AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30057

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30057.t1 MTR_7g033990 76.569 239 49 5 11 245 59 294 1.11e-111 327
MS.gene30057.t1 MTR_7g033915 66.667 237 58 4 11 245 59 276 9.64e-107 313
MS.gene30057.t1 MTR_7g034120 57.269 227 86 6 26 245 1 223 4.87e-77 235
MS.gene30057.t1 MTR_7g034115 43.154 241 120 6 12 244 60 291 3.48e-54 179
MS.gene30057.t1 MTR_1g041245 45.455 242 114 7 12 244 60 292 5.40e-54 179
MS.gene30057.t1 MTR_5g012840 41.250 240 92 5 14 249 40 234 9.68e-48 160
MS.gene30057.t1 MTR_7g034110 42.857 238 90 4 12 245 60 255 6.95e-44 151
MS.gene30057.t1 MTR_7g115270 39.526 253 132 8 11 244 60 310 4.69e-43 150
MS.gene30057.t1 MTR_7g032380 38.333 240 106 9 12 244 60 264 4.87e-43 149
MS.gene30057.t1 MTR_7g033945 58.065 124 49 2 11 133 59 180 3.84e-41 139
MS.gene30057.t1 MTR_7g056433 39.464 261 126 10 3 244 50 297 4.19e-41 145
MS.gene30057.t1 MTR_7g032370 36.885 244 121 7 12 244 39 260 5.50e-40 141
MS.gene30057.t1 MTR_5g013500 37.302 252 118 9 11 244 43 272 5.67e-35 128
MS.gene30057.t1 MTR_7g098510 37.759 241 120 10 18 243 73 298 1.67e-32 122
MS.gene30057.t1 MTR_7g098480 37.597 258 128 13 6 249 64 302 2.38e-32 123
MS.gene30057.t1 MTR_3g108560 35.656 244 133 8 12 245 69 298 6.66e-32 119
MS.gene30057.t1 MTR_7g056430 35.918 245 115 7 11 244 57 270 1.05e-31 123
MS.gene30057.t1 MTR_7g056420 35.918 245 115 7 11 244 57 270 1.34e-31 122
MS.gene30057.t1 MTR_3g108560 35.656 244 133 8 12 245 69 298 2.47e-31 119
MS.gene30057.t1 MTR_7g098570 36.032 247 128 9 18 249 75 306 2.43e-30 117
MS.gene30057.t1 MTR_7g088260 35.294 255 132 9 12 247 140 380 1.13e-29 115
MS.gene30057.t1 MTR_0492s0020 36.709 237 127 9 16 245 139 359 1.90e-29 115
MS.gene30057.t1 MTR_0543s0010 36.709 237 127 9 16 245 139 359 2.62e-29 114
MS.gene30057.t1 MTR_3g040700 35.484 248 122 10 13 244 90 315 4.73e-28 111
MS.gene30057.t1 MTR_3g036250 33.730 252 131 10 13 249 52 282 8.04e-27 106
MS.gene30057.t1 MTR_3g108150 34.008 247 137 9 12 245 62 295 1.63e-26 106
MS.gene30057.t1 MTR_7g056287 34.199 231 133 7 18 242 62 279 3.24e-26 105
MS.gene30057.t1 MTR_7g056277 33.906 233 135 7 15 241 315 534 2.92e-25 104
MS.gene30057.t1 MTR_8g085430 31.373 255 137 8 14 246 62 300 6.34e-25 101
MS.gene30057.t1 MTR_3g082890 35.039 254 123 11 22 245 73 314 1.03e-22 96.3
MS.gene30057.t1 MTR_7g026500 33.929 224 128 8 34 244 89 305 3.31e-22 94.7
MS.gene30057.t1 MTR_3g082890 35.178 253 122 11 22 244 153 393 4.00e-22 95.1
MS.gene30057.t1 MTR_3g071850 33.621 232 121 9 35 247 102 319 8.42e-22 94.4
MS.gene30057.t1 MTR_3g087260 37.688 199 96 10 63 248 184 367 3.18e-21 92.4
MS.gene30057.t1 MTR_4g134150 34.896 192 101 9 11 197 58 230 1.33e-20 87.4
MS.gene30057.t1 MTR_6g045333 34.061 229 118 9 35 244 139 353 2.49e-20 89.7
MS.gene30057.t1 MTR_5g007410 31.559 263 149 12 1 244 67 317 7.90e-20 88.2
MS.gene30057.t1 MTR_3g023630 29.555 247 155 9 11 249 56 291 8.56e-20 87.4
MS.gene30057.t1 MTR_7g056020 31.441 229 131 8 26 245 72 283 3.21e-19 86.7
MS.gene30057.t1 MTR_3g109982 38.690 168 84 8 90 244 222 383 5.71e-19 86.3
MS.gene30057.t1 MTR_3g109982 37.107 159 85 5 11 163 61 210 2.60e-16 78.6
MS.gene30057.t1 MTR_7g060470 33.032 221 116 8 55 246 86 303 5.85e-19 85.5
MS.gene30057.t1 MTR_1g108820 30.116 259 141 11 14 247 59 302 6.67e-19 85.1
MS.gene30057.t1 MTR_3g110010 38.690 168 84 8 90 244 222 383 7.40e-19 85.9
MS.gene30057.t1 MTR_3g110010 37.107 159 85 5 11 163 61 210 2.20e-16 78.6
MS.gene30057.t1 MTR_5g039470 31.890 254 132 13 14 244 39 274 7.94e-19 84.3
MS.gene30057.t1 MTR_1g108820 29.688 256 141 10 14 245 59 299 9.39e-19 84.3
MS.gene30057.t1 MTR_7g007080 29.885 261 142 11 9 249 54 293 1.03e-18 84.7
MS.gene30057.t1 MTR_5g073370 30.952 252 140 10 8 247 62 291 2.20e-18 83.6
MS.gene30057.t1 MTR_5g073420 30.233 258 146 11 3 244 49 288 4.42e-18 82.8
MS.gene30057.t1 MTR_4g039440 30.769 260 148 11 4 244 73 319 6.89e-18 82.4
MS.gene30057.t1 MTR_3g105060 29.752 242 146 8 11 243 62 288 1.15e-17 81.6
MS.gene30057.t1 MTR_5g045170 29.323 266 147 9 3 244 52 300 2.35e-17 80.9
MS.gene30057.t1 MTR_7g033940 55.556 63 28 0 11 73 142 204 2.42e-17 78.6
MS.gene30057.t1 MTR_1g085120 29.961 257 145 10 9 245 228 469 8.51e-17 79.3
MS.gene30057.t1 MTR_5g008950 30.556 252 130 12 12 244 48 273 2.10e-16 78.2
MS.gene30057.t1 MTR_1g085120 30.078 256 144 10 9 244 141 381 2.27e-16 78.2
MS.gene30057.t1 MTR_1g085120 30.078 256 144 10 9 244 216 456 3.05e-16 78.2
MS.gene30057.t1 MTR_0009s0080 31.102 254 138 11 11 244 72 308 3.29e-16 77.8
MS.gene30057.t1 MTR_7g056447 39.716 141 67 6 9 144 58 185 1.65e-15 74.7
MS.gene30057.t1 MTR_1g108800 31.481 216 113 9 35 235 51 246 2.49e-15 74.7
MS.gene30057.t1 MTR_5g058000 32.636 239 136 8 15 244 63 285 2.93e-15 74.7
MS.gene30057.t1 MTR_3g107120 31.405 242 132 12 17 242 78 301 6.10e-15 73.9
MS.gene30057.t1 MTR_5g061680 30.544 239 126 10 13 244 65 270 6.54e-15 73.2
MS.gene30057.t1 MTR_5g058100 32.530 249 133 11 14 244 63 294 2.02e-14 72.4
MS.gene30057.t1 MTR_3g107100 29.278 263 144 13 12 249 61 306 2.29e-14 72.4
MS.gene30057.t1 MTR_6g022500 32.444 225 124 9 34 244 176 386 1.24e-13 70.1
MS.gene30057.t1 MTR_2g007400 28.736 261 151 12 7 245 59 306 3.10e-13 68.9
MS.gene30057.t1 MTR_5g031970 30.000 250 141 10 4 245 44 267 1.58e-12 66.6
MS.gene30057.t1 MTR_5g073400 36.522 115 61 3 35 147 7 111 1.59e-12 63.5
MS.gene30057.t1 MTR_3g099830 28.986 207 120 8 55 244 79 275 2.71e-12 65.9
MS.gene30057.t1 MTR_5g073340 32.386 176 99 6 85 244 99 270 3.94e-12 65.1
MS.gene30057.t1 MTR_5g076150 35.135 185 84 8 92 244 26 206 3.94e-12 64.3
MS.gene30057.t1 MTR_3g467400 34.759 187 101 11 11 179 51 234 6.06e-12 65.1
MS.gene30057.t1 MTR_5g039450 29.365 252 125 13 14 244 60 279 8.28e-12 64.7
MS.gene30057.t1 MTR_4g080610 31.875 160 91 6 101 245 109 265 1.31e-11 63.9
MS.gene30057.t1 MTR_5g063950 30.263 228 125 11 33 245 60 268 1.37e-11 63.9
MS.gene30057.t1 MTR_7g055943 30.041 243 139 10 18 244 98 325 3.57e-11 62.8
MS.gene30057.t1 MTR_3g026920 31.214 173 79 6 91 243 167 319 3.60e-11 62.8
MS.gene30057.t1 MTR_7g056417 37.333 150 76 7 91 223 10 158 4.06e-11 60.1
MS.gene30057.t1 MTR_1g053025 27.933 179 102 8 89 247 131 302 4.46e-11 62.4
MS.gene30057.t1 MTR_5g045510 33.333 153 86 5 29 177 82 222 4.57e-11 62.4
MS.gene30057.t1 MTR_2g007500 33.511 188 93 9 79 242 111 290 5.65e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 58 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCAAATGTGGTGCCTCTA+AGG 0.205564 7.1:-63112602 MS.gene30057:CDS
CATTGATATTATTGCATATC+TGG 0.214109 7.1:+63111477 None:intergenic
AGCTTATATTCACATCAAAT+TGG 0.310979 7.1:-63111989 MS.gene30057:CDS
GTTTAAACACTTGCCCAATT+TGG 0.316334 7.1:-63112233 MS.gene30057:CDS
TTGCAAAACGAAAACAAATT+AGG 0.320092 7.1:-63112484 MS.gene30057:CDS
AATGTTTGCTCTGACCAAAT+TGG 0.323622 7.1:+63112219 None:intergenic
CACGAAATATTCAATTTGCT+TGG 0.381703 7.1:-63112183 MS.gene30057:CDS
ATGTTTGCTCTGACCAAATT+GGG 0.383897 7.1:+63112220 None:intergenic
CTATGTATGCATTTGAAAGA+TGG 0.393659 7.1:-63112265 MS.gene30057:CDS
CAGTGGGTCCCATCCCTTAG+AGG 0.410709 7.1:+63112588 None:intergenic
GAAAGATTGAAGGGGCAAGG+TGG 0.411583 7.1:+63112627 None:intergenic
TATTTGCAACTCCTCTAGAA+TGG 0.440191 7.1:+63112297 None:intergenic
CCTTAGAGGCACCACATTTG+AGG 0.457206 7.1:+63112602 None:intergenic
CAAAACTCTCCGATTGGAAA+AGG 0.458941 7.1:-63112362 MS.gene30057:CDS
CAAGCAAATTGAATATTTCG+TGG 0.460201 7.1:+63112184 None:intergenic
TTTCTAGCAACCACTTCCAT+TGG 0.467611 7.1:+63111961 None:intergenic
ATGCATTTGAAAGATGGTAT+TGG 0.467638 7.1:-63112259 MS.gene30057:CDS
ATTTGCAACTCCTCTAGAAT+GGG 0.480717 7.1:+63112298 None:intergenic
TTCTAGCAACCACTTCCATT+GGG 0.485071 7.1:+63111962 None:intergenic
TTTGTTTATTATGCCATGCT+CGG 0.498657 7.1:-63112658 MS.gene30057:CDS
ATTTGAGGTGGAAAGATTGA+AGG 0.498739 7.1:+63112617 None:intergenic
CTCTAAGGGATGGGACCCAC+TGG 0.499288 7.1:-63112587 MS.gene30057:CDS
ACCAATCGATTGATATCCAG+TGG 0.502266 7.1:+63112571 None:intergenic
GAATGGTAACCTGAGTATGC+GGG 0.508471 7.1:+63113116 None:intergenic
AAAGATTGAAGGGGCAAGGT+GGG 0.510237 7.1:+63112628 None:intergenic
AGTAGGGGAAAATCGATTTG+AGG 0.510436 7.1:+63112385 None:intergenic
GTTTCTAGAATTGAAAATTG+TGG 0.512806 7.1:+63112450 None:intergenic
CTCAAATGTGGTGCCTCTAA+GGG 0.520083 7.1:-63112601 MS.gene30057:CDS
GAAGGGGCAAGGTGGGGTCA+CGG 0.520986 7.1:+63112635 None:intergenic
TTGAAAATTGTGGAAACTGT+AGG 0.536949 7.1:+63112460 None:intergenic
ACAAGGTTCCCCGCATACTC+AGG 0.539239 7.1:-63113125 MS.gene30057:intron
GGTGGGGTCACGGCCGAGCA+TGG 0.549481 7.1:+63112645 None:intergenic
CCTACTCAAAACTCTCCGAT+TGG 0.553375 7.1:-63112368 MS.gene30057:CDS
AGGAACTCAGAATTTCATCA+TGG 0.554890 7.1:-63112530 MS.gene30057:CDS
CAATCTTTCCACCTCAAATG+TGG 0.559675 7.1:-63112613 MS.gene30057:CDS
CATCAAATTGGCGTACCCAA+TGG 0.562192 7.1:-63111977 MS.gene30057:CDS
CCCACTGGATATCAATCGAT+TGG 0.565331 7.1:-63112572 MS.gene30057:CDS
GTGGAAAGATTGAAGGGGCA+AGG 0.566925 7.1:+63112624 None:intergenic
AATGTGGTGCCTCTAAGGGA+TGG 0.567873 7.1:-63112597 MS.gene30057:CDS
CATAAATACAACCTTGTGAA+GGG 0.568527 7.1:+63111905 None:intergenic
ATGTGGTGCCTCTAAGGGAT+GGG 0.569283 7.1:-63112596 MS.gene30057:CDS
TTTGAGGTGGAAAGATTGAA+GGG 0.575816 7.1:+63112618 None:intergenic
TGGCATAATAAACAAAATGT+CGG 0.578653 7.1:+63112665 None:intergenic
ACATAAATACAACCTTGTGA+AGG 0.579191 7.1:+63111904 None:intergenic
ATTGGCGTACCCAATGGAAG+TGG 0.579439 7.1:-63111971 MS.gene30057:CDS
TAGAGGCACCACATTTGAGG+TGG 0.600933 7.1:+63112605 None:intergenic
AACCTTGTTGACGGAAGACT+AGG 0.604502 7.1:+63113140 None:intergenic
TGCCTAGTCTTCCGTCAACA+AGG 0.604853 7.1:-63113142 MS.gene30057:CDS
TATGCGGGGAACCTTGTTGA+CGG 0.606709 7.1:+63113131 None:intergenic
TCAAAATCTTACCCTTCACA+AGG 0.613722 7.1:-63111916 MS.gene30057:intron
CGAGGGGTGTCCCATTCTAG+AGG 0.620903 7.1:-63112308 MS.gene30057:CDS
AAGATTGAAGGGGCAAGGTG+GGG 0.629379 7.1:+63112629 None:intergenic
GTTCGCGCTGCTGTGCAAAG+AGG 0.632333 7.1:-63112550 MS.gene30057:CDS
AGAATGGTAACCTGAGTATG+CGG 0.635409 7.1:+63113115 None:intergenic
TGTTGACGGAAGACTAGGCA+TGG 0.645221 7.1:+63113145 None:intergenic
TTGAGGTGGAAAGATTGAAG+GGG 0.664534 7.1:+63112619 None:intergenic
AATGGTAACCTGAGTATGCG+GGG 0.673839 7.1:+63113117 None:intergenic
CCAATCGATTGATATCCAGT+GGG 0.697481 7.1:+63112572 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAACGAATATTTATT+TGG + chr7.1:63111630-63111649 None:intergenic 15.0%
!! CTAATATAACATTAGAAAAT+AGG + chr7.1:63113128-63113147 None:intergenic 15.0%
!!! TTAATTTTTTCCTTTTTATG+TGG - chr7.1:63112787-63112806 MS.gene30057:intron 15.0%
!! TATTTATTTGGAGAAAACTT+AGG + chr7.1:63111618-63111637 None:intergenic 20.0%
! AAGATAAATCCATTAGCATT+TGG + chr7.1:63113029-63113048 None:intergenic 25.0%
! AATCCTATAACACATAAGAA+TGG + chr7.1:63111532-63111551 None:intergenic 25.0%
! AGCTTATATTCACATCAAAT+TGG - chr7.1:63112639-63112658 MS.gene30057:CDS 25.0%
! ATGAATGAAAGTTTACATGT+CGG + chr7.1:63113069-63113088 None:intergenic 25.0%
! TCATCAATGAATATTTCAGA+TGG + chr7.1:63111674-63111693 None:intergenic 25.0%
! TGGCATAATAAACAAAATGT+CGG + chr7.1:63111966-63111985 None:intergenic 25.0%
! TTACCATTCTTATGTGTTAT+AGG - chr7.1:63111526-63111545 MS.gene30057:intron 25.0%
! TTCATTCATTTGATTGAAGA+AGG - chr7.1:63113080-63113099 MS.gene30057:intron 25.0%
! TTGCAAAACGAAAACAAATT+AGG - chr7.1:63112144-63112163 MS.gene30057:intron 25.0%
!! TTTTCAACTTAAGAACAACA+AGG + chr7.1:63112203-63112222 None:intergenic 25.0%
!!! AGACATTTTGGAATAATTTG+TGG + chr7.1:63112862-63112881 None:intergenic 25.0%
!!! GTTTCTAGAATTGAAAATTG+TGG + chr7.1:63112181-63112200 None:intergenic 25.0%
ACATAAATACAACCTTGTGA+AGG + chr7.1:63112727-63112746 None:intergenic 30.0%
ATGCATTTGAAAGATGGTAT+TGG - chr7.1:63112369-63112388 MS.gene30057:CDS 30.0%
CAAGCAAATTGAATATTTCG+TGG + chr7.1:63112447-63112466 None:intergenic 30.0%
CATAAATACAACCTTGTGAA+GGG + chr7.1:63112726-63112745 None:intergenic 30.0%
CTATGTATGCATTTGAAAGA+TGG - chr7.1:63112363-63112382 MS.gene30057:CDS 30.0%
CTGTCAAAATCCACATAAAA+AGG + chr7.1:63112800-63112819 None:intergenic 30.0%
CTTCAACTTAATGTAACTCT+AGG + chr7.1:63112535-63112554 None:intergenic 30.0%
TTGAAAATTGTGGAAACTGT+AGG + chr7.1:63112171-63112190 None:intergenic 30.0%
TTTGTTTATTATGCCATGCT+CGG - chr7.1:63111970-63111989 MS.gene30057:CDS 30.0%
! AAAGTTTTTGCGTTTAGAAG+TGG - chr7.1:63112479-63112498 MS.gene30057:CDS 30.0%
! AGTAGAGAAGAAAGACATTT+TGG + chr7.1:63112874-63112893 None:intergenic 30.0%
! CACGAAATATTCAATTTGCT+TGG - chr7.1:63112445-63112464 MS.gene30057:CDS 30.0%
! TTTAAAGCACCAAATGCTAA+TGG - chr7.1:63113017-63113036 MS.gene30057:intron 30.0%
! TTTTCGTAACTTAACTCACA+TGG - chr7.1:63112616-63112635 MS.gene30057:CDS 30.0%
!! AGATTTTGATAAGCTTATCG+AGG - chr7.1:63112302-63112321 MS.gene30057:CDS 30.0%
!! ATTTTGATAAGCTTATCGAG+GGG - chr7.1:63112304-63112323 MS.gene30057:CDS 30.0%
!! GATTTTGATAAGCTTATCGA+GGG - chr7.1:63112303-63112322 MS.gene30057:CDS 30.0%
!!! AGGGTAAGATTTTGAAGTTT+AGG + chr7.1:63112707-63112726 None:intergenic 30.0%
!!! GGGTAAGATTTTGAAGTTTA+GGG + chr7.1:63112706-63112725 None:intergenic 30.0%
AATGTTTGCTCTGACCAAAT+TGG + chr7.1:63112412-63112431 None:intergenic 35.0%
AGGAACTCAGAATTTCATCA+TGG - chr7.1:63112098-63112117 MS.gene30057:intron 35.0%
ATGTTTGCTCTGACCAAATT+GGG + chr7.1:63112411-63112430 None:intergenic 35.0%
GACAGTTGAAATTGAACGTA+GGG + chr7.1:63111776-63111795 None:intergenic 35.0%
GATGGTGAGAATGAAAGTTA+AGG + chr7.1:63111742-63111761 None:intergenic 35.0%
GTTTAAACACTTGCCCAATT+TGG - chr7.1:63112395-63112414 MS.gene30057:CDS 35.0%
TACAGTAACTTATGTGCTGT+TGG + chr7.1:63111595-63111614 None:intergenic 35.0%
TCAAAATCTTACCCTTCACA+AGG - chr7.1:63112712-63112731 MS.gene30057:intron 35.0%
TGCTCGCTTATAGATTACAA+AGG - chr7.1:63112901-63112920 MS.gene30057:intron 35.0%
TGGATTTATCTTTGTGTCCA+CGG - chr7.1:63113037-63113056 MS.gene30057:intron 35.0%
! ATTTGAGGTGGAAAGATTGA+AGG + chr7.1:63112014-63112033 None:intergenic 35.0%
! TATTTGCAACTCCTCTAGAA+TGG + chr7.1:63112334-63112353 None:intergenic 35.0%
! TTTGAGGTGGAAAGATTGAA+GGG + chr7.1:63112013-63112032 None:intergenic 35.0%
!! ATTTGCAACTCCTCTAGAAT+GGG + chr7.1:63112333-63112352 None:intergenic 35.0%
!! TGCTTTAAAGTTAAATCCCC+TGG + chr7.1:63113006-63113025 None:intergenic 35.0%
!! TGTGGATTTTGACAGCTTTA+TGG - chr7.1:63112805-63112824 MS.gene30057:intron 35.0%
!! TTTTGACAGCTTTATGGACA+CGG - chr7.1:63112811-63112830 MS.gene30057:intron 35.0%
!!! CCACGTGTTATTTTCTGATA+GGG - chr7.1:63111562-63111581 MS.gene30057:intron 35.0%
AAAGTTAAGGTTTCAGCGTG+AGG + chr7.1:63111729-63111748 None:intergenic 40.0%
ACCAATCGATTGATATCCAG+TGG + chr7.1:63112060-63112079 None:intergenic 40.0%
AGAATGGTAACCTGAGTATG+CGG + chr7.1:63111516-63111535 None:intergenic 40.0%
AGAGAGGATGTGGATGATAA+CGG + chr7.1:63111824-63111843 None:intergenic 40.0%
AGTTGAAATTGAACGTAGGG+AGG + chr7.1:63111773-63111792 None:intergenic 40.0%
ATCACTACTCATCACTAGCT+AGG - chr7.1:63112509-63112528 MS.gene30057:CDS 40.0%
CAAAACTCTCCGATTGGAAA+AGG - chr7.1:63112266-63112285 MS.gene30057:CDS 40.0%
CAATCTTTCCACCTCAAATG+TGG - chr7.1:63112015-63112034 MS.gene30057:CDS 40.0%
CCAAAAGATGGAATCCACTA+TGG - chr7.1:63111884-63111903 MS.gene30057:intron 40.0%
CCAATCGATTGATATCCAGT+GGG + chr7.1:63112059-63112078 None:intergenic 40.0%
CCCTATCAGAAAATAACACG+TGG + chr7.1:63111565-63111584 None:intergenic 40.0%
CGACAGTTGAAATTGAACGT+AGG + chr7.1:63111777-63111796 None:intergenic 40.0%
GATTTATCTTTGTGTCCACG+GGG - chr7.1:63113039-63113058 MS.gene30057:intron 40.0%
GGATTTATCTTTGTGTCCAC+GGG - chr7.1:63113038-63113057 MS.gene30057:intron 40.0%
TAAAGTTAAATCCCCTGGAG+AGG + chr7.1:63113001-63113020 None:intergenic 40.0%
TAGCGAAATCTGCAAAGTCA+TGG + chr7.1:63111939-63111958 None:intergenic 40.0%
TCAGAAAATAACACGTGGCT+AGG + chr7.1:63111560-63111579 None:intergenic 40.0%
TGTCATTGTGTGCAGTAAGT+TGG + chr7.1:63112971-63112990 None:intergenic 40.0%
TTCTAGCAACCACTTCCATT+GGG + chr7.1:63112669-63112688 None:intergenic 40.0%
TTGAGGTGGAAAGATTGAAG+GGG + chr7.1:63112012-63112031 None:intergenic 40.0%
! GAATCGCAACCTTTTCCAAT+CGG + chr7.1:63112278-63112297 None:intergenic 40.0%
! TTTCTAGCAACCACTTCCAT+TGG + chr7.1:63112670-63112689 None:intergenic 40.0%
!! AGTAGGGGAAAATCGATTTG+AGG + chr7.1:63112246-63112265 None:intergenic 40.0%
!! ATGTGGATGATAACGGAATC+AGG + chr7.1:63111817-63111836 None:intergenic 40.0%
!! TTATGGACACGGTATTGATG+AGG - chr7.1:63112822-63112841 MS.gene30057:intron 40.0%
!!! AATCGGAGAGTTTTGAGTAG+GGG + chr7.1:63112261-63112280 None:intergenic 40.0%
!!! CAATCGGAGAGTTTTGAGTA+GGG + chr7.1:63112262-63112281 None:intergenic 40.0%
!!! CCATAGTGGATTCCATCTTT+TGG + chr7.1:63111887-63111906 None:intergenic 40.0%
!!! GCCACGTGTTATTTTCTGAT+AGG - chr7.1:63111561-63111580 MS.gene30057:intron 40.0%
AAAGATTGAAGGGGCAAGGT+GGG + chr7.1:63112003-63112022 None:intergenic 45.0%
AAATAACACGTGGCTAGGCA+TGG + chr7.1:63111555-63111574 None:intergenic 45.0%
AACCTTGTTGACGGAAGACT+AGG + chr7.1:63111491-63111510 None:intergenic 45.0%
AATGGTAACCTGAGTATGCG+GGG + chr7.1:63111514-63111533 None:intergenic 45.0%
AGTCATGGTCGTCGAAATCA+AGG + chr7.1:63111924-63111943 None:intergenic 45.0%
ATGACAATTAGTGCCTCTCC+AGG - chr7.1:63112985-63113004 MS.gene30057:intron 45.0%
CAAGCATCCTCTCCAAAAGA+TGG - chr7.1:63111872-63111891 MS.gene30057:intron 45.0%
CATCAAATTGGCGTACCCAA+TGG - chr7.1:63112651-63112670 MS.gene30057:CDS 45.0%
CCCACTGGATATCAATCGAT+TGG - chr7.1:63112056-63112075 MS.gene30057:intron 45.0%
CCTACTCAAAACTCTCCGAT+TGG - chr7.1:63112260-63112279 MS.gene30057:CDS 45.0%
CTCAAATGTGGTGCCTCTAA+GGG - chr7.1:63112027-63112046 MS.gene30057:CDS 45.0%
GAATGGTAACCTGAGTATGC+GGG + chr7.1:63111515-63111534 None:intergenic 45.0%
GTCATGGTCGTCGAAATCAA+GGG + chr7.1:63111923-63111942 None:intergenic 45.0%
GTTTGGTAGGGAGAAAAGAG+AGG + chr7.1:63111840-63111859 None:intergenic 45.0%
TAGGGAGAAAAGAGAGGATG+TGG + chr7.1:63111834-63111853 None:intergenic 45.0%
TGACAATTAGTGCCTCTCCA+GGG - chr7.1:63112986-63113005 MS.gene30057:intron 45.0%
TTGCGGCAGATTGTTTGGTA+GGG + chr7.1:63111852-63111871 None:intergenic 45.0%
! TTTGGAGAGGATGCTTGTTG+CGG + chr7.1:63111869-63111888 None:intergenic 45.0%
!! ACGGTATTGATGAGGACGAT+TGG - chr7.1:63112830-63112849 MS.gene30057:intron 45.0%
!! GTGGATTCCATCTTTTGGAG+AGG + chr7.1:63111882-63111901 None:intergenic 45.0%
!!! CCAATCGGAGAGTTTTGAGT+AGG + chr7.1:63112263-63112282 None:intergenic 45.0%
AAGATTGAAGGGGCAAGGTG+GGG + chr7.1:63112002-63112021 None:intergenic 50.0%
ATGGTCGTCGAAATCAAGGG+TGG + chr7.1:63111920-63111939 None:intergenic 50.0%
ATTGGCGTACCCAATGGAAG+TGG - chr7.1:63112657-63112676 MS.gene30057:CDS 50.0%
CCTCAAATGTGGTGCCTCTA+AGG - chr7.1:63112026-63112045 MS.gene30057:CDS 50.0%
CGTAGGGAGGACATTTCAGA+TGG + chr7.1:63111760-63111779 None:intergenic 50.0%
GAAAGATTGAAGGGGCAAGG+TGG + chr7.1:63112004-63112023 None:intergenic 50.0%
GACAATTAGTGCCTCTCCAG+GGG - chr7.1:63112987-63113006 MS.gene30057:intron 50.0%
GTGGAAAGATTGAAGGGGCA+AGG + chr7.1:63112007-63112026 None:intergenic 50.0%
GTTAAGGTTTCAGCGTGAGG+AGG + chr7.1:63111726-63111745 None:intergenic 50.0%
GTTGCGGCAGATTGTTTGGT+AGG + chr7.1:63111853-63111872 None:intergenic 50.0%
TATGCGGGGAACCTTGTTGA+CGG + chr7.1:63111500-63111519 None:intergenic 50.0%
TGGTCGTCGAAATCAAGGGT+GGG + chr7.1:63111919-63111938 None:intergenic 50.0%
! AATGTGGTGCCTCTAAGGGA+TGG - chr7.1:63112031-63112050 MS.gene30057:CDS 50.0%
! ATGTGGTGCCTCTAAGGGAT+GGG - chr7.1:63112032-63112051 MS.gene30057:CDS 50.0%
! GCTTGTTGCGGCAGATTGTT+TGG + chr7.1:63111857-63111876 None:intergenic 50.0%
! TGCCTAGTCTTCCGTCAACA+AGG - chr7.1:63111486-63111505 MS.gene30057:intron 50.0%
!! CCTTAGAGGCACCACATTTG+AGG + chr7.1:63112029-63112048 None:intergenic 50.0%
!! TAGAGGCACCACATTTGAGG+TGG + chr7.1:63112026-63112045 None:intergenic 50.0%
ACAAGGTTCCCCGCATACTC+AGG - chr7.1:63111503-63111522 MS.gene30057:intron 55.0%
ATGCTCGCTACGCTGTTGCA+TGG + chr7.1:63112585-63112604 None:intergenic 55.0%
GTGGGAACTGAGAGCCATAG+TGG + chr7.1:63111901-63111920 None:intergenic 55.0%
TGCTCGCTACGCTGTTGCAT+GGG + chr7.1:63112584-63112603 None:intergenic 55.0%
CAGTGGGTCCCATCCCTTAG+AGG + chr7.1:63112043-63112062 None:intergenic 60.0%
GTTCGCGCTGCTGTGCAAAG+AGG - chr7.1:63112078-63112097 MS.gene30057:intron 60.0%
TTACATGTCGGAGAGCCCCG+TGG + chr7.1:63113057-63113076 None:intergenic 60.0%
! CTCTAAGGGATGGGACCCAC+TGG - chr7.1:63112041-63112060 MS.gene30057:intron 60.0%
!! CGAGGGGTGTCCCATTCTAG+AGG - chr7.1:63112320-63112339 MS.gene30057:CDS 60.0%
GAAGGGGCAAGGTGGGGTCA+CGG + chr7.1:63111996-63112015 None:intergenic 65.0%
GGTGGGGTCACGGCCGAGCA+TGG + chr7.1:63111986-63112005 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 63111485 63113165 63111485 ID=MS.gene30057
chr7.1 mRNA 63111485 63113165 63111485 ID=MS.gene30057.t1;Parent=MS.gene30057
chr7.1 exon 63113126 63113165 63113126 ID=MS.gene30057.t1.exon1;Parent=MS.gene30057.t1
chr7.1 CDS 63113126 63113165 63113126 ID=cds.MS.gene30057.t1;Parent=MS.gene30057.t1
chr7.1 exon 63112150 63112700 63112150 ID=MS.gene30057.t1.exon2;Parent=MS.gene30057.t1
chr7.1 CDS 63112150 63112700 63112150 ID=cds.MS.gene30057.t1;Parent=MS.gene30057.t1
chr7.1 exon 63111917 63112057 63111917 ID=MS.gene30057.t1.exon3;Parent=MS.gene30057.t1
chr7.1 CDS 63111917 63112057 63111917 ID=cds.MS.gene30057.t1;Parent=MS.gene30057.t1
chr7.1 exon 63111485 63111502 63111485 ID=MS.gene30057.t1.exon4;Parent=MS.gene30057.t1
chr7.1 CDS 63111485 63111502 63111485 ID=cds.MS.gene30057.t1;Parent=MS.gene30057.t1
Gene Sequence

>MS.gene30057

ATGCCTAGTCTTCCGTCAACAAGGTTCCCCGCATACTCAGGTTACCATTCTTATGTGTTATAGGATTCCATGCCTAGCCACGTGTTATTTTCTGATAGGGAACAGCACCAACAGCACATAAGTTACTGTACCTAAGTTTTCTCCAAATAAATATTCGTTGTTTTTTCAATCAAAAGTTGCTACTCACCATCTGAAATATTCATTGATGATCGTGTATGTTGTAAATCAGTGCTCTCATCCTCCTCACGCTGAAACCTTAACTTTCATTCTCACCATCTGAAATGTCCTCCCTACGTTCAATTTCAACTGTCGACAGAATCAGCGCTCTTCCTGATTCCGTTATCATCCACATCCTCTCTTTTCTCCCTACCAAACAATCTGCCGCAACAAGCATCCTCTCCAAAAGATGGAATCCACTATGGCTCTCAGTTCCCACCCTTGATTTCGACGACCATGACTTTGCAGATTTCGCTACTTTCCGACATTTTGTTTATTATGCCATGCTCGGCCGTGACCCCACCTTGCCCCTTCAATCTTTCCACCTCAAATGTGGTGCCTCTAAGGGATGGGACCCACTGGATATCAATCGATTGGTTCGCGCTGCTGTGCAAAGAGGAACTCAGAATTTCATCATGGATTTGAGTAAAACTGTTAGAGCATTGCAAAACGAAAACAAATTAGGTCCTACAGTTTCCACAATTTTCAATTCTAGAAACCTTGTTGTTCTTAAGTTGAAAACATTACTAGTGAATGTTCTTCCTCAAATCGATTTTCCCCTACTCAAAACTCTCCGATTGGAAAAGGTTGCGATTCTAAAAGATTTTGATAAGCTTATCGAGGGGTGTCCCATTCTAGAGGAGTTGCAAATAACTTCTTTACTATGTATGCATTTGAAAGATGGTATTGGAGAGTTTAAACACTTGCCCAATTTGGTCAGAGCAAACATTTCTCAATTTGTTCCACGAAATATTCAATTTGCTTGGATTTGCAATGCAAAGTTTTTGCGTTTAGAAGTGGTATGACTATCACTACTCATCACTAGCTAGGCCTAGAGTTACATTAAGTTGAAGCTTATTTCTAATGTTTCTCTTTGTAACCCATGCAACAGCGTAGCGAGCATCAAGTTCACACTTTTCGTAACTTAACTCACATGGAGCTTATATTCACATCAAATTGGCGTACCCAATGGAAGTGGTTGCTAGAAATGCTGAAGAATTGCCCTAAACTTCAAAATCTTACCCTTCACAAGGTTGTATTTATGTCGATGATAATAATTTTTTTGTAGCTCTACTTTCATCTAATTTAATTTTTTCCTTTTTATGTGGATTTTGACAGCTTTATGGACACGGTATTGATGAGGACGATTGGAATGAACCACAAATTATTCCAAAATGTCTTTCTTCTCTACTAAGAACATGCTCGCTTATAGATTACAAAGGCATGAAGTGTAAGCTTCAGTTTGCTGAGTATGTTTTGAAGAATGCCAACTTACTGCACACAATGACAATTAGTGCCTCTCCAGGGGATTTAACTTTAAAGCACCAAATGCTAATGGATTTATCTTTGTGTCCACGGGGCTCTCCGACATGTAAACTTTCATTCATTTGATTGAAGAAGGTTAGCTTACATCTACTTTAATTCCTATTTTCTAATGTTATATTAGATTCCAGATATGCAATAA
Protein sequence

>MS.gene30057.t1

MPSLPSTRFPAYSDFATFRHFVYYAMLGRDPTLPLQSFHLKCGASKGWDPLDINRLVRAAVQRGTQNFIMDLSKTVRALQNENKLGPTVSTIFNSRNLVVLKLKTLLVNVLPQIDFPLLKTLRLEKVAILKDFDKLIEGCPILEELQITSLLCMHLKDGIGEFKHLPNLVRANISQFVPRNIQFAWICNAKFLRLEVRSEHQVHTFRNLTHMELIFTSNWRTQWKWLLEMLKNCPKLQNLTLHKIPDMQ