AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040253

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040253.t1 MTR_7g032380 82.915 199 31 2 108 305 68 264 1.26e-111 328
MS.gene040253.t1 MTR_7g032370 71.101 218 39 6 108 305 47 260 2.12e-98 294
MS.gene040253.t1 MTR_8g085430 56.132 212 43 4 108 311 68 237 1.06e-59 194
MS.gene040253.t1 MTR_7g034115 50.000 226 81 6 109 305 69 291 1.66e-58 192
MS.gene040253.t1 MTR_1g041245 48.918 231 81 9 107 305 67 292 1.27e-54 182
MS.gene040253.t1 MTR_7g034110 41.463 205 97 6 108 306 68 255 4.26e-35 130
MS.gene040253.t1 MTR_7g034120 36.726 226 103 8 117 307 4 224 7.88e-32 120
MS.gene040253.t1 MTR_7g033915 34.188 234 94 7 108 306 68 276 3.66e-31 120
MS.gene040253.t1 MTR_7g033990 36.481 233 108 8 108 306 68 294 6.54e-31 120
MS.gene040253.t1 MTR_7g115270 35.484 248 104 9 108 305 69 310 2.21e-28 113
MS.gene040253.t1 MTR_7g056433 35.470 234 110 10 108 305 69 297 5.82e-28 112
MS.gene040253.t1 MTR_5g012840 37.073 205 103 8 108 306 46 230 2.24e-26 106
MS.gene040253.t1 MTR_3g040700 31.579 304 171 12 35 311 28 321 3.69e-25 104
MS.gene040253.t1 MTR_5g013500 33.884 242 93 9 109 305 53 272 6.42e-25 103
MS.gene040253.t1 MTR_7g098510 34.783 230 113 9 108 305 75 299 3.35e-24 101
MS.gene040253.t1 MTR_0492s0020 32.197 264 131 10 76 306 111 359 1.20e-23 100
MS.gene040253.t1 MTR_0543s0010 32.197 264 131 10 76 306 111 359 1.45e-23 100
MS.gene040253.t1 MTR_7g088260 32.222 270 141 11 70 305 110 371 9.80e-23 98.2
MS.gene040253.t1 MTR_7g098480 34.513 226 113 9 110 305 77 297 1.97e-22 97.4
MS.gene040253.t1 MTR_3g036250 34.091 220 115 8 110 305 64 277 3.82e-22 95.5
MS.gene040253.t1 MTR_7g056420 32.394 284 112 10 66 305 23 270 1.04e-21 96.3
MS.gene040253.t1 MTR_7g056430 32.394 284 112 10 66 305 23 270 1.19e-21 95.9
MS.gene040253.t1 MTR_5g008950 34.101 217 104 8 122 305 63 273 2.21e-20 90.9
MS.gene040253.t1 MTR_7g098570 34.934 229 110 9 110 305 79 301 2.29e-20 91.7
MS.gene040253.t1 MTR_8g092760 78.182 55 12 0 1 55 32 86 9.67e-20 89.7
MS.gene040253.t1 MTR_7g114710 33.486 218 117 9 104 305 66 271 1.75e-18 85.1
MS.gene040253.t1 MTR_7g033945 45.370 108 50 4 108 209 68 172 1.59e-17 79.3
MS.gene040253.t1 MTR_4g134150 43.284 134 62 7 107 236 66 189 3.06e-17 79.7
MS.gene040253.t1 MTR_3g105060 41.880 117 65 2 124 240 87 200 1.12e-16 80.1
MS.gene040253.t1 MTR_2g007450 28.242 347 163 16 35 309 1 333 8.99e-16 77.8
MS.gene040253.t1 MTR_3g108560 30.508 236 117 10 107 307 76 299 1.52e-15 76.3
MS.gene040253.t1 MTR_3g107120 30.769 247 116 10 106 312 79 310 1.81e-15 76.6
MS.gene040253.t1 MTR_7g056447 38.211 123 72 3 109 231 67 185 1.97e-15 75.5
MS.gene040253.t1 MTR_3g108560 30.638 235 116 10 107 306 76 298 2.11e-15 76.6
MS.gene040253.t1 MTR_7g056287 28.014 282 150 11 64 304 11 280 2.62e-14 73.2
MS.gene040253.t1 MTR_7g056020 31.902 163 78 6 174 306 124 283 3.23e-14 73.6
MS.gene040253.t1 MTR_7g056277 28.214 280 148 11 64 302 267 534 3.74e-13 70.1
MS.gene040253.t1 MTR_5g007410 29.870 231 104 10 121 305 99 317 8.30e-13 68.9
MS.gene040253.t1 MTR_3g087260 33.588 131 80 4 137 266 81 205 1.42e-12 68.2
MS.gene040253.t1 MTR_7g056417 47.222 72 37 1 170 241 7 77 1.87e-12 64.7
MS.gene040253.t1 MTR_3g110010 30.288 208 120 8 103 310 65 247 2.10e-12 68.2
MS.gene040253.t1 MTR_3g109982 30.288 208 120 8 103 310 65 247 2.53e-12 67.8
MS.gene040253.t1 MTR_2g007400 27.801 241 136 10 103 306 67 306 5.34e-12 66.2
MS.gene040253.t1 MTR_5g031970 29.851 201 116 8 123 306 75 267 1.66e-11 64.7
MS.gene040253.t1 MTR_4g080610 25.410 244 136 8 108 306 23 265 2.10e-11 64.3
MS.gene040253.t1 MTR_1g107385 29.804 255 124 13 97 305 83 328 2.69e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040253.t1 AT3G59240 32.680 153 97 4 102 253 68 215 1.03e-11 65.9
MS.gene040253.t1 AT4G14103 30.055 183 114 6 109 282 73 250 2.55e-11 64.3
MS.gene040253.t1 AT4G14103 30.055 183 114 6 109 282 73 250 2.55e-11 64.3
MS.gene040253.t1 AT4G14103 30.055 183 114 6 109 282 73 250 3.62e-11 63.9

Find 58 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCCAAATCCTCTAAAAT+TGG 0.198046 7.1:+65405453 None:intergenic
TATTTGAATTGACACATAAT+TGG 0.255254 7.1:-65405196 MS.gene040253:CDS
CTCAAATGTGGTAACTCTTC+TGG 0.312722 7.1:-65405750 MS.gene040253:CDS
CATCTGGATACAATCTCTTT+TGG 0.316065 7.1:-65405516 MS.gene040253:CDS
TTAGCTCAGCTTGATCGTTC+AGG 0.344240 7.1:-65409925 MS.gene040253:CDS
CTTACTCAAAACTCTTCATC+TGG 0.388425 7.1:-65405532 MS.gene040253:CDS
CACATTTGAGGCGGAACGAC+TGG 0.393566 7.1:+65405763 None:intergenic
GCTCACTTCTCTTAAGTTGA+AGG 0.407385 7.1:-65405598 MS.gene040253:CDS
ACTGCTCAGCTTGATCGTTC+AGG 0.410532 7.1:-65409967 MS.gene040253:CDS
GAGTAAGGGAAAATTGAAAT+CGG 0.415451 7.1:+65405548 None:intergenic
AATTAAGCAAGGTGGGAATT+CGG 0.440584 7.1:+65405237 None:intergenic
GGGAAAATTGAAATCGGATT+CGG 0.450987 7.1:+65405554 None:intergenic
ATGGTAAGATTCTGAAGCTT+AGG 0.464246 7.1:+65405131 None:intergenic
CGTTATGAGATGCTCTTAAG+AGG 0.475096 7.1:+65409749 None:intergenic
GTTAACCACTTCCACTTCAC+AGG 0.476998 7.1:+65405173 None:intergenic
ACGATCAAGCTGAGCTAAGC+AGG 0.487042 7.1:+65409888 None:intergenic
AAGATTCTGAATTCCACGTT+GGG 0.497552 7.1:+65405686 None:intergenic
CAGAAGAGTTACCACATTTG+AGG 0.503956 7.1:+65405751 None:intergenic
ACGATCAAGCTGAGCTAAGA+AGG 0.515569 7.1:+65409930 None:intergenic
ATATAAGAGTCCACGTGGTA+TGG 0.525729 7.1:+65410010 None:intergenic
TCTGAAGCTTAGGACAATGT+TGG 0.528193 7.1:+65405141 None:intergenic
CACATAATTGGCCTGTGAAG+TGG 0.551671 7.1:-65405184 MS.gene040253:CDS
TTGCTTGATTATTCTAACAC+GGG 0.552926 7.1:-65405420 MS.gene040253:CDS
GACAAACAAGACCTCGTGAA+TGG 0.553750 7.1:+65405112 None:intergenic
TTCAAATACAATCTTCATGT+GGG 0.553790 7.1:+65405211 None:intergenic
CTCACGTCATTTGTCCGTGC+AGG 0.561728 7.1:+65409716 None:intergenic
ATTCAAATACAATCTTCATG+TGG 0.574384 7.1:+65405210 None:intergenic
ATAAATCTCTTGACATCATG+CGG 0.574878 7.1:+65405720 None:intergenic
TGGGTCAAATTAAGCAAGGT+GGG 0.576273 7.1:+65405230 None:intergenic
ATTGGCCTGTGAAGTGGAAG+TGG 0.580995 7.1:-65405178 MS.gene040253:CDS
GTATTCGATGTTATTCAAAG+TGG 0.585273 7.1:-65405394 MS.gene040253:intron
ATTAAAGCTATGTTCGAGAG+GGG 0.587064 7.1:+65405650 None:intergenic
CTGCAGCGTGATGTTTCTCA+AGG 0.594406 7.1:+65405791 None:intergenic
CAGTCGTTCCGCCTCAAATG+TGG 0.599740 7.1:-65405762 MS.gene040253:CDS
TAAATCTCTTGACATCATGC+GGG 0.605505 7.1:+65405721 None:intergenic
CAAGATTCTGAATTCCACGT+TGG 0.607610 7.1:+65405685 None:intergenic
GAGAGAGCTAGTGATGTTGA+CGG 0.613322 7.1:+65409804 None:intergenic
ATTTGTCCGTGCAGGACGTG+TGG 0.615567 7.1:+65409724 None:intergenic
AATTAAAGCTATGTTCGAGA+GGG 0.621447 7.1:+65405649 None:intergenic
AACGTGCCACACGTCCTGCA+CGG 0.622832 7.1:-65409730 MS.gene040253:CDS
TTTGAGGCGGAACGACTGGA+TGG 0.629754 7.1:+65405767 None:intergenic
ATTGCTTGATTATTCTAACA+CGG 0.637457 7.1:-65405421 MS.gene040253:CDS
GTGGGTCAAATTAAGCAAGG+TGG 0.638262 7.1:+65405229 None:intergenic
AAATTAAAGCTATGTTCGAG+AGG 0.652814 7.1:+65405648 None:intergenic
TTAAAGCTATGTTCGAGAGG+GGG 0.654315 7.1:+65405651 None:intergenic
AAGAGTTACCACATTTGAGG+CGG 0.654647 7.1:+65405754 None:intergenic
CATGTGGGTCAAATTAAGCA+AGG 0.659043 7.1:+65405226 None:intergenic
TCGTTGTCTGAGTAACATTG+TGG 0.660523 7.1:-65409776 MS.gene040253:CDS
ATCAAGCTGAGCTAAGAAGG+TGG 0.663127 7.1:+65409933 None:intergenic
ATTCATGCTGTTGCCCAACG+TGG 0.664829 7.1:-65405699 MS.gene040253:CDS
TATGAGATGCTCTTAAGAGG+AGG 0.665046 7.1:+65409752 None:intergenic
ATCAAGCTGAGCTAAGCAGG+TGG 0.666425 7.1:+65409891 None:intergenic
CTGCAACTGAACACACAAAG+CGG 0.668847 7.1:+65405624 None:intergenic
ATCAAACTGAGCTAAGCATG+TGG 0.668851 7.1:+65409849 None:intergenic
TCAGAATCTTACCATTCACG+AGG 0.714250 7.1:-65405123 MS.gene040253:CDS
AATGTATATAAGAGTCCACG+TGG 0.769831 7.1:+65410005 None:intergenic
GTATGGAGGACCATACCACG+TGG 0.777326 7.1:-65410020 MS.gene040253:CDS
AGAGCTAGTGATGTTGACGG+TGG 0.789257 7.1:+65409807 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATACTTATATGAT+GGG + chr7.1:65407611-65407630 None:intergenic 10.0%
!!! AAAAAAATTGTTCTTTTTTA+TGG + chr7.1:65405893-65405912 None:intergenic 10.0%
!!! AAAAAAGAACAATTTTTTTT+TGG - chr7.1:65405894-65405913 MS.gene040253:intron 10.0%
!!! AAAAAGAACAATTTTTTTTT+GGG - chr7.1:65405895-65405914 MS.gene040253:intron 10.0%
!!! ATATTTTTGTTTTTTTTGAA+AGG - chr7.1:65407696-65407715 MS.gene040253:intron 10.0%
!!! GATTATATATTTTTTTTGAA+AGG - chr7.1:65407718-65407737 MS.gene040253:intron 10.0%
!! AAAAAAAGTTATTATTGCAT+TGG + chr7.1:65406020-65406039 None:intergenic 15.0%
!! CAATAATAATACTTATATGA+TGG + chr7.1:65407612-65407631 None:intergenic 15.0%
!! TAAAGAAAAAAATAATCCTT+TGG + chr7.1:65406086-65406105 None:intergenic 15.0%
!! TAAAGCCTATTTAATTAAAT+AGG - chr7.1:65408772-65408791 MS.gene040253:intron 15.0%
!! TAAATAATGAAATCTTATGA+AGG + chr7.1:65408965-65408984 None:intergenic 15.0%
!! TATGTTAAATAGGATTAAAT+CGG + chr7.1:65407931-65407950 None:intergenic 15.0%
!! TTATACATAAAAAGCTTAAT+AGG + chr7.1:65408843-65408862 None:intergenic 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + chr7.1:65405980-65405999 None:intergenic 15.0%
!!! GTTTTATTTATTTAGAAACT+TGG - chr7.1:65407848-65407867 MS.gene040253:intron 15.0%
!! AAAAGACTAAACTAGTTATT+GGG + chr7.1:65407557-65407576 None:intergenic 20.0%
!! AAATCTAAGCAAACTAATAA+AGG + chr7.1:65407015-65407034 None:intergenic 20.0%
!! AAATTATCCTAATCAACTAT+TGG + chr7.1:65406121-65406140 None:intergenic 20.0%
!! AACATAAGTTAAATTACAAC+AGG + chr7.1:65405708-65405727 None:intergenic 20.0%
!! AATAGTTGATTAGGATAATT+TGG - chr7.1:65406120-65406139 MS.gene040253:intron 20.0%
!! ATGATGTCTTTAATAATTAG+TGG - chr7.1:65406968-65406987 MS.gene040253:intron 20.0%
!! ATGTTAAATAGGATTAAATC+GGG + chr7.1:65407930-65407949 None:intergenic 20.0%
!! CTAAATAACTAATCTTATGA+AGG + chr7.1:65408917-65408936 None:intergenic 20.0%
!! GTAACATAGTATTAATTGAA+GGG + chr7.1:65406055-65406074 None:intergenic 20.0%
!! TATTTGAATTGACACATAAT+TGG - chr7.1:65409922-65409941 MS.gene040253:CDS 20.0%
!! TCATTAAAATGTGCTTAAAT+GGG + chr7.1:65406295-65406314 None:intergenic 20.0%
!! TGTAACATAGTATTAATTGA+AGG + chr7.1:65406056-65406075 None:intergenic 20.0%
!! TTAGTATAATAGTGAATGTT+AGG + chr7.1:65406728-65406747 None:intergenic 20.0%
!! TTCAAATATCACACTATATT+CGG - chr7.1:65406383-65406402 MS.gene040253:intron 20.0%
!! TTCATTAAAATGTGCTTAAA+TGG + chr7.1:65406296-65406315 None:intergenic 20.0%
!!! ATGTCATTTTCATCAAATAT+AGG - chr7.1:65407803-65407822 MS.gene040253:intron 20.0%
!!! TGTAAAATAGGCTTTTAAAT+AGG - chr7.1:65409068-65409087 MS.gene040253:intron 20.0%
!!! TTATTTGTTGTTACAACTTA+CGG + chr7.1:65408146-65408165 None:intergenic 20.0%
! AAACAAACCAATAGTTGATT+AGG - chr7.1:65406111-65406130 MS.gene040253:intron 25.0%
! AACTTCAACGATATCAATAA+TGG + chr7.1:65408874-65408893 None:intergenic 25.0%
! AAGCTACAAGTAGATAAAAA+AGG - chr7.1:65406431-65406450 MS.gene040253:intron 25.0%
! AATATGGTTCAATGATTAAG+TGG - chr7.1:65407999-65408018 MS.gene040253:intron 25.0%
! ATTCAAATACAATCTTCATG+TGG + chr7.1:65409911-65409930 None:intergenic 25.0%
! ATTGAACCATATTACTGAAT+CGG + chr7.1:65407992-65408011 None:intergenic 25.0%
! ATTGCTTGATTATTCTAACA+CGG - chr7.1:65409697-65409716 MS.gene040253:intron 25.0%
! CAAAAGACTAAACTAGTTAT+TGG + chr7.1:65407558-65407577 None:intergenic 25.0%
! CTAAGATACATAGATTACTT+GGG + chr7.1:65407048-65407067 None:intergenic 25.0%
! TCAAATATCACACTATATTC+GGG - chr7.1:65406384-65406403 MS.gene040253:intron 25.0%
! TTCAAATACAATCTTCATGT+GGG + chr7.1:65409910-65409929 None:intergenic 25.0%
! TTTATGGAAAGACACTTAAA+TGG + chr7.1:65405877-65405896 None:intergenic 25.0%
!! AAGTTTTCATGATACTATTC+AGG + chr7.1:65407261-65407280 None:intergenic 25.0%
!! ATTTTAAGCATTCGATTGTA+TGG - chr7.1:65405826-65405845 MS.gene040253:intron 25.0%
!! TAGATTGTGATTGTTTTCTT+AGG - chr7.1:65409627-65409646 MS.gene040253:intron 25.0%
!! TTTAAAACTATGCTGGATAA+TGG - chr7.1:65408078-65408097 MS.gene040253:intron 25.0%
!!! GATTTTTCATTTTGTTTAGC+CGG + chr7.1:65406863-65406882 None:intergenic 25.0%
AAATAGGCCAAAATTTACGA+AGG + chr7.1:65409015-65409034 None:intergenic 30.0%
AAATTAAAGCTATGTTCGAG+AGG + chr7.1:65409473-65409492 None:intergenic 30.0%
AATTAAAGCTATGTTCGAGA+GGG + chr7.1:65409472-65409491 None:intergenic 30.0%
ACATAAAAAGCTTAATAGGC+CGG + chr7.1:65408839-65408858 None:intergenic 30.0%
ACCAGAAATGAGATTTACTT+GGG + chr7.1:65407107-65407126 None:intergenic 30.0%
AGTAAAGTGAGACCTATAAA+AGG - chr7.1:65405565-65405584 MS.gene040253:CDS 30.0%
ATAAATCTCTTGACATCATG+CGG + chr7.1:65409401-65409420 None:intergenic 30.0%
ATATAAGCCTACTGCTAAAT+AGG + chr7.1:65409031-65409050 None:intergenic 30.0%
ATATGGACCTCAAGATTAAT+GGG - chr7.1:65405511-65405530 MS.gene040253:CDS 30.0%
ATCAATCATCATAGTTCATC+TGG - chr7.1:65407375-65407394 MS.gene040253:intron 30.0%
ATTCGATTGTATGGAGAATT+CGG - chr7.1:65405835-65405854 MS.gene040253:intron 30.0%
CAAAATGAAAAATCGCTAAG+TGG - chr7.1:65406869-65406888 MS.gene040253:intron 30.0%
CAGATATATTCATGTGCTTT+AGG - chr7.1:65408989-65409008 MS.gene040253:intron 30.0%
CATCGATGCAAAATATTAGT+AGG + chr7.1:65408172-65408191 None:intergenic 30.0%
CCTATTTAATTAAATAGGCC+AGG - chr7.1:65408777-65408796 MS.gene040253:intron 30.0%
CCTGGCCTATTTAATTAAAT+AGG + chr7.1:65408780-65408799 None:intergenic 30.0%
GAAAAACTTTACCATACACT+AGG + chr7.1:65406344-65406363 None:intergenic 30.0%
GAGTAAGGGAAAATTGAAAT+CGG + chr7.1:65409573-65409592 None:intergenic 30.0%
GATGACTCGATTATATAACT+TGG + chr7.1:65407970-65407989 None:intergenic 30.0%
GCTAAGATACATAGATTACT+TGG + chr7.1:65407049-65407068 None:intergenic 30.0%
GTAGACAAAATGTCTAAAAG+TGG + chr7.1:65409297-65409316 None:intergenic 30.0%
GTATTCGATGTTATTCAAAG+TGG - chr7.1:65409724-65409743 MS.gene040253:CDS 30.0%
TAAAAGAAACAATGAGTGAG+AGG + chr7.1:65406700-65406719 None:intergenic 30.0%
TAAACTAGTTATTGGGCTTA+CGG + chr7.1:65407550-65407569 None:intergenic 30.0%
TAATGCGAAGTTTCTATCAA+TGG - chr7.1:65409776-65409795 MS.gene040253:CDS 30.0%
TACGTGAACAGTTATATAAC+AGG - chr7.1:65405732-65405751 MS.gene040253:CDS 30.0%
TAGGGTTTGTGTATTTGATA+GGG + chr7.1:65408300-65408319 None:intergenic 30.0%
TATGTTACACAAACTTCCAA+AGG - chr7.1:65406067-65406086 MS.gene040253:intron 30.0%
TGGCCTACTTCAAAAATTAT+AGG + chr7.1:65409176-65409195 None:intergenic 30.0%
TTAAATAGGATTAAATCGGG+TGG + chr7.1:65407927-65407946 None:intergenic 30.0%
TTAGGGTTTGTGTATTTGAT+AGG + chr7.1:65408301-65408320 None:intergenic 30.0%
TTGCTTGATTATTCTAACAC+GGG - chr7.1:65409698-65409717 MS.gene040253:intron 30.0%
! AATCGATTCAAAATAAGTCC+AGG + chr7.1:65407336-65407355 None:intergenic 30.0%
! TTATATGTGTTGCTAGACTT+TGG - chr7.1:65409045-65409064 MS.gene040253:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr7.1:65405954-65405973 None:intergenic 30.0%
!! CTTTTGGAAAAACTTGATCT+GGG + chr7.1:65406247-65406266 None:intergenic 30.0%
!! GTCACTCTTTAGTTTAGTTT+TGG + chr7.1:65406515-65406534 None:intergenic 30.0%
!! GTTTCCAAATCCTCTAAAAT+TGG + chr7.1:65409668-65409687 None:intergenic 30.0%
!!! AGATGAAGAGTTTTGAGTAA+GGG + chr7.1:65409587-65409606 None:intergenic 30.0%
!!! AGGCCTATAATTTTTGAAGT+AGG - chr7.1:65409170-65409189 MS.gene040253:intron 30.0%
!!! CATAGTTTTAAAAACCGACT+CGG + chr7.1:65408070-65408089 None:intergenic 30.0%
!!! TATAATTTTTGAAGTAGGCC+AGG - chr7.1:65409175-65409194 MS.gene040253:intron 30.0%
!!! TGTTTTGATGATGTAGTCTT+AGG - chr7.1:65406937-65406956 MS.gene040253:intron 30.0%
AAGAGAGAAAAAGCAAAACG+TGG + chr7.1:65408202-65408221 None:intergenic 35.0%
AAGATTCTGAATTCCACGTT+GGG + chr7.1:65409435-65409454 None:intergenic 35.0%
AATCGTTTCAATCTTCATCC+TGG - chr7.1:65407315-65407334 MS.gene040253:intron 35.0%
AATGTATATAAGAGTCCACG+TGG + chr7.1:65405116-65405135 None:intergenic 35.0%
AATTAAGCAAGGTGGGAATT+CGG + chr7.1:65409884-65409903 None:intergenic 35.0%
ACTGCACACAAATTAAGGAA+TGG + chr7.1:65406177-65406196 None:intergenic 35.0%
AGAGAGAAAAAGCAAAACGT+GGG + chr7.1:65408201-65408220 None:intergenic 35.0%
AGTCATCCGATTCAGTAATA+TGG - chr7.1:65407983-65408002 MS.gene040253:intron 35.0%
ATTAAAGCTATGTTCGAGAG+GGG + chr7.1:65409471-65409490 None:intergenic 35.0%
CACCAGAAATGAGATTTACT+TGG + chr7.1:65407108-65407127 None:intergenic 35.0%
CATAAGCTAACTAGAACACA+AGG + chr7.1:65407083-65407102 None:intergenic 35.0%
CATATGGACCTCAAGATTAA+TGG - chr7.1:65405510-65405529 MS.gene040253:CDS 35.0%
CATTAATCTTGAGGTCCATA+TGG + chr7.1:65405512-65405531 None:intergenic 35.0%
CTTACTCAAAACTCTTCATC+TGG - chr7.1:65409586-65409605 MS.gene040253:intron 35.0%
CTTTATAAAAAGCTTGAGCC+TGG + chr7.1:65408757-65408776 None:intergenic 35.0%
GGGAAAATTGAAATCGGATT+CGG + chr7.1:65409567-65409586 None:intergenic 35.0%
GTCATTCCAAGACAAACTAA+TGG - chr7.1:65406891-65406910 MS.gene040253:intron 35.0%
TAAATCTCTTGACATCATGC+GGG + chr7.1:65409400-65409419 None:intergenic 35.0%
TAATTAAATAGGCCAGGCTA+AGG - chr7.1:65408783-65408802 MS.gene040253:intron 35.0%
TATGTACCACAAAGTCAAAC+CGG - chr7.1:65406841-65406860 MS.gene040253:intron 35.0%
TCTTTGTAATTCTCACTCGT+TGG - chr7.1:65408249-65408268 MS.gene040253:intron 35.0%
TGTGCAATTGAAAAGCTAGT+TGG - chr7.1:65408105-65408124 MS.gene040253:intron 35.0%
TTCGATTGTATGGAGAATTC+GGG - chr7.1:65405836-65405855 MS.gene040253:intron 35.0%
TTGTGTATTTGATAGGGAAC+CGG + chr7.1:65408294-65408313 None:intergenic 35.0%
! CATCTGGATACAATCTCTTT+TGG - chr7.1:65409602-65409621 MS.gene040253:intron 35.0%
! CTTGTGTTCTAGTTAGCTTA+TGG - chr7.1:65407081-65407100 MS.gene040253:intron 35.0%
! CTTTAGGCCTTCGTAAATTT+TGG - chr7.1:65409005-65409024 MS.gene040253:intron 35.0%
! GCTAGACTTTGGTGTAAAAT+AGG - chr7.1:65409056-65409075 MS.gene040253:intron 35.0%
! GTTTTCTTAGGCTTCTCAAA+GGG - chr7.1:65409639-65409658 MS.gene040253:intron 35.0%
! TGGCGAATTCTGTAAAGTTT+TGG + chr7.1:65409277-65409296 None:intergenic 35.0%
! TGTTTTCTTAGGCTTCTCAA+AGG - chr7.1:65409638-65409657 MS.gene040253:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr7.1:65406203-65406222 MS.gene040253:intron 35.0%
!! ATGGTAAGATTCTGAAGCTT+AGG + chr7.1:65409990-65410009 None:intergenic 35.0%
!! ATTTTGGCCTATTTAGCAGT+AGG - chr7.1:65409021-65409040 MS.gene040253:intron 35.0%
!! CTCTAGTTGACTCCTTTTAT+AGG + chr7.1:65405580-65405599 None:intergenic 35.0%
!! CTTCATCCATTAGTTTGTCT+TGG + chr7.1:65406900-65406919 None:intergenic 35.0%
!! GCTTTTGGAAAAACTTGATC+TGG + chr7.1:65406248-65406267 None:intergenic 35.0%
!! GTGTCCAATTTTAGAGGATT+TGG - chr7.1:65409661-65409680 MS.gene040253:intron 35.0%
!! TTCCTTAATTTGTGTGCAGT+TGG - chr7.1:65406177-65406196 MS.gene040253:intron 35.0%
!!! CAGATGAAGAGTTTTGAGTA+AGG + chr7.1:65409588-65409607 None:intergenic 35.0%
!!! GTCGGTTTTTAAAACTATGC+TGG - chr7.1:65408071-65408090 MS.gene040253:intron 35.0%
!!! TTTTAGAATGAATGCGTGAG+TGG + chr7.1:65406579-65406598 None:intergenic 35.0%
AAAAAGCCTATTAAGCCCGT+CGG - chr7.1:65408812-65408831 MS.gene040253:intron 40.0%
AAAAATTATAGGCCTGAGCC+TGG + chr7.1:65409165-65409184 None:intergenic 40.0%
AAGAGTTACCACATTTGAGG+CGG + chr7.1:65409367-65409386 None:intergenic 40.0%
AGCCAACTGCACACAAATTA+AGG + chr7.1:65406182-65406201 None:intergenic 40.0%
ATATAAGAGTCCACGTGGTA+TGG + chr7.1:65405111-65405130 None:intergenic 40.0%
ATCAAACTGAGCTAAGCATG+TGG + chr7.1:65405272-65405291 None:intergenic 40.0%
ATCACTCAAAGTCTCTGACT+TGG - chr7.1:65407179-65407198 MS.gene040253:intron 40.0%
ATCAGATCGTTGGAAGAAAG+AGG + chr7.1:65408395-65408414 None:intergenic 40.0%
ATCAGGCCTTTAAATAGGCT+AGG - chr7.1:65409103-65409122 MS.gene040253:intron 40.0%
ATGTGGCAGATAATTGAGTC+CGG + chr7.1:65408566-65408585 None:intergenic 40.0%
ATTAAGAGTTGGAAGGGATC+CGG - chr7.1:65408272-65408291 MS.gene040253:intron 40.0%
ATTGAAGTCAAGAGTGAGGA+CGG + chr7.1:65409252-65409271 None:intergenic 40.0%
CAAGATTCTGAATTCCACGT+TGG + chr7.1:65409436-65409455 None:intergenic 40.0%
CAGAAGAGTTACCACATTTG+AGG + chr7.1:65409370-65409389 None:intergenic 40.0%
CAGAATGACAGTCAAAGCTA+GGG + chr7.1:65408482-65408501 None:intergenic 40.0%
CATCAAAACAACCTATGTCG+AGG + chr7.1:65406927-65406946 None:intergenic 40.0%
CATGTGGGTCAAATTAAGCA+AGG + chr7.1:65409895-65409914 None:intergenic 40.0%
CGGGTTAAATACCTAGTGTA+TGG - chr7.1:65406330-65406349 MS.gene040253:intron 40.0%
CGTTATGAGATGCTCTTAAG+AGG + chr7.1:65405372-65405391 None:intergenic 40.0%
CGTTGGATTAAGAGTTGGAA+GGG - chr7.1:65408266-65408285 MS.gene040253:intron 40.0%
CTCAAATGTGGTAACTCTTC+TGG - chr7.1:65409368-65409387 MS.gene040253:intron 40.0%
CTTTAAATAGGCTAGGCCAT+AGG + chr7.1:65408702-65408721 None:intergenic 40.0%
GCCCAAGTAAATCTCATTTC+TGG - chr7.1:65407103-65407122 MS.gene040253:intron 40.0%
TAATTCTCCCAAACCTCTTC+TGG + chr7.1:65407434-65407453 None:intergenic 40.0%
TATGAGATGCTCTTAAGAGG+AGG + chr7.1:65405369-65405388 None:intergenic 40.0%
TCACTCAAAGTCTCTGACTT+GGG - chr7.1:65407180-65407199 MS.gene040253:intron 40.0%
TCACTCGTTGGATTAAGAGT+TGG - chr7.1:65408261-65408280 MS.gene040253:intron 40.0%
TCAGAATCTTACCATTCACG+AGG - chr7.1:65409995-65410014 MS.gene040253:CDS 40.0%
TCAGAATGACAGTCAAAGCT+AGG + chr7.1:65408483-65408502 None:intergenic 40.0%
TCAGATCGTTGGAAGAAAGA+GGG + chr7.1:65408394-65408413 None:intergenic 40.0%
TCGTTGGATTAAGAGTTGGA+AGG - chr7.1:65408265-65408284 MS.gene040253:intron 40.0%
TCGTTGTCTGAGTAACATTG+TGG - chr7.1:65405342-65405361 MS.gene040253:intron 40.0%
TCTCACTTTACTGACCTAGT+GGG + chr7.1:65405557-65405576 None:intergenic 40.0%
TGACAGATATGAGGGGATTA+GGG + chr7.1:65408318-65408337 None:intergenic 40.0%
TGAGAGATGAATCAGATCGT+TGG + chr7.1:65408405-65408424 None:intergenic 40.0%
TGGGTCAAATTAAGCAAGGT+GGG + chr7.1:65409891-65409910 None:intergenic 40.0%
TTAAAGCTATGTTCGAGAGG+GGG + chr7.1:65409470-65409489 None:intergenic 40.0%
TTGGAAAAACTTGATCTGGG+AGG + chr7.1:65406244-65406263 None:intergenic 40.0%
! AGCCTATTTAAAGCCTAGCT+CGG - chr7.1:65408709-65408728 MS.gene040253:intron 40.0%
! AGGCTTTTAAATAGGCTTCC+AGG - chr7.1:65409076-65409095 MS.gene040253:intron 40.0%
! GAATCGATTCAGACAGTAAG+AGG + chr7.1:65407406-65407425 None:intergenic 40.0%
! GCCTTGTTAATAAACGAGCT+GGG + chr7.1:65408735-65408754 None:intergenic 40.0%
! TCCTGTTCCTTCTTTTTCCT+GGG + chr7.1:65406479-65406498 None:intergenic 40.0%
! TCTGAAGCTTAGGACAATGT+TGG + chr7.1:65409980-65409999 None:intergenic 40.0%
! TGGGAATTCGGTACTTTTGT+CGG + chr7.1:65409872-65409891 None:intergenic 40.0%
! TTCCTGTTCCTTCTTTTTCC+TGG + chr7.1:65406480-65406499 None:intergenic 40.0%
!! AGCTAGGCTTTAAATAGGCT+AGG + chr7.1:65408709-65408728 None:intergenic 40.0%
!! AGTCTTATTCAGAGTGCTCT+TGG - chr7.1:65405649-65405668 MS.gene040253:CDS 40.0%
!! GCTCACTTCTCTTAAGTTGA+AGG - chr7.1:65409520-65409539 MS.gene040253:intron 40.0%
!!! CAAAGGGTGTCCAATTTTAG+AGG - chr7.1:65409655-65409674 MS.gene040253:intron 40.0%
!!! CTTTTTTGTAAGCCTTAGCC+TGG + chr7.1:65408798-65408817 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+AGG - chr7.1:65406207-65406226 MS.gene040253:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr7.1:65406226-65406207 None:intergenic 40.0%
AAAACAACCTATGTCGAGGC+AGG + chr7.1:65406923-65406942 None:intergenic 45.0%
AAAAGCCTATTAAGCCCGTC+GGG - chr7.1:65408813-65408832 MS.gene040253:intron 45.0%
AAAGGAGTCAACTAGAGAGC+AGG - chr7.1:65405583-65405602 MS.gene040253:CDS 45.0%
AAGATGAGAGGAAGGGTTTG+TGG + chr7.1:65408358-65408377 None:intergenic 45.0%
ACCCCTACAACATGAAAGAC+TGG + chr7.1:65408447-65408466 None:intergenic 45.0%
ACGATCAAGCTGAGCTAAGA+AGG + chr7.1:65405191-65405210 None:intergenic 45.0%
ACTCTATGCACATCTTGTGC+TGG + chr7.1:65406799-65406818 None:intergenic 45.0%
AGATGAGAGGAAGGGTTTGT+GGG + chr7.1:65408357-65408376 None:intergenic 45.0%
ATCAAGCTGAGCTAAGAAGG+TGG + chr7.1:65405188-65405207 None:intergenic 45.0%
ATGGGTTCCATCTCTTGGAA+AGG + chr7.1:65408631-65408650 None:intergenic 45.0%
ATGTGAGCGTGACAGATATG+AGG + chr7.1:65408327-65408346 None:intergenic 45.0%
CAATGTGCCCAGGAAAAAGA+AGG - chr7.1:65406469-65406488 MS.gene040253:intron 45.0%
CCATATGGCTCATCTGTACT+AGG + chr7.1:65405497-65405516 None:intergenic 45.0%
CCCAGTCTTTCATGTTGTAG+GGG - chr7.1:65408443-65408462 MS.gene040253:intron 45.0%
CCCCTACAACATGAAAGACT+GGG + chr7.1:65408446-65408465 None:intergenic 45.0%
CCTAGTACAGATGAGCCATA+TGG - chr7.1:65405494-65405513 MS.gene040253:CDS 45.0%
CCTCGAAAATGAGCCTATGA+CGG - chr7.1:65409131-65409150 MS.gene040253:intron 45.0%
CGACAGAATCAGCAATTTCC+CGG - chr7.1:65408544-65408563 MS.gene040253:intron 45.0%
CTAGCATCCTTTCCAAGAGA+TGG - chr7.1:65408621-65408640 MS.gene040253:intron 45.0%
CTCGAAAATGAGCCTATGAC+GGG - chr7.1:65409132-65409151 MS.gene040253:intron 45.0%
CTCTATGCACATCTTGTGCT+GGG + chr7.1:65406798-65406817 None:intergenic 45.0%
CTGCAACTGAACACACAAAG+CGG + chr7.1:65409497-65409516 None:intergenic 45.0%
CTTTGGTAGGGAGAAAAGAG+AGG + chr7.1:65408589-65408608 None:intergenic 45.0%
GACAAACAAGACCTCGTGAA+TGG + chr7.1:65410009-65410028 None:intergenic 45.0%
GAGAGAGCTAGTGATGTTGA+CGG + chr7.1:65405317-65405336 None:intergenic 45.0%
GCCCAGCTCGTTTATTAACA+AGG - chr7.1:65408731-65408750 MS.gene040253:intron 45.0%
GCCCAGTCTTTCATGTTGTA+GGG - chr7.1:65408442-65408461 MS.gene040253:intron 45.0%
GCTCGTTTATTAACAAGGCC+AGG - chr7.1:65408736-65408755 MS.gene040253:intron 45.0%
GCTGCTTAGTGAAATGTCCT+AGG + chr7.1:65405682-65405701 None:intergenic 45.0%
GCTTAGTGAAATGTCCTAGG+TGG + chr7.1:65405679-65405698 None:intergenic 45.0%
GGTCATTGAAGTCAAGAGTG+AGG + chr7.1:65409256-65409275 None:intergenic 45.0%
GTCTCACTTTACTGACCTAG+TGG + chr7.1:65405558-65405577 None:intergenic 45.0%
GTGACAGATATGAGGGGATT+AGG + chr7.1:65408319-65408338 None:intergenic 45.0%
GTGGGTCAAATTAAGCAAGG+TGG + chr7.1:65409892-65409911 None:intergenic 45.0%
GTTAACCACTTCCACTTCAC+AGG + chr7.1:65409948-65409967 None:intergenic 45.0%
TAACCAAGACTTCAGCACGA+GGG - chr7.1:65407469-65407488 MS.gene040253:intron 45.0%
TAGGGAGAAAAGAGAGGATG+TGG + chr7.1:65408583-65408602 None:intergenic 45.0%
TATTTAACCCGTGCGTTGCA+CGG + chr7.1:65406321-65406340 None:intergenic 45.0%
TCACTAGCCAGAAGAGGTTT+GGG - chr7.1:65407424-65407443 MS.gene040253:intron 45.0%
TCCAAAAGCTTTCACACGCA+TGG - chr7.1:65406259-65406278 MS.gene040253:intron 45.0%
TCTCTTGGAAAGGATGCTAG+TGG + chr7.1:65408621-65408640 None:intergenic 45.0%
TGCCCAGTCTTTCATGTTGT+AGG - chr7.1:65408441-65408460 MS.gene040253:intron 45.0%
TGGCAGCAGATTCTTTGGTA+GGG + chr7.1:65408601-65408620 None:intergenic 45.0%
TGTGAGCGTGACAGATATGA+GGG + chr7.1:65408326-65408345 None:intergenic 45.0%
TGTGGCAGATAATTGAGTCC+GGG + chr7.1:65408565-65408584 None:intergenic 45.0%
TTAGCTCAGCTTGATCGTTC+AGG - chr7.1:65405193-65405212 MS.gene040253:CDS 45.0%
TTCACTAGCCAGAAGAGGTT+TGG - chr7.1:65407423-65407442 MS.gene040253:intron 45.0%
! ATCGATTCACTAGCCAGAAG+AGG - chr7.1:65407418-65407437 MS.gene040253:intron 45.0%
! CACATAATTGGCCTGTGAAG+TGG - chr7.1:65409934-65409953 MS.gene040253:CDS 45.0%
! CACTCAAAGTCTCTGACTTG+GGG - chr7.1:65407181-65407200 MS.gene040253:intron 45.0%
! TCCATGCGTGTGAAAGCTTT+TGG + chr7.1:65406263-65406282 None:intergenic 45.0%
!! ATCAACTCGGTAAGGGTACT+GGG + chr7.1:65408045-65408064 None:intergenic 45.0%
!! ATGAGCCTATGACGGGTAAT+AGG - chr7.1:65409139-65409158 MS.gene040253:intron 45.0%
!! GCAAGTCAGAAGGCGTTATT+GGG - chr7.1:65407521-65407540 MS.gene040253:intron 45.0%
!! GGCCTTGTTAATAAACGAGC+TGG + chr7.1:65408736-65408755 None:intergenic 45.0%
!! GTACTGGGTTAGTGAGTCAT+TGG + chr7.1:65408030-65408049 None:intergenic 45.0%
!! GTTTAGCCGGTTTGACTTTG+TGG + chr7.1:65406850-65406869 None:intergenic 45.0%
!! TGCAAGTCAGAAGGCGTTAT+TGG - chr7.1:65407520-65407539 MS.gene040253:intron 45.0%
!! TTGCTGATTCTGTCGACAGT+AGG + chr7.1:65408539-65408558 None:intergenic 45.0%
!! TTTCCTGGGCACATTGACTT+CGG + chr7.1:65406465-65406484 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr7.1:65406225-65406206 None:intergenic 45.0%
!!! TTTTGAAGTAGGCCAGGCTT+AGG - chr7.1:65409181-65409200 MS.gene040253:intron 45.0%
!! ATATATTAAACAAAATTTAT+TGG - chr7.1:65407774-65407793 MS.gene040253:intron 5.0%
!! TAAAAAAAATTATGTTAAAT+AGG + chr7.1:65407941-65407960 None:intergenic 5.0%
!! TATTAAAAAAAAACATAAAT+AGG + chr7.1:65406412-65406431 None:intergenic 5.0%
AACAAAGCGCGTGGAGTCAA+GGG + chr7.1:65405435-65405454 None:intergenic 50.0%
AAGAGTGAGGACGGAGAGTA+GGG + chr7.1:65409243-65409262 None:intergenic 50.0%
AATGAAACCCGTGCAACGCA+CGG - chr7.1:65406310-65406329 MS.gene040253:intron 50.0%
ACGATCAAGCTGAGCTAAGC+AGG + chr7.1:65405233-65405252 None:intergenic 50.0%
ACTCGGTCATCAACTCGGTA+AGG + chr7.1:65408053-65408072 None:intergenic 50.0%
ACTGCTCAGCTTGATCGTTC+AGG - chr7.1:65405151-65405170 MS.gene040253:CDS 50.0%
AGAAAGAGGGTTTGAGCGTG+AGG + chr7.1:65408381-65408400 None:intergenic 50.0%
AGAGCTAGTGATGTTGACGG+TGG + chr7.1:65405314-65405333 None:intergenic 50.0%
AGTAGGGGTGGAAATAGGCT+AGG + chr7.1:65409227-65409246 None:intergenic 50.0%
AGTGTGCTCTGCAAGTCAGA+AGG - chr7.1:65407511-65407530 MS.gene040253:intron 50.0%
ATCAAGCTGAGCTAAGCAGG+TGG + chr7.1:65405230-65405249 None:intergenic 50.0%
ATGCACATCTTGTGCTGGGA+TGG + chr7.1:65406794-65406813 None:intergenic 50.0%
ATTCATGCTGTTGCCCAACG+TGG - chr7.1:65409419-65409438 MS.gene040253:intron 50.0%
ATTTAACCCGTGCGTTGCAC+GGG + chr7.1:65406320-65406339 None:intergenic 50.0%
CATCCAAAGAAAGGCCCACT+AGG - chr7.1:65405540-65405559 MS.gene040253:CDS 50.0%
CCAAGAGATGGAACCCATTG+TGG - chr7.1:65408633-65408652 MS.gene040253:intron 50.0%
CGTGAGGAAGATGAGAGGAA+GGG + chr7.1:65408365-65408384 None:intergenic 50.0%
CTCGGTCATCAACTCGGTAA+GGG + chr7.1:65408052-65408071 None:intergenic 50.0%
CTGCAGCGTGATGTTTCTCA+AGG + chr7.1:65409330-65409349 None:intergenic 50.0%
GAGTCAACTAGAGAGCAGGA+GGG - chr7.1:65405587-65405606 MS.gene040253:CDS 50.0%
GATGAGAGGAAGGGTTTGTG+GGG + chr7.1:65408356-65408375 None:intergenic 50.0%
GCCCAGGAAAAAGAAGGAAC+AGG - chr7.1:65406475-65406494 MS.gene040253:intron 50.0%
GCCTGGCCTAGCCTATTTAA+AGG + chr7.1:65409112-65409131 None:intergenic 50.0%
GCCTTTAAATAGGCTAGGCC+AGG - chr7.1:65409108-65409127 MS.gene040253:intron 50.0%
GCTAGTGGCAGCAGATTCTT+TGG + chr7.1:65408606-65408625 None:intergenic 50.0%
GTAACCAAGACTTCAGCACG+AGG - chr7.1:65407468-65407487 MS.gene040253:intron 50.0%
GTCCAGGCCCATTAATCTTG+AGG + chr7.1:65405521-65405540 None:intergenic 50.0%
GTGAGCGTGACAGATATGAG+GGG + chr7.1:65408325-65408344 None:intergenic 50.0%
GTGCTCTTGGAATTCCACCT+AGG - chr7.1:65405662-65405681 MS.gene040253:CDS 50.0%
GTGGCAGCAGATTCTTTGGT+AGG + chr7.1:65408602-65408621 None:intergenic 50.0%
TAACCGAAGTCAATGTGCCC+AGG - chr7.1:65406459-65406478 MS.gene040253:intron 50.0%
TTGAGCGTGAGGAAGATGAG+AGG + chr7.1:65408370-65408389 None:intergenic 50.0%
! ATTGGCCTGTGAAGTGGAAG+TGG - chr7.1:65409940-65409959 MS.gene040253:CDS 50.0%
! CATCAACTCGGTAAGGGTAC+TGG + chr7.1:65408046-65408065 None:intergenic 50.0%
! CCACAATGGGTTCCATCTCT+TGG + chr7.1:65408636-65408655 None:intergenic 50.0%
! CCGTCATAGGCTCATTTTCG+AGG + chr7.1:65409134-65409153 None:intergenic 50.0%
! GACCTCAAGATTAATGGGCC+TGG - chr7.1:65405516-65405535 MS.gene040253:CDS 50.0%
! TCTGACTTGCAGAGCACACT+AGG + chr7.1:65407511-65407530 None:intergenic 50.0%
! TGACCTAGTGGGCCTTTCTT+TGG + chr7.1:65405546-65405565 None:intergenic 50.0%
! TTGACTCCACGCGCTTTGTT+CGG - chr7.1:65405435-65405454 MS.gene040253:CDS 50.0%
!! AACCGACTCGGTCATCAACT+CGG + chr7.1:65408058-65408077 None:intergenic 50.0%
!! ATAGGCTCATTTTCGAGGCC+TGG + chr7.1:65409129-65409148 None:intergenic 50.0%
!! GGCCGAGCTAGGCTTTAAAT+AGG + chr7.1:65408714-65408733 None:intergenic 50.0%
!! TACCGAGTTGATGACCGAGT+CGG - chr7.1:65408053-65408072 MS.gene040253:intron 50.0%
ACCCATTGTGGCTCTCCGTT+AGG - chr7.1:65408645-65408664 MS.gene040253:intron 55.0%
AGAGTGAGGACGGAGAGTAG+GGG + chr7.1:65409242-65409261 None:intergenic 55.0%
ATGAAACCCGTGCAACGCAC+GGG - chr7.1:65406311-65406330 MS.gene040253:intron 55.0%
ATTTGTCCGTGCAGGACGTG+TGG + chr7.1:65405397-65405416 None:intergenic 55.0%
CAAGAGTGAGGACGGAGAGT+AGG + chr7.1:65409244-65409263 None:intergenic 55.0%
CAGTCGTTCCGCCTCAAATG+TGG - chr7.1:65409356-65409375 MS.gene040253:intron 55.0%
CCATTGTGGCTCTCCGTTAG+GGG - chr7.1:65408647-65408666 MS.gene040253:intron 55.0%
CCCATTGTGGCTCTCCGTTA+GGG - chr7.1:65408646-65408665 MS.gene040253:intron 55.0%
CCCTAACGGAGAGCCACAAT+GGG + chr7.1:65408649-65408668 None:intergenic 55.0%
CCTGGCCTATTACCCGTCAT+AGG + chr7.1:65409147-65409166 None:intergenic 55.0%
CGGAGAGTAGGGGTGGAAAT+AGG + chr7.1:65409232-65409251 None:intergenic 55.0%
CTCACGTCATTTGTCCGTGC+AGG + chr7.1:65405405-65405424 None:intergenic 55.0%
GAACAAAGCGCGTGGAGTCA+AGG + chr7.1:65405436-65405455 None:intergenic 55.0%
GAACCCTCGTGCTGAAGTCT+TGG + chr7.1:65407475-65407494 None:intergenic 55.0%
GATGAAGCCTGCCTCGACAT+AGG - chr7.1:65406913-65406932 MS.gene040253:intron 55.0%
GCGTGAGGAAGATGAGAGGA+AGG + chr7.1:65408366-65408385 None:intergenic 55.0%
GCTCATCTGTACTAGGCACG+TGG + chr7.1:65405490-65405509 None:intergenic 55.0%
GGAGTCAACTAGAGAGCAGG+AGG - chr7.1:65405586-65405605 MS.gene040253:CDS 55.0%
GGCTTAGGCCTTACAAAGCC+CGG - chr7.1:65409196-65409215 MS.gene040253:intron 55.0%
GGGCCTGGACATCCAAAGAA+AGG - chr7.1:65405531-65405550 MS.gene040253:CDS 55.0%
GGGCCTTTCTTTGGATGTCC+AGG + chr7.1:65405537-65405556 None:intergenic 55.0%
TGAGAGGATCAGTGAGCGAG+TGG + chr7.1:65406684-65406703 None:intergenic 55.0%
! CACATTTGAGGCGGAACGAC+TGG + chr7.1:65409358-65409377 None:intergenic 55.0%
! GGCTTTGTAAGGCCTAAGCC+TGG + chr7.1:65409196-65409215 None:intergenic 55.0%
! TTTGAGGCGGAACGACTGGA+TGG + chr7.1:65409354-65409373 None:intergenic 55.0%
!! CCTATGACGGGTAATAGGCC+AGG - chr7.1:65409144-65409163 MS.gene040253:intron 55.0%
!! GTTCGAGAGGGGGCATTTCA+AGG + chr7.1:65409460-65409479 None:intergenic 55.0%
AACGTGCCACACGTCCTGCA+CGG - chr7.1:65405388-65405407 MS.gene040253:intron 60.0%
ACGGGTAATAGGCCAGGCTC+AGG - chr7.1:65409150-65409169 MS.gene040253:intron 60.0%
AGCTTAATAGGCCGGCCCGA+CGG + chr7.1:65408831-65408850 None:intergenic 60.0%
CCCCTAACGGAGAGCCACAA+TGG + chr7.1:65408650-65408669 None:intergenic 60.0%
GAGAGGAAGGGTTTGTGGGG+TGG + chr7.1:65408353-65408372 None:intergenic 60.0%
GGGGTGGAAATAGGCTAGGC+CGG + chr7.1:65409223-65409242 None:intergenic 60.0%
GGGTGGAAATAGGCTAGGCC+GGG + chr7.1:65409222-65409241 None:intergenic 60.0%
TAAACGAGCTGGGCCGAGCT+AGG + chr7.1:65408725-65408744 None:intergenic 60.0%
TCTCCGTTAGGGGTGGGAAC+AGG - chr7.1:65408657-65408676 MS.gene040253:intron 60.0%
TGGCCTGTTCCCACCCCTAA+CGG + chr7.1:65408663-65408682 None:intergenic 60.0%
TGTGGCTCTCCGTTAGGGGT+GGG - chr7.1:65408651-65408670 MS.gene040253:intron 60.0%
TTGTGGCTCTCCGTTAGGGG+TGG - chr7.1:65408650-65408669 MS.gene040253:intron 60.0%
! TTGTTCGGACGAGCACTGCG+AGG - chr7.1:65405450-65405469 MS.gene040253:CDS 60.0%
AGGCCTTACAAAGCCCGGCC+CGG - chr7.1:65409201-65409220 MS.gene040253:intron 65.0%
GAAATAGGCTAGGCCGGGCC+GGG + chr7.1:65409217-65409236 None:intergenic 65.0%
GCCTATTAAGCCCGTCGGGC+CGG - chr7.1:65408817-65408836 MS.gene040253:intron 65.0%
GCTAGGCCATAGGCCCCTGT+CGG + chr7.1:65408692-65408711 None:intergenic 65.0%
GCTCGTCCGAACAAAGCGCG+TGG + chr7.1:65405444-65405463 None:intergenic 65.0%
GCTTAATAGGCCGGCCCGAC+GGG + chr7.1:65408830-65408849 None:intergenic 65.0%
GGAAATAGGCTAGGCCGGGC+CGG + chr7.1:65409218-65409237 None:intergenic 65.0%
GTGAGGACGGAGAGTAGGGG+TGG + chr7.1:65409239-65409258 None:intergenic 65.0%
GTTAGGGGTGGGAACAGGCC+AGG - chr7.1:65408662-65408681 MS.gene040253:intron 65.0%
AACAGGCCAGGCCGTCCGAC+AGG - chr7.1:65408674-65408693 MS.gene040253:intron 70.0%
ACAGGCCAGGCCGTCCGACA+GGG - chr7.1:65408675-65408694 MS.gene040253:intron 70.0%
GGCCATAGGCCCCTGTCGGA+CGG + chr7.1:65408688-65408707 None:intergenic 70.0%
! AGGCCGGGCCGGGCTTTGTA+AGG + chr7.1:65409207-65409226 None:intergenic 70.0%
! GCCGGCCCGACGGGCTTAAT+AGG + chr7.1:65408821-65408840 None:intergenic 70.0%
CAGGCCAGGCCGTCCGACAG+GGG - chr7.1:65408676-65408695 MS.gene040253:intron 75.0%
GGCCGTCCGACAGGGGCCTA+TGG - chr7.1:65408683-65408702 MS.gene040253:intron 75.0%
TAGGCCCCTGTCGGACGGCC+TGG + chr7.1:65408683-65408702 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 65405100 65410040 65405100 ID=MS.gene040253
chr7.1 mRNA 65405100 65410040 65405100 ID=MS.gene040253.t1;Parent=MS.gene040253
chr7.1 exon 65409721 65410040 65409721 ID=MS.gene040253.t1.exon1;Parent=MS.gene040253.t1
chr7.1 CDS 65409721 65410040 65409721 ID=cds.MS.gene040253.t1;Parent=MS.gene040253.t1
chr7.1 exon 65405395 65405836 65405395 ID=MS.gene040253.t1.exon2;Parent=MS.gene040253.t1
chr7.1 CDS 65405395 65405836 65405395 ID=cds.MS.gene040253.t1;Parent=MS.gene040253.t1
chr7.1 exon 65405100 65405276 65405100 ID=MS.gene040253.t1.exon3;Parent=MS.gene040253.t1
chr7.1 CDS 65405100 65405276 65405100 ID=cds.MS.gene040253.t1;Parent=MS.gene040253.t1
Gene Sequence

>MS.gene040253

ATGGAGGACCATACCACGTGGACTCTTATATACATTGATTGTTCAACATGTACTGCTCAGCTTGATCGTTCAGGTCACGTGAGCTCCACCTTCTTAGCTCAGCTTGATCGTTCAGGTAACGTGAGCTCCACCTGCTTAGCTCAGCTTGATCGTTCAGTTCACATGAGCTCCACATGCTTAGCTCAGTTTGATTGTCTAAGTCATGTGATCACCACCGTCAACATCACTAGCTCTCTCTCACGTCGTTGTCTGAGTAACATTGTGGTCCTCCTCTTAAGAGCATCTCATAACGTGCCACACGTCCTGCACGGACAAATGACGTGAGTTGTGTACCCTTGACTCCACGCGCTTTGTTCGGACGAGCACTGCGAGGAATCTTAATCAACTCCACGTGCCTAGTACAGATGAGCCATATGGACCTCAAGATTAATGGGCCTGGACATCCAAAGAAAGGCCCACTAGGTCAGTAAAGTGAGACCTATAAAAGGAGTCAACTAGAGAGCAGGAGGGAGAAGAATCGATGATCTCAAACACTGTATTTTACATCTAAGTCTTATTCAGAGTGCTCTTGGAATTCCACCTAGGACATTTCACTAAGCAGCTCGCCTGTTGTAATTTAACTTATGTTTACATACGTGAACAGTTATATAACAGGAGATGTTGATATCATATATTTGCATTTATGTTTTGCTTATTTTACGCTCATTTGTGAGACAACAAAATTTTATTTTAAGCATTCGATTGTATGGAGAATTCGGGAAATTGTGTTTTGATCCATTTAAGTGTCTTTCCATAAAAAAGAACAATTTTTTTTTGGGTTACAAGACAAGAAAGTTTAACACATACTCCCTCCGTTTCAAAATGAGTGTCGTTTCAGCCAAAAAAAATTGTTTCAAAATGAATGTCGCTTTCAGTTTCCAATGCAATAATAACTTTTTTTTTTTCAATTGTACCCTTCAATTAATACTATGTTACACAAACTTCCAAAGGATTATTTTTTTCTTTAATGAAAAACAAACCAATAGTTGATTAGGATAATTTGGTAAAATTGCTATGACATTTGAGTACTTTATTCCATTCCTTAATTTGTGTGCAGTTGGCTAAAGCGACACTCATTTTGAAACGGAAGGAGTATTTTGTACCTCCCAGATCAAGTTTTTCCAAAAGCTTTCACACGCATGGAAAAAAAAAACCCATTTAAGCACATTTTAATGAAACCCGTGCAACGCACGGGTTAAATACCTAGTGTATGGTAAAGTTTTTCTAAATCAACACATGACAGCTTCAAATATCACACTATATTCGGGAACCTATTTATGTTTTTTTTTAATAAGCTACAAGTAGATAAAAAAGGAAAAATAACCGAAGTCAATGTGCCCAGGAAAAAGAAGGAACAGGAAAAAGATAGAAAACCAAAACTAAACTAAAGAGTGACATGAGATAATAATCAAAGTATAAAGTGACTACTCTCATTCACCACTCACGCATTCATTCTAAAACGCAATCAAATTAACTCTTTCTTTCTTTTTCTTTTTTAACAAACAAATAAAACTTCTTTTCTTTCAAACACAGTCAAATTCACCACTCGCTCACTGATCCTCTCACTCATTGTTTCTTTTAATAAACCTAACATTCACTATTATACTAAATATTTCTTCTCTTGAAGCGAAATGAACTAACGTAAATAGTTACCATCCCAGCACAAGATGTGCATAGAGTCGAAATCAAGAAAAGTCGCACATATGTACCACAAAGTCAAACCGGCTAAACAAAATGAAAAATCGCTAAGTGGTCATTCCAAGACAAACTAATGGATGAAGCCTGCCTCGACATAGGTTGTTTTGATGATGTAGTCTTAGGTTATTTTGATGATGTCTTTAATAATTAGTGGTTTGTTATTTAGCATGTTGTTCCTTTATTAGTTTGCTTAGATTTTGTTAAAGCACCCAAGTAATCTATGTATCTTAGCAATGTTTGATTCCTTGTGTTCTAGTTAGCTTATGGCCCAAGTAAATCTCATTTCTGGTGTCAAAATTGAAGTTTCTGATGTTTGAATCAATTCTTTTATACTTGAATCGTATCACTCAAAGTCTCTGACTTGGGGATAATCGTTTCATTATATTATGAATCGATTCACTTTTGAATCGAGTCATATTTTCCTGAATAGTATCATGAAAACTTTCTGACTTATATTGAATCGATTCAATGAAATATGAATCGTTTCAATCTTCATCCTGGACTTATTTTGAATCGATTCAAATTGTGTCTGAATCATATCAATCATCATAGTTCATCTGGCTTGTCCTCTTACTGTCTGAATCGATTCACTAGCCAGAAGAGGTTTGGGAGAATTAGTGTTTCTAAACGTGTAACCAAGACTTCAGCACGAGGGTTCTATTTATAGAACTCCTAGTGTGCTCTGCAAGTCAGAAGGCGTTATTGGGCTTCCGTAAGCCCAATAACTAGTTTAGTCTTTTGCTAACTAATTAGCGTTATTTGCTAAACGCACCCATCATATAAGTATTATTATTGTTGTTGTTGTTGTTGTTGTTGTTATTATTATTATTATTATTATTATTATTATTATTATTATTGTATATTTTTGTTTTTTTTGAAAGGATTATATATTTTTTTTGAAAGGATATATAATTAGTAATATACATATTTTATTAATATATATTAAACAAAATTTATTGGTAAATAATGTCATTTTCATCAAATATAGGTGTTTTATATTCACTAAAAAATGTTTTATTTATTTAGAAACTTGGAGTTCAATTATTTTTGACATTTTATAAGTGTAATCTTTTAAAAAAATGTTGAGCCACCCGATTTAATCCTATTTAACATAATTTTTTTTATAAAGACCAAGTTATATAATCGAGTCATCCGATTCAGTAATATGGTTCAATGATTAAGTGGTTCGACCAATGACTCACTAACCCAGTACCCTTACCGAGTTGATGACCGAGTCGGTTTTTAAAACTATGCTGGATAATGGAGATTGTGCAATTGAAAAGCTAGTTGGAAGTTGAAACAGTCACCGTAAGTTGTAACAACAAATAAATTCCTACTAATATTTTGCATCGATGATGTTACCCACGTTTTGCTTTTTCTCTCTTCAATAGTGCGTTTTTTAATTAATTTTCTCTTTGTAATTCTCACTCGTTGGATTAAGAGTTGGAAGGGATCCGGTTCCCTATCAAATACACAAACCCTAATCCCCTCATATCTGTCACGCTCACATGTTCCACCCCACAAACCCTTCCTCTCATCTTCCTCACGCTCAAACCCTCTTTCTTCCAACGATCTGATTCATCTCTCAAACTCTCTCTAGAATCTGCCCAGTCTTTCATGTTGTAGGGGTATATTGATTGTGCCCTAGCTTTGACTGTCATTCTGATTCTCAGTTAAAATGTCTTCGCAGCGTTCGATTCCTACTGTCGACAGAATCAGCAATTTCCCGGACTCAATTATCTGCCACATCCTCTCTTTTCTCCCTACCAAAGAATCTGCTGCCACTAGCATCCTTTCCAAGAGATGGAACCCATTGTGGCTCTCCGTTAGGGGTGGGAACAGGCCAGGCCGTCCGACAGGGGCCTATGGCCTAGCCTATTTAAAGCCTAGCTCGGCCCAGCTCGTTTATTAACAAGGCCAGGCTCAAGCTTTTTATAAAGCCTATTTAATTAAATAGGCCAGGCTAAGGCTTACAAAAAAGCCTATTAAGCCCGTCGGGCCGGCCTATTAAGCTTTTTATGTATAATATATCTTCCATTATTGATATCGTTGAAGTTTTTTTTCTCATAAACTCAAGCCTTCATAAGATTAGTTATTTAGTAGCACATATATTGTTGTGATTATACCTTCATAAGATTTCATTATTTAGTTGCAGATATATTCATGTGCTTTAGGCCTTCGTAAATTTTGGCCTATTTAGCAGTAGGCTTATATGTGTTGCTAGACTTTGGTGTAAAATAGGCTTTTAAATAGGCTTCCAGGCTTCATCAGGCCTTTAAATAGGCTAGGCCAGGCCTCGAAAATGAGCCTATGACGGGTAATAGGCCAGGCTCAGGCCTATAATTTTTGAAGTAGGCCAGGCTTAGGCCTTACAAAGCCCGGCCCGGCCTAGCCTATTTCCACCCCTACTCTCCGTCCTCACTCTTGACTTCAATGACCAAAACTTTACAGAATTCGCCACTTTTAGACATTTTGTCTACTCAGTCATTGCCTTGAGAAACATCACGCTGCAGACCATCCAGTCGTTCCGCCTCAAATGTGGTAACTCTTCTGGCTTTAACCCGCATGATGTCAAGAGATTTATTCATGCTGTTGCCCAACGTGGAATTCAGAATCTTGACCTTGAAATGCCCCCTCTCGAACATAGCTTTAATTTACCGCTTTGTGTGTTCAGTTGCAGTAAGCTCACTTCTCTTAAGTTGAAGGAGTTAGACATAAATTATACTTCCGAATCCGATTTCAATTTTCCCTTACTCAAAACTCTTCATCTGGATACAATCTCTTTTGGTATAGATTGTGATTGTTTTCTTAGGCTTCTCAAAGGGTGTCCAATTTTAGAGGATTTGGAAACAAAAGATTTATTGCTTGATTATTCTAACACGGGAATGTATTCGATGTTATTCAAAGTGGTCAGTGCAAATATTCTGAACTAATGTTCATAATGCGAAGTTTCTATCAATGGCTTTCTAACAAAGTTTTAAAACAAATTTTGCTGATTTCTAATGTTTGTTTTTGTAACTTATGCAGTACTTCCGACAAAAGTACCGAATTCCCACCTTGCTTAATTTGACCCACATGAAGATTGTATTTGAATTGACACATAATTGGCCTGTGAAGTGGAAGTGGTTAACAAAAGTGCTCCAACATTGTCCTAAGCTTCAGAATCTTACCATTCACGAGGTCTTGTTTGTCGATGCTAAATGA
Protein sequence

>MS.gene040253.t1

MEDHTTWTLIYIDCSTCTAQLDRSGHVSSTFLAQLDRSGNVSSTCLAQLDRSVHMSSTCLAQFDCLSHVITTVNITSSLSRRCLSNIVVLLLRASHNVPHVLHGQMTHFVYSVIALRNITLQTIQSFRLKCGNSSGFNPHDVKRFIHAVAQRGIQNLDLEMPPLEHSFNLPLCVFSCSKLTSLKLKELDINYTSESDFNFPLLKTLHLDTISFGIDCDCFLRLLKGCPILEDLETKDLLLDYSNTGMYSMLFKVYFRQKYRIPTLLNLTHMKIVFELTHNWPVKWKWLTKVLQHCPKLQNLTIHEVLFVDAK