+GGG | - | chr5.1:1522443-1522462 | None:intergenic | 40.0% | |
| TTAAGATTCCTGAACAGACC+AGG | - | chr5.1:1523239-1523258 | None:intergenic | 40.0% | |
| TTCAGTTTCCAGGGTTATTG+AGG | - | chr5.1:1521904-1521923 | None:intergenic | 40.0% | |
| TTGGCTCAGACTTGCAAAAA+TGG | - | chr5.1:1523498-1523517 | None:intergenic | 40.0% | |
| TTGTTTGATATGGAACCTGC+TGG | - | chr5.1:1521725-1521744 | None:intergenic | 40.0% | |
| ! | AAGCTTGAAAAGGGAGCTTT+TGG | + | chr5.1:1524107-1524126 | MS.gene058061:CDS | 40.0% |
| ! | AATCAGATCAAGGTTGGTTG+TGG | + | chr5.1:1524229-1524248 | MS.gene058061:CDS | 40.0% |
| ! | CACCCCATCTAAACTTTTCA+TGG | - | chr5.1:1521537-1521556 | None:intergenic | 40.0% |
| ! | CACCGTGTTCTTATGTGTTT+TGG | - | chr5.1:1523340-1523359 | None:intergenic | 40.0% |
| ! | CATCCAAAGTTTGGTTAGCT+GGG | - | chr5.1:1522172-1522191 | None:intergenic | 40.0% |
| ! | CTGGCAGAGTTTGTTTGATA+TGG | - | chr5.1:1521735-1521754 | None:intergenic | 40.0% |
| ! | CTTTCTTTTACTGTCAGTGC+TGG | + | chr5.1:1523710-1523729 | MS.gene058061:intron | 40.0% |
| ! | GACATAGGTTTTCAGTTTCC+AGG | - | chr5.1:1521914-1521933 | None:intergenic | 40.0% |
| ! | TGAATCTCTTTCTTTCTGGC+TGG | + | chr5.1:1522956-1522975 | MS.gene058061:intron | 40.0% |
| !! | ACCTGCAGCCTTATTAAGTT+TGG | - | chr5.1:1523517-1523536 | None:intergenic | 40.0% |
| !! | GAAAAGGGAGCTTTTGGTTA+TGG | + | chr5.1:1524113-1524132 | MS.gene058061:CDS | 40.0% |
| !! | TTGACAAGTATTGGGGTTAG+TGG | + | chr5.1:1521985-1522004 | MS.gene058061:intron | 40.0% |
| !! | TTTCCCCATACTGGTTTCAT+GGG | + | chr5.1:1522436-1522455 | MS.gene058061:intron | 40.0% |
| !!! | GAATGCGTTTTCGGATTAGT+TGG | + | chr5.1:1520794-1520813 | MS.gene058061:CDS | 40.0% |
| !!! | TTTTCCCCATACTGGTTTCA+TGG | + | chr5.1:1522435-1522454 | MS.gene058061:intron | 40.0% |
| AAGAGAGTGAAACCTGTCAC+CGG | - | chr5.1:1520942-1520961 | None:intergenic | 45.0% | |
| AAGCCTTAACCCACTAAGTG+GGG | + | chr5.1:1522354-1522373 | MS.gene058061:intron | 45.0% | |
| AAGTCCTGTCTCAGTAAGTG+AGG | - | chr5.1:1521286-1521305 | None:intergenic | 45.0% | |
| ATCCCTGTTATAGCCATCGT+AGG | + | chr5.1:1521673-1521692 | MS.gene058061:intron | 45.0% | |
| ATGGACAGACACTTCCATAG+CGG | + | chr5.1:1524158-1524177 | MS.gene058061:CDS | 45.0% | |
| ATGTATCCAACCCCACTTAG+TGG | - | chr5.1:1522367-1522386 | None:intergenic | 45.0% | |
| CAACCCATGAAACCAGTATG+GGG | - | chr5.1:1522442-1522461 | None:intergenic | 45.0% | |
| CAAGCCTTAACCCACTAAGT+GGG | + | chr5.1:1522353-1522372 | MS.gene058061:intron | 45.0% | |
| CACCTACGATGGCTATAACA+GGG | - | chr5.1:1521678-1521697 | None:intergenic | 45.0% | |
| CCAGCTAACCAAACTTTGGA+TGG | + | chr5.1:1522170-1522189 | MS.gene058061:intron | 45.0% | |
| CCAGGGTTATTGAGGTTCAA+GGG | - | chr5.1:1521896-1521915 | None:intergenic | 45.0% | |
| CCATCCAAAGTTTGGTTAGC+TGG | - | chr5.1:1522173-1522192 | None:intergenic | 45.0% | |
| CGATGAGTTTGTGTGAATCG+AGG | - | chr5.1:1520904-1520923 | None:intergenic | 45.0% | |
| CTACGGATCAATATCCGGAT+AGG | - | chr5.1:1523854-1523873 | None:intergenic | 45.0% | |
| CTTCGTTGGATTTGTGAACG+AGG | - | chr5.1:1520868-1520887 | None:intergenic | 45.0% | |
| GAATAGTCTAAGCGTGCGTT+TGG | - | chr5.1:1522930-1522949 | None:intergenic | 45.0% | |
| GCCAAACTTAATAAGGCTGC+AGG | + | chr5.1:1523513-1523532 | MS.gene058061:intron | 45.0% | |
| GCTGGTTATGACAAAGAGAC+AGG | + | chr5.1:1524044-1524063 | MS.gene058061:CDS | 45.0% | |
| GTCATAAGTGTGCTGTGTCA+TGG | - | chr5.1:1523828-1523847 | None:intergenic | 45.0% | |
| GTGATGTCTCACCGTTCAAA+AGG | + | chr5.1:1522529-1522548 | MS.gene058061:intron | 45.0% | |
| TAGTTGACATGCGAATGGTC+TGG | + | chr5.1:1521759-1521778 | MS.gene058061:intron | 45.0% | |
| TCAAGCCTTAACCCACTAAG+TGG | + | chr5.1:1522352-1522371 | MS.gene058061:intron | 45.0% | |
| TCACCTACGATGGCTATAAC+AGG | - | chr5.1:1521679-1521698 | None:intergenic | 45.0% | |
| TCACTTACTGAGACAGGACT+TGG | + | chr5.1:1521285-1521304 | MS.gene058061:intron | 45.0% | |
| TCCAGGGTTATTGAGGTTCA+AGG | - | chr5.1:1521897-1521916 | None:intergenic | 45.0% | |
| TCTGTGAACATCCTTCTTGC+TGG | + | chr5.1:1524026-1524045 | MS.gene058061:CDS | 45.0% | |
| TGGTGAGAGGAATCCCATTA+CGG | - | chr5.1:1521087-1521106 | None:intergenic | 45.0% | |
| TGTATCCAACCCCACTTAGT+GGG | - | chr5.1:1522366-1522385 | None:intergenic | 45.0% | |
| TTCGCATGTCAACTACCAAC+TGG | - | chr5.1:1521754-1521773 | None:intergenic | 45.0% | |
| ! | GGTGTCGAGATTGATTCTAG+AGG | + | chr5.1:1521336-1521355 | MS.gene058061:intron | 45.0% |
| ! | GTTTTCGGCTCTCTCAACTT+TGG | - | chr5.1:1522117-1522136 | None:intergenic | 45.0% |
| !! | ATCTCTTTCTTTCTGGCTGG+AGG | + | chr5.1:1522959-1522978 | MS.gene058061:intron | 45.0% |
| !! | GTTGGTAGTTGACATGCGAA+TGG | + | chr5.1:1521754-1521773 | MS.gene058061:intron | 45.0% |
| !! | TTGGTTTTCCTGGTCTGTTC+AGG | + | chr5.1:1523228-1523247 | MS.gene058061:intron | 45.0% |
| !!! | TGAGGGAAGTTTGGTTTTCC+TGG | + | chr5.1:1523218-1523237 | MS.gene058061:intron | 45.0% |
| !! | AAATTAGAAAAAAAATAAAA+AGG | - | chr5.1:1522246-1522265 | None:intergenic | 5.0% |
| !! | AATTAGAAAAAAAATAAAAA+GGG | - | chr5.1:1522245-1522264 | None:intergenic | 5.0% |
| !! | TAATGTTAAAATTTAATATT+TGG | + | chr5.1:1522465-1522484 | MS.gene058061:intron | 5.0% |
| AGAGAGTGAAACCTGTCACC+GGG | - | chr5.1:1520941-1520960 | None:intergenic | 50.0% | |
| AGTAAGTGAGGTCGGCCATA+TGG | - | chr5.1:1521274-1521293 | None:intergenic | 50.0% | |
| AGTGTGCTGTGTCATGGTGA+TGG | - | chr5.1:1523822-1523841 | None:intergenic | 50.0% | |
| CACAAACTCATCGCTGCTAG+CGG | + | chr5.1:1520911-1520930 | MS.gene058061:CDS | 50.0% | |
| CCCTTGAACCTCAATAACCC+TGG | + | chr5.1:1521893-1521912 | MS.gene058061:intron | 50.0% | |
| CCTGTCTCAGTAAGTGAGGT+CGG | - | chr5.1:1521282-1521301 | None:intergenic | 50.0% | |
| CTTAACCCACTAAGTGGGGT+TGG | + | chr5.1:1522358-1522377 | MS.gene058061:intron | 50.0% | |
| CTTCCACGTTCATTCCGCTA+TGG | - | chr5.1:1524175-1524194 | None:intergenic | 50.0% | |
| GAAATTAGCAGCAGCAGCTG+TGG | - | chr5.1:1521107-1521126 | None:intergenic | 50.0% | |
| GCTGCTGCTAATTTCACTCG+TGG | + | chr5.1:1521112-1521131 | MS.gene058061:CDS | 50.0% | |
| GGATACCATCATCTCTCGCT+CGG | - | chr5.1:1522209-1522228 | None:intergenic | 50.0% | |
| GTGAACGAGGATGCTGTGAA+CGG | - | chr5.1:1520855-1520874 | None:intergenic | 50.0% | |
| GTGTGCTGTGTCATGGTGAT+GGG | - | chr5.1:1523821-1523840 | None:intergenic | 50.0% | |
| ! | ATGGTGCAAGAGAGTACGCA+TGG | + | chr5.1:1524288-1524307 | MS.gene058061:CDS | 50.0% |
| ! | CTTCCATAGCGGAATGAACG+TGG | + | chr5.1:1524169-1524188 | MS.gene058061:CDS | 50.0% |
| ! | TGTGCTGTGTCATGGTGATG+GGG | - | chr5.1:1523820-1523839 | None:intergenic | 50.0% |
| !! | CAACCCCACTTAGTGGGTTA+AGG | - | chr5.1:1522360-1522379 | None:intergenic | 50.0% |
| CCGACCTCACTTACTGAGAC+AGG | + | chr5.1:1521279-1521298 | MS.gene058061:intron | 55.0% | |
| GAATACCTTGCGAAGAGCGG+TGG | - | chr5.1:1521146-1521165 | None:intergenic | 55.0% | |
| GTGACTGCTCTCACCTACGA+TGG | - | chr5.1:1521689-1521708 | None:intergenic | 55.0% | |
| TAATGGCTTCGCGATCGTGG+TGG | + | chr5.1:1520817-1520836 | MS.gene058061:CDS | 55.0% | |
| !! | GTGCTGTGTCATGGTGATGG+GGG | - | chr5.1:1523819-1523838 | None:intergenic | 55.0% |
| !! | TGGTAATGGCTTCGCGATCG+TGG | + | chr5.1:1520814-1520833 | MS.gene058061:CDS | 55.0% |
| ATCGCTGCTAGCGGTGAACC+CGG | + | chr5.1:1520920-1520939 | MS.gene058061:CDS | 60.0% | |
| CGCATGGCGCGAATCAGTCA+AGG | + | chr5.1:1524304-1524323 | MS.gene058061:CDS | 60.0% | |
| GGGAACCGAGCGAGAGATGA+TGG | + | chr5.1:1522201-1522220 | MS.gene058061:intron | 60.0% | |
| CTAGCGGTGAACCCGGTGAC+AGG | + | chr5.1:1520927-1520946 | MS.gene058061:CDS | 65.0% | |
| GCAGCAGCAGCTGTGGTGAG+AGG | - | chr5.1:1521100-1521119 | None:intergenic | 65.0% | |
| GCTTGCCACCGCTCTTCGCA+AGG | + | chr5.1:1521138-1521157 | MS.gene058061:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 1520791 | 1524346 | 1520791 | ID=MS.gene058061 |
| chr5.1 | mRNA | 1520791 | 1524346 | 1520791 | ID=MS.gene058061.t1;Parent=MS.gene058061 |
| chr5.1 | exon | 1520791 | 1520948 | 1520791 | ID=MS.gene058061.t1.exon1;Parent=MS.gene058061.t1 |
| chr5.1 | CDS | 1520791 | 1520948 | 1520791 | ID=cds.MS.gene058061.t1;Parent=MS.gene058061.t1 |
| chr5.1 | exon | 1521036 | 1521159 | 1521036 | ID=MS.gene058061.t1.exon2;Parent=MS.gene058061.t1 |
| chr5.1 | CDS | 1521036 | 1521159 | 1521036 | ID=cds.MS.gene058061.t1;Parent=MS.gene058061.t1 |
| chr5.1 | exon | 1524017 | 1524346 | 1524017 | ID=MS.gene058061.t1.exon3;Parent=MS.gene058061.t1 |
| chr5.1 | CDS | 1524017 | 1524346 | 1524017 | ID=cds.MS.gene058061.t1;Parent=MS.gene058061.t1 |
| Gene Sequence |
| Protein sequence |
