Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033335.t1 | XP_003608889.1 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.70E-190 | 675.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033335.t1 | Q93Y35 | 76.0 | 387 | 93 | 0 | 1 | 387 | 1 | 387 | 1.2e-160 | 567.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033335.t1 | G7JMM6 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.3e-190 | 675.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033335.t1 | MTR_4g104080 | 99.483 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 0.0 | 783 |
| MS.gene033335.t1 | MTR_8g046560 | 84.342 | 281 | 25 | 4 | 86 | 366 | 260 | 521 | 2.15e-156 | 451 |
| MS.gene033335.t1 | MTR_8g464820 | 95.673 | 208 | 8 | 1 | 96 | 303 | 160 | 366 | 2.77e-141 | 406 |
| MS.gene033335.t1 | MTR_7g076160 | 24.291 | 247 | 180 | 3 | 127 | 371 | 173 | 414 | 5.65e-19 | 88.6 |
| MS.gene033335.t1 | MTR_8g432630 | 23.481 | 362 | 254 | 11 | 23 | 371 | 65 | 416 | 1.54e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033335.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
| MS.gene033335.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
| MS.gene033335.t1 | AT3G61140 | 25.100 | 251 | 180 | 4 | 124 | 372 | 169 | 413 | 5.59e-18 | 85.5 |
Find 78 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAGTCTCCTTGCTTAA+TGG | 0.172394 | 8.2:-20476381 | None:intergenic |
| TTTAGCTTTGTCAATGCTTT+TGG | 0.209748 | 8.2:-20475298 | None:intergenic |
| CGATCACACGAGACAGTTTC+TGG | 0.218957 | 8.2:-20476415 | None:intergenic |
| ACATTGCAGCTTGGTTTCTT+TGG | 0.250558 | 8.2:+20475255 | MS.gene033335:CDS |
| CCTAGTTGCTGATTCCGTTT+TGG | 0.319218 | 8.2:+20473213 | MS.gene033335:CDS |
| TGCTTGGTAAAGAGCATTCT+TGG | 0.319346 | 8.2:-20476357 | None:intergenic |
| GTAAAATATAAAGGTGTCAT+AGG | 0.319394 | 8.2:-20475562 | None:intergenic |
| GAAGGCGGCCACATTGTTCT+TGG | 0.328664 | 8.2:+20475503 | MS.gene033335:CDS |
| GGATATGGATCGTGTCCTTT+TGG | 0.338072 | 8.2:+20473234 | MS.gene033335:CDS |
| GCAACTAGGGTTTCGTATAA+AGG | 0.342274 | 8.2:-20473199 | None:intergenic |
| AAAGCATTGACAAAGCTAAA+AGG | 0.352604 | 8.2:+20475301 | MS.gene033335:CDS |
| TAAAGAGCATTCTTGGCATC+AGG | 0.380008 | 8.2:-20476350 | None:intergenic |
| AAGTCTTTCTTCTCAGCATT+TGG | 0.381841 | 8.2:+20475831 | MS.gene033335:CDS |
| CTTGAACATCTTGTTGTTTG+AGG | 0.383548 | 8.2:-20473034 | None:intergenic |
| CTGCCCAACTGCAACAGTCT+TGG | 0.384938 | 8.2:-20475211 | None:intergenic |
| CAAAACGGTGTAAAATATAA+AGG | 0.388515 | 8.2:-20475571 | None:intergenic |
| AAGGAGACTTCTTGTTGAAC+AGG | 0.394711 | 8.2:+20476390 | MS.gene033335:CDS |
| TGTAAGATTGATAAAGTTGC+AGG | 0.396057 | 8.2:+20476308 | MS.gene033335:CDS |
| GAAGCCATGGCAAAAGCGTT+TGG | 0.405490 | 8.2:+20476124 | MS.gene033335:CDS |
| TCAATCACTGTCAAGATCTC+AGG | 0.407014 | 8.2:-20475756 | None:intergenic |
| GTCTCGTGTGATCGATCTTT+AGG | 0.409640 | 8.2:+20476424 | MS.gene033335:CDS |
| CTTGTATTGACAACCATATA+AGG | 0.412125 | 8.2:-20475811 | None:intergenic |
| GCTATTTGCATCCACACTTC+CGG | 0.415118 | 8.2:+20476032 | MS.gene033335:CDS |
| CTCCTTGCTTAATGGTTGCT+TGG | 0.422700 | 8.2:-20476373 | None:intergenic |
| CAGAGTTTCCTTAAAACAAA+AGG | 0.442207 | 8.2:+20475614 | MS.gene033335:CDS |
| CCAACTTAATTTGCTCCGTC+AGG | 0.445020 | 8.2:-20476006 | None:intergenic |
| CAACTAGGGTTTCGTATAAA+GGG | 0.448981 | 8.2:-20473198 | None:intergenic |
| CCAAAACGGAATCAGCAACT+AGG | 0.455755 | 8.2:-20473213 | None:intergenic |
| GCAGCTTGGTTTCTTTGGCA+TGG | 0.461721 | 8.2:+20475260 | MS.gene033335:CDS |
| TGTTTGAAGAAGGTGGTGAC+TGG | 0.465631 | 8.2:+20475418 | MS.gene033335:CDS |
| TGTTATTATGCTGGTCAAAA+CGG | 0.481534 | 8.2:-20475586 | None:intergenic |
| AAGAAGGTGGTGACTGGGAA+AGG | 0.487909 | 8.2:+20475424 | MS.gene033335:CDS |
| TGAAGTTCGTGAGGCTCACT+TGG | 0.496675 | 8.2:+20475036 | MS.gene033335:CDS |
| TTTGAGGAGGAAAAGCTTGT+CGG | 0.496982 | 8.2:-20473018 | None:intergenic |
| TACATACCTTGTCCCCAATC+CGG | 0.497684 | 8.2:-20475078 | None:intergenic |
| TTTCATCCGGATTGGGGACA+AGG | 0.498726 | 8.2:+20475072 | MS.gene033335:CDS |
| TATGACAGCTTGTTTGAAGA+AGG | 0.509351 | 8.2:+20475408 | MS.gene033335:intron |
| GTATTCTATACATTGCAGCT+TGG | 0.510078 | 8.2:+20475246 | MS.gene033335:CDS |
| TGTTGCAGTTGGGCAGAAGA+TGG | 0.511519 | 8.2:+20475218 | MS.gene033335:CDS |
| TTTGACCAGCATAATAACAT+TGG | 0.511922 | 8.2:+20475590 | MS.gene033335:CDS |
| TTCAATTTCGTCAAGGAACA+TGG | 0.512182 | 8.2:+20473089 | MS.gene033335:CDS |
| TGATCTCTCTCATGTAATAC+CGG | 0.514625 | 8.2:-20476051 | None:intergenic |
| TCTGTCCAATGTTATTATGC+TGG | 0.519046 | 8.2:-20475595 | None:intergenic |
| GTGACTGGGAAAGGAAGAAT+AGG | 0.520244 | 8.2:+20475433 | MS.gene033335:CDS |
| TGTTATCTTGAGATGCTCCA+AGG | 0.535770 | 8.2:-20475184 | None:intergenic |
| AAACCAAGACTGTTGCAGTT+GGG | 0.539841 | 8.2:+20475208 | MS.gene033335:CDS |
| GCTGATGCCGAGGAAAACTT+AGG | 0.544982 | 8.2:+20475007 | MS.gene033335:CDS |
| TAAAATATAAAGGTGTCATA+GGG | 0.545376 | 8.2:-20475561 | None:intergenic |
| GACACGATCCATATCCAAAA+CGG | 0.546950 | 8.2:-20473227 | None:intergenic |
| GAAACCAAGACTGTTGCAGT+TGG | 0.547733 | 8.2:+20475207 | MS.gene033335:CDS |
| CCTGACGGAGCAAATTAAGT+TGG | 0.551415 | 8.2:+20476006 | MS.gene033335:CDS |
| TAGCACGCATGGAGTCCAAA+AGG | 0.551715 | 8.2:-20473249 | None:intergenic |
| ATAGGTAGTAAAGGTTGAGA+TGG | 0.554018 | 8.2:-20475529 | None:intergenic |
| TATGCACCAGGAGAAAGCCT+TGG | 0.557453 | 8.2:+20475167 | MS.gene033335:intron |
| CAAAACGGAATCAGCAACTA+GGG | 0.569243 | 8.2:-20473212 | None:intergenic |
| GAGTGTGACAATTGAAGCCA+TGG | 0.570854 | 8.2:+20476111 | MS.gene033335:CDS |
| ATCGCGTCAATGGCAAATGA+AGG | 0.573429 | 8.2:+20472963 | None:intergenic |
| CTCATGTAATACCGGAAGTG+TGG | 0.574056 | 8.2:-20476043 | None:intergenic |
| ATTCATTTCAGCTGGCCTGA+CGG | 0.578789 | 8.2:+20475991 | MS.gene033335:intron |
| AATAGGCTGAAAGTGTATGA+AGG | 0.580095 | 8.2:+20475450 | MS.gene033335:CDS |
| AAAGAGCATTCTTGGCATCA+GGG | 0.589008 | 8.2:-20476349 | None:intergenic |
| GAACATCTTGTTGTTTGAGG+AGG | 0.589500 | 8.2:-20473031 | None:intergenic |
| TACCAAGCAACCATTAAGCA+AGG | 0.592283 | 8.2:+20476371 | MS.gene033335:CDS |
| GTTTGAAGAAGGTGGTGACT+GGG | 0.592873 | 8.2:+20475419 | MS.gene033335:CDS |
| TTCGAGTGGACATGCAGTAG+AGG | 0.594533 | 8.2:-20475473 | None:intergenic |
| GCTGCAATGTATAGAATACC+AGG | 0.602890 | 8.2:-20475242 | None:intergenic |
| GGAGGAAAAGCTTGTCGGCG+AGG | 0.605693 | 8.2:-20473013 | None:intergenic |
| CACTCGAAATTTCGAGAAGG+CGG | 0.611108 | 8.2:+20475488 | MS.gene033335:CDS |
| CGCCTTCTCGAAATTTCGAG+TGG | 0.620270 | 8.2:-20475487 | None:intergenic |
| TTGTCGGCGAGGACAAGTTG+TGG | 0.627071 | 8.2:-20473002 | None:intergenic |
| AAAAGCGTTTGGAGTATCTG+TGG | 0.655763 | 8.2:+20476135 | MS.gene033335:CDS |
| GGAAGTGTGGATGCAAATAG+CGG | 0.661860 | 8.2:-20476030 | None:intergenic |
| AGGTGAGAGTGAAGTTCGTG+AGG | 0.662611 | 8.2:+20475027 | MS.gene033335:CDS |
| GTCCACTCGAAATTTCGAGA+AGG | 0.663292 | 8.2:+20475485 | MS.gene033335:CDS |
| AGTTGGGCAGAAGATGGACC+TGG | 0.674047 | 8.2:+20475224 | MS.gene033335:CDS |
| GACAGCTTGTTTGAAGAAGG+TGG | 0.675197 | 8.2:+20475411 | MS.gene033335:intron |
| GAGCATTCTTGGCATCAGGG+CGG | 0.729040 | 8.2:-20476346 | None:intergenic |
| GATGGAATCCAAGAACAATG+TGG | 0.760047 | 8.2:-20475511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATAAATACATATCTTAA+TGG | + | chr8.2:20474324-20474343 | MS.gene033335:intron | 15.0% |
| !!! | TATAATTTTCTGTTAAGAAT+GGG | + | chr8.2:20475365-20475384 | MS.gene033335:intron | 15.0% |
| !! | AAAATCCAAAATTCACAATT+GGG | - | chr8.2:20473342-20473361 | None:intergenic | 20.0% |
| !! | ATATATCCTAGAAAGATTAA+TGG | - | chr8.2:20474738-20474757 | None:intergenic | 20.0% |
| !! | ATTACATATATTTGTTTCCA+GGG | + | chr8.2:20476250-20476269 | MS.gene033335:intron | 20.0% |
| !! | CAATATGTAAAAATAAACTC+TGG | - | chr8.2:20473950-20473969 | None:intergenic | 20.0% |
| !! | TATATCCTAGAAAGATTAAT+GGG | - | chr8.2:20474737-20474756 | None:intergenic | 20.0% |
| !! | TGAAAAACAAAAGCAAATTA+GGG | - | chr8.2:20473168-20473187 | None:intergenic | 20.0% |
| !! | TGAAGAAAATTTGTATAGTA+GGG | + | chr8.2:20473380-20473399 | MS.gene033335:intron | 20.0% |
| !! | TTAACAGAAAATTATAGCAA+AGG | - | chr8.2:20475361-20475380 | None:intergenic | 20.0% |
| !! | TTGAAGAAAATTTGTATAGT+AGG | + | chr8.2:20473379-20473398 | MS.gene033335:intron | 20.0% |
| !! | TTGAATTGTACTAATGTATT+TGG | + | chr8.2:20473452-20473471 | MS.gene033335:intron | 20.0% |
| !!! | ACAACTTATTCATCATTTTT+AGG | - | chr8.2:20474200-20474219 | None:intergenic | 20.0% |
| !!! | CTATAATTTTCTGTTAAGAA+TGG | + | chr8.2:20475364-20475383 | MS.gene033335:intron | 20.0% |
| !!! | TAAAATATAAAGGTGTCATA+GGG | - | chr8.2:20475564-20475583 | None:intergenic | 20.0% |
| ! | AAAAAGTTCATAGGTAGTAA+AGG | - | chr8.2:20475541-20475560 | None:intergenic | 25.0% |
| ! | AAATCCAAAATTCACAATTG+GGG | - | chr8.2:20473341-20473360 | None:intergenic | 25.0% |
| ! | AGAAAAGATAAATGGTGTAA+AGG | - | chr8.2:20475665-20475684 | None:intergenic | 25.0% |
| ! | ATGTAGAGTGAAGAAAATTA+GGG | - | chr8.2:20473142-20473161 | None:intergenic | 25.0% |
| ! | CAAAAACCAGTAAAACATTT+AGG | - | chr8.2:20473495-20473514 | None:intergenic | 25.0% |
| ! | CAAAACGGTGTAAAATATAA+AGG | - | chr8.2:20475574-20475593 | None:intergenic | 25.0% |
| ! | CAAAATCCAAAATTCACAAT+TGG | - | chr8.2:20473343-20473362 | None:intergenic | 25.0% |
| ! | CATTACATATATTTGTTTCC+AGG | + | chr8.2:20476249-20476268 | MS.gene033335:intron | 25.0% |
| ! | CGGTTAAAAGAAAAGATAAA+TGG | - | chr8.2:20475673-20475692 | None:intergenic | 25.0% |
| ! | GTGAAAAACAAAAGCAAATT+AGG | - | chr8.2:20473169-20473188 | None:intergenic | 25.0% |
| ! | TATAGAACTAAGCTTATAGT+TGG | + | chr8.2:20474252-20474271 | MS.gene033335:intron | 25.0% |
| ! | TATGTAGAGTGAAGAAAATT+AGG | - | chr8.2:20473143-20473162 | None:intergenic | 25.0% |
| ! | TGATTAGATTACAATGTTGT+GGG | + | chr8.2:20476218-20476237 | MS.gene033335:intron | 25.0% |
| ! | TTAAACAACCAAGAAAGAAA+AGG | + | chr8.2:20474300-20474319 | MS.gene033335:intron | 25.0% |
| ! | TTGATTAGATTACAATGTTG+TGG | + | chr8.2:20476217-20476236 | MS.gene033335:intron | 25.0% |
| ! | TTTACATGATGCTATATCAT+TGG | - | chr8.2:20474352-20474371 | None:intergenic | 25.0% |
| !! | AAATAATAGTTTGTATCTCG+AGG | - | chr8.2:20474922-20474941 | None:intergenic | 25.0% |
| !! | AATTCTAGAGATTCTTGAAT+AGG | - | chr8.2:20473711-20473730 | None:intergenic | 25.0% |
| !! | ATTCTAGAGATTCTTGAATA+GGG | - | chr8.2:20473710-20473729 | None:intergenic | 25.0% |
| !! | TCATATGAATGTCTCATTTT+AGG | + | chr8.2:20474981-20475000 | MS.gene033335:intron | 25.0% |
| !! | TTATTGATCCTTTTCTTTCT+TGG | - | chr8.2:20474311-20474330 | None:intergenic | 25.0% |
| !! | TTTGTTCCTAAATGTTTTAC+TGG | + | chr8.2:20473486-20473505 | MS.gene033335:intron | 25.0% |
| !!! | ACTATAAGCTTAGTTCTATA+TGG | - | chr8.2:20474252-20474271 | None:intergenic | 25.0% |
| !!! | ATTTTGAAATTCATTTCAGC+TGG | + | chr8.2:20475983-20476002 | MS.gene033335:intron | 25.0% |
| !!! | CAAAATCCTTATTTTTCATC+CGG | + | chr8.2:20475059-20475078 | MS.gene033335:CDS | 25.0% |
| !!! | GTAAAATATAAAGGTGTCAT+AGG | - | chr8.2:20475565-20475584 | None:intergenic | 25.0% |
| !!! | TAGAAGTACCTTTTGTTTTA+AGG | - | chr8.2:20475625-20475644 | None:intergenic | 25.0% |
| !!! | TATTTTTACATATTGTGACC+TGG | + | chr8.2:20473955-20473974 | MS.gene033335:intron | 25.0% |
| AAACGAAAAACCAAGTGATT+TGG | - | chr8.2:20476189-20476208 | None:intergenic | 30.0% | |
| AAATCGACATATGATCTGAA+TGG | - | chr8.2:20473801-20473820 | None:intergenic | 30.0% | |
| AACGAAAAACCAAGTGATTT+GGG | - | chr8.2:20476188-20476207 | None:intergenic | 30.0% | |
| AAGTACAAAACCTAGAATAC+TGG | + | chr8.2:20474830-20474849 | MS.gene033335:intron | 30.0% | |
| ACCAAGAAATAACAGAACAA+CGG | - | chr8.2:20475693-20475712 | None:intergenic | 30.0% | |
| AGTACAAAACCTAGAATACT+GGG | + | chr8.2:20474831-20474850 | MS.gene033335:intron | 30.0% | |
| AGTATAATGAGTCTTTGTTG+GGG | + | chr8.2:20473843-20473862 | MS.gene033335:intron | 30.0% | |
| ATAGGCTAAATTTCATCCAT+CGG | - | chr8.2:20474694-20474713 | None:intergenic | 30.0% | |
| CAGAGTTTCCTTAAAACAAA+AGG | + | chr8.2:20475614-20475633 | MS.gene033335:CDS | 30.0% | |
| CTTGTAAGATTCCAAAAACT+GGG | - | chr8.2:20476092-20476111 | None:intergenic | 30.0% | |
| GAACATAGAAGCAAAAAGAT+AGG | - | chr8.2:20475950-20475969 | None:intergenic | 30.0% | |
| GAGTATAATGAGTCTTTGTT+GGG | + | chr8.2:20473842-20473861 | MS.gene033335:intron | 30.0% | |
| GTGAAGAAAATTAGGGTTTA+CGG | - | chr8.2:20473135-20473154 | None:intergenic | 30.0% | |
| TATGAACTATCGTTAGTACA+AGG | - | chr8.2:20474966-20474985 | None:intergenic | 30.0% | |
| TCTTACCCATTAATCTTTCT+AGG | + | chr8.2:20474729-20474748 | MS.gene033335:intron | 30.0% | |
| TCTTGTAAGATTCCAAAAAC+TGG | - | chr8.2:20476093-20476112 | None:intergenic | 30.0% | |
| TGAGTATAATGAGTCTTTGT+TGG | + | chr8.2:20473841-20473860 | MS.gene033335:intron | 30.0% | |
| TGCAATTAATATGACACATC+TGG | - | chr8.2:20474881-20474900 | None:intergenic | 30.0% | |
| TGTAAGATTGATAAAGTTGC+AGG | + | chr8.2:20476308-20476327 | MS.gene033335:CDS | 30.0% | |
| TGTTATTATGCTGGTCAAAA+CGG | - | chr8.2:20475589-20475608 | None:intergenic | 30.0% | |
| TTTGACCAGCATAATAACAT+TGG | + | chr8.2:20475590-20475609 | MS.gene033335:CDS | 30.0% | |
| ! | ACTGTTTCTTTCCTTGATTA+TGG | - | chr8.2:20474145-20474164 | None:intergenic | 30.0% |
| ! | AGATGTTTTCAATTTCGTCA+AGG | + | chr8.2:20473082-20473101 | MS.gene033335:CDS | 30.0% |
| ! | ATCAAGGAAAGAAACAGTTT+TGG | + | chr8.2:20474147-20474166 | MS.gene033335:intron | 30.0% |
| ! | CAAAACTTTCATTTTCACTC+TGG | + | chr8.2:20474488-20474507 | MS.gene033335:intron | 30.0% |
| ! | CAGAGTGAAAATGAAAGTTT+TGG | - | chr8.2:20474490-20474509 | None:intergenic | 30.0% |
| ! | CTTGTATTGACAACCATATA+AGG | - | chr8.2:20475814-20475833 | None:intergenic | 30.0% |
| ! | TCCACATCTTAAAGAGTTTT+TGG | + | chr8.2:20475785-20475804 | MS.gene033335:CDS | 30.0% |
| ! | TTAACCCCAATTGTGAATTT+TGG | + | chr8.2:20473334-20473353 | MS.gene033335:intron | 30.0% |
| ! | TTAACTGACTAATTTGCATC+AGG | + | chr8.2:20475722-20475741 | MS.gene033335:intron | 30.0% |
| ! | TTTTGGATTTTGAATGCACT+AGG | + | chr8.2:20473351-20473370 | MS.gene033335:intron | 30.0% |
| !! | AAAGCATTGACAAAGCTAAA+AGG | + | chr8.2:20475301-20475320 | MS.gene033335:CDS | 30.0% |
| !! | CTTAGTTCTATATGGATGTA+TGG | - | chr8.2:20474244-20474263 | None:intergenic | 30.0% |
| !! | TAGAATCACTTTTGAAGATG+TGG | - | chr8.2:20474644-20474663 | None:intergenic | 30.0% |
| !! | TCCAAAAACTCTTTAAGATG+TGG | - | chr8.2:20475789-20475808 | None:intergenic | 30.0% |
| !! | TGTCATTTATTCCCAGTTTT+TGG | + | chr8.2:20476078-20476097 | MS.gene033335:CDS | 30.0% |
| !!! | TTTAGCTTTGTCAATGCTTT+TGG | - | chr8.2:20475301-20475320 | None:intergenic | 30.0% |
| AAAAACCCCAGAATAAGCAA+GGG | - | chr8.2:20473984-20474003 | None:intergenic | 35.0% | |
| AAATAGCAAAGCAACGAAGA+GGG | - | chr8.2:20474604-20474623 | None:intergenic | 35.0% | |
| AACTTCAATCAAACTGCTAG+AGG | - | chr8.2:20473744-20473763 | None:intergenic | 35.0% | |
| AAGTCTTTCTTCTCAGCATT+TGG | + | chr8.2:20475831-20475850 | MS.gene033335:CDS | 35.0% | |
| ACTTCAATCAAACTGCTAGA+GGG | - | chr8.2:20473743-20473762 | None:intergenic | 35.0% | |
| AGAACTAAGCTTATAGTTGG+AGG | + | chr8.2:20474255-20474274 | MS.gene033335:intron | 35.0% | |
| AGAATAATAACCGCAGAGAT+AGG | - | chr8.2:20474712-20474731 | None:intergenic | 35.0% | |
| AGAATAGAAAATGCAAAGGC+TGG | + | chr8.2:20474854-20474873 | MS.gene033335:intron | 35.0% | |
| ATAGGTAGTAAAGGTTGAGA+TGG | - | chr8.2:20475532-20475551 | None:intergenic | 35.0% | |
| CAACTAGGGTTTCGTATAAA+GGG | - | chr8.2:20473201-20473220 | None:intergenic | 35.0% | |
| CAGTGAAAAGATTACAACTC+AGG | + | chr8.2:20474801-20474820 | MS.gene033335:intron | 35.0% | |
| CATGGAAATCACCATAATCA+AGG | + | chr8.2:20474131-20474150 | MS.gene033335:intron | 35.0% | |
| GCAGTTTGATTGAAGTTGAA+TGG | + | chr8.2:20473747-20473766 | MS.gene033335:intron | 35.0% | |
| GTATAATGAGTCTTTGTTGG+GGG | + | chr8.2:20473844-20473863 | MS.gene033335:intron | 35.0% | |
| GTATTCTATACATTGCAGCT+TGG | + | chr8.2:20475246-20475265 | MS.gene033335:CDS | 35.0% | |
| GTCATAGGGAAAAAGTTCAT+AGG | - | chr8.2:20475550-20475569 | None:intergenic | 35.0% | |
| TAGGCTAAATTTCATCCATC+GGG | - | chr8.2:20474693-20474712 | None:intergenic | 35.0% | |
| TATATACCCAATGTCACCAA+TGG | + | chr8.2:20474053-20474072 | MS.gene033335:intron | 35.0% | |
| TCCAAACATACTTCTTTAGC+AGG | - | chr8.2:20473669-20473688 | None:intergenic | 35.0% | |
| TCTGTCCAATGTTATTATGC+TGG | - | chr8.2:20475598-20475617 | None:intergenic | 35.0% | |
| TCTTCAAACAAGCTGTCATA+TGG | - | chr8.2:20475408-20475427 | None:intergenic | 35.0% | |
| TGAAATTTAGCCTATCTCTG+CGG | + | chr8.2:20474699-20474718 | MS.gene033335:intron | 35.0% | |
| TGATCTCTCTCATGTAATAC+CGG | - | chr8.2:20476054-20476073 | None:intergenic | 35.0% | |
| TGGGAGAATAGAAAATGCAA+AGG | + | chr8.2:20474850-20474869 | MS.gene033335:intron | 35.0% | |
| TTAGATTACAATGTTGTGGG+AGG | + | chr8.2:20476221-20476240 | MS.gene033335:intron | 35.0% | |
| TTCAATTTCGTCAAGGAACA+TGG | + | chr8.2:20473089-20473108 | MS.gene033335:CDS | 35.0% | |
| TTCTATTCTCCCAGTATTCT+AGG | - | chr8.2:20474843-20474862 | None:intergenic | 35.0% | |
| ! | AATAGGCTGAAAGTGTATGA+AGG | + | chr8.2:20475450-20475469 | MS.gene033335:CDS | 35.0% |
| ! | ATTTTCATCTGTCAGCTCAA+AGG | - | chr8.2:20474454-20474473 | None:intergenic | 35.0% |
| ! | TATGACAGCTTGTTTGAAGA+AGG | + | chr8.2:20475408-20475427 | MS.gene033335:intron | 35.0% |
| ! | TCCTGCTAAAGAAGTATGTT+TGG | + | chr8.2:20473665-20473684 | MS.gene033335:intron | 35.0% |
| !! | ACCGTTGTTCTGTTATTTCT+TGG | + | chr8.2:20475689-20475708 | MS.gene033335:intron | 35.0% |
| !! | ATCATCAATTTTAGCACGCA+TGG | - | chr8.2:20473263-20473282 | None:intergenic | 35.0% |
| !! | CTTATTTTTCATCCGGATTG+GGG | + | chr8.2:20475066-20475085 | MS.gene033335:CDS | 35.0% |
| !! | CTTGAACATCTTGTTGTTTG+AGG | - | chr8.2:20473037-20473056 | None:intergenic | 35.0% |
| !! | GAGTTTTTGGACTCCTTATA+TGG | + | chr8.2:20475798-20475817 | MS.gene033335:CDS | 35.0% |
| !!! | CCTTATTTTTCATCCGGATT+GGG | + | chr8.2:20475065-20475084 | MS.gene033335:CDS | 35.0% |
| !!! | GCTTTTGTTTTTCACAGACA+TGG | + | chr8.2:20473174-20473193 | MS.gene033335:intron | 35.0% |
| !!! | TCCTTATTTTTCATCCGGAT+TGG | + | chr8.2:20475064-20475083 | MS.gene033335:CDS | 35.0% |
| !!! | TGTTTTGAGGCTAGCTATTA+TGG | - | chr8.2:20474090-20474109 | None:intergenic | 35.0% |
| AAACCAAGACTGTTGCAGTT+GGG | + | chr8.2:20475208-20475227 | MS.gene033335:CDS | 40.0% | |
| AAGGAGACTTCTTGTTGAAC+AGG | + | chr8.2:20476390-20476409 | MS.gene033335:CDS | 40.0% | |
| ACATTGCAGCTTGGTTTCTT+TGG | + | chr8.2:20475255-20475274 | MS.gene033335:CDS | 40.0% | |
| ATTCTTGAATAGGGAACACG+TGG | - | chr8.2:20473701-20473720 | None:intergenic | 40.0% | |
| CAAAACGGAATCAGCAACTA+GGG | - | chr8.2:20473215-20473234 | None:intergenic | 40.0% | |
| CAAATAGCAAAGCAACGAAG+AGG | - | chr8.2:20474605-20474624 | None:intergenic | 40.0% | |
| CAAGAAGTCTCCTTGCTTAA+TGG | - | chr8.2:20476384-20476403 | None:intergenic | 40.0% | |
| CAATGTCACCAATGGCTTAT+GGG | + | chr8.2:20474061-20474080 | MS.gene033335:intron | 40.0% | |
| CATGACATCTACCATTCACT+GGG | - | chr8.2:20474115-20474134 | None:intergenic | 40.0% | |
| CCCAATCCGGATGAAAAATA+AGG | - | chr8.2:20475068-20475087 | None:intergenic | 40.0% | |
| CTTCAATCAAACTGCTAGAG+GGG | - | chr8.2:20473742-20473761 | None:intergenic | 40.0% | |
| GAAAAACCCCAGAATAAGCA+AGG | - | chr8.2:20473985-20474004 | None:intergenic | 40.0% | |
| GACACGATCCATATCCAAAA+CGG | - | chr8.2:20473230-20473249 | None:intergenic | 40.0% | |
| GATGGAATCCAAGAACAATG+TGG | - | chr8.2:20475514-20475533 | None:intergenic | 40.0% | |
| GCAACTAGGGTTTCGTATAA+AGG | - | chr8.2:20473202-20473221 | None:intergenic | 40.0% | |
| GCTGCAATGTATAGAATACC+AGG | - | chr8.2:20475245-20475264 | None:intergenic | 40.0% | |
| TACCAAGCAACCATTAAGCA+AGG | + | chr8.2:20476371-20476390 | MS.gene033335:CDS | 40.0% | |
| TCAATCACTGTCAAGATCTC+AGG | - | chr8.2:20475759-20475778 | None:intergenic | 40.0% | |
| TGAATGCATCCCAAATCACT+TGG | + | chr8.2:20476176-20476195 | MS.gene033335:intron | 40.0% | |
| TGTTATCTTGAGATGCTCCA+AGG | - | chr8.2:20475187-20475206 | None:intergenic | 40.0% | |
| TTCAATCAAACTGCTAGAGG+GGG | - | chr8.2:20473741-20473760 | None:intergenic | 40.0% | |
| TTTGAGGAGGAAAAGCTTGT+CGG | - | chr8.2:20473021-20473040 | None:intergenic | 40.0% | |
| ! | ACTCTCACCTAAGTTTTCCT+CGG | - | chr8.2:20475017-20475036 | None:intergenic | 40.0% |
| ! | CAAAGGCTGGTGATTTTTCA+GGG | - | chr8.2:20474437-20474456 | None:intergenic | 40.0% |
| ! | CATAAGCCATTGGTGACATT+GGG | - | chr8.2:20474062-20474081 | None:intergenic | 40.0% |
| ! | GACTAATTTGCATCAGGTAG+TGG | + | chr8.2:20475728-20475747 | MS.gene033335:intron | 40.0% |
| ! | TATCACGTTTTATCGCAGCT+GGG | + | chr8.2:20476276-20476295 | MS.gene033335:CDS | 40.0% |
| ! | TCAAAGGCTGGTGATTTTTC+AGG | - | chr8.2:20474438-20474457 | None:intergenic | 40.0% |
| ! | TTTCTTTTCCTTTCTGCTGC+TGG | + | chr8.2:20475123-20475142 | MS.gene033335:intron | 40.0% |
| ! | TTTGAGGCTAGCTATTATGG+TGG | - | chr8.2:20474087-20474106 | None:intergenic | 40.0% |
| !! | AAAAGCGTTTGGAGTATCTG+TGG | + | chr8.2:20476135-20476154 | MS.gene033335:CDS | 40.0% |
| !! | AAAGAGCATTCTTGGCATCA+GGG | - | chr8.2:20476352-20476371 | None:intergenic | 40.0% |
| !! | CTCTTCGTTGCTTTGCTATT+TGG | + | chr8.2:20474603-20474622 | MS.gene033335:intron | 40.0% |
| !! | GAACATCTTGTTGTTTGAGG+AGG | - | chr8.2:20473034-20473053 | None:intergenic | 40.0% |
| !! | TAAAGAGCATTCTTGGCATC+AGG | - | chr8.2:20476353-20476372 | None:intergenic | 40.0% |
| !! | TGCTTGGTAAAGAGCATTCT+TGG | - | chr8.2:20476360-20476379 | None:intergenic | 40.0% |
| !!! | TGCTGATTCCGTTTTGGATA+TGG | + | chr8.2:20473219-20473238 | MS.gene033335:CDS | 40.0% |
| ACTGTAGGACATCTTCAGTC+TGG | - | chr8.2:20474578-20474597 | None:intergenic | 45.0% | |
| ACTTGATTCCAGCAGCAGAA+AGG | - | chr8.2:20475134-20475153 | None:intergenic | 45.0% | |
| CACTCGAAATTTCGAGAAGG+CGG | + | chr8.2:20475488-20475507 | MS.gene033335:CDS | 45.0% | |
| CCAAAACGGAATCAGCAACT+AGG | - | chr8.2:20473216-20473235 | None:intergenic | 45.0% | |
| CCAATGTCACCAATGGCTTA+TGG | + | chr8.2:20474060-20474079 | MS.gene033335:intron | 45.0% | |
| CCAGTGAATGGTAGATGTCA+TGG | + | chr8.2:20474113-20474132 | MS.gene033335:intron | 45.0% | |
| CCATCGGGAATTCTAAGTTC+AGG | - | chr8.2:20474678-20474697 | None:intergenic | 45.0% | |
| CCATGACATCTACCATTCAC+TGG | - | chr8.2:20474116-20474135 | None:intergenic | 45.0% | |
| CCTGAACTTAGAATTCCCGA+TGG | + | chr8.2:20474675-20474694 | MS.gene033335:intron | 45.0% | |
| CCTGACGGAGCAAATTAAGT+TGG | + | chr8.2:20476006-20476025 | MS.gene033335:CDS | 45.0% | |
| CTCAAAACATGCCCAGTGAA+TGG | + | chr8.2:20474101-20474120 | MS.gene033335:intron | 45.0% | |
| CTCATGTAATACCGGAAGTG+TGG | - | chr8.2:20476046-20476065 | None:intergenic | 45.0% | |
| CTCCTTGCTTAATGGTTGCT+TGG | - | chr8.2:20476376-20476395 | None:intergenic | 45.0% | |
| GAAACCAAGACTGTTGCAGT+TGG | + | chr8.2:20475207-20475226 | MS.gene033335:CDS | 45.0% | |
| GAGTGTGACAATTGAAGCCA+TGG | + | chr8.2:20476111-20476130 | MS.gene033335:CDS | 45.0% | |
| GATAAAACGTGATAGCTCCC+TGG | - | chr8.2:20476270-20476289 | None:intergenic | 45.0% | |
| GCTATTTGCATCCACACTTC+CGG | + | chr8.2:20476032-20476051 | MS.gene033335:CDS | 45.0% | |
| GTCCACTCGAAATTTCGAGA+AGG | + | chr8.2:20475485-20475504 | MS.gene033335:CDS | 45.0% | |
| GTGACTGGGAAAGGAAGAAT+AGG | + | chr8.2:20475433-20475452 | MS.gene033335:CDS | 45.0% | |
| GTTTGAAGAAGGTGGTGACT+GGG | + | chr8.2:20475419-20475438 | MS.gene033335:CDS | 45.0% | |
| TACATACCTTGTCCCCAATC+CGG | - | chr8.2:20475081-20475100 | None:intergenic | 45.0% | |
| TGGTCACCCTTGCTTATTCT+GGG | + | chr8.2:20473975-20473994 | MS.gene033335:intron | 45.0% | |
| TGTTTGAAGAAGGTGGTGAC+TGG | + | chr8.2:20475418-20475437 | MS.gene033335:CDS | 45.0% | |
| ! | AGTGAGGTGGACATTGACTA+TGG | - | chr8.2:20474533-20474552 | None:intergenic | 45.0% |
| ! | ATTCATTTCAGCTGGCCTGA+CGG | + | chr8.2:20475991-20476010 | MS.gene033335:intron | 45.0% |
| ! | CATTCACTGGGCATGTTTTG+AGG | - | chr8.2:20474103-20474122 | None:intergenic | 45.0% |
| ! | CATTTTCACTCTGGCAGAGA+AGG | + | chr8.2:20474497-20474516 | MS.gene033335:intron | 45.0% |
| ! | CCATAAGCCATTGGTGACAT+TGG | - | chr8.2:20474063-20474082 | None:intergenic | 45.0% |
| ! | CTATCACGTTTTATCGCAGC+TGG | + | chr8.2:20476275-20476294 | MS.gene033335:CDS | 45.0% |
| ! | GACAGCTTGTTTGAAGAAGG+TGG | + | chr8.2:20475411-20475430 | MS.gene033335:intron | 45.0% |
| ! | GGAAGTGTGGATGCAAATAG+CGG | - | chr8.2:20476033-20476052 | None:intergenic | 45.0% |
| ! | GGATATGGATCGTGTCCTTT+TGG | + | chr8.2:20473234-20473253 | MS.gene033335:CDS | 45.0% |
| ! | TACTCCAAACGCTTTTGCCA+TGG | - | chr8.2:20476131-20476150 | None:intergenic | 45.0% |
| !! | CCAACTTAATTTGCTCCGTC+AGG | - | chr8.2:20476009-20476028 | None:intergenic | 45.0% |
| !!! | CCTAGTTGCTGATTCCGTTT+TGG | + | chr8.2:20473213-20473232 | MS.gene033335:CDS | 45.0% |
| !!! | GGTGATTTTTCAGGGCACAA+CGG | - | chr8.2:20474429-20474448 | None:intergenic | 45.0% |
| !!! | TTTTAGGATTGCTGATGCCG+AGG | + | chr8.2:20474997-20475016 | MS.gene033335:intron | 45.0% |
| AACACTGTCCTCTATGCACC+AGG | + | chr8.2:20475155-20475174 | MS.gene033335:intron | 50.0% | |
| AAGAAGGTGGTGACTGGGAA+AGG | + | chr8.2:20475424-20475443 | MS.gene033335:CDS | 50.0% | |
| AATGTCCACCTCACTTGAGG+AGG | + | chr8.2:20474538-20474557 | MS.gene033335:intron | 50.0% | |
| AGGGTTTACGGAGAGAGAAG+AGG | - | chr8.2:20473123-20473142 | None:intergenic | 50.0% | |
| AGGTGAGAGTGAAGTTCGTG+AGG | + | chr8.2:20475027-20475046 | MS.gene033335:CDS | 50.0% | |
| CAACGAAGAGGGTTCACTGT+AGG | - | chr8.2:20474593-20474612 | None:intergenic | 50.0% | |
| CAGAATAAGCAAGGGTGACC+AGG | - | chr8.2:20473976-20473995 | None:intergenic | 50.0% | |
| CGATCACACGAGACAGTTTC+TGG | - | chr8.2:20476418-20476437 | None:intergenic | 50.0% | |
| CGCCTTCTCGAAATTTCGAG+TGG | - | chr8.2:20475490-20475509 | None:intergenic | 50.0% | |
| CTGGTCACCCTTGCTTATTC+TGG | + | chr8.2:20473974-20473993 | MS.gene033335:intron | 50.0% | |
| GCAGCTTGGTTTCTTTGGCA+TGG | + | chr8.2:20475260-20475279 | MS.gene033335:CDS | 50.0% | |
| GCTGATGCCGAGGAAAACTT+AGG | + | chr8.2:20475007-20475026 | MS.gene033335:CDS | 50.0% | |
| GGGTTTACGGAGAGAGAAGA+GGG | - | chr8.2:20473122-20473141 | None:intergenic | 50.0% | |
| GGTCACCCTTGCTTATTCTG+GGG | + | chr8.2:20473976-20473995 | MS.gene033335:intron | 50.0% | |
| GTCAATGTCCACCTCACTTG+AGG | + | chr8.2:20474535-20474554 | MS.gene033335:intron | 50.0% | |
| TAGCACGCATGGAGTCCAAA+AGG | - | chr8.2:20473252-20473271 | None:intergenic | 50.0% | |
| TATGCACCAGGAGAAAGCCT+TGG | + | chr8.2:20475167-20475186 | MS.gene033335:intron | 50.0% | |
| TATGGTGGCCCATAAGCCAT+TGG | - | chr8.2:20474072-20474091 | None:intergenic | 50.0% | |
| TCATCTGTCAGCTCAAAGGC+TGG | - | chr8.2:20474450-20474469 | None:intergenic | 50.0% | |
| TGAAGTTCGTGAGGCTCACT+TGG | + | chr8.2:20475036-20475055 | MS.gene033335:CDS | 50.0% | |
| TGTTGCAGTTGGGCAGAAGA+TGG | + | chr8.2:20475218-20475237 | MS.gene033335:CDS | 50.0% | |
| TTCGAGTGGACATGCAGTAG+AGG | - | chr8.2:20475476-20475495 | None:intergenic | 50.0% | |
| ! | TTTCATCCGGATTGGGGACA+AGG | + | chr8.2:20475072-20475091 | MS.gene033335:CDS | 50.0% |
| !! | GAAGCCATGGCAAAAGCGTT+TGG | + | chr8.2:20476124-20476143 | MS.gene033335:CDS | 50.0% |
| AGTTGGGCAGAAGATGGACC+TGG | + | chr8.2:20475224-20475243 | MS.gene033335:CDS | 55.0% | |
| CATTGCAGCCTCCTCAAGTG+AGG | - | chr8.2:20474549-20474568 | None:intergenic | 55.0% | |
| CTGCCCAACTGCAACAGTCT+TGG | - | chr8.2:20475214-20475233 | None:intergenic | 55.0% | |
| GAAGGCGGCCACATTGTTCT+TGG | + | chr8.2:20475503-20475522 | MS.gene033335:CDS | 55.0% | |
| GAGCATTCTTGGCATCAGGG+CGG | - | chr8.2:20476349-20476368 | None:intergenic | 55.0% | |
| GATGCTCCAAGGCTTTCTCC+TGG | - | chr8.2:20475176-20475195 | None:intergenic | 55.0% | |
| GGCTTTCTCCTGGTGCATAG+AGG | - | chr8.2:20475166-20475185 | None:intergenic | 55.0% | |
| TTGTCGGCGAGGACAAGTTG+TGG | - | chr8.2:20473005-20473024 | None:intergenic | 55.0% | |
| GGAGGAAAAGCTTGTCGGCG+AGG | - | chr8.2:20473016-20473035 | None:intergenic | 60.0% | |
| TGCAGCCTCCTCAAGTGAGG+TGG | - | chr8.2:20474546-20474565 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 20472972 | 20476445 | 20472972 | ID=MS.gene033335 |
| chr8.2 | mRNA | 20472972 | 20476445 | 20472972 | ID=MS.gene033335.t1;Parent=MS.gene033335 |
| chr8.2 | exon | 20472972 | 20473110 | 20472972 | ID=MS.gene033335.t1.exon1;Parent=MS.gene033335.t1 |
| chr8.2 | CDS | 20472972 | 20473110 | 20472972 | ID=cds.MS.gene033335.t1;Parent=MS.gene033335.t1 |
| chr8.2 | exon | 20473191 | 20473305 | 20473191 | ID=MS.gene033335.t1.exon2;Parent=MS.gene033335.t1 |
| chr8.2 | CDS | 20473191 | 20473305 | 20473191 | ID=cds.MS.gene033335.t1;Parent=MS.gene033335.t1 |
| chr8.2 | exon | 20475003 | 20475093 | 20475003 | ID=MS.gene033335.t1.exon3;Parent=MS.gene033335.t1 |
| chr8.2 | CDS | 20475003 | 20475093 | 20475003 | ID=cds.MS.gene033335.t1;Parent=MS.gene033335.t1 |
| chr8.2 | exon | 20475177 | 20475322 | 20475177 | ID=MS.gene033335.t1.exon4;Parent=MS.gene033335.t1 |
| chr8.2 | CDS | 20475177 | 20475322 | 20475177 | ID=cds.MS.gene033335.t1;Parent=MS.gene033335.t1 |
| chr8.2 | exon | 20475416 | 20475635 | 20475416 | ID=MS.gene033335.t1.exon5;Parent=MS.gene033335.t1 |
| chr8.2 | CDS | 20475416 | 20475635 | 20475416 | ID=cds.MS.gene033335.t1;Parent=MS.gene033335.t1 |
| chr8.2 | exon | 20475744 | 20475852 | 20475744 | ID=MS.gene033335.t1.exon6;Parent=MS.gene033335.t1 |
| chr8.2 | CDS | 20475744 | 20475852 | 20475744 | ID=cds.MS.gene033335.t1;Parent=MS.gene033335.t1 |
| chr8.2 | exon | 20476002 | 20476170 | 20476002 | ID=MS.gene033335.t1.exon7;Parent=MS.gene033335.t1 |
| chr8.2 | CDS | 20476002 | 20476170 | 20476002 | ID=cds.MS.gene033335.t1;Parent=MS.gene033335.t1 |
| chr8.2 | exon | 20476271 | 20476445 | 20476271 | ID=MS.gene033335.t1.exon8;Parent=MS.gene033335.t1 |
| chr8.2 | CDS | 20476271 | 20476445 | 20476271 | ID=cds.MS.gene033335.t1;Parent=MS.gene033335.t1 |
| Gene Sequence |
| Protein sequence |
