Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40486.t1 | XP_003610773.1 | 100 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 2.70E-110 | 407.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40486.t1 | O23714 | 88.9 | 198 | 22 | 0 | 1 | 198 | 1 | 198 | 1.4e-99 | 363.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40486.t1 | G7K3S8 | 100.0 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 2.0e-110 | 407.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40486.t1 | MTR_5g006840 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 5.80e-153 | 422 |
| MS.gene40486.t1 | MTR_5g012470 | 96.000 | 200 | 8 | 0 | 1 | 200 | 1 | 200 | 1.27e-145 | 403 |
| MS.gene40486.t1 | MTR_2g050000 | 95.413 | 109 | 3 | 1 | 95 | 203 | 2 | 108 | 1.31e-71 | 213 |
| MS.gene40486.t1 | MTR_1g112250 | 30.464 | 151 | 94 | 3 | 13 | 155 | 45 | 192 | 8.39e-13 | 65.5 |
| MS.gene40486.t1 | MTR_3g109210 | 26.087 | 161 | 117 | 1 | 3 | 163 | 15 | 173 | 1.72e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40486.t1 | AT3G22630 | 87.129 | 202 | 26 | 0 | 1 | 202 | 1 | 202 | 6.55e-135 | 376 |
| MS.gene40486.t1 | AT4G14800 | 87.374 | 198 | 25 | 0 | 1 | 198 | 1 | 198 | 7.00e-132 | 369 |
| MS.gene40486.t1 | AT4G14800 | 80.841 | 214 | 25 | 1 | 1 | 198 | 1 | 214 | 2.21e-127 | 358 |
| MS.gene40486.t1 | AT3G14290 | 31.126 | 151 | 93 | 3 | 13 | 155 | 45 | 192 | 3.05e-13 | 66.6 |
Find 41 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTTGATAAGTGCATTT+TGG | 0.220132 | 5.3:+1858574 | MS.gene40486:CDS |
| CTTTGTATCAATTCCGTAAT+GGG | 0.276520 | 5.3:+1855491 | MS.gene40486:CDS |
| TTTGAATGTATTCAGTAAAC+TGG | 0.314079 | 5.3:-1855459 | None:intergenic |
| AAGCTTGAAAAGGGAGCTTT+TGG | 0.328358 | 5.3:+1858476 | MS.gene40486:CDS |
| TCTGTGAACATCCTTCTTGC+TGG | 0.377484 | 5.3:+1858395 | MS.gene40486:CDS |
| GCTTTGTATCAATTCCGTAA+TGG | 0.426748 | 5.3:+1855490 | MS.gene40486:CDS |
| AGAAGGATGTTCACAGAGTA+GGG | 0.434546 | 5.3:-1858389 | None:intergenic |
| GACACTTCACAAGCTTGAAA+AGG | 0.445538 | 5.3:+1858466 | MS.gene40486:CDS |
| CTAGCGGTGAACCCGGTGAC+AGG | 0.462278 | 5.3:+1855347 | MS.gene40486:CDS |
| AAGAAGGATGTTCACAGAGT+AGG | 0.469415 | 5.3:-1858390 | None:intergenic |
| GAACATGATCTTGTCTTCGT+TGG | 0.478439 | 5.3:-1855299 | None:intergenic |
| TGGTGAGAGGAATCCCATTA+CGG | 0.502878 | 5.3:-1855504 | None:intergenic |
| TTTGGAAATCAGATCAAGGT+TGG | 0.503786 | 5.3:+1858592 | MS.gene40486:CDS |
| GGATTAAATCAAGCTGAAGC+AGG | 0.515437 | 5.3:-1858701 | None:intergenic |
| ACACTTCACAAGCTTGAAAA+GGG | 0.519514 | 5.3:+1858467 | MS.gene40486:CDS |
| AATCAGATCAAGGTTGGTTG+TGG | 0.521276 | 5.3:+1858598 | MS.gene40486:CDS |
| TGGTAATGGCTTCGCGATCG+TGG | 0.521317 | 5.3:+1855234 | MS.gene40486:CDS |
| GCTTGCCACCGCTCTTCGCA+AGG | 0.527948 | 5.3:+1855558 | MS.gene40486:CDS |
| CTTCCACGTTCATTCCGCTA+TGG | 0.534157 | 5.3:-1858541 | None:intergenic |
| GCTGGTTATGACAAAGAGAC+AGG | 0.546617 | 5.3:+1858413 | MS.gene40486:CDS |
| TAGTCAATGTAATATAGTGA+TGG | 0.549687 | 5.3:-1858437 | None:intergenic |
| TAATCCGAAAACGCATTCCA+TGG | 0.555612 | 5.3:-1855209 | None:intergenic |
| GCAGCAGCAGCTGTGGTGAG+AGG | 0.566652 | 5.3:-1855517 | None:intergenic |
| ATCGCTGCTAGCGGTGAACC+CGG | 0.569631 | 5.3:+1855340 | MS.gene40486:CDS |
| CTTTGTCATAACCAGCAAGA+AGG | 0.572175 | 5.3:-1858406 | None:intergenic |
| AGTCAATGTAATATAGTGAT+GGG | 0.575452 | 5.3:-1858436 | None:intergenic |
| AAGAGAGTGAAACCTGTCAC+CGG | 0.576291 | 5.3:-1855359 | None:intergenic |
| GAAATTAGCAGCAGCAGCTG+TGG | 0.588351 | 5.3:-1855524 | None:intergenic |
| GAATACCTTGCGAAGAGCGG+TGG | 0.614639 | 5.3:-1855563 | None:intergenic |
| TGCATGGCGCGAATCAGTCA+AGG | 0.620623 | 5.3:+1858673 | MS.gene40486:CDS |
| CTTCGTTGGATTTGTGAACG+AGG | 0.622483 | 5.3:-1855285 | None:intergenic |
| CTTCCATAGCGGAATGAACG+TGG | 0.622934 | 5.3:+1858538 | MS.gene40486:CDS |
| CACAAACTCATCGCTGCTAG+CGG | 0.629383 | 5.3:+1855331 | MS.gene40486:CDS |
| ATGGTGCAAGAGAGTATGCA+TGG | 0.636054 | 5.3:+1858657 | MS.gene40486:CDS |
| AGAGAGTGAAACCTGTCACC+GGG | 0.641820 | 5.3:-1855358 | None:intergenic |
| ATTGAATACCTTGCGAAGAG+CGG | 0.643228 | 5.3:-1855566 | None:intergenic |
| GCTGCTGCTAATTTCACTCG+TGG | 0.647526 | 5.3:+1855532 | MS.gene40486:CDS |
| CGATGAGTTTGTGTGAATCG+AGG | 0.648197 | 5.3:-1855321 | None:intergenic |
| GTGAACGAGGATGCTGTGAA+CGG | 0.695181 | 5.3:-1855272 | None:intergenic |
| TAATGGCTTCGCGATCGTGG+TGG | 0.707184 | 5.3:+1855237 | MS.gene40486:CDS |
| ATGGACAGACACTTCCATAG+CGG | 0.741310 | 5.3:+1858527 | MS.gene40486:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGAAAAAAAATAAAAAG+GGG | - | chr5.3:1856563-1856582 | None:intergenic | 10.0% |
| !!! | AATCTTTTTATTGATAATAA+AGG | - | chr5.3:1858107-1858126 | None:intergenic | 10.0% |
| !!! | ATTAAAATAGTCATAATTTT+GGG | - | chr5.3:1857344-1857363 | None:intergenic | 10.0% |
| !!! | TTATCAATAAAAAGATTTTT+TGG | + | chr5.3:1858110-1858129 | MS.gene40486:intron | 10.0% |
| !! | AAAATTAGGTAAACAAAAAA+AGG | - | chr5.3:1855603-1855622 | None:intergenic | 15.0% |
| !! | AAATTAGGTAAACAAAAAAA+GGG | - | chr5.3:1855602-1855621 | None:intergenic | 15.0% |
| !! | AATGTAAAGTGATTTATATT+TGG | - | chr5.3:1857191-1857210 | None:intergenic | 15.0% |
| !!! | AATAAAAAGATTTTTTGGAA+AGG | + | chr5.3:1858115-1858134 | MS.gene40486:intron | 15.0% |
| !!! | ACAATTTTTATAACAAAGTT+TGG | - | chr5.3:1858629-1858648 | None:intergenic | 15.0% |
| !!! | ATTAGGGTTTTAAAAAATTA+AGG | - | chr5.3:1856601-1856620 | None:intergenic | 15.0% |
| !!! | CAAAATTATGACTATTTTAA+TGG | + | chr5.3:1857343-1857362 | MS.gene40486:intron | 15.0% |
| !!! | CATTAAAATAGTCATAATTT+TGG | - | chr5.3:1857345-1857364 | None:intergenic | 15.0% |
| !!! | TATGTTATTTATCAATAAGT+AGG | + | chr5.3:1857963-1857982 | MS.gene40486:intron | 15.0% |
| !!! | TGTATTTTTTATTTCACTTT+TGG | + | chr5.3:1855732-1855751 | MS.gene40486:intron | 15.0% |
| !!! | TTACTAGTACTATATAATTT+TGG | + | chr5.3:1857411-1857430 | MS.gene40486:intron | 15.0% |
| !! | AAACAACAAAAAAAAAACCA+AGG | - | chr5.3:1857390-1857409 | None:intergenic | 20.0% |
| !! | AATATACACAACCAATAATA+CGG | - | chr5.3:1856973-1856992 | None:intergenic | 20.0% |
| !! | AATTAGGTAAACAAAAAAAG+GGG | - | chr5.3:1855601-1855620 | None:intergenic | 20.0% |
| !! | CTATTCAACACTAAATATTA+GGG | - | chr5.3:1855632-1855651 | None:intergenic | 20.0% |
| !! | CTCATTTGTCTTAATTTATA+TGG | + | chr5.3:1858022-1858041 | MS.gene40486:intron | 20.0% |
| !! | TAGATAATGATAGAACATTA+TGG | - | chr5.3:1856722-1856741 | None:intergenic | 20.0% |
| !! | TATTAGGGTTTGAAAAAATT+AGG | - | chr5.3:1855617-1855636 | None:intergenic | 20.0% |
| !! | TCTATTCAACACTAAATATT+AGG | - | chr5.3:1855633-1855652 | None:intergenic | 20.0% |
| !! | TGTTATAAAAATTGTTGACA+AGG | + | chr5.3:1858634-1858653 | MS.gene40486:CDS | 20.0% |
| !!! | AACACTAATCATCTTTTTAT+AGG | + | chr5.3:1858046-1858065 | MS.gene40486:intron | 20.0% |
| !!! | ATAATTGATTTTGACATGTT+TGG | + | chr5.3:1857035-1857054 | MS.gene40486:intron | 20.0% |
| !!! | ATATTTGGTTTTACTTTTAG+AGG | + | chr5.3:1856988-1857007 | MS.gene40486:intron | 20.0% |
| !!! | ATTTTTATAACAAAGTTTGG+AGG | - | chr5.3:1858626-1858645 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTTCACTTTTGG+AGG | + | chr5.3:1855735-1855754 | MS.gene40486:intron | 20.0% |
| !!! | GTAATTTTCCTTTGTTTTTT+TGG | - | chr5.3:1857770-1857789 | None:intergenic | 20.0% |
| !!! | TATTATTGGTTGTGTATATT+TGG | + | chr5.3:1856973-1856992 | MS.gene40486:intron | 20.0% |
| !!! | TTTTACATGAGATTTATGTT+TGG | - | chr5.3:1855920-1855939 | None:intergenic | 20.0% |
| ! | AAATACTGGATATATATGCT+TGG | - | chr5.3:1857532-1857551 | None:intergenic | 25.0% |
| ! | AAATAGGGTTTGAATGAAAT+GGG | + | chr5.3:1857925-1857944 | MS.gene40486:intron | 25.0% |
| ! | AAATATTACTAGTACTACCT+TGG | + | chr5.3:1857370-1857389 | MS.gene40486:intron | 25.0% |
| ! | AATACTGGATATATATGCTT+GGG | - | chr5.3:1857531-1857550 | None:intergenic | 25.0% |
| ! | AATTGAGATTTGACAAGTAT+TGG | + | chr5.3:1856295-1856314 | MS.gene40486:intron | 25.0% |
| ! | ACATACATAAACAATAATGC+AGG | - | chr5.3:1855965-1855984 | None:intergenic | 25.0% |
| ! | AGTCAATGTAATATAGTGAT+GGG | - | chr5.3:1858439-1858458 | None:intergenic | 25.0% |
| ! | AGTTTATTTACACGTGAATT+TGG | + | chr5.3:1858353-1858372 | MS.gene40486:intron | 25.0% |
| ! | ATAAAAATTGTTGACAAGGA+TGG | + | chr5.3:1858638-1858657 | MS.gene40486:CDS | 25.0% |
| ! | ATAAATTAAGACAAATGAGC+AGG | - | chr5.3:1858021-1858040 | None:intergenic | 25.0% |
| ! | ATATACACAACCAATAATAC+GGG | - | chr5.3:1856972-1856991 | None:intergenic | 25.0% |
| ! | ATTGAGATTTGACAAGTATT+GGG | + | chr5.3:1856296-1856315 | MS.gene40486:intron | 25.0% |
| ! | GTATAGATATATGTATGATG+AGG | - | chr5.3:1856640-1856659 | None:intergenic | 25.0% |
| ! | TAGTCAATGTAATATAGTGA+TGG | - | chr5.3:1858440-1858459 | None:intergenic | 25.0% |
| ! | TATTAAATACAATAAGTCGC+TGG | - | chr5.3:1856170-1856189 | None:intergenic | 25.0% |
| ! | TCTATAATAACAATGCAACA+TGG | - | chr5.3:1858328-1858347 | None:intergenic | 25.0% |
| ! | TTTGAATGTATTCAGTAAAC+TGG | - | chr5.3:1855462-1855481 | None:intergenic | 25.0% |
| !! | AATTCTTTTCGACAATTCTA+CGG | - | chr5.3:1858240-1858259 | None:intergenic | 25.0% |
| !! | AATTGATTCTAGCTAAAAGT+AGG | - | chr5.3:1857217-1857236 | None:intergenic | 25.0% |
| !! | AGCATATATATCCAGTATTT+TGG | + | chr5.3:1857532-1857551 | MS.gene40486:intron | 25.0% |
| !! | GGATTTAGTTTATGTCAATT+GGG | + | chr5.3:1856807-1856826 | MS.gene40486:intron | 25.0% |
| !! | TGGATTTAGTTTATGTCAAT+TGG | + | chr5.3:1856806-1856825 | MS.gene40486:intron | 25.0% |
| !!! | AAGGATAGTACTGATTATTA+GGG | - | chr5.3:1856617-1856636 | None:intergenic | 25.0% |
| !!! | AGATTTCAAGTAGTAGTTTT+CGG | - | chr5.3:1856451-1856470 | None:intergenic | 25.0% |
| !!! | ATAATTGATTTTGACGTGTT+TGG | + | chr5.3:1855782-1855801 | MS.gene40486:intron | 25.0% |
| !!! | CATCATTGATAGTGAAAAAT+AGG | - | chr5.3:1858510-1858529 | None:intergenic | 25.0% |
| !!! | CATTAGATTTTTTACACTAC+AGG | + | chr5.3:1857619-1857638 | MS.gene40486:intron | 25.0% |
| !!! | CTATTTTTCACTATCAATGA+TGG | + | chr5.3:1858508-1858527 | MS.gene40486:CDS | 25.0% |
| !!! | GATTTTAGCCTTGAATTTAA+TGG | + | chr5.3:1857140-1857159 | MS.gene40486:intron | 25.0% |
| !!! | GTACTATATAATTTTGGTCT+AGG | + | chr5.3:1857417-1857436 | MS.gene40486:intron | 25.0% |
| !!! | TAATTGATTTTGACGTGTTT+GGG | + | chr5.3:1855783-1855802 | MS.gene40486:intron | 25.0% |
| !!! | TTTTTTTGGAGTGATGATTA+TGG | - | chr5.3:1857756-1857775 | None:intergenic | 25.0% |
| AAAAAGGGGTAATTTGAACT+TGG | - | chr5.3:1856549-1856568 | None:intergenic | 30.0% | |
| AAACACATGACAAGTTTAGA+TGG | + | chr5.3:1856879-1856898 | MS.gene40486:intron | 30.0% | |
| AACACATGACAAGTTTAGAT+GGG | + | chr5.3:1856880-1856899 | MS.gene40486:intron | 30.0% | |
| AACCTATGTCAAAAATCTCT+TGG | + | chr5.3:1856245-1856264 | MS.gene40486:intron | 30.0% | |
| AAGGGTTTGAAAAAGTTTAC+AGG | - | chr5.3:1856199-1856218 | None:intergenic | 30.0% | |
| AAGTTGAATCTCTTTCTTTC+TGG | + | chr5.3:1857291-1857310 | MS.gene40486:intron | 30.0% | |
| AATCTAAGCATATCAATAGC+TGG | - | chr5.3:1858279-1858298 | None:intergenic | 30.0% | |
| ACTTGCAAAAATGGTTGAAT+GGG | - | chr5.3:1857826-1857845 | None:intergenic | 30.0% | |
| AGATATATGTATGATGAGGA+AGG | - | chr5.3:1856636-1856655 | None:intergenic | 30.0% | |
| ATATATGCTTGGGTTCATAT+GGG | - | chr5.3:1857521-1857540 | None:intergenic | 30.0% | |
| CAGTTGAAGATGAAATAAAG+AGG | + | chr5.3:1856360-1856379 | MS.gene40486:intron | 30.0% | |
| CTTTGTATCAATTCCGTAAT+GGG | + | chr5.3:1855491-1855510 | MS.gene40486:CDS | 30.0% | |
| GAAATAGGGTTTGAATGAAA+TGG | + | chr5.3:1857924-1857943 | MS.gene40486:intron | 30.0% | |
| GGATACATTTGTGTAAAAGT+GGG | - | chr5.3:1857170-1857189 | None:intergenic | 30.0% | |
| TATATATGCTTGGGTTCATA+TGG | - | chr5.3:1857522-1857541 | None:intergenic | 30.0% | |
| TATTTCTCTCAAAATTTGGG+GGG | - | chr5.3:1857910-1857929 | None:intergenic | 30.0% | |
| TCATCACTCCAAAAAAACAA+AGG | + | chr5.3:1857759-1857778 | MS.gene40486:intron | 30.0% | |
| TGGATACATTTGTGTAAAAG+TGG | - | chr5.3:1857171-1857190 | None:intergenic | 30.0% | |
| ! | ACCCTATTTCTCTCAAAATT+TGG | - | chr5.3:1857914-1857933 | None:intergenic | 30.0% |
| ! | CCCTATTTCTCTCAAAATTT+GGG | - | chr5.3:1857913-1857932 | None:intergenic | 30.0% |
| ! | CCTATTTCTCTCAAAATTTG+GGG | - | chr5.3:1857912-1857931 | None:intergenic | 30.0% |
| ! | CTATTTCTCTCAAAATTTGG+GGG | - | chr5.3:1857911-1857930 | None:intergenic | 30.0% |
| ! | CTCTTTATTTCATCTTCAAC+TGG | - | chr5.3:1856362-1856381 | None:intergenic | 30.0% |
| ! | TACCAAGAGATTTTTGACAT+AGG | - | chr5.3:1856250-1856269 | None:intergenic | 30.0% |
| ! | TTGAGATTTGACAAGTATTG+GGG | + | chr5.3:1856297-1856316 | MS.gene40486:intron | 30.0% |
| !! | CATTCGTTTTTCACTTTTCA+GGG | + | chr5.3:1855435-1855454 | MS.gene40486:intron | 30.0% |
| !! | CCCAAATTTTGAGAGAAATA+GGG | + | chr5.3:1857910-1857929 | MS.gene40486:intron | 30.0% |
| !! | GAAGGATAGTACTGATTATT+AGG | - | chr5.3:1856618-1856637 | None:intergenic | 30.0% |
| !! | TACACCTCTAGAATCAAATT+TGG | - | chr5.3:1857016-1857035 | None:intergenic | 30.0% |
| !! | TCATTCGTTTTTCACTTTTC+AGG | + | chr5.3:1855434-1855453 | MS.gene40486:intron | 30.0% |
| !! | TCTTGTTGATAAGTGCATTT+TGG | + | chr5.3:1858574-1858593 | MS.gene40486:CDS | 30.0% |
| !! | TGTTTCTATCTCCTTTTGAA+CGG | - | chr5.3:1856864-1856883 | None:intergenic | 30.0% |
| !!! | ATATCCAGTATTTTGGTTGA+GGG | + | chr5.3:1857539-1857558 | MS.gene40486:intron | 30.0% |
| !!! | TATATCCAGTATTTTGGTTG+AGG | + | chr5.3:1857538-1857557 | MS.gene40486:intron | 30.0% |
| AAAGCTACAAATCCTAGCTT+CGG | - | chr5.3:1855835-1855854 | None:intergenic | 35.0% | |
| AAATAGGTTGTGGCTAATGA+AGG | - | chr5.3:1857730-1857749 | None:intergenic | 35.0% | |
| AAGGGTTATCTCTCATACAA+TGG | - | chr5.3:1856400-1856419 | None:intergenic | 35.0% | |
| AATAGGTTGTGGCTAATGAA+GGG | - | chr5.3:1857729-1857748 | None:intergenic | 35.0% | |
| AATCTTGAAGCTTAGTGACA+GGG | + | chr5.3:1856269-1856288 | MS.gene40486:intron | 35.0% | |
| ACAAATGAGCAGGAACTATT+AGG | - | chr5.3:1858011-1858030 | None:intergenic | 35.0% | |
| ACACTTATGACTTACCTATC+CGG | + | chr5.3:1858206-1858225 | MS.gene40486:intron | 35.0% | |
| ACACTTCACAAGCTTGAAAA+GGG | + | chr5.3:1858467-1858486 | MS.gene40486:CDS | 35.0% | |
| AGAGATTCACAAACTGAAGT+AGG | - | chr5.3:1856335-1856354 | None:intergenic | 35.0% | |
| AGGAATCTTAAAGGACTTTC+AGG | + | chr5.3:1857586-1857605 | MS.gene40486:intron | 35.0% | |
| AGTCTGAGCCAAACTTAATA+AGG | + | chr5.3:1857843-1857862 | MS.gene40486:intron | 35.0% | |
| ATGAGTTCGTTTGATCCATA+TGG | + | chr5.3:1855676-1855695 | MS.gene40486:intron | 35.0% | |
| CAATTCTACGGATCAATATC+CGG | - | chr5.3:1858228-1858247 | None:intergenic | 35.0% | |
| GACTTGCAAAAATGGTTGAA+TGG | - | chr5.3:1857827-1857846 | None:intergenic | 35.0% | |
| GCTTTGTATCAATTCCGTAA+TGG | + | chr5.3:1855490-1855509 | MS.gene40486:CDS | 35.0% | |
| GTAGATCAACAAGTGAAGAA+AGG | + | chr5.3:1855989-1856008 | MS.gene40486:intron | 35.0% | |
| GTTCTGTTCAGGAATCTTAA+AGG | + | chr5.3:1857577-1857596 | MS.gene40486:intron | 35.0% | |
| TAATCTTGAAGCTTAGTGAC+AGG | + | chr5.3:1856268-1856287 | MS.gene40486:intron | 35.0% | |
| TCCCAAAACACATAAGAACA+CGG | + | chr5.3:1857672-1857691 | MS.gene40486:intron | 35.0% | |
| TGTTTGATATGAAACCTGCT+GGG | - | chr5.3:1856045-1856064 | None:intergenic | 35.0% | |
| TTAAGATTCCTGAACAGAAC+AGG | - | chr5.3:1857577-1857596 | None:intergenic | 35.0% | |
| TTGTTTGATATGAAACCTGC+TGG | - | chr5.3:1856046-1856065 | None:intergenic | 35.0% | |
| TTTGGAAATCAGATCAAGGT+TGG | + | chr5.3:1858592-1858611 | MS.gene40486:CDS | 35.0% | |
| TTTGGCATGTCATTCTACAA+GGG | - | chr5.3:1856418-1856437 | None:intergenic | 35.0% | |
| ! | ACATAGGTTTTCAGTTTCCA+GGG | - | chr5.3:1856234-1856253 | None:intergenic | 35.0% |
| ! | ACCGTGTTCTTATGTGTTTT+GGG | - | chr5.3:1857676-1857695 | None:intergenic | 35.0% |
| ! | ATTATGGTGGAAATAGGTTG+TGG | - | chr5.3:1857740-1857759 | None:intergenic | 35.0% |
| ! | GTGATGATTATGGTGGAAAT+AGG | - | chr5.3:1857746-1857765 | None:intergenic | 35.0% |
| ! | TCTTTTTCTGTGTATGTGAC+TGG | - | chr5.3:1858158-1858177 | None:intergenic | 35.0% |
| ! | TGGGTTGACCATTAAATTCA+AGG | - | chr5.3:1857151-1857170 | None:intergenic | 35.0% |
| !! | ATTGATTTTAACCCGAAGCT+AGG | + | chr5.3:1855820-1855839 | MS.gene40486:intron | 35.0% |
| !! | CCCCAAATTTTGAGAGAAAT+AGG | + | chr5.3:1857909-1857928 | MS.gene40486:intron | 35.0% |
| !! | CTAAGTTAAGTTGATGATGG+AGG | - | chr5.3:1857705-1857724 | None:intergenic | 35.0% |
| !! | GCATTTTGGAAATCAGATCA+AGG | + | chr5.3:1858588-1858607 | MS.gene40486:CDS | 35.0% |
| !! | GGACTAAGTTAAGTTGATGA+TGG | - | chr5.3:1857708-1857727 | None:intergenic | 35.0% |
| !!! | GCATTTTTTTTTCCCCATAC+TGG | + | chr5.3:1856747-1856766 | MS.gene40486:intron | 35.0% |
| !!! | GTTTTCGGATTAGTTGGTAA+TGG | + | chr5.3:1855220-1855239 | MS.gene40486:CDS | 35.0% |
| !!! | TATTTTGGTTGAGGGAAGTT+TGG | + | chr5.3:1857547-1857566 | MS.gene40486:intron | 35.0% |
| !!! | TTTTGGAGTGATGATTATGG+TGG | - | chr5.3:1857753-1857772 | None:intergenic | 35.0% |
| AAACTTAATAAGGCTGCAGG+TGG | + | chr5.3:1857853-1857872 | MS.gene40486:intron | 40.0% | |
| AAACTTTGGATGGGAAGAGA+TGG | + | chr5.3:1856499-1856518 | MS.gene40486:intron | 40.0% | |
| AACTTAATAAGGCTGCAGGT+GGG | + | chr5.3:1857854-1857873 | MS.gene40486:intron | 40.0% | |
| AACTTTGGATGGGAAGAGAT+GGG | + | chr5.3:1856500-1856519 | MS.gene40486:intron | 40.0% | |
| AAGAAGGATGTTCACAGAGT+AGG | - | chr5.3:1858393-1858412 | None:intergenic | 40.0% | |
| AAGCTACAAATCCTAGCTTC+GGG | - | chr5.3:1855834-1855853 | None:intergenic | 40.0% | |
| AAGTCCTGTTTCAGTAAGTG+AGG | - | chr5.3:1855706-1855725 | None:intergenic | 40.0% | |
| AATGAACAGATCACAGATGG+TGG | - | chr5.3:1857797-1857816 | None:intergenic | 40.0% | |
| ACACAACCAATAATACGGGA+AGG | - | chr5.3:1856968-1856987 | None:intergenic | 40.0% | |
| ACTTCCCTCAACCAAAATAC+TGG | - | chr5.3:1857546-1857565 | None:intergenic | 40.0% | |
| AGAAGGATGTTCACAGAGTA+GGG | - | chr5.3:1858392-1858411 | None:intergenic | 40.0% | |
| AGAATCCCTTCCCGTATTAT+TGG | + | chr5.3:1856959-1856978 | MS.gene40486:intron | 40.0% | |
| ATCAAACAAACTCTGCCAGT+TGG | + | chr5.3:1856057-1856076 | MS.gene40486:intron | 40.0% | |
| ATCAACCCATGAAACCAGTA+TGG | - | chr5.3:1856764-1856783 | None:intergenic | 40.0% | |
| ATCTCTTCCCATCCAAAGTT+TGG | - | chr5.3:1856500-1856519 | None:intergenic | 40.0% | |
| ATTGAATACCTTGCGAAGAG+CGG | - | chr5.3:1855569-1855588 | None:intergenic | 40.0% | |
| CACAACCAATAATACGGGAA+GGG | - | chr5.3:1856967-1856986 | None:intergenic | 40.0% | |
| CAGCTAACCAAACTTTGGAT+GGG | + | chr5.3:1856490-1856509 | MS.gene40486:intron | 40.0% | |
| CTTTGGCATGTCATTCTACA+AGG | - | chr5.3:1856419-1856438 | None:intergenic | 40.0% | |
| CTTTGTCATAACCAGCAAGA+AGG | - | chr5.3:1858409-1858428 | None:intergenic | 40.0% | |
| GAACATGATCTTGTCTTCGT+TGG | - | chr5.3:1855302-1855321 | None:intergenic | 40.0% | |
| GACACTTCACAAGCTTGAAA+AGG | + | chr5.3:1858466-1858485 | MS.gene40486:CDS | 40.0% | |
| GGAGCCAAATTTGATTCTAG+AGG | + | chr5.3:1857009-1857028 | MS.gene40486:intron | 40.0% | |
| GTCAATGAACAGATCACAGA+TGG | - | chr5.3:1857800-1857819 | None:intergenic | 40.0% | |
| TAACCCAGCTAACCAAACTT+TGG | + | chr5.3:1856485-1856504 | MS.gene40486:intron | 40.0% | |
| TAGTTGACATGCGAATGGTT+TGG | + | chr5.3:1856080-1856099 | MS.gene40486:intron | 40.0% | |
| TCAACCCATGAAACCAGTAT+GGG | - | chr5.3:1856763-1856782 | None:intergenic | 40.0% | |
| TCACTTACTGAAACAGGACT+TGG | + | chr5.3:1855705-1855724 | MS.gene40486:intron | 40.0% | |
| TTCAGTTTCCAGGGTTATTG+AGG | - | chr5.3:1856225-1856244 | None:intergenic | 40.0% | |
| TTGGCTCAGACTTGCAAAAA+TGG | - | chr5.3:1857835-1857854 | None:intergenic | 40.0% | |
| ! | AAGCTTGAAAAGGGAGCTTT+TGG | + | chr5.3:1858476-1858495 | MS.gene40486:CDS | 40.0% |
| ! | AATCAGATCAAGGTTGGTTG+TGG | + | chr5.3:1858598-1858617 | MS.gene40486:CDS | 40.0% |
| ! | CACCGTGTTCTTATGTGTTT+TGG | - | chr5.3:1857677-1857696 | None:intergenic | 40.0% |
| ! | CATCCAAAGTTTGGTTAGCT+GGG | - | chr5.3:1856491-1856510 | None:intergenic | 40.0% |
| ! | CTTTCTTTTACTGTCAGTGC+TGG | + | chr5.3:1858079-1858098 | MS.gene40486:intron | 40.0% |
| ! | GACATAGGTTTTCAGTTTCC+AGG | - | chr5.3:1856235-1856254 | None:intergenic | 40.0% |
| ! | GGATACTTTTGTGCTAGAGT+GGG | - | chr5.3:1855899-1855918 | None:intergenic | 40.0% |
| ! | TGAATCTCTTTCTTTCTGGC+TGG | + | chr5.3:1857295-1857314 | MS.gene40486:intron | 40.0% |
| ! | TGGATACTTTTGTGCTAGAG+TGG | - | chr5.3:1855900-1855919 | None:intergenic | 40.0% |
| !! | ACCTGCAGCCTTATTAAGTT+TGG | - | chr5.3:1857854-1857873 | None:intergenic | 40.0% |
| !! | GAAAAGGGAGCTTTTGGTTA+TGG | + | chr5.3:1858482-1858501 | MS.gene40486:CDS | 40.0% |
| !! | TTGACAAGTATTGGGGTTAG+TGG | + | chr5.3:1856304-1856323 | MS.gene40486:intron | 40.0% |
| !! | TTGGTTTTCCTGTTCTGTTC+AGG | + | chr5.3:1857566-1857585 | MS.gene40486:intron | 40.0% |
| !! | TTTCCCCATACTGGTTTCAT+GGG | + | chr5.3:1856756-1856775 | MS.gene40486:intron | 40.0% |
| !!! | GAATGCGTTTTCGGATTAGT+TGG | + | chr5.3:1855214-1855233 | MS.gene40486:CDS | 40.0% |
| !!! | TTTTCCCCATACTGGTTTCA+TGG | + | chr5.3:1856755-1856774 | MS.gene40486:intron | 40.0% |
| AAGAGAGTGAAACCTGTCAC+CGG | - | chr5.3:1855362-1855381 | None:intergenic | 45.0% | |
| AAGCCTTAACCCACTAAGTG+GGG | + | chr5.3:1856673-1856692 | MS.gene40486:intron | 45.0% | |
| ACTTAATAAGGCTGCAGGTG+GGG | + | chr5.3:1857855-1857874 | MS.gene40486:intron | 45.0% | |
| ATCCCTGTTATAGCCATCGT+AGG | + | chr5.3:1856013-1856032 | MS.gene40486:intron | 45.0% | |
| ATGGACAGACACTTCCATAG+CGG | + | chr5.3:1858527-1858546 | MS.gene40486:CDS | 45.0% | |
| CAACCCATGAAACCAGTATG+GGG | - | chr5.3:1856762-1856781 | None:intergenic | 45.0% | |
| CAAGCCTTAACCCACTAAGT+GGG | + | chr5.3:1856672-1856691 | MS.gene40486:intron | 45.0% | |
| CACCTACGATGGCTATAACA+GGG | - | chr5.3:1856018-1856037 | None:intergenic | 45.0% | |
| CCAGCTAACCAAACTTTGGA+TGG | + | chr5.3:1856489-1856508 | MS.gene40486:intron | 45.0% | |
| CCAGGGTTATTGAGGTTCAA+GGG | - | chr5.3:1856217-1856236 | None:intergenic | 45.0% | |
| CCATCCAAAGTTTGGTTAGC+TGG | - | chr5.3:1856492-1856511 | None:intergenic | 45.0% | |
| CCTGTTTCAGTAAGTGAGGT+CGG | - | chr5.3:1855702-1855721 | None:intergenic | 45.0% | |
| CGATGAGTTTGTGTGAATCG+AGG | - | chr5.3:1855324-1855343 | None:intergenic | 45.0% | |
| CTACGGATCAATATCCGGAT+AGG | - | chr5.3:1858223-1858242 | None:intergenic | 45.0% | |
| CTTCGTTGGATTTGTGAACG+AGG | - | chr5.3:1855288-1855307 | None:intergenic | 45.0% | |
| GAATAGTCTAAGCGTGCGTT+TGG | - | chr5.3:1857269-1857288 | None:intergenic | 45.0% | |
| GCCAAACTTAATAAGGCTGC+AGG | + | chr5.3:1857850-1857869 | MS.gene40486:intron | 45.0% | |
| GCTGGTTATGACAAAGAGAC+AGG | + | chr5.3:1858413-1858432 | MS.gene40486:CDS | 45.0% | |
| GTCATAAGTGTGCTGTGTCA+TGG | - | chr5.3:1858197-1858216 | None:intergenic | 45.0% | |
| GTGATGTCTCACCGTTCAAA+AGG | + | chr5.3:1856850-1856869 | MS.gene40486:intron | 45.0% | |
| TCAAGCCTTAACCCACTAAG+TGG | + | chr5.3:1856671-1856690 | MS.gene40486:intron | 45.0% | |
| TCACCTACGATGGCTATAAC+AGG | - | chr5.3:1856019-1856038 | None:intergenic | 45.0% | |
| TCCAGGGTTATTGAGGTTCA+AGG | - | chr5.3:1856218-1856237 | None:intergenic | 45.0% | |
| TCTGTGAACATCCTTCTTGC+TGG | + | chr5.3:1858395-1858414 | MS.gene40486:CDS | 45.0% | |
| TGGTGAGAGGAATCCCATTA+CGG | - | chr5.3:1855507-1855526 | None:intergenic | 45.0% | |
| TTCGCATGTCAACTACCAAC+TGG | - | chr5.3:1856075-1856094 | None:intergenic | 45.0% | |
| ! | ATGGTGCAAGAGAGTATGCA+TGG | + | chr5.3:1858657-1858676 | MS.gene40486:CDS | 45.0% |
| ! | GGTGTCGAGATTGATTCTAG+AGG | + | chr5.3:1855756-1855775 | MS.gene40486:intron | 45.0% |
| ! | GTTTTCGGCTCTCTCAACTT+TGG | - | chr5.3:1856436-1856455 | None:intergenic | 45.0% |
| !! | ATCTCTTTCTTTCTGGCTGG+AGG | + | chr5.3:1857298-1857317 | MS.gene40486:intron | 45.0% |
| !! | GTTGGTAGTTGACATGCGAA+TGG | + | chr5.3:1856075-1856094 | MS.gene40486:intron | 45.0% |
| !! | AAATTAGAAAAAAAATAAAA+AGG | - | chr5.3:1856565-1856584 | None:intergenic | 5.0% |
| !! | AATGTTAAAAATTTAATATT+TGG | + | chr5.3:1856786-1856805 | MS.gene40486:intron | 5.0% |
| !! | AATTAGAAAAAAAATAAAAA+GGG | - | chr5.3:1856564-1856583 | None:intergenic | 5.0% |
| AGAGAGTGAAACCTGTCACC+GGG | - | chr5.3:1855361-1855380 | None:intergenic | 50.0% | |
| AGTAAGTGAGGTCGGCCATA+TGG | - | chr5.3:1855694-1855713 | None:intergenic | 50.0% | |
| AGTGTGCTGTGTCATGGTGA+TGG | - | chr5.3:1858191-1858210 | None:intergenic | 50.0% | |
| ATGTATCCGACCCCACTTAG+TGG | - | chr5.3:1856686-1856705 | None:intergenic | 50.0% | |
| CACAAACTCATCGCTGCTAG+CGG | + | chr5.3:1855331-1855350 | MS.gene40486:CDS | 50.0% | |
| CCCTTGAACCTCAATAACCC+TGG | + | chr5.3:1856214-1856233 | MS.gene40486:intron | 50.0% | |
| CCGACCTCACTTACTGAAAC+AGG | + | chr5.3:1855699-1855718 | MS.gene40486:intron | 50.0% | |
| CTTAACCCACTAAGTGGGGT+CGG | + | chr5.3:1856677-1856696 | MS.gene40486:intron | 50.0% | |
| CTTCCACGTTCATTCCGCTA+TGG | - | chr5.3:1858544-1858563 | None:intergenic | 50.0% | |
| GAAATTAGCAGCAGCAGCTG+TGG | - | chr5.3:1855527-1855546 | None:intergenic | 50.0% | |
| GCTGCTGCTAATTTCACTCG+TGG | + | chr5.3:1855532-1855551 | MS.gene40486:CDS | 50.0% | |
| GGATACCATCATCTCTCGCT+CGG | - | chr5.3:1856528-1856547 | None:intergenic | 50.0% | |
| GTGAACGAGGATGCTGTGAA+CGG | - | chr5.3:1855275-1855294 | None:intergenic | 50.0% | |
| GTGTGCTGTGTCATGGTGAT+GGG | - | chr5.3:1858190-1858209 | None:intergenic | 50.0% | |
| TGTATCCGACCCCACTTAGT+GGG | - | chr5.3:1856685-1856704 | None:intergenic | 50.0% | |
| ! | CTTCCATAGCGGAATGAACG+TGG | + | chr5.3:1858538-1858557 | MS.gene40486:CDS | 50.0% |
| ! | TGTGCTGTGTCATGGTGATG+GGG | - | chr5.3:1858189-1858208 | None:intergenic | 50.0% |
| GAATACCTTGCGAAGAGCGG+TGG | - | chr5.3:1855566-1855585 | None:intergenic | 55.0% | |
| TAATGGCTTCGCGATCGTGG+TGG | + | chr5.3:1855237-1855256 | MS.gene40486:CDS | 55.0% | |
| TGCATGGCGCGAATCAGTCA+AGG | + | chr5.3:1858673-1858692 | MS.gene40486:CDS | 55.0% | |
| !! | CGACCCCACTTAGTGGGTTA+AGG | - | chr5.3:1856679-1856698 | None:intergenic | 55.0% |
| !! | GTGCTGTGTCATGGTGATGG+GGG | - | chr5.3:1858188-1858207 | None:intergenic | 55.0% |
| !! | TGGTAATGGCTTCGCGATCG+TGG | + | chr5.3:1855234-1855253 | MS.gene40486:CDS | 55.0% |
| ATCGCTGCTAGCGGTGAACC+CGG | + | chr5.3:1855340-1855359 | MS.gene40486:CDS | 60.0% | |
| ATCGTAGGTGAGAGCCCAGC+AGG | + | chr5.3:1856028-1856047 | MS.gene40486:intron | 60.0% | |
| GGGAACCGAGCGAGAGATGA+TGG | + | chr5.3:1856520-1856539 | MS.gene40486:intron | 60.0% | |
| TAAGGCTGCAGGTGGGGTAC+TGG | + | chr5.3:1857861-1857880 | MS.gene40486:intron | 60.0% | |
| TGCTGGGCTCTCACCTACGA+TGG | - | chr5.3:1856029-1856048 | None:intergenic | 60.0% | |
| !! | GTGGGGTACTGGTGGTGGAA+GGG | + | chr5.3:1857872-1857891 | MS.gene40486:intron | 60.0% |
| CTAGCGGTGAACCCGGTGAC+AGG | + | chr5.3:1855347-1855366 | MS.gene40486:CDS | 65.0% | |
| GCAGCAGCAGCTGTGGTGAG+AGG | - | chr5.3:1855520-1855539 | None:intergenic | 65.0% | |
| GCTTGCCACCGCTCTTCGCA+AGG | + | chr5.3:1855558-1855577 | MS.gene40486:CDS | 65.0% | |
| !! | GGTGGGGTACTGGTGGTGGA+AGG | + | chr5.3:1857871-1857890 | MS.gene40486:intron | 65.0% |
| !! | TGCAGGTGGGGTACTGGTGG+TGG | + | chr5.3:1857867-1857886 | MS.gene40486:intron | 65.0% |
| !! | GGCTGCAGGTGGGGTACTGG+TGG | + | chr5.3:1857864-1857883 | MS.gene40486:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 1855211 | 1858715 | 1855211 | ID=MS.gene40486 |
| chr5.3 | mRNA | 1855211 | 1858715 | 1855211 | ID=MS.gene40486.t1;Parent=MS.gene40486 |
| chr5.3 | exon | 1855211 | 1855368 | 1855211 | ID=MS.gene40486.t1.exon1;Parent=MS.gene40486.t1 |
| chr5.3 | CDS | 1855211 | 1855368 | 1855211 | ID=cds.MS.gene40486.t1;Parent=MS.gene40486.t1 |
| chr5.3 | exon | 1855456 | 1855579 | 1855456 | ID=MS.gene40486.t1.exon2;Parent=MS.gene40486.t1 |
| chr5.3 | CDS | 1855456 | 1855579 | 1855456 | ID=cds.MS.gene40486.t1;Parent=MS.gene40486.t1 |
| chr5.3 | exon | 1858386 | 1858715 | 1858386 | ID=MS.gene40486.t1.exon3;Parent=MS.gene40486.t1 |
| chr5.3 | CDS | 1858386 | 1858715 | 1858386 | ID=cds.MS.gene40486.t1;Parent=MS.gene40486.t1 |
| Gene Sequence |
| Protein sequence |
