AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67917

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67917.t1 MTR_1g041245 57.500 240 85 8 19 245 101 336 1.20e-82 254
MS.gene67917.t1 MTR_7g034115 54.430 237 94 4 19 245 101 333 6.50e-80 246
MS.gene67917.t1 MTR_7g032380 50.855 234 79 5 19 245 102 306 1.29e-65 209
MS.gene67917.t1 MTR_7g032370 48.729 236 99 7 19 245 80 302 3.15e-60 195
MS.gene67917.t1 MTR_7g033990 45.122 246 105 7 19 246 101 334 4.31e-54 181
MS.gene67917.t1 MTR_7g033915 42.683 246 93 9 19 246 101 316 6.49e-46 158
MS.gene67917.t1 MTR_7g056433 43.089 246 112 11 19 245 102 338 2.05e-43 152
MS.gene67917.t1 MTR_7g034120 41.224 245 118 9 19 246 28 263 2.84e-43 150
MS.gene67917.t1 MTR_7g098510 38.211 246 130 9 16 246 103 341 4.41e-43 151
MS.gene67917.t1 MTR_7g098570 39.600 250 125 11 19 251 108 348 2.99e-40 146
MS.gene67917.t1 MTR_8g085430 40.928 237 65 7 19 246 109 279 1.99e-39 140
MS.gene67917.t1 MTR_7g115270 38.077 260 120 8 19 246 102 352 2.03e-39 142
MS.gene67917.t1 MTR_3g036250 39.095 243 120 9 16 245 92 319 2.30e-38 138
MS.gene67917.t1 MTR_5g012840 37.712 236 99 6 19 245 73 269 2.71e-37 134
MS.gene67917.t1 MTR_7g098480 37.450 251 133 11 16 251 103 344 3.38e-37 137
MS.gene67917.t1 MTR_3g040700 38.306 248 116 11 16 246 130 357 4.44e-35 131
MS.gene67917.t1 MTR_3g108560 37.759 241 128 10 19 245 106 338 7.32e-35 130
MS.gene67917.t1 MTR_0492s0020 36.134 238 135 10 16 245 171 399 6.65e-34 128
MS.gene67917.t1 MTR_0543s0010 36.134 238 135 10 16 245 171 399 9.60e-34 127
MS.gene67917.t1 MTR_7g088260 35.000 240 133 9 22 246 182 413 1.56e-33 127
MS.gene67917.t1 MTR_5g008950 36.626 243 132 11 15 245 84 316 1.72e-32 123
MS.gene67917.t1 MTR_5g008920 36.441 236 130 6 20 244 105 331 1.50e-31 120
MS.gene67917.t1 MTR_7g034110 34.008 247 111 9 19 256 98 301 3.78e-30 116
MS.gene67917.t1 MTR_3g082890 36.047 258 125 9 22 246 187 437 1.27e-29 117
MS.gene67917.t1 MTR_5g013500 37.603 242 103 12 19 235 85 303 7.76e-29 113
MS.gene67917.t1 MTR_7g007080 34.034 238 129 7 19 240 104 329 2.77e-28 112
MS.gene67917.t1 MTR_3g087260 37.391 230 126 7 29 246 184 407 4.97e-28 112
MS.gene67917.t1 MTR_3g087260 29.947 187 117 6 22 203 89 266 7.79e-14 71.6
MS.gene67917.t1 MTR_3g109982 37.209 215 115 8 43 246 220 425 8.48e-28 113
MS.gene67917.t1 MTR_3g109982 27.411 197 123 7 16 203 99 284 2.16e-11 64.7
MS.gene67917.t1 MTR_5g073420 33.610 241 131 11 11 240 99 321 8.63e-28 110
MS.gene67917.t1 MTR_3g108150 32.530 249 141 8 17 246 97 337 5.12e-27 108
MS.gene67917.t1 MTR_3g107160 30.453 243 138 8 22 245 108 338 9.06e-27 108
MS.gene67917.t1 MTR_3g023630 32.627 236 144 6 15 242 96 324 1.33e-26 107
MS.gene67917.t1 MTR_5g073370 34.450 209 113 7 40 236 125 321 1.35e-26 107
MS.gene67917.t1 MTR_3g107100 31.837 245 134 9 22 245 106 338 2.24e-26 107
MS.gene67917.t1 MTR_5g007410 31.102 254 145 8 18 251 120 363 2.25e-26 107
MS.gene67917.t1 MTR_7g056430 35.484 248 108 9 15 243 95 309 2.32e-26 108
MS.gene67917.t1 MTR_7g056420 35.484 248 108 9 15 243 95 309 2.47e-26 108
MS.gene67917.t1 MTR_3g107120 31.600 250 144 8 18 251 114 352 3.35e-26 106
MS.gene67917.t1 MTR_3g082890 32.082 293 126 9 22 246 107 394 4.54e-25 103
MS.gene67917.t1 MTR_6g022500 33.333 240 138 9 13 240 191 420 7.33e-25 103
MS.gene67917.t1 MTR_7g056020 29.856 278 169 10 20 282 92 358 8.34e-25 104
MS.gene67917.t1 MTR_3g105060 30.677 251 142 8 9 245 94 326 1.24e-24 102
MS.gene67917.t1 MTR_6g045333 32.422 256 128 11 18 245 157 395 1.40e-24 102
MS.gene67917.t1 MTR_5g058100 33.607 244 133 11 13 240 97 327 3.96e-24 100
MS.gene67917.t1 MTR_7g026500 32.143 252 135 10 19 246 108 347 5.15e-24 100
MS.gene67917.t1 MTR_1g108820 31.679 262 138 10 10 245 88 334 7.96e-24 99.8
MS.gene67917.t1 MTR_4g080610 31.250 240 117 9 22 245 100 307 1.03e-23 99.4
MS.gene67917.t1 MTR_7g075820 30.116 259 138 7 28 256 112 357 1.52e-23 99.4
MS.gene67917.t1 MTR_5g083890 31.687 243 128 9 39 256 136 365 1.99e-23 99.8
MS.gene67917.t1 MTR_3g108560 36.683 199 105 9 19 203 106 297 3.28e-23 97.1
MS.gene67917.t1 MTR_2g007400 28.763 299 154 12 17 284 109 379 4.28e-23 98.2
MS.gene67917.t1 MTR_7g056277 29.961 257 146 10 25 262 362 603 6.61e-23 98.6
MS.gene67917.t1 MTR_1g107385 32.766 235 125 9 42 256 165 386 8.88e-23 97.4
MS.gene67917.t1 MTR_2g007450 28.253 269 133 10 22 244 119 373 2.25e-22 96.3
MS.gene67917.t1 MTR_5g058000 33.898 236 129 9 16 240 99 318 3.24e-22 95.1
MS.gene67917.t1 MTR_7g056287 29.730 259 144 9 25 262 106 347 3.33e-22 95.1
MS.gene67917.t1 MTR_1g108800 32.083 240 132 7 22 246 69 292 6.27e-22 94.0
MS.gene67917.t1 MTR_1g066830 30.233 258 144 11 9 245 93 335 1.52e-21 93.6
MS.gene67917.t1 MTR_5g039470 31.405 242 140 9 22 245 80 313 1.98e-21 92.4
MS.gene67917.t1 MTR_3g071850 31.048 248 134 11 19 242 121 355 1.52e-20 92.0
MS.gene67917.t1 MTR_7g075800 29.904 311 141 16 19 268 101 395 1.92e-20 91.7
MS.gene67917.t1 MTR_1g053025 27.241 290 151 13 22 269 105 376 2.44e-20 90.1
MS.gene67917.t1 MTR_2g007360 30.282 284 138 15 25 275 83 339 4.36e-20 89.4
MS.gene67917.t1 MTR_7g060470 29.918 244 126 10 23 235 105 334 6.36e-20 89.0
MS.gene67917.t1 MTR_6g040270 30.603 232 139 7 20 241 104 323 8.16e-20 88.6
MS.gene67917.t1 MTR_7g007340 33.028 218 116 9 42 244 107 309 8.90e-20 88.2
MS.gene67917.t1 MTR_7g081290 49.474 95 42 4 155 245 118 210 1.17e-19 86.3
MS.gene67917.t1 MTR_1g085120 27.138 269 168 10 19 271 188 444 1.69e-19 88.2
MS.gene67917.t1 MTR_1g085120 27.273 275 172 11 13 271 257 519 2.00e-19 88.2
MS.gene67917.t1 MTR_2g005990 30.980 255 131 11 19 242 105 345 2.01e-19 87.4
MS.gene67917.t1 MTR_0009s0080 31.452 248 135 11 20 245 115 349 3.68e-19 87.0
MS.gene67917.t1 MTR_2g007500 31.128 257 130 12 19 242 92 334 4.65e-19 85.9
MS.gene67917.t1 MTR_5g054920 35.503 169 91 6 95 251 3 165 1.15e-18 82.0
MS.gene67917.t1 MTR_2g008310 32.558 215 109 9 43 238 119 316 1.40e-18 85.1
MS.gene67917.t1 MTR_2g020180 47.191 89 36 2 159 246 90 168 2.94e-18 81.6
MS.gene67917.t1 MTR_2g036470 31.855 248 129 10 22 245 114 345 4.26e-18 84.0
MS.gene67917.t1 MTR_7g055943 31.799 239 135 10 11 234 128 353 8.11e-18 83.2
MS.gene67917.t1 MTR_2g008320 31.628 215 112 9 43 238 173 371 2.46e-17 82.0
MS.gene67917.t1 MTR_3g026920 28.777 278 117 12 11 238 111 357 2.75e-17 81.6
MS.gene67917.t1 MTR_6g029350 34.615 156 84 7 98 243 2 149 2.89e-17 79.3
MS.gene67917.t1 MTR_3g099830 30.317 221 121 9 42 242 117 324 3.79e-17 80.9
MS.gene67917.t1 MTR_1089s0010 28.936 235 137 9 19 240 103 320 4.40e-17 80.9
MS.gene67917.t1 MTR_3g110010 30.962 239 131 11 43 260 220 445 4.96e-17 81.3
MS.gene67917.t1 MTR_3g110010 27.411 197 123 7 16 203 99 284 2.42e-11 64.3
MS.gene67917.t1 MTR_5g045170 29.317 249 146 9 22 251 109 346 1.80e-16 79.0
MS.gene67917.t1 MTR_7g083740 27.698 278 143 13 19 263 94 346 2.51e-16 78.6
MS.gene67917.t1 MTR_6g022360 28.175 252 152 9 11 245 118 357 3.84e-16 78.2
MS.gene67917.t1 MTR_5g061680 30.837 227 124 8 9 231 97 294 4.53e-16 77.4
MS.gene67917.t1 MTR_5g031970 28.750 240 139 10 20 251 96 311 8.20e-16 77.0
MS.gene67917.t1 MTR_6g011460 29.098 244 136 9 11 236 134 358 8.32e-16 77.4
MS.gene67917.t1 MTR_5g039450 28.627 255 133 10 22 256 101 326 8.41e-16 77.0
MS.gene67917.t1 MTR_1g108820 30.631 222 119 8 10 205 88 300 8.62e-16 76.6
MS.gene67917.t1 MTR_4g039440 28.226 248 144 11 13 238 116 351 8.88e-16 77.0
MS.gene67917.t1 MTR_3g467400 30.620 258 115 13 17 245 94 316 1.20e-15 76.6
MS.gene67917.t1 MTR_5g073340 28.326 233 134 8 22 232 79 300 2.98e-15 74.7
MS.gene67917.t1 MTR_7g056280 30.058 173 97 6 98 251 367 534 4.81e-15 75.5
MS.gene67917.t1 MTR_6g022520 26.939 245 150 8 19 245 29 262 1.47e-14 72.8
MS.gene67917.t1 MTR_6g044572 27.049 244 135 7 4 235 110 322 4.86e-14 72.0
MS.gene67917.t1 MTR_3g095630 36.667 120 66 6 125 240 17 130 5.24e-14 69.3
MS.gene67917.t1 MTR_7g021950 29.864 221 129 6 43 246 164 375 9.23e-14 71.6
MS.gene67917.t1 MTR_7g021990 29.864 221 129 6 43 246 164 375 9.50e-14 71.2
MS.gene67917.t1 MTR_6g044560 27.049 244 135 7 4 235 286 498 2.78e-13 70.1
MS.gene67917.t1 MTR_5g063950 27.668 253 148 10 19 251 80 317 4.90e-13 68.9
MS.gene67917.t1 MTR_3g115430 44.928 69 36 1 178 246 12 78 7.29e-13 64.7
MS.gene67917.t1 MTR_2g007090 31.383 188 87 10 69 243 87 245 1.23e-12 67.0
MS.gene67917.t1 MTR_7g007370 32.500 200 100 8 42 223 93 275 1.30e-12 67.4
MS.gene67917.t1 MTR_7g022105 28.704 216 138 4 43 246 165 376 1.28e-11 64.7
MS.gene67917.t1 MTR_5g076150 29.437 231 115 10 32 228 11 227 2.85e-11 62.4
MS.gene67917.t1 MTR_1377s0010 33.962 106 61 4 137 240 6 104 4.04e-11 60.1
MS.gene67917.t1 MTR_8g016130 36.667 120 65 5 15 130 50 162 4.70e-11 60.5
MS.gene67917.t1 MTR_3g107940 41.667 84 47 2 163 245 89 171 5.33e-11 62.8
MS.gene67917.t1 MTR_3g113785 40.625 96 31 3 163 246 4 85 5.99e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 54 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGAAGATTAGGACAATTT+TGG 0.166350 7.2:+63596556 None:intergenic
GAATATTTGCTCTCACTAAT+TGG 0.238032 7.2:+63596862 None:intergenic
TTTCCAGAAGAAGAGTTTAA+TGG 0.250462 7.2:-63596891 MS.gene67917:CDS
AGCTGAGTTGAAAGACATTC+TGG 0.253372 7.2:+63596363 None:intergenic
ATTGCTCAAAACACTTCATT+TGG 0.307784 7.2:-63597027 MS.gene67917:CDS
GATTGGTGTTTGAAGCAAAA+TGG 0.320414 7.2:-63595738 MS.gene67917:intron
GCATGCAACAAGTTTATTCC+TGG 0.353922 7.2:-63596919 MS.gene67917:CDS
AAGCCATTAAACTCTTCTTC+TGG 0.360086 7.2:+63596888 None:intergenic
AATTTGACTCACATGGAGAT+TGG 0.383846 7.2:-63596633 MS.gene67917:CDS
TCAATCTCTTTCCGCCCATC+TGG 0.388913 7.2:-63597002 MS.gene67917:CDS
GAAAGACATTCTGGAACAAT+TGG 0.392140 7.2:+63596372 None:intergenic
TCTGGTTGAAGTGGTAGATC+TGG 0.392987 7.2:-63597714 MS.gene67917:CDS
GGGCTAACCATGTAGTTCTA+AGG 0.396899 7.2:-63595951 MS.gene67917:CDS
AAAGTTTCTATCCACAAAAC+TGG 0.410682 7.2:-63596808 MS.gene67917:intron
CATTACGAACCCAAGCCATT+GGG 0.412584 7.2:+63596832 None:intergenic
TCATTCAACCCCAATGGCTT+GGG 0.414408 7.2:-63596841 MS.gene67917:CDS
TTCATTCAACCCCAATGGCT+TGG 0.416293 7.2:-63596842 MS.gene67917:CDS
ATGGTAAGATTCTGAAGATT+AGG 0.424552 7.2:+63596546 None:intergenic
CTTTCAAAATTTGACTCACA+TGG 0.440042 7.2:-63596640 MS.gene67917:CDS
GCATGCAAATCCTCTAAAAC+AGG 0.450161 7.2:+63596936 None:intergenic
GCATTACGAACCCAAGCCAT+TGG 0.453397 7.2:+63596831 None:intergenic
CATGCAACAAGTTTATTCCT+GGG 0.458540 7.2:-63596918 MS.gene67917:CDS
AGCAATGGAAAGTTGACATC+GGG 0.473230 7.2:+63597044 None:intergenic
GGGAATGAACAATATGCATC+TGG 0.476978 7.2:-63597732 None:intergenic
CAGAATCTCAACCTTGACAT+AGG 0.480133 7.2:-63597149 MS.gene67917:CDS
CATAGAGCCTTAGAACTACA+TGG 0.493364 7.2:+63595944 None:intergenic
AATTGAGATATGATTGGCTT+GGG 0.493411 7.2:-63596605 MS.gene67917:CDS
ATTGGCTTGGGAAGTGGAAG+TGG 0.495880 7.2:-63596593 MS.gene67917:CDS
GATTTGAATTGAGATATGAT+TGG 0.496357 7.2:-63596611 MS.gene67917:CDS
GATATGATTGGCTTGGGAAG+TGG 0.498477 7.2:-63596599 MS.gene67917:CDS
CTTCTTCTGGAAAACGACCC+AGG 0.523999 7.2:+63596901 None:intergenic
ATATAATTTATAACCGCTCA+AGG 0.529379 7.2:-63595972 MS.gene67917:CDS
GACAAATAAGACCTCGCGAA+TGG 0.530888 7.2:+63596527 None:intergenic
CTGGTTGAAGTGGTAGATCT+GGG 0.533194 7.2:-63597713 MS.gene67917:CDS
ATGAAATTGACAATGACAGT+TGG 0.536085 7.2:-63596404 MS.gene67917:CDS
GAATTGAGATATGATTGGCT+TGG 0.544799 7.2:-63596606 MS.gene67917:CDS
AGACATTCTGGAACAATTGG+TGG 0.549708 7.2:+63596375 None:intergenic
AAATATTCATTCAACCCCAA+TGG 0.568300 7.2:-63596847 MS.gene67917:CDS
CATCTGGTGCTCATAGCCAT+AGG 0.569633 7.2:-63596986 MS.gene67917:CDS
CTATGGCTATGAGCACCAGA+TGG 0.587982 7.2:+63596987 None:intergenic
CAATATGCATCTGGTTGAAG+TGG 0.598855 7.2:-63597723 None:intergenic
GGCTATGAGCACCAGATGGG+CGG 0.609458 7.2:+63596991 None:intergenic
GAGCAATGGAAAGTTGACAT+CGG 0.611543 7.2:+63597043 None:intergenic
GAGGCGCTCATATGACTACC+AGG 0.612385 7.2:-63596670 MS.gene67917:CDS
AATTGACAATGACAGTTGGA+TGG 0.612430 7.2:-63596400 MS.gene67917:CDS
TATAATTTATAACCGCTCAA+GGG 0.619161 7.2:-63595971 MS.gene67917:CDS
TATGGCTATGAGCACCAGAT+GGG 0.624345 7.2:+63596988 None:intergenic
GACATTCTGGAACAATTGGT+GGG 0.625033 7.2:+63596376 None:intergenic
ACTTAAAGAAACCTATGTCA+AGG 0.626078 7.2:+63597138 None:intergenic
ATTACGAACCCAAGCCATTG+GGG 0.644228 7.2:+63596833 None:intergenic
CTACATGGTTAGCCCTTGAG+CGG 0.646100 7.2:+63595959 None:intergenic
TCAGAATCTTACCATTCGCG+AGG 0.646289 7.2:-63596538 MS.gene67917:intron
ATTAATGCTGCTATGCAACG+TGG 0.669305 7.2:-63597176 MS.gene67917:CDS
ACATCAACTTCAGAACAGTG+AGG 0.782354 7.2:+63597087 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTATTTGAAAACAGA+AGG + chr7.2:63597349-63597368 None:intergenic 15.0%
!! TATCATGTTAAAAACAAATT+TGG - chr7.2:63596682-63596701 MS.gene67917:intron 15.0%
!! AATATAATTTCATTAGCATC+TGG + chr7.2:63597245-63597264 None:intergenic 20.0%
!! AATTTACATGTCAACAAATT+TGG - chr7.2:63595827-63595846 MS.gene67917:intron 20.0%
!! AGAAAAAGTAATCAAAATGA+TGG + chr7.2:63596985-63597004 None:intergenic 20.0%
!! ATGTTAAAAACAAATTTGGT+TGG - chr7.2:63596686-63596705 MS.gene67917:intron 20.0%
!! TAACAATGGAAATTTCAAAA+AGG + chr7.2:63597391-63597410 None:intergenic 20.0%
!! TAGGAAATCCAATAAATTAT+GGG - chr7.2:63595794-63595813 MS.gene67917:intron 20.0%
!!! AATATTGTTTGTTGTTTGAT+AGG - chr7.2:63597008-63597027 MS.gene67917:CDS 20.0%
!!! AATTTTTTGGTACAAAAGTT+TGG - chr7.2:63596723-63596742 MS.gene67917:intron 20.0%
!!! TTTTAACATGATAAACCATT+GGG + chr7.2:63596675-63596694 None:intergenic 20.0%
!!! TTTTTAACATGATAAACCAT+TGG + chr7.2:63596676-63596695 None:intergenic 20.0%
! AATGGAAATTTCAAAAAGGT+GGG + chr7.2:63597387-63597406 None:intergenic 25.0%
! ATAAATCTATTGACATCATG+TGG + chr7.2:63596256-63596275 None:intergenic 25.0%
! ATATAATTTATAACCGCTCA+AGG - chr7.2:63597478-63597497 MS.gene67917:intron 25.0%
! CCAATAAATTATGGGTAATT+AGG - chr7.2:63595802-63595821 MS.gene67917:intron 25.0%
! CCTAATTACCCATAATTTAT+TGG + chr7.2:63595805-63595824 None:intergenic 25.0%
! GATTTGAATTGAGATATGAT+TGG - chr7.2:63596839-63596858 MS.gene67917:CDS 25.0%
! GTAGGAAATCCAATAAATTA+TGG - chr7.2:63595793-63595812 MS.gene67917:intron 25.0%
! GTCAACAAATTTGGATTTAT+TGG - chr7.2:63595836-63595855 MS.gene67917:intron 25.0%
! TATAATTTATAACCGCTCAA+GGG - chr7.2:63597479-63597498 MS.gene67917:intron 25.0%
! TATAGTGAACATGTTTATTG+TGG - chr7.2:63597598-63597617 MS.gene67917:intron 25.0%
! TATTGATGTTTATCAATGTC+TGG - chr7.2:63597435-63597454 MS.gene67917:intron 25.0%
! TTGCTTAACTAATTTAACCA+TGG - chr7.2:63597655-63597674 MS.gene67917:intron 25.0%
!! AGCTTTATATTTAAATCCAC+TGG + chr7.2:63597222-63597241 None:intergenic 25.0%
!! ATTGTCTTTTGACAAAATCA+AGG - chr7.2:63597545-63597564 MS.gene67917:intron 25.0%
!! GAAAAGATAATTTGCAACTA+CGG - chr7.2:63597628-63597647 MS.gene67917:intron 25.0%
AAAGTTTCTATCCACAAAAC+TGG - chr7.2:63596642-63596661 MS.gene67917:CDS 30.0%
AAATATTCATTCAACCCCAA+TGG - chr7.2:63596603-63596622 MS.gene67917:CDS 30.0%
AAATTATATTTGTGCCCAAG+GGG - chr7.2:63597255-63597274 MS.gene67917:intron 30.0%
AACTCTCATTTGAATGAGAA+AGG - chr7.2:63597292-63597311 MS.gene67917:intron 30.0%
ACTTAAAGAAACCTATGTCA+AGG + chr7.2:63596315-63596334 None:intergenic 30.0%
ATGAAATTGACAATGACAGT+TGG - chr7.2:63597046-63597065 MS.gene67917:CDS 30.0%
ATTGCTCAAAACACTTCATT+TGG - chr7.2:63596423-63596442 MS.gene67917:CDS 30.0%
CAAGCAATTATCACTAACAA+TGG + chr7.2:63597405-63597424 None:intergenic 30.0%
CAATGGAAATTTCAAAAAGG+TGG + chr7.2:63597388-63597407 None:intergenic 30.0%
CATTTGAATGAGAAAGGTTA+GGG - chr7.2:63597298-63597317 MS.gene67917:intron 30.0%
CTTTCAAAATTTGACTCACA+TGG - chr7.2:63596810-63596829 MS.gene67917:CDS 30.0%
GAAATTATATTTGTGCCCAA+GGG - chr7.2:63597254-63597273 MS.gene67917:intron 30.0%
GAATATTTGCTCTCACTAAT+TGG + chr7.2:63596591-63596610 None:intergenic 30.0%
TCATTTGAATGAGAAAGGTT+AGG - chr7.2:63597297-63597316 MS.gene67917:intron 30.0%
TGAAATTATATTTGTGCCCA+AGG - chr7.2:63597253-63597272 MS.gene67917:intron 30.0%
TTTCCAGAAGAAGAGTTTAA+TGG - chr7.2:63596559-63596578 MS.gene67917:CDS 30.0%
! ATGGTAAGATTCTGAAGATT+AGG + chr7.2:63596907-63596926 None:intergenic 30.0%
! CATGTGAGTCAAATTTTGAA+AGG + chr7.2:63596812-63596831 None:intergenic 30.0%
! TCTGAAGATTAGGACAATTT+TGG + chr7.2:63596897-63596916 None:intergenic 30.0%
! TGATAATGAGAATCAAAGCT+AGG + chr7.2:63595930-63595949 None:intergenic 30.0%
!! AAATGAAGTGTTTTGAGCAA+TGG + chr7.2:63596424-63596443 None:intergenic 30.0%
!! AATTGAGATATGATTGGCTT+GGG - chr7.2:63596845-63596864 MS.gene67917:CDS 30.0%
!! ATAGCCATAGGTGTTTTAAA+AGG - chr7.2:63596476-63596495 MS.gene67917:intron 30.0%
!! TGAGTCAAATTTTGAAAGGT+GGG + chr7.2:63596808-63596827 None:intergenic 30.0%
AAAACTGGTATGAATCCCAA+TGG - chr7.2:63596657-63596676 MS.gene67917:CDS 35.0%
AAGCCATTAAACTCTTCTTC+TGG + chr7.2:63596565-63596584 None:intergenic 35.0%
AATTGACAATGACAGTTGGA+TGG - chr7.2:63597050-63597069 MS.gene67917:CDS 35.0%
AATTTGACTCACATGGAGAT+TGG - chr7.2:63596817-63596836 MS.gene67917:CDS 35.0%
ACACATGAACGAAACTTAAG+AGG + chr7.2:63597687-63597706 None:intergenic 35.0%
ATGCAACTAAAAACACAGGT+AGG + chr7.2:63596340-63596359 None:intergenic 35.0%
CATGCAACAAGTTTATTCCT+GGG - chr7.2:63596532-63596551 MS.gene67917:intron 35.0%
CTCATTATCATCACCTAAGA+TGG - chr7.2:63595940-63595959 MS.gene67917:CDS 35.0%
GAAATTTCAAAAAGGTGGGT+GGG + chr7.2:63597383-63597402 None:intergenic 35.0%
GAAGAAAGCTGTTAATGTGT+AGG - chr7.2:63595775-63595794 MS.gene67917:intron 35.0%
GTAAAATACACATGCACCAA+CGG + chr7.2:63597575-63597594 None:intergenic 35.0%
GTCAATGCAACTAAAAACAC+AGG + chr7.2:63596344-63596363 None:intergenic 35.0%
! GAATTGAGATATGATTGGCT+TGG - chr7.2:63596844-63596863 MS.gene67917:CDS 35.0%
! GATTGGTGTTTGAAGCAAAA+TGG - chr7.2:63597712-63597731 MS.gene67917:CDS 35.0%
! GTCGTAGAAGCTCTAATTTA+TGG - chr7.2:63595874-63595893 MS.gene67917:intron 35.0%
! TGCTCGCTTATAGCTTTTAA+AGG - chr7.2:63597117-63597136 MS.gene67917:CDS 35.0%
! TGGTGAGACACAAATTTTCA+TGG + chr7.2:63597202-63597221 None:intergenic 35.0%
!! GAAAGACATTCTGGAACAAT+TGG + chr7.2:63597081-63597100 None:intergenic 35.0%
!! GTGAGTCAAATTTTGAAAGG+TGG + chr7.2:63596809-63596828 None:intergenic 35.0%
!! TCGTTCATGTGTTGATTGAT+TGG - chr7.2:63597695-63597714 MS.gene67917:CDS 35.0%
!!! GAAGCCTTTTAAAACACCTA+TGG + chr7.2:63596483-63596502 None:intergenic 35.0%
!!! GTTTTAAAAGGCTTCTCTCT+GGG - chr7.2:63596488-63596507 MS.gene67917:intron 35.0%
!!! TGTTTTAAAAGGCTTCTCTC+TGG - chr7.2:63596487-63596506 MS.gene67917:intron 35.0%
AATTAGAGCTTCTACGACAG+AGG + chr7.2:63595872-63595891 None:intergenic 40.0%
ACAAAATCAAGGTTTGCCGT+TGG - chr7.2:63597556-63597575 MS.gene67917:intron 40.0%
ACATCAACTTCAGAACAGTG+AGG + chr7.2:63596366-63596385 None:intergenic 40.0%
ACATGTTTATTGTGGACTCG+TGG - chr7.2:63597606-63597625 MS.gene67917:intron 40.0%
AGCAATGGAAAGTTGACATC+GGG + chr7.2:63596409-63596428 None:intergenic 40.0%
ATTAATGCTGCTATGCAACG+TGG - chr7.2:63596274-63596293 MS.gene67917:intron 40.0%
CAGAATCTCAACCTTGACAT+AGG - chr7.2:63596301-63596320 MS.gene67917:intron 40.0%
CATAGAGCCTTAGAACTACA+TGG + chr7.2:63597509-63597528 None:intergenic 40.0%
CCAAAAGATGGAAACCATTG+TGG - chr7.2:63596077-63596096 MS.gene67917:intron 40.0%
CTTTGAGTGATTCACGTTTG+GGG - chr7.2:63595897-63595916 MS.gene67917:intron 40.0%
GAAAATTTGTGTCTCACCAG+TGG - chr7.2:63597203-63597222 MS.gene67917:intron 40.0%
GAGCAATGGAAAGTTGACAT+CGG + chr7.2:63596410-63596429 None:intergenic 40.0%
GCATGCAACAAGTTTATTCC+TGG - chr7.2:63596531-63596550 MS.gene67917:intron 40.0%
GGAAATTTCAAAAAGGTGGG+TGG + chr7.2:63597384-63597403 None:intergenic 40.0%
! AGCTGAGTTGAAAGACATTC+TGG + chr7.2:63597090-63597109 None:intergenic 40.0%
! CCACAATGGTTTCCATCTTT+TGG + chr7.2:63596080-63596099 None:intergenic 40.0%
! GCTTTGAGTGATTCACGTTT+GGG - chr7.2:63595896-63595915 MS.gene67917:intron 40.0%
! TGCTTTTGCAACACATGTAG+AGG - chr7.2:63596761-63596780 MS.gene67917:intron 40.0%
! TGGGATTCATACCAGTTTTG+TGG + chr7.2:63596656-63596675 None:intergenic 40.0%
!! AATTTTGAAAGGTGGGAACC+TGG + chr7.2:63596801-63596820 None:intergenic 40.0%
!! AGACATTCTGGAACAATTGG+TGG + chr7.2:63597078-63597097 None:intergenic 40.0%
!! ATGGTTTCCATCTTTTGGAG+AGG + chr7.2:63596075-63596094 None:intergenic 40.0%
!! GACATTCTGGAACAATTGGT+GGG + chr7.2:63597077-63597096 None:intergenic 40.0%
!! GCATGCAAATCCTCTAAAAC+AGG + chr7.2:63596517-63596536 None:intergenic 40.0%
AACGATCGGATAGGCAATGT+GGG + chr7.2:63596196-63596215 None:intergenic 45.0%
AACTTAAGAGGCAAGAGCCA+TGG + chr7.2:63597675-63597694 None:intergenic 45.0%
AGAGAGGATGTGGCAGATAA+CGG + chr7.2:63596017-63596036 None:intergenic 45.0%
ATTACGAACCCAAGCCATTG+GGG + chr7.2:63596620-63596639 None:intergenic 45.0%
CAAGCATCCTCTCCAAAAGA+TGG - chr7.2:63596065-63596084 MS.gene67917:intron 45.0%
CATTACGAACCCAAGCCATT+GGG + chr7.2:63596621-63596640 None:intergenic 45.0%
CTGGTTGAAGTGGTAGATCT+GGG - chr7.2:63595737-63595756 MS.gene67917:intron 45.0%
GACAAATAAGACCTCGCGAA+TGG + chr7.2:63596926-63596945 None:intergenic 45.0%
GTTTGGTAGGGAGAAAAGAG+AGG + chr7.2:63596033-63596052 None:intergenic 45.0%
TACATGTAGTAGAGCCCCTT+GGG + chr7.2:63597272-63597291 None:intergenic 45.0%
TAGGGAGAAAAGAGAGGATG+TGG + chr7.2:63596027-63596046 None:intergenic 45.0%
TATGGCTATGAGCACCAGAT+GGG + chr7.2:63596465-63596484 None:intergenic 45.0%
TCAGAATCTTACCATTCGCG+AGG - chr7.2:63596912-63596931 MS.gene67917:CDS 45.0%
TCATTCAACCCCAATGGCTT+GGG - chr7.2:63596609-63596628 MS.gene67917:CDS 45.0%
TCTGGTTGAAGTGGTAGATC+TGG - chr7.2:63595736-63595755 MS.gene67917:intron 45.0%
TTACATGTAGTAGAGCCCCT+TGG + chr7.2:63597273-63597292 None:intergenic 45.0%
TTCATTCAACCCCAATGGCT+TGG - chr7.2:63596608-63596627 MS.gene67917:CDS 45.0%
TTGCGGCAGATTGTTTGGTA+GGG + chr7.2:63596045-63596064 None:intergenic 45.0%
! GGGCTAACCATGTAGTTCTA+AGG - chr7.2:63597499-63597518 MS.gene67917:intron 45.0%
! TTTGGAGAGGATGCTTGTTG+CGG + chr7.2:63596062-63596081 None:intergenic 45.0%
!! ATGTGGCAGATAACGGAATC+TGG + chr7.2:63596010-63596029 None:intergenic 45.0%
!! GATATGATTGGCTTGGGAAG+TGG - chr7.2:63596851-63596870 MS.gene67917:CDS 45.0%
!! GCAGATAACGGAATCTGGAA+GGG + chr7.2:63596005-63596024 None:intergenic 45.0%
!! GCGCTGATTCTGTCTAAAGT+TGG + chr7.2:63595983-63596002 None:intergenic 45.0%
!! GGCTTTGAGTGATTCACGTT+TGG - chr7.2:63595895-63595914 MS.gene67917:intron 45.0%
!!! TTCTTTTATTTTTAATTTTT+TGG - chr7.2:63596710-63596729 MS.gene67917:intron 5.0%
AAAAGTCGGGGCACATCTTC+TGG - chr7.2:63596223-63596242 MS.gene67917:intron 50.0%
ACGATCGGATAGGCAATGTG+GGG + chr7.2:63596195-63596214 None:intergenic 50.0%
ATCGTTCCGCCTCAAAAGTC+GGG - chr7.2:63596210-63596229 MS.gene67917:intron 50.0%
CATCTGGTGCTCATAGCCAT+AGG - chr7.2:63596464-63596483 MS.gene67917:intron 50.0%
CTATGGCTATGAGCACCAGA+TGG + chr7.2:63596466-63596485 None:intergenic 50.0%
GAACGATCGGATAGGCAATG+TGG + chr7.2:63596197-63596216 None:intergenic 50.0%
GAACGCTGAGAAGCCATCTT+AGG + chr7.2:63595956-63595975 None:intergenic 50.0%
GATCGTTCCGCCTCAAAAGT+CGG - chr7.2:63596209-63596228 MS.gene67917:intron 50.0%
GCATTACGAACCCAAGCCAT+TGG + chr7.2:63596622-63596641 None:intergenic 50.0%
GTAGAAACTGCGAGCCACAA+TGG + chr7.2:63596094-63596113 None:intergenic 50.0%
GTTGCGGCAGATTGTTTGGT+AGG + chr7.2:63596046-63596065 None:intergenic 50.0%
TCAATCTCTTTCCGCCCATC+TGG - chr7.2:63596448-63596467 MS.gene67917:intron 50.0%
! AAGATGTGCCCCGACTTTTG+AGG + chr7.2:63596222-63596241 None:intergenic 50.0%
! CTACATGGTTAGCCCTTGAG+CGG + chr7.2:63597494-63597513 None:intergenic 50.0%
! CTTCTTCTGGAAAACGACCC+AGG + chr7.2:63596552-63596571 None:intergenic 50.0%
! GCTTGTTGCGGCAGATTGTT+TGG + chr7.2:63596050-63596069 None:intergenic 50.0%
!! ATTGGCTTGGGAAGTGGAAG+TGG - chr7.2:63596857-63596876 MS.gene67917:CDS 50.0%
!! CTCTGGGTGTCCTGTTTTAG+AGG - chr7.2:63596504-63596523 MS.gene67917:intron 50.0%
!! GGCAGATAACGGAATCTGGA+AGG + chr7.2:63596006-63596025 None:intergenic 50.0%
!!! GACTTTTGAGGCGGAACGAT+CGG + chr7.2:63596210-63596229 None:intergenic 50.0%
GATAGGCAATGTGGGGTCAC+GGG + chr7.2:63596188-63596207 None:intergenic 55.0%
GGATAGGCAATGTGGGGTCA+CGG + chr7.2:63596189-63596208 None:intergenic 55.0%
TCGTTCCGCCTCAAAAGTCG+GGG - chr7.2:63596211-63596230 MS.gene67917:intron 55.0%
TTGAGGCGGAACGATCGGAT+AGG + chr7.2:63596205-63596224 None:intergenic 55.0%
! GAGGCGCTCATATGACTACC+AGG - chr7.2:63596780-63596799 MS.gene67917:intron 55.0%
!! ATGTGCCCCGACTTTTGAGG+CGG + chr7.2:63596219-63596238 None:intergenic 55.0%
GGCTATGAGCACCAGATGGG+CGG + chr7.2:63596462-63596481 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 63595731 63597741 63595731 ID=MS.gene67917
chr7.2 mRNA 63595731 63597741 63595731 ID=MS.gene67917.t1;Parent=MS.gene67917
chr7.2 exon 63597680 63597741 63597680 ID=MS.gene67917.t1.exon1;Parent=MS.gene67917.t1
chr7.2 CDS 63597680 63597741 63597680 ID=cds.MS.gene67917.t1;Parent=MS.gene67917.t1
chr7.2 exon 63596809 63597202 63596809 ID=MS.gene67917.t1.exon2;Parent=MS.gene67917.t1
chr7.2 CDS 63596809 63597202 63596809 ID=cds.MS.gene67917.t1;Parent=MS.gene67917.t1
chr7.2 exon 63596539 63596691 63596539 ID=MS.gene67917.t1.exon3;Parent=MS.gene67917.t1
chr7.2 CDS 63596539 63596691 63596539 ID=cds.MS.gene67917.t1;Parent=MS.gene67917.t1
chr7.2 exon 63596315 63596442 63596315 ID=MS.gene67917.t1.exon4;Parent=MS.gene67917.t1
chr7.2 CDS 63596315 63596442 63596315 ID=cds.MS.gene67917.t1;Parent=MS.gene67917.t1
chr7.2 exon 63595906 63596011 63595906 ID=MS.gene67917.t1.exon5;Parent=MS.gene67917.t1
chr7.2 CDS 63595906 63596011 63595906 ID=cds.MS.gene67917.t1;Parent=MS.gene67917.t1
chr7.2 exon 63595731 63595745 63595731 ID=MS.gene67917.t1.exon6;Parent=MS.gene67917.t1
chr7.2 CDS 63595731 63595745 63595731 ID=cds.MS.gene67917.t1;Parent=MS.gene67917.t1
Gene Sequence

>MS.gene67917

ATGCATCTGGTTGAAGTGGTAGATCTGGGTCATACGAAGAAGAAGAAGAAAGCTGTTAATGTGTAGGAAATCCAATAAATTATGGGTAATTAGGTAAATTTACATGTCAACAAATTTGGATTTATTGGATTCAATTTTCCTCTGTCGTAGAAGCTCTAATTTATGGCTTTGAGTGATTCACGTTTGGGGCTTGAAACCTAGCTTTGATTCTCATTATCATCACCTAAGATGGCTTCTCAGCGTTCAATTCCAACTTTAGACAGAATCAGCGCCCTTCCAGATTCCGTTATCTGCCACATCCTCTCTTTTCTCCCTACCAAACAATCTGCCGCAACAAGCATCCTCTCCAAAAGATGGAAACCATTGTGGCTCGCAGTTTCTACTCTTGACTTCGACGAACGAAACTTTACAGACTTCAACACTTTTCGACTTTTCGTCTACTCAGTCATGCTCGCCCGTGACCCCACATTGCCTATCCGATCGTTCCGCCTCAAAAGTCGGGGCACATCTTCTGGTTTCAATCCACATGATGTCAATAGATTTATTAATGCTGCTATGCAACGTGGAATTCAGAATCTCAACCTTGACATAGGTTTCTTTAAGTTACCTACCTGTGTTTTTAGTTGCATTGACCTCACTGTTCTGAAGTTGATGTCGCTAAAAATACGCGAGCTTCCCGATGTCAACTTTCCATTGCTCAAAACACTTCATTTGGATTCAATCTCTTTCCGCCCATCTGGTGCTCATAGCCATAGGTGTTTTAAAAGGCTTCTCTCTGGGTGTCCTGTTTTAGAGGATTTGCATGCAACAAGTTTATTCCTGGGTCGTTTTCCAGAAGAAGAGTTTAATGGCTTACACCAATTAGTGAGAGCAAATATTCATTCAACCCCAATGGCTTGGGTTCGTAATGCAAAGTTTCTATCCACAAAACTGGTATGAATCCCAATGGTTTATCATGTTAAAAACAAATTTGGTTGGTTTCTTTTATTTTTAATTTTTTGGTACAAAAGTTTGGTTGATTTCTAACGTTTGCTTTTGCAACACATGTAGAGGCGCTCATATGACTACCAGGTTCCCACCTTTCAAAATTTGACTCACATGGAGATTGGATTTGAATTGAGATATGATTGGCTTGGGAAGTGGAAGTGGTTGACAGAAATGCTCCAAAATTGTCCTAATCTTCAGAATCTTACCATTCGCGAGGTCTTATTTGTCGATGTTAAATGATGATCATTTTTTCTAATCATACTTCCATCATTTTGATTACTTTTTCTAAAAATATTGTTTGTTGTTTGATAGGATTCTAGTTATAAGAATGAAATTGACAATGACAGTTGGATGGACCCACCAATTGTTCCAGAATGTCTTTCAACTCAGCTTAAAACATGCTCGCTTATAGCTTTTAAAGGCATGAAGTGTGAGCTAAAGTTTGTAGAGTACATTTTGAAGAGTGCAAAAACACTGCACACCATGAAAATTTGTGTCTCACCAGTGGATTTAAATATAAAGCTCCAGATGCTAATGAAATTATATTTGTGCCCAAGGGGCTCTACTACATGTAAACTCTCATTTGAATGAGAAAGGTTAGGGCATATCTCTACTTTAGTTTCTACTTCCTTCTGTTTTCAAATAAATATTTGATTCTAGCTCCCACCCACCTTTTTGAAATTTCCATTGTTAGTGATAATTGCTTGTGTTGAGTTATATTGATGTTTATCAATGTCTGGCAGTTGTTCACTAAGTATAGATATAATTTATAACCGCTCAAGGGCTAACCATGTAGTTCTAAGGCTCTATGCTAATGCTGCAAAAGTATTGTCTTTTGACAAAATCAAGGTTTGCCGTTGGTGCATGTGTATTTTACTTGTATAGTGAACATGTTTATTGTGGACTCGTGGAAAAGATAATTTGCAACTACGGAGACTTGCTTAACTAATTTAACCATGGCTCTTGCCTCTTAAGTTTCGTTCATGTGTTGATTGATTGGTGTTTGAAGCAAAATGGTTGCTAG
Protein sequence

>MS.gene67917.t1

MHLVEVVDLGHTKKKKKAVNVFINAAMQRGIQNLNLDIGFFKLPTCVFSCIDLTVLKLMSLKIRELPDVNFPLLKTLHLDSISFRPSGAHSHRCFKRLLSGCPVLEDLHATSLFLGRFPEEEFNGLHQLVRANIHSTPMAWVRNAKFLSTKLRRSYDYQVPTFQNLTHMEIGFELRYDWLGKWKWLTEMLQNCPNLQNLTIREDSSYKNEIDNDSWMDPPIVPECLSTQLKTCSLIAFKGMKCELNCSLSIDIIYNRSRANHVVLRLYANAAKVLSFDKIKQNGC