AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68081


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68081.t1 MTR_1g090883 69.429 350 103 2 2 351 12 357 7.55e-169 475
MS.gene68081.t1 MTR_4g056040 62.467 381 109 4 1 351 1 377 2.14e-148 428
MS.gene68081.t1 MTR_4g056020 64.857 350 119 3 1 350 1 346 2.83e-146 421
MS.gene68081.t1 MTR_4g056030 63.143 350 125 3 1 350 1 346 4.55e-140 405
MS.gene68081.t1 MTR_4g056070 58.568 391 118 5 1 351 1 387 1.15e-137 398
MS.gene68081.t1 MTR_1g038710 63.277 354 120 5 1 348 11 360 1.20e-137 399
MS.gene68081.t1 MTR_4g055990 58.656 387 119 5 1 350 1 383 1.12e-133 390
MS.gene68081.t1 MTR_4g055990 58.656 387 119 5 1 350 1 383 2.33e-133 390
MS.gene68081.t1 MTR_4g055580 58.915 387 117 6 1 350 92 473 1.03e-130 386
MS.gene68081.t1 MTR_1g090900 92.697 178 13 0 1 178 1 178 3.93e-115 332
MS.gene68081.t1 MTR_4g093690 56.827 271 104 9 7 272 14 276 2.20e-80 246
MS.gene68081.t1 MTR_7g110920 53.360 253 79 3 101 351 1 216 5.32e-74 232
MS.gene68081.t1 MTR_4g056010 70.968 93 26 1 75 167 6 97 2.33e-34 122
MS.gene68081.t1 MTR_5g084070 32.219 329 183 14 5 322 7 306 8.51e-20 90.5
MS.gene68081.t1 MTR_4g056020 80.000 50 10 0 301 350 1 50 1.45e-19 85.1
MS.gene68081.t1 MTR_8g445780 29.167 360 214 13 9 351 11 346 2.11e-19 89.0
MS.gene68081.t1 MTR_4g032730 28.981 314 187 10 4 298 8 304 1.16e-18 87.0
MS.gene68081.t1 MTR_8g467800 30.904 343 201 14 4 332 13 333 2.19e-18 85.5
MS.gene68081.t1 MTR_8g467800 30.168 358 220 13 4 348 13 353 3.31e-18 85.9
MS.gene68081.t1 MTR_7g033945 34.463 177 101 4 1 167 1 172 4.92e-18 81.3
MS.gene68081.t1 MTR_4g080590 29.121 364 210 15 10 350 22 360 7.26e-18 84.3
MS.gene68081.t1 MTR_4g080590 29.121 364 210 15 10 350 22 360 7.96e-18 84.7
MS.gene68081.t1 MTR_6g011460 33.466 251 130 11 11 245 46 275 8.28e-18 84.3
MS.gene68081.t1 MTR_1g041245 33.166 199 120 4 1 195 1 190 8.70e-18 84.0
MS.gene68081.t1 MTR_8g014260 27.957 372 216 13 8 351 13 360 1.40e-17 84.0
MS.gene68081.t1 MTR_7g034115 37.037 189 106 6 11 195 11 190 2.56e-17 82.8
MS.gene68081.t1 MTR_5g080710 31.366 322 182 15 11 313 33 334 4.32e-17 82.4
MS.gene68081.t1 MTR_8g062270 28.611 360 216 13 11 348 16 356 1.19e-16 81.3
MS.gene68081.t1 MTR_5g039950 27.809 356 193 13 10 350 22 328 1.85e-16 80.5
MS.gene68081.t1 MTR_3g048290 26.703 367 234 11 7 350 19 373 3.85e-16 79.7
MS.gene68081.t1 MTR_7g033915 35.948 153 86 3 1 143 1 151 9.56e-16 77.8
MS.gene68081.t1 MTR_8g468840 27.673 318 200 11 10 309 13 318 1.37e-15 77.8
MS.gene68081.t1 MTR_7g007080 33.772 228 120 11 9 221 2 213 1.63e-15 77.4
MS.gene68081.t1 MTR_8g468760 30.208 288 163 12 5 271 3 273 1.93e-15 77.4
MS.gene68081.t1 MTR_8g468810 29.801 302 183 14 6 292 20 307 4.96e-15 75.5
MS.gene68081.t1 MTR_7g032380 32.203 177 110 3 1 172 1 172 5.34e-15 75.5
MS.gene68081.t1 MTR_8g468810 29.121 364 223 17 6 350 20 367 5.85e-15 75.5
MS.gene68081.t1 MTR_8g468810 29.801 302 183 14 6 292 20 307 6.00e-15 75.1
MS.gene68081.t1 MTR_4g081030 29.412 340 195 14 7 327 13 326 8.56e-15 75.1
MS.gene68081.t1 MTR_8g468810 29.801 302 183 14 6 292 20 307 8.83e-15 75.1
MS.gene68081.t1 MTR_3g023630 29.630 243 138 6 9 235 6 231 1.15e-14 74.7
MS.gene68081.t1 MTR_7g055943 25.634 355 180 11 11 351 40 324 1.18e-14 75.1
MS.gene68081.t1 MTR_3g099900 26.176 340 205 13 8 325 15 330 2.13e-14 73.9
MS.gene68081.t1 MTR_7g056447 35.323 201 111 7 4 198 2 189 3.65e-14 72.4
MS.gene68081.t1 MTR_3g014590 26.774 310 208 7 1 302 1 299 4.53e-14 72.8
MS.gene68081.t1 MTR_7g115270 34.000 200 107 9 10 195 11 199 4.96e-14 73.2
MS.gene68081.t1 MTR_4g039440 26.836 354 177 16 11 351 34 318 6.15e-14 72.8
MS.gene68081.t1 MTR_2g083840 27.869 305 186 12 9 294 19 308 7.21e-14 72.8
MS.gene68081.t1 MTR_3g014550 26.214 309 212 5 1 302 1 300 8.46e-14 72.0
MS.gene68081.t1 MTR_5g005690 28.111 217 144 4 7 219 17 225 9.69e-14 72.4
MS.gene68081.t1 MTR_6g022360 29.437 231 116 9 11 221 43 246 9.96e-14 72.0
MS.gene68081.t1 MTR_7g098570 31.780 236 139 9 11 235 20 244 1.53e-13 72.0
MS.gene68081.t1 MTR_3g107100 28.889 360 175 17 1 348 1 291 1.93e-13 71.2
MS.gene68081.t1 MTR_8g085430 30.899 178 106 4 11 176 11 183 1.96e-13 70.9
MS.gene68081.t1 MTR_1g085120 32.828 198 105 7 11 196 179 360 1.97e-13 71.6
MS.gene68081.t1 MTR_2g005990 30.882 204 118 7 11 198 6 202 3.07e-13 70.5
MS.gene68081.t1 MTR_1g085120 32.828 198 105 7 11 196 167 348 3.15e-13 70.9
MS.gene68081.t1 MTR_1g085120 32.828 198 105 7 11 196 92 273 3.61e-13 70.5
MS.gene68081.t1 MTR_4g050930 25.680 331 226 8 5 326 23 342 5.90e-13 69.7
MS.gene68081.t1 MTR_3g087260 27.778 378 211 13 10 351 11 362 7.83e-13 69.7
MS.gene68081.t1 MTR_4g050930 25.680 331 226 8 5 326 23 342 1.02e-12 69.3
MS.gene68081.t1 MTR_7g039630 28.610 367 186 14 10 350 22 338 1.22e-12 68.6
MS.gene68081.t1 MTR_2g007500 31.120 241 117 12 4 222 7 220 1.42e-12 68.2
MS.gene68081.t1 MTR_6g022500 31.579 228 122 9 11 219 101 313 1.60e-12 68.6
MS.gene68081.t1 MTR_8g062310 31.696 224 128 10 1 217 15 220 1.87e-12 68.6
MS.gene68081.t1 MTR_7g033940 35.433 127 74 3 13 134 96 219 2.44e-12 66.2
MS.gene68081.t1 MTR_4g024680 31.122 196 106 8 7 201 518 685 4.24e-12 67.8
MS.gene68081.t1 MTR_8g014160 27.900 319 184 11 4 295 34 333 5.06e-12 67.0
MS.gene68081.t1 MTR_7g056287 25.568 352 177 14 11 351 3 280 5.38e-12 66.6
MS.gene68081.t1 MTR_4g045680 26.984 315 202 11 8 308 13 313 5.81e-12 66.6
MS.gene68081.t1 MTR_7g017280 25.217 345 226 11 4 324 141 477 1.17e-11 66.2
MS.gene68081.t1 MTR_4g090940 27.193 342 210 10 5 326 153 475 1.49e-11 65.9
MS.gene68081.t1 MTR_3g108150 31.441 229 134 9 6 224 8 223 2.04e-11 65.1
MS.gene68081.t1 MTR_1g053025 29.787 235 133 9 11 222 2 227 2.42e-11 64.7
MS.gene68081.t1 MTR_7g056433 31.646 237 132 12 6 230 7 225 3.15e-11 64.3
MS.gene68081.t1 MTR_6g025270 23.481 362 238 9 6 346 29 372 3.24e-11 64.3
MS.gene68081.t1 MTR_4g092300 26.190 336 227 6 5 326 19 347 3.74e-11 64.7
MS.gene68081.t1 MTR_4g051480 26.190 336 227 6 5 326 19 347 3.91e-11 64.7
MS.gene68081.t1 MTR_3g108560 28.653 349 175 15 8 351 17 296 4.44e-11 63.5
MS.gene68081.t1 MTR_3g108560 28.653 349 175 15 8 351 17 296 4.44e-11 63.9
MS.gene68081.t1 MTR_7g032370 26.984 252 158 8 22 257 1 242 4.55e-11 63.9
MS.gene68081.t1 MTR_7g098510 33.529 170 99 5 11 173 18 180 4.81e-11 63.9
MS.gene68081.t1 MTR_3g019240 26.331 338 213 12 7 326 22 341 5.11e-11 63.9
MS.gene68081.t1 MTR_1089s0010 31.148 183 99 5 5 173 2 171 6.88e-11 63.5
MS.gene68081.t1 MTR_4g024780 29.126 206 132 8 2 201 136 333 7.95e-11 63.5
MS.gene68081.t1 MTR_7g033990 33.571 140 85 4 1 134 1 138 8.40e-11 63.2
MS.gene68081.t1 MTR_7g034110 33.613 119 74 3 1 117 1 116 8.62e-11 62.8
MS.gene68081.t1 MTR_7g056277 25.000 352 179 13 11 351 259 536 9.35e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68081.t1 AT3G59190 30.749 374 213 12 10 351 11 370 4.41e-29 116
MS.gene68081.t1 AT3G59190 30.749 374 213 12 10 351 11 370 1.31e-28 116
MS.gene68081.t1 AT3G59230 28.947 380 218 12 10 351 11 376 9.86e-27 110
MS.gene68081.t1 AT4G10400 32.184 348 195 15 11 350 2 316 1.64e-25 106
MS.gene68081.t1 AT4G10400 32.184 348 195 15 11 350 2 316 1.64e-25 106
MS.gene68081.t1 AT4G10400 32.184 348 195 15 11 350 2 316 1.64e-25 106
MS.gene68081.t1 AT4G14103 28.962 366 219 13 10 351 7 355 2.80e-24 102
MS.gene68081.t1 AT4G14103 28.962 366 219 13 10 351 7 355 2.80e-24 102
MS.gene68081.t1 AT4G14103 29.428 367 216 14 10 351 7 355 6.03e-24 102
MS.gene68081.t1 AT5G41840 27.907 387 218 11 11 351 14 385 1.39e-23 102
MS.gene68081.t1 AT4G00315 29.282 362 209 16 11 348 2 340 5.37e-23 99.8
MS.gene68081.t1 AT2G42720 30.518 367 208 14 11 351 2 347 5.72e-23 99.8
MS.gene68081.t1 AT4G14096 28.926 363 216 14 10 351 7 348 1.98e-22 98.2
MS.gene68081.t1 AT4G14096 28.926 363 216 14 10 351 7 348 1.98e-22 98.2
MS.gene68081.t1 AT5G60610 29.558 362 193 17 11 351 2 322 7.80e-22 95.9
MS.gene68081.t1 AT5G60610 29.558 362 193 17 11 351 2 322 7.80e-22 95.9
MS.gene68081.t1 AT5G41830 28.307 378 225 13 7 351 9 373 9.44e-22 96.7
MS.gene68081.t1 AT4G09920 31.186 295 182 10 11 299 2 281 1.30e-21 93.6
MS.gene68081.t1 AT4G09920 31.186 295 182 10 11 299 2 281 1.30e-21 93.6
MS.gene68081.t1 AT4G09920 31.186 295 182 10 11 299 2 281 1.30e-21 93.6
MS.gene68081.t1 AT4G26340 28.653 349 212 12 11 350 2 322 2.22e-21 94.7
MS.gene68081.t1 AT5G56370 29.310 348 204 16 11 350 2 315 1.75e-20 91.3
MS.gene68081.t1 AT4G09920 31.058 293 181 10 11 297 2 279 2.45e-20 90.5
MS.gene68081.t1 AT4G09920 31.058 293 181 10 11 297 2 279 2.45e-20 90.5
MS.gene68081.t1 AT1G55660 28.177 362 213 17 11 348 53 391 2.80e-20 92.0
MS.gene68081.t1 AT3G59200 28.684 380 212 14 10 351 6 364 3.22e-20 90.9
MS.gene68081.t1 AT5G56370 29.513 349 202 17 11 350 2 315 3.81e-20 91.3
MS.gene68081.t1 AT5G56370 29.513 349 202 17 11 350 2 315 3.81e-20 91.3
MS.gene68081.t1 AT4G00320 27.034 381 226 12 7 351 9 373 3.93e-20 91.7
MS.gene68081.t1 AT3G58960 27.473 364 226 13 11 350 2 351 4.15e-20 91.7
MS.gene68081.t1 AT3G59160 25.126 398 225 13 10 351 12 392 8.32e-20 90.5
MS.gene68081.t1 AT3G59200 28.684 380 212 14 10 351 6 364 1.32e-19 90.1
MS.gene68081.t1 AT2G26860 28.286 350 220 11 11 350 2 330 1.36e-19 89.7
MS.gene68081.t1 AT2G26860 28.286 350 220 11 11 350 2 330 1.36e-19 89.7
MS.gene68081.t1 AT1G55660 28.840 319 182 14 11 301 53 354 2.35e-19 88.6
MS.gene68081.t1 AT3G59210 28.877 374 220 13 7 351 3 359 4.17e-19 88.6
MS.gene68081.t1 AT3G59210 28.877 374 220 13 7 351 3 359 4.17e-19 88.6
MS.gene68081.t1 AT3G59210 28.877 374 220 13 7 351 3 359 4.17e-19 88.6
MS.gene68081.t1 AT3G59210 28.877 374 220 13 7 351 3 359 4.17e-19 88.6
MS.gene68081.t1 AT3G59210 28.877 374 220 13 7 351 3 359 4.17e-19 88.6
MS.gene68081.t1 AT5G56420 28.693 352 212 12 10 350 5 328 7.88e-19 87.4
MS.gene68081.t1 AT5G56420 28.693 352 212 12 10 350 5 328 7.88e-19 87.4
MS.gene68081.t1 AT5G56420 28.693 352 212 12 10 350 5 328 7.88e-19 87.4
MS.gene68081.t1 AT5G44950 27.005 374 213 15 10 351 3 348 4.22e-18 85.5
MS.gene68081.t1 AT2G04230 27.473 364 211 12 9 350 11 343 4.25e-18 85.5
MS.gene68081.t1 AT2G42730 29.111 371 207 16 10 348 4 350 5.11e-18 85.1
MS.gene68081.t1 AT3G59250 29.178 353 199 11 10 351 6 318 6.34e-18 84.7
MS.gene68081.t1 AT5G56400 27.072 362 224 12 1 350 23 356 7.43e-18 84.7
MS.gene68081.t1 AT5G56380 26.575 365 222 10 11 350 2 345 1.17e-17 84.0
MS.gene68081.t1 AT5G56380 26.575 365 222 10 11 350 2 345 1.17e-17 84.0
MS.gene68081.t1 AT1G78760 28.455 369 210 15 9 351 14 354 2.42e-17 83.2
MS.gene68081.t1 AT5G53635 28.333 360 214 15 13 350 2 339 2.50e-17 83.2
MS.gene68081.t1 AT3G58860 26.870 361 225 10 8 350 4 343 2.91e-17 83.2
MS.gene68081.t1 AT5G56440 28.125 352 212 11 11 351 2 323 3.30e-17 82.8
MS.gene68081.t1 AT5G38590 30.952 294 179 12 11 298 2 277 6.62e-17 80.5
MS.gene68081.t1 AT1G51370 29.388 245 148 7 3 244 11 233 7.03e-17 81.3
MS.gene68081.t1 AT3G03040 26.005 373 228 11 11 351 2 358 9.00e-17 81.6
MS.gene68081.t1 AT5G38590 29.480 346 210 14 11 350 2 319 1.47e-16 80.9
MS.gene68081.t1 AT1G51370 29.388 245 148 7 3 244 11 233 1.68e-16 80.5
MS.gene68081.t1 AT1G51370 29.388 245 148 7 3 244 11 233 2.14e-16 80.5
MS.gene68081.t1 AT1G06630 29.805 359 218 14 10 351 11 352 3.40e-16 79.3
MS.gene68081.t1 AT1G06630 29.805 359 218 14 10 351 11 352 3.40e-16 79.3
MS.gene68081.t1 AT1G06630 29.805 359 218 14 10 351 11 352 5.74e-16 79.0
MS.gene68081.t1 AT1G06630 29.805 359 218 14 10 351 11 352 5.74e-16 79.0
MS.gene68081.t1 AT1G06630 29.805 359 218 14 10 351 11 352 5.74e-16 79.0
MS.gene68081.t1 AT1G06630 29.805 359 218 14 10 351 11 352 5.74e-16 79.0
MS.gene68081.t1 AT5G53840 27.671 365 218 14 4 351 11 346 6.77e-16 79.0
MS.gene68081.t1 AT3G03030 25.000 376 233 11 11 351 2 363 7.66e-16 79.0
MS.gene68081.t1 AT1G06630 29.805 359 218 14 10 351 20 361 8.84e-16 78.6
MS.gene68081.t1 AT3G50710 28.571 350 216 12 11 350 2 327 9.48e-16 78.2
MS.gene68081.t1 AT1G06630 30.000 360 216 15 10 351 11 352 1.21e-15 78.2
MS.gene68081.t1 AT4G22280 30.199 351 216 11 10 351 1 331 1.58e-15 77.0
MS.gene68081.t1 AT3G49030 27.841 352 215 14 10 350 20 343 1.64e-15 77.8
MS.gene68081.t1 AT4G13960 27.273 374 215 13 11 351 2 351 1.92e-15 77.4
MS.gene68081.t1 AT4G13960 27.273 374 215 13 11 351 2 351 1.92e-15 77.4
MS.gene68081.t1 AT4G22280 30.286 350 215 11 11 351 2 331 3.07e-15 76.6
MS.gene68081.t1 AT1G16930 25.737 373 231 12 2 351 6 355 3.51e-15 76.6
MS.gene68081.t1 AT1G16930 25.737 373 231 12 2 351 6 355 3.51e-15 76.6
MS.gene68081.t1 AT1G16930 25.737 373 231 12 2 351 6 355 3.51e-15 76.6
MS.gene68081.t1 AT2G29930 29.121 364 210 16 10 351 11 348 3.61e-15 76.6
MS.gene68081.t1 AT2G29930 29.121 364 210 16 10 351 11 348 3.61e-15 76.6
MS.gene68081.t1 AT3G44060 27.920 351 219 16 16 350 4 336 5.79e-15 75.9
MS.gene68081.t1 AT3G58920 25.926 378 230 12 11 351 2 366 5.98e-15 76.3
MS.gene68081.t1 AT5G22700 28.219 365 215 13 11 350 6 348 8.56e-15 75.5
MS.gene68081.t1 AT5G22700 28.219 365 215 13 11 350 6 348 8.56e-15 75.5
MS.gene68081.t1 AT5G22700 28.219 365 215 13 11 350 6 348 8.56e-15 75.5
MS.gene68081.t1 AT5G22700 28.219 365 215 13 11 350 6 348 8.56e-15 75.5
MS.gene68081.t1 AT5G62970 28.125 384 201 20 11 351 2 353 1.09e-14 75.1
MS.gene68081.t1 AT4G26350 26.796 362 212 14 11 350 2 332 1.40e-14 74.7
MS.gene68081.t1 AT1G66310 27.371 369 220 13 5 350 13 356 1.71e-14 74.7
MS.gene68081.t1 AT5G22700 28.219 365 215 13 11 350 43 385 1.91e-14 74.7
MS.gene68081.t1 AT4G00160 28.249 354 212 10 10 350 15 339 2.10e-14 74.3
MS.gene68081.t1 AT3G52680 29.640 361 198 14 9 350 19 342 2.43e-14 73.9
MS.gene68081.t1 AT3G58980 27.100 369 224 14 11 351 2 353 3.64e-14 73.9
MS.gene68081.t1 AT3G52680 29.640 361 198 14 9 350 19 342 3.84e-14 73.6
MS.gene68081.t1 AT5G18780 26.243 362 226 14 9 351 9 348 4.00e-14 73.6
MS.gene68081.t1 AT5G18780 26.243 362 226 14 9 351 9 348 4.00e-14 73.6
MS.gene68081.t1 AT4G15060 26.486 370 216 17 8 351 23 362 4.19e-14 73.6
MS.gene68081.t1 AT3G42770 29.316 307 176 12 16 299 4 292 7.10e-14 73.2
MS.gene68081.t1 AT5G18770 26.648 364 228 12 4 346 17 362 7.79e-14 72.4
MS.gene68081.t1 AT5G44490 27.467 375 218 15 6 350 12 362 8.11e-14 72.8
MS.gene68081.t1 AT5G44490 27.467 375 218 15 6 350 12 362 8.88e-14 72.8
MS.gene68081.t1 AT5G18780 26.039 361 226 14 9 350 9 347 1.09e-13 72.0
MS.gene68081.t1 AT5G18780 26.039 361 226 14 9 350 9 347 1.09e-13 72.0
MS.gene68081.t1 AT5G41630 25.515 388 225 13 9 351 10 378 1.16e-13 72.0
MS.gene68081.t1 AT3G49150 25.208 361 239 11 10 351 15 363 1.30e-13 72.0
MS.gene68081.t1 AT3G26930 28.492 358 219 14 2 350 12 341 1.33e-13 72.0
MS.gene68081.t1 AT3G59240 26.722 363 229 13 10 351 7 353 1.88e-13 71.6
MS.gene68081.t1 AT3G03030 36.364 143 80 3 11 143 2 143 2.00e-13 70.9
MS.gene68081.t1 AT5G18770 26.741 359 224 12 9 346 22 362 2.15e-13 71.2
MS.gene68081.t1 AT3G58900 26.455 378 221 12 11 351 2 359 3.01e-13 70.9
MS.gene68081.t1 AT3G58880 25.806 372 223 11 11 351 3 352 4.35e-13 70.5
MS.gene68081.t1 AT3G58930 24.675 385 229 11 11 351 2 369 6.99e-13 69.7
MS.gene68081.t1 AT3G58930 24.675 385 229 11 11 351 2 369 6.99e-13 69.7
MS.gene68081.t1 AT3G58930 24.675 385 229 11 11 351 2 369 6.99e-13 69.7
MS.gene68081.t1 AT5G15620 26.184 359 229 11 11 351 2 342 7.74e-13 69.7
MS.gene68081.t1 AT3G26922 27.740 292 190 10 9 295 12 287 8.28e-13 68.6
MS.gene68081.t1 AT3G26922 27.740 292 190 10 9 295 12 287 8.28e-13 68.6
MS.gene68081.t1 AT4G15060 27.215 316 179 15 9 298 170 460 9.58e-13 69.7
MS.gene68081.t1 AT5G22730 26.301 365 229 14 10 350 27 375 9.76e-13 68.9
MS.gene68081.t1 AT5G22730 26.301 365 229 14 10 350 27 375 1.08e-12 69.3
MS.gene68081.t1 AT5G22730 26.301 365 229 14 10 350 27 375 1.08e-12 69.3
MS.gene68081.t1 AT3G49030 27.759 299 187 12 10 298 20 299 1.18e-12 68.9
MS.gene68081.t1 AT4G10410 26.807 332 156 12 25 349 1 252 1.31e-12 67.4
MS.gene68081.t1 AT2G29910 25.815 368 215 13 10 339 4 351 1.34e-12 68.6
MS.gene68081.t1 AT2G29910 25.815 368 215 13 10 339 4 351 1.34e-12 68.6
MS.gene68081.t1 AT2G29910 25.815 368 215 13 10 339 4 351 1.34e-12 68.6
MS.gene68081.t1 AT2G29910 25.815 368 215 13 10 339 4 351 1.34e-12 68.6
MS.gene68081.t1 AT2G29910 25.815 368 215 13 10 339 28 375 1.47e-12 68.6
MS.gene68081.t1 AT4G03220 25.882 340 215 12 11 319 24 357 1.96e-12 68.6
MS.gene68081.t1 AT3G59000 25.722 381 221 14 11 351 2 360 2.15e-12 68.6
MS.gene68081.t1 AT3G60040 27.321 377 215 15 10 351 12 364 2.29e-12 68.6
MS.gene68081.t1 AT5G50270 26.062 353 228 13 11 351 2 333 2.37e-12 68.2
MS.gene68081.t1 AT3G60040 27.321 377 215 15 10 351 229 581 2.47e-12 68.6
MS.gene68081.t1 AT3G60040 27.321 377 215 15 10 351 231 583 2.63e-12 68.6
MS.gene68081.t1 AT5G27750 25.000 380 227 12 11 351 5 365 2.73e-12 68.2
MS.gene68081.t1 AT3G60040 27.321 377 215 15 10 351 232 584 2.92e-12 68.6
MS.gene68081.t1 AT3G60040 27.321 377 215 15 10 351 231 583 2.97e-12 68.2
MS.gene68081.t1 AT4G13985 25.995 377 234 15 1 350 9 367 3.21e-12 67.8
MS.gene68081.t1 AT2G29910 26.453 344 204 11 10 322 4 329 3.90e-12 67.0
MS.gene68081.t1 AT2G29910 26.453 344 204 11 10 322 4 329 3.90e-12 67.0
MS.gene68081.t1 AT5G27750 25.066 379 226 12 11 350 5 364 4.65e-12 67.0
MS.gene68081.t1 AT1G32375 25.490 357 219 13 11 350 2 328 4.67e-12 67.0
MS.gene68081.t1 AT1G32375 25.490 357 219 13 11 350 2 328 4.67e-12 67.0
MS.gene68081.t1 AT1G60400 25.843 356 231 12 11 351 14 351 4.93e-12 67.0
MS.gene68081.t1 AT5G22610 27.027 370 212 15 3 351 10 342 5.17e-12 67.0
MS.gene68081.t1 AT1G66290 27.419 372 216 17 6 351 24 367 6.19e-12 67.0
MS.gene68081.t1 AT3G54910 31.140 228 138 8 77 300 29 241 6.32e-12 66.6
MS.gene68081.t1 AT3G54910 31.140 228 138 8 77 300 29 241 6.32e-12 66.6
MS.gene68081.t1 AT3G54910 31.140 228 138 8 77 300 29 241 6.32e-12 66.6
MS.gene68081.t1 AT1G69630 25.798 376 227 16 4 351 11 362 8.02e-12 66.6
MS.gene68081.t1 AT3G51530 27.557 352 213 12 10 350 29 349 8.85e-12 66.2
MS.gene68081.t1 AT1G66300 25.737 373 225 13 5 350 23 370 1.06e-11 66.2
MS.gene68081.t1 AT4G13965 28.451 355 206 18 9 350 8 327 1.12e-11 65.9
MS.gene68081.t1 AT5G56690 26.648 349 224 12 13 350 4 331 1.26e-11 65.9
MS.gene68081.t1 AT5G22660 25.410 366 228 13 10 351 12 356 1.45e-11 65.9
MS.gene68081.t1 AT1G13780 26.203 374 224 15 11 351 10 364 1.65e-11 65.5
MS.gene68081.t1 AT5G38392 33.010 206 113 6 11 200 2 198 1.74e-11 63.5
MS.gene68081.t1 AT5G50270 28.340 247 159 9 11 249 2 238 2.51e-11 64.3
MS.gene68081.t1 AT5G22610 26.963 382 227 16 3 351 10 372 3.02e-11 65.1
MS.gene68081.t1 AT5G56810 28.854 253 145 9 11 247 15 248 3.82e-11 63.9
MS.gene68081.t1 AT5G56810 28.854 253 145 9 11 247 15 248 4.24e-11 64.3
MS.gene68081.t1 AT5G22670 25.806 372 235 12 1 351 1 352 6.02e-11 63.9

Find 59 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACAATTTATCATCTTTA+TGG 0.083639 1.1:+66582538 MS.gene68081:CDS
CAAGGTTGAGGAACTTGAAT+TGG 0.292646 1.1:+66581835 MS.gene68081:CDS
TAGAGTTGAACACAATAAAT+TGG 0.294013 1.1:-66582006 None:intergenic
TCACAATTTATCATCTTTAT+GGG 0.300522 1.1:+66582539 MS.gene68081:CDS
ATGGCAAGATCCCTAAGTTT+TGG 0.321820 1.1:-66582618 None:intergenic
AAAGTCAAGGTTGGGGATCT+TGG 0.348543 1.1:-66581651 None:intergenic
GGTAATTCAAAGTCAAGGTT+GGG 0.367483 1.1:-66581659 None:intergenic
GCTCGTGGTCTTAAAATTGC+GGG 0.380788 1.1:+66581916 MS.gene68081:CDS
AGTTTGTATTCACTCTTAAG+AGG 0.386556 1.1:+66582340 MS.gene68081:CDS
AGCCTAAGGGGCAATAAGAT+TGG 0.402731 1.1:-66581878 None:intergenic
TTTACATGACTGCATGAAAC+AGG 0.406869 1.1:+66582099 MS.gene68081:CDS
AAATATCCGAAAATTGTTGT+TGG 0.407540 1.1:+66582565 MS.gene68081:CDS
GACATAGGGTCTGTAGTCTT+TGG 0.423895 1.1:-66581680 None:intergenic
ATCTTGATCTTCATCAGATT+CGG 0.426913 1.1:-66581519 None:intergenic
AAGAGTAGCTCGATTGAGAT+TGG 0.434112 1.1:-66582290 None:intergenic
GACCACGAGCGACTTAGAAA+TGG 0.441343 1.1:-66581903 None:intergenic
ACCATATGATATGCACTTGT+GGG 0.445487 1.1:+66581793 MS.gene68081:CDS
TACAGAATGCTCCAAAACTT+AGG 0.453885 1.1:+66582607 MS.gene68081:CDS
ACAGAATGCTCCAAAACTTA+GGG 0.466812 1.1:+66582608 MS.gene68081:CDS
AGGAACTTGAATTGGATTGT+TGG 0.484585 1.1:+66581843 MS.gene68081:CDS
ACCCACAAGTGCATATCATA+TGG 0.486209 1.1:-66581794 None:intergenic
ACTTAGGGATCTTGCCATTG+AGG 0.495226 1.1:+66582623 MS.gene68081:CDS
TGGTAATTCAAAGTCAAGGT+TGG 0.495646 1.1:-66581660 None:intergenic
AATTTGCACTGGACAAATGT+TGG 0.499634 1.1:-66582191 None:intergenic
TTGATTGCTTTGAACGACAT+AGG 0.500776 1.1:-66581695 None:intergenic
AATGAATACTCTCTTTAATG+AGG 0.503823 1.1:-66582143 None:intergenic
TGATTGCTTTGAACGACATA+GGG 0.506092 1.1:-66581694 None:intergenic
CAAATGTTGGACTCAACAAA+AGG 0.508165 1.1:-66582178 None:intergenic
ACTTAGAAATGGAAAGCCTA+AGG 0.512993 1.1:-66581892 None:intergenic
TACGAAGAACTTCAAGTGAT+GGG 0.516752 1.1:-66582219 None:intergenic
AACCAATCTTATTGCCCCTT+AGG 0.520921 1.1:+66581876 MS.gene68081:CDS
TTGTAGATAGAACACTTGTT+CGG 0.523361 1.1:-66581610 None:intergenic
GATGGGGCATTAATTTGCAC+TGG 0.524036 1.1:-66582202 None:intergenic
CAAGTGTTCTATCTACAAGA+TGG 0.524434 1.1:+66581615 MS.gene68081:CDS
ATCTCGTTGTCGACATCTTG+AGG 0.524833 1.1:+66582069 MS.gene68081:CDS
TGAACACAATAAATTGGAGC+TGG 0.528466 1.1:-66582000 None:intergenic
AGCATTAGACCTCAAGGTTG+AGG 0.528928 1.1:+66581823 MS.gene68081:CDS
TTCAAAAGCATTAGACCTCA+AGG 0.530430 1.1:+66581817 MS.gene68081:CDS
CCGAAAACTTAAGAAAACTA+AGG 0.530981 1.1:+66581747 MS.gene68081:CDS
TCTTCGCATTTCTAAGCATG+TGG 0.534563 1.1:+66582309 MS.gene68081:CDS
AATATTCATACACACCTCAA+TGG 0.541265 1.1:-66582637 None:intergenic
CGCTCGTGGTCTTAAAATTG+CGG 0.545262 1.1:+66581915 MS.gene68081:CDS
GTAATTCAAAGTCAAGGTTG+GGG 0.549481 1.1:-66581658 None:intergenic
CTTAGAAATGGAAAGCCTAA+GGG 0.556919 1.1:-66581891 None:intergenic
TTCCATTTCTAAGTCGCTCG+TGG 0.557905 1.1:+66581901 MS.gene68081:CDS
CACCATATGATATGCACTTG+TGG 0.561872 1.1:+66581792 MS.gene68081:CDS
CTAAGGCTCTATAGTGACAA+TGG 0.568620 1.1:+66581764 MS.gene68081:CDS
ATGAATACTCTCTTTAATGA+GGG 0.572741 1.1:-66582142 None:intergenic
CAATAAGATTGGTTTCTCGA+TGG 0.573973 1.1:-66581867 None:intergenic
AAGTGTTCTATCTACAAGAT+GGG 0.574630 1.1:+66581616 MS.gene68081:CDS
AGCTGGAGAATCTTTAGTGA+CGG 0.576222 1.1:-66581983 None:intergenic
TATTGTGTTCAACTCTATCG+TGG 0.590909 1.1:+66582012 MS.gene68081:CDS
ATACGAAGAACTTCAAGTGA+TGG 0.594324 1.1:-66582220 None:intergenic
ATTCAAGTTCCTCAACCTTG+AGG 0.595725 1.1:-66581832 None:intergenic
TCTTTGGTAATTCAAAGTCA+AGG 0.608733 1.1:-66581664 None:intergenic
TTAGAAATGGAAAGCCTAAG+GGG 0.656773 1.1:-66581890 None:intergenic
CTCGTGGTCTTAAAATTGCG+GGG 0.659340 1.1:+66581917 MS.gene68081:CDS
ACGAAGAACTTCAAGTGATG+GGG 0.661138 1.1:-66582218 None:intergenic
TATGCAGTTTCTAAGCATGG+AGG 0.674218 1.1:+66582485 MS.gene68081:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTAAACTTATATTTTCT+GGG - chr1.1:66582265-66582284 None:intergenic 15.0%
!! TCACAATTTATCATCTTTAT+GGG + chr1.1:66582539-66582558 MS.gene68081:CDS 20.0%
!! TGCATATGAGTAAATAAATA+TGG - chr1.1:66582452-66582471 None:intergenic 20.0%
!! TTCACAATTTATCATCTTTA+TGG + chr1.1:66582538-66582557 MS.gene68081:CDS 20.0%
!!! GTTTGTAAACTTATATTTTC+TGG - chr1.1:66582266-66582285 None:intergenic 20.0%
! AAATATCCGAAAATTGTTGT+TGG + chr1.1:66582565-66582584 MS.gene68081:CDS 25.0%
! AATGAATACTCTCTTTAATG+AGG - chr1.1:66582146-66582165 None:intergenic 25.0%
! ATGAATACTCTCTTTAATGA+GGG - chr1.1:66582145-66582164 None:intergenic 25.0%
! TAGAGTTGAACACAATAAAT+TGG - chr1.1:66582009-66582028 None:intergenic 25.0%
!!! CCTTAGTTTTCTTAAGTTTT+CGG - chr1.1:66581750-66581769 None:intergenic 25.0%
AAGTGTTCTATCTACAAGAT+GGG + chr1.1:66581616-66581635 MS.gene68081:CDS 30.0%
AGTTTGTATTCACTCTTAAG+AGG + chr1.1:66582340-66582359 MS.gene68081:CDS 30.0%
ATCTTGATCTTCATCAGATT+CGG - chr1.1:66581522-66581541 None:intergenic 30.0%
CCGAAAACTTAAGAAAACTA+AGG + chr1.1:66581747-66581766 MS.gene68081:CDS 30.0%
TTGTAGATAGAACACTTGTT+CGG - chr1.1:66581613-66581632 None:intergenic 30.0%
! CACATTCCAACAACAATTTT+CGG - chr1.1:66582574-66582593 None:intergenic 30.0%
! TCTTTGGTAATTCAAAGTCA+AGG - chr1.1:66581667-66581686 None:intergenic 30.0%
! TTTTATGCAGTTTCTAAGCA+TGG + chr1.1:66582482-66582501 MS.gene68081:intron 30.0%
AATTTGCACTGGACAAATGT+TGG - chr1.1:66582194-66582213 None:intergenic 35.0%
ACAGAATGCTCCAAAACTTA+GGG + chr1.1:66582608-66582627 MS.gene68081:CDS 35.0%
ACCATATGATATGCACTTGT+GGG + chr1.1:66581793-66581812 MS.gene68081:CDS 35.0%
ACTTAGAAATGGAAAGCCTA+AGG - chr1.1:66581895-66581914 None:intergenic 35.0%
AGGAACTTGAATTGGATTGT+TGG + chr1.1:66581843-66581862 MS.gene68081:CDS 35.0%
ATACGAAGAACTTCAAGTGA+TGG - chr1.1:66582223-66582242 None:intergenic 35.0%
CAAATGTTGGACTCAACAAA+AGG - chr1.1:66582181-66582200 None:intergenic 35.0%
CAAGTGTTCTATCTACAAGA+TGG + chr1.1:66581615-66581634 MS.gene68081:CDS 35.0%
CTTAGAAATGGAAAGCCTAA+GGG - chr1.1:66581894-66581913 None:intergenic 35.0%
GGTAATTCAAAGTCAAGGTT+GGG - chr1.1:66581662-66581681 None:intergenic 35.0%
GTAATTCAAAGTCAAGGTTG+GGG - chr1.1:66581661-66581680 None:intergenic 35.0%
TACAGAATGCTCCAAAACTT+AGG + chr1.1:66582607-66582626 MS.gene68081:CDS 35.0%
TACGAAGAACTTCAAGTGAT+GGG - chr1.1:66582222-66582241 None:intergenic 35.0%
TATTGTGTTCAACTCTATCG+TGG + chr1.1:66582012-66582031 MS.gene68081:CDS 35.0%
TGAACACAATAAATTGGAGC+TGG - chr1.1:66582003-66582022 None:intergenic 35.0%
TGGTAATTCAAAGTCAAGGT+TGG - chr1.1:66581663-66581682 None:intergenic 35.0%
TTAGAAATGGAAAGCCTAAG+GGG - chr1.1:66581893-66581912 None:intergenic 35.0%
TTTACATGACTGCATGAAAC+AGG + chr1.1:66582099-66582118 MS.gene68081:CDS 35.0%
! TGATTGCTTTGAACGACATA+GGG - chr1.1:66581697-66581716 None:intergenic 35.0%
! TTGATTGCTTTGAACGACAT+AGG - chr1.1:66581698-66581717 None:intergenic 35.0%
!! CAATAAGATTGGTTTCTCGA+TGG - chr1.1:66581870-66581889 None:intergenic 35.0%
!! TTCAAAAGCATTAGACCTCA+AGG + chr1.1:66581817-66581836 MS.gene68081:CDS 35.0%
AACCAATCTTATTGCCCCTT+AGG + chr1.1:66581876-66581895 MS.gene68081:CDS 40.0%
AAGAGTAGCTCGATTGAGAT+TGG - chr1.1:66582293-66582312 None:intergenic 40.0%
ACCCACAAGTGCATATCATA+TGG - chr1.1:66581797-66581816 None:intergenic 40.0%
ACGAAGAACTTCAAGTGATG+GGG - chr1.1:66582221-66582240 None:intergenic 40.0%
AGCTGGAGAATCTTTAGTGA+CGG - chr1.1:66581986-66582005 None:intergenic 40.0%
CAAGGTTGAGGAACTTGAAT+TGG + chr1.1:66581835-66581854 MS.gene68081:CDS 40.0%
CACCATATGATATGCACTTG+TGG + chr1.1:66581792-66581811 MS.gene68081:CDS 40.0%
CTAAGGCTCTATAGTGACAA+TGG + chr1.1:66581764-66581783 MS.gene68081:CDS 40.0%
TATGCAGTTTCTAAGCATGG+AGG + chr1.1:66582485-66582504 MS.gene68081:intron 40.0%
TCTTCGCATTTCTAAGCATG+TGG + chr1.1:66582309-66582328 MS.gene68081:CDS 40.0%
! ATGGCAAGATCCCTAAGTTT+TGG - chr1.1:66582621-66582640 None:intergenic 40.0%
! ATTCAAGTTCCTCAACCTTG+AGG - chr1.1:66581835-66581854 None:intergenic 40.0%
!! GGTAAGACTCTTTTGTTGTC+AGG - chr1.1:66581592-66581611 None:intergenic 40.0%
!! TTAAGTTTTCGGTGCGTCTT+AGG - chr1.1:66581739-66581758 None:intergenic 40.0%
AAAGTCAAGGTTGGGGATCT+TGG - chr1.1:66581654-66581673 None:intergenic 45.0%
AGCATTAGACCTCAAGGTTG+AGG + chr1.1:66581823-66581842 MS.gene68081:CDS 45.0%
AGCCTAAGGGGCAATAAGAT+TGG - chr1.1:66581881-66581900 None:intergenic 45.0%
ATCTCGTTGTCGACATCTTG+AGG + chr1.1:66582069-66582088 MS.gene68081:CDS 45.0%
GACATAGGGTCTGTAGTCTT+TGG - chr1.1:66581683-66581702 None:intergenic 45.0%
TTCCATTTCTAAGTCGCTCG+TGG + chr1.1:66581901-66581920 MS.gene68081:CDS 45.0%
! CGCTCGTGGTCTTAAAATTG+CGG + chr1.1:66581915-66581934 MS.gene68081:CDS 45.0%
! CTCGTGGTCTTAAAATTGCG+GGG + chr1.1:66581917-66581936 MS.gene68081:CDS 45.0%
! GCTCGTGGTCTTAAAATTGC+GGG + chr1.1:66581916-66581935 MS.gene68081:CDS 45.0%
!! GATGGGGCATTAATTTGCAC+TGG - chr1.1:66582205-66582224 None:intergenic 45.0%
GACCACGAGCGACTTAGAAA+TGG - chr1.1:66581906-66581925 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 66581509 66582644 66581509 ID=MS.gene68081
chr1.1 mRNA 66581509 66582644 66581509 ID=MS.gene68081.t1;Parent=MS.gene68081
chr1.1 exon 66581509 66582408 66581509 ID=MS.gene68081.t1.exon1;Parent=MS.gene68081.t1
chr1.1 CDS 66581509 66582408 66581509 ID=cds.MS.gene68081.t1;Parent=MS.gene68081.t1
chr1.1 exon 66582492 66582644 66582492 ID=MS.gene68081.t1.exon2;Parent=MS.gene68081.t1
chr1.1 CDS 66582492 66582644 66582492 ID=cds.MS.gene68081.t1;Parent=MS.gene68081.t1
Gene Sequence

>MS.gene68081

ATGGCGTGCTCCGAATCTGATGAAGATCAAGATCGATTAAGCAATCTCGAAGACGAATTGATTATTCATATTTTGTCTTTCCTGACAACAAAAGAGTCTTACCGAACAAGTGTTCTATCTACAAGATGGGAGTCGATCTGCACCAAGATCCCCAACCTTGACTTTGAATTACCAAAGACTACAGACCCTATGTCGTTCAAAGCAATCAAATCTGTATATGCAGCTCTCCTAAGACGCACCGAAAACTTAAGAAAACTAAGGCTCTATAGTGACAATGGTTGCACACCATATGATATGCACTTGTGGGTTTCAAAAGCATTAGACCTCAAGGTTGAGGAACTTGAATTGGATTGTTGGTCCATCGAGAAACCAATCTTATTGCCCCTTAGGCTTTCCATTTCTAAGTCGCTCGTGGTCTTAAAATTGCGGGGCAGAACTCAGCTAAGACTTAATTCTTCTTCTGATGTGTGTTTTCCGTCACTAAAGATTCTCCAGCTCCAATTTATTGTGTTCAACTCTATCGTGGATGATCATAGCGAGTATGATCTCGCTAATTTTCTATCTCGTTGTCGACATCTTGAGGAATTTGTTTTACATGACTGCATGAAACAGGCAATCAATATTGTTTCTTTTCCCTCATTAAAGAGAGTATTCATTTGTTTATTTATGCCTTTTGTTGAGTCCAACATTTGTCCAGTGCAAATTAATGCCCCATCACTTGAAGTTCTTCGTATTGTTGATACTTCATTTTCTCCCAGAAAATATAAGTTTACAAACTTGTCCAATCTCAATCGAGCTACTCTTCGCATTTCTAAGCATGTGGATTTTAACAGTTTGTATTCACTCTTAAGAGGACTTTCTAATGTTAAATCATTGACTATCAGTTCTGAAATTATTCATGTAAGTTTCATAATTTTTTTTATTTTTTTAATGATAAGTTCCATATTTATTTACTCATATGCAATACTTTTTTTTTTATGCAGTTTCTAAGCATGGAGGATAATATTGACAATCTACATCTTCTCACTTTTCACAATTTATCATCTTTATGGGTTGAAATATCCGAAAATTGTTGTTGGAATGTGCTTGTTAGCATACTACAGAATGCTCCAAAACTTAGGGATCTTGCCATTGAG

Protein sequence

>MS.gene68081.t1

MACSESDEDQDRLSNLEDELIIHILSFLTTKESYRTSVLSTRWESICTKIPNLDFELPKTTDPMSFKAIKSVYAALLRRTENLRKLRLYSDNGCTPYDMHLWVSKALDLKVEELELDCWSIEKPILLPLRLSISKSLVVLKLRGRTQLRLNSSSDVCFPSLKILQLQFIVFNSIVDDHSEYDLANFLSRCRHLEEFVLHDCMKQAINIVSFPSLKRVFICLFMPFVESNICPVQINAPSLEVLRIVDTSFSPRKYKFTNLSNLNRATLRISKHVDFNSLYSLLRGLSNVKSLTISSEIIHFLSMEDNIDNLHLLTFHNLSSLWVEISENCCWNVLVSILQNAPKLRDLAIE