AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054896

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054896.t1 MTR_7g034120 70.142 211 57 3 1 206 56 265 1.14e-96 285
MS.gene054896.t1 MTR_7g033915 60.476 210 59 7 1 206 129 318 3.95e-75 231
MS.gene054896.t1 MTR_7g033990 64.904 208 65 8 3 206 133 336 9.08e-75 232
MS.gene054896.t1 MTR_7g034110 50.237 211 63 6 1 208 126 297 2.00e-53 176
MS.gene054896.t1 MTR_5g012840 46.890 209 71 5 1 206 101 272 1.21e-49 165
MS.gene054896.t1 MTR_1g041245 45.972 211 96 8 10 206 133 339 5.55e-44 152
MS.gene054896.t1 MTR_7g056433 44.712 208 104 7 9 206 135 341 5.16e-42 147
MS.gene054896.t1 MTR_7g032370 42.857 203 101 6 10 206 112 305 2.23e-39 139
MS.gene054896.t1 MTR_7g034115 42.718 206 96 9 16 206 138 336 1.87e-38 137
MS.gene054896.t1 MTR_7g032380 40.594 202 89 5 10 206 134 309 1.34e-36 132
MS.gene054896.t1 MTR_7g115270 40.889 225 107 11 9 211 139 359 9.02e-36 130
MS.gene054896.t1 MTR_0492s0020 41.546 207 105 8 15 211 207 407 1.01e-33 125
MS.gene054896.t1 MTR_0543s0010 42.029 207 104 8 15 211 207 407 1.51e-33 125
MS.gene054896.t1 MTR_3g108150 39.437 213 117 5 6 206 127 339 2.05e-33 124
MS.gene054896.t1 MTR_7g088260 40.654 214 109 7 6 206 207 415 2.52e-33 125
MS.gene054896.t1 MTR_7g098570 38.571 210 115 7 8 206 139 345 2.72e-32 122
MS.gene054896.t1 MTR_7g098510 38.028 213 114 10 8 207 137 344 2.37e-31 119
MS.gene054896.t1 MTR_3g109982 39.901 203 110 6 15 207 228 428 1.15e-30 119
MS.gene054896.t1 MTR_3g108560 40.376 213 102 10 17 211 141 346 1.19e-30 117
MS.gene054896.t1 MTR_3g087260 39.732 224 112 8 4 211 198 414 1.26e-30 117
MS.gene054896.t1 MTR_7g056020 39.151 212 110 7 8 206 121 326 2.17e-30 118
MS.gene054896.t1 MTR_5g013500 39.899 198 99 7 34 211 125 322 4.26e-30 115
MS.gene054896.t1 MTR_7g056277 40.000 195 109 6 16 206 390 580 6.42e-30 117
MS.gene054896.t1 MTR_3g107100 38.208 212 112 7 9 206 135 341 7.17e-30 115
MS.gene054896.t1 MTR_7g056287 37.436 195 114 6 16 206 134 324 3.90e-28 109
MS.gene054896.t1 MTR_2g007400 36.279 215 109 9 7 200 146 353 4.24e-28 110
MS.gene054896.t1 MTR_5g073420 38.605 215 112 10 3 211 134 334 1.77e-27 108
MS.gene054896.t1 MTR_7g007080 37.198 207 110 7 15 206 137 338 1.86e-27 108
MS.gene054896.t1 MTR_5g073370 40.099 202 104 10 16 206 137 332 3.24e-27 107
MS.gene054896.t1 MTR_4g080610 35.586 222 119 8 7 211 101 315 5.26e-27 106
MS.gene054896.t1 MTR_5g008950 34.434 212 124 7 11 211 117 324 5.64e-27 107
MS.gene054896.t1 MTR_3g082890 36.681 229 114 10 8 207 214 440 1.46e-26 107
MS.gene054896.t1 MTR_7g098480 34.597 211 120 8 8 206 137 341 7.50e-26 104
MS.gene054896.t1 MTR_2g020180 42.515 167 65 7 61 206 14 170 9.02e-26 100
MS.gene054896.t1 MTR_6g022500 36.239 218 123 7 6 211 220 433 9.25e-26 104
MS.gene054896.t1 MTR_3g107120 35.096 208 116 7 9 203 145 346 1.37e-25 103
MS.gene054896.t1 MTR_3g105060 36.620 213 109 9 10 211 137 334 3.91e-25 101
MS.gene054896.t1 MTR_3g036250 34.272 213 118 7 9 211 127 327 4.56e-25 101
MS.gene054896.t1 MTR_7g026500 34.247 219 114 7 7 206 142 349 9.22e-25 101
MS.gene054896.t1 MTR_7g081290 52.174 92 39 2 120 206 122 213 9.60e-25 98.6
MS.gene054896.t1 MTR_5g045170 35.398 226 118 10 5 211 132 348 1.19e-24 100
MS.gene054896.t1 MTR_5g054920 34.731 167 91 6 52 206 2 162 2.94e-24 95.9
MS.gene054896.t1 MTR_5g008920 34.025 241 140 10 1 225 123 360 3.03e-24 99.8
MS.gene054896.t1 MTR_7g007340 34.314 204 118 6 3 196 104 301 3.38e-24 99.4
MS.gene054896.t1 MTR_1g108820 35.827 254 122 14 3 230 123 361 3.56e-24 99.4
MS.gene054896.t1 MTR_6g045333 33.628 226 120 9 4 206 180 398 3.73e-24 99.8
MS.gene054896.t1 MTR_1g108800 40.758 211 100 9 16 211 99 299 3.99e-24 98.6
MS.gene054896.t1 MTR_5g058000 38.462 208 115 6 6 206 125 326 4.38e-24 99.0
MS.gene054896.t1 MTR_7g083740 36.126 191 96 7 33 206 141 322 6.15e-24 98.6
MS.gene054896.t1 MTR_5g083890 33.019 212 113 8 8 197 144 348 6.82e-24 99.8
MS.gene054896.t1 MTR_2g007450 35.498 231 110 10 9 207 155 378 1.42e-23 98.2
MS.gene054896.t1 MTR_7g056420 32.922 243 114 10 9 227 127 344 3.17e-23 98.2
MS.gene054896.t1 MTR_7g056430 32.922 243 114 10 9 227 127 344 3.87e-23 97.8
MS.gene054896.t1 MTR_3g082890 31.955 266 113 12 8 207 134 397 5.77e-23 96.7
MS.gene054896.t1 MTR_3g023630 34.158 202 126 6 15 211 136 335 6.95e-23 95.5
MS.gene054896.t1 MTR_3g040700 32.692 208 120 5 13 211 168 364 1.29e-22 95.5
MS.gene054896.t1 MTR_2g007500 35.484 217 107 9 8 198 123 332 2.24e-22 93.6
MS.gene054896.t1 MTR_5g007410 31.818 242 138 9 5 226 144 378 2.45e-22 94.7
MS.gene054896.t1 MTR_3g107160 32.057 209 127 6 9 206 137 341 3.04e-22 94.0
MS.gene054896.t1 MTR_0009s0080 35.565 239 127 11 3 224 138 366 5.71e-22 93.6
MS.gene054896.t1 MTR_2g008320 33.019 212 119 7 1 196 167 371 9.47e-22 93.2
MS.gene054896.t1 MTR_1g066830 33.482 224 125 8 6 211 126 343 2.85e-21 91.3
MS.gene054896.t1 MTR_7g021990 35.242 227 125 10 17 226 174 395 3.51e-21 91.3
MS.gene054896.t1 MTR_7g060470 34.419 215 98 11 15 196 133 337 4.14e-21 90.9
MS.gene054896.t1 MTR_6g040270 33.040 227 133 11 9 224 130 348 4.63e-21 90.9
MS.gene054896.t1 MTR_1g053025 32.143 224 117 11 9 206 132 346 5.68e-21 90.5
MS.gene054896.t1 MTR_7g021950 34.956 226 127 9 17 226 174 395 6.48e-21 90.9
MS.gene054896.t1 MTR_2g005990 33.333 213 118 7 3 197 134 340 1.21e-20 89.7
MS.gene054896.t1 MTR_1g085120 35.407 209 115 8 14 206 294 498 1.83e-20 89.7
MS.gene054896.t1 MTR_1g085120 35.407 209 115 8 14 206 219 423 1.91e-20 89.7
MS.gene054896.t1 MTR_7g075820 30.622 209 124 7 8 202 144 345 2.50e-20 89.0
MS.gene054896.t1 MTR_2g008310 32.710 214 116 9 1 196 113 316 5.33e-20 87.8
MS.gene054896.t1 MTR_7g056280 31.604 212 117 7 14 206 329 531 7.72e-20 88.2
MS.gene054896.t1 MTR_4g039440 32.877 219 119 7 17 211 152 366 8.33e-20 87.4
MS.gene054896.t1 MTR_6g029350 35.714 154 85 5 56 201 2 149 1.24e-19 84.7
MS.gene054896.t1 MTR_3g071850 29.600 250 146 10 4 231 143 384 1.58e-19 87.4
MS.gene054896.t1 MTR_1g107385 32.258 217 113 10 9 202 169 374 1.59e-19 86.7
MS.gene054896.t1 MTR_2g007360 31.282 195 100 6 34 200 134 322 1.65e-19 86.3
MS.gene054896.t1 MTR_5g073340 34.010 197 109 7 17 195 112 305 2.05e-19 85.5
MS.gene054896.t1 MTR_5g058100 35.567 194 100 8 34 211 156 340 2.08e-19 86.3
MS.gene054896.t1 MTR_4g098590 33.486 218 119 8 8 206 129 339 3.42e-19 85.5
MS.gene054896.t1 MTR_8g085430 31.156 199 77 5 10 206 141 281 3.78e-19 84.7
MS.gene054896.t1 MTR_3g110010 36.548 197 102 8 15 190 228 422 6.25e-19 85.5
MS.gene054896.t1 MTR_3g099830 33.168 202 96 8 25 197 128 319 1.37e-18 83.6
MS.gene054896.t1 MTR_5g063950 31.250 224 112 9 9 206 107 314 1.71e-18 83.2
MS.gene054896.t1 MTR_7g022105 33.480 227 129 8 17 226 175 396 1.82e-18 83.6
MS.gene054896.t1 MTR_7g055943 35.266 207 118 6 14 208 167 369 1.92e-18 83.6
MS.gene054896.t1 MTR_5g039470 33.778 225 120 11 9 211 104 321 2.82e-18 82.4
MS.gene054896.t1 MTR_3g115430 42.593 108 51 3 130 227 1 107 5.97e-18 77.4
MS.gene054896.t1 MTR_2g036470 32.444 225 121 10 5 207 134 349 6.29e-18 82.0
MS.gene054896.t1 MTR_6g022360 31.604 212 134 4 6 206 149 360 9.66e-17 78.6
MS.gene054896.t1 MTR_7g114710 33.014 209 105 9 14 211 140 324 1.34e-16 78.2
MS.gene054896.t1 MTR_3g108560 38.272 162 81 8 17 163 141 298 1.64e-16 77.4
MS.gene054896.t1 MTR_1089s0010 31.507 219 135 8 1 211 122 333 2.07e-16 77.4
MS.gene054896.t1 MTR_7g056417 41.892 148 68 8 9 139 10 156 2.56e-16 73.9
MS.gene054896.t1 MTR_6g022520 34.359 195 109 6 50 229 98 288 4.64e-16 76.3
MS.gene054896.t1 MTR_5g076150 35.377 212 99 9 7 186 22 227 5.59e-16 74.7
MS.gene054896.t1 MTR_7g007370 36.250 160 80 7 35 181 125 275 1.45e-15 75.1
MS.gene054896.t1 MTR_6g011460 34.466 206 122 7 15 211 174 375 1.49e-15 75.5
MS.gene054896.t1 MTR_3g026920 33.333 177 71 8 50 193 192 354 1.76e-15 75.1
MS.gene054896.t1 MTR_3g107940 44.231 104 54 2 124 223 89 192 2.93e-15 73.9
MS.gene054896.t1 MTR_3g467400 31.507 219 116 8 1 211 132 324 2.99e-15 74.3
MS.gene054896.t1 MTR_5g045510 30.837 227 113 9 3 211 129 329 5.15e-15 73.6
MS.gene054896.t1 MTR_3g113785 39.175 97 46 2 124 213 4 94 7.66e-15 68.2
MS.gene054896.t1 MTR_5g039450 28.638 213 125 8 34 226 133 338 1.96e-14 71.6
MS.gene054896.t1 MTR_7g075800 27.444 266 137 15 9 225 144 402 4.07e-14 71.2
MS.gene054896.t1 MTR_2g007090 33.889 180 91 8 31 201 85 245 2.55e-13 68.2
MS.gene054896.t1 MTR_7g033945 70.455 44 13 0 1 44 129 172 4.44e-13 65.9
MS.gene054896.t1 MTR_3g113770 31.210 157 57 4 56 206 218 329 5.23e-13 67.4
MS.gene054896.t1 MTR_3g095630 33.600 125 74 4 81 200 12 132 6.29e-13 65.5
MS.gene054896.t1 MTR_1377s0010 34.615 130 77 4 95 224 9 130 1.32e-12 63.5
MS.gene054896.t1 MTR_5g061680 33.333 195 94 8 1 189 130 294 1.33e-11 63.5
MS.gene054896.t1 MTR_5g033200 32.061 131 80 4 84 211 12 136 1.56e-11 61.6
MS.gene054896.t1 MTR_3g071790 25.946 185 110 7 41 207 19 194 2.22e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 42 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCACATGGAGCTTATATT+TGG 0.177154 7.3:-63903854 MS.gene054896:CDS
AATGATGAAATAGAGTTTAA+AGG 0.196996 7.3:-63904093 MS.gene054896:CDS
AGTTGAGAGGAAATGCATTT+TGG 0.234400 7.3:+63903602 None:intergenic
GCATTACAAATCCAAGAAAA+TGG 0.242682 7.3:+63904021 None:intergenic
AGCTTATATTTGGATCAAAT+TGG 0.287121 7.3:-63903844 MS.gene054896:CDS
GTTTAAAGGTTTATCCAATT+TGG 0.293385 7.3:-63904079 MS.gene054896:CDS
CTTATCAAGTCATTGTCTTA+AGG 0.338646 7.3:-63903179 MS.gene054896:CDS
GAATTACAAACCGTTGATAT+AGG 0.368935 7.3:-63904129 MS.gene054896:CDS
ATAGTAAGATGTTGAAGCTT+AGG 0.380422 7.3:+63903779 None:intergenic
TTGAAGACACTTGAAATTGT+AGG 0.383409 7.3:+63904309 None:intergenic
GATCAAATTGGCGTACGAAT+TGG 0.400531 7.3:-63903832 MS.gene054896:CDS
GGTTTGTAATTCCTCTAGAA+TGG 0.404967 7.3:+63904140 None:intergenic
ACTACTCAAAACTCTCCATT+TGG 0.408827 7.3:-63904214 MS.gene054896:CDS
GAATCGACGAGGAGGACAAT+TGG 0.420221 7.3:-63903643 MS.gene054896:CDS
AATGTCGGCTCTGACCAAAT+TGG 0.426549 7.3:+63904065 None:intergenic
TCAACATCTTACTATTGATC+AGG 0.427088 7.3:-63903771 MS.gene054896:intron
GCTCCATGTGAGTTAAGTTA+TGG 0.448971 7.3:+63903864 None:intergenic
TAGTAAGATGTTGAAGCTTA+GGG 0.453146 7.3:+63903780 None:intergenic
GTTTGTAATTCCTCTAGAAT+GGG 0.466857 7.3:+63904141 None:intergenic
TGCTCACTTACATCTTATAC+AGG 0.466930 7.3:-63903572 MS.gene054896:CDS
GAAACAAAACGTGGTCCAAA+TGG 0.469111 7.3:+63904199 None:intergenic
TCAAAATTTAAGCCCTTCGA+TGG 0.500052 7.3:+63903121 None:intergenic
TTTAAGCCCTTCGATGGTCG+TGG 0.514540 7.3:+63903127 None:intergenic
CAAGTGTCTTCAATTGCGGC+AGG 0.521075 7.3:-63904299 MS.gene054896:CDS
AAAGATTCTACGAGTGAGAC+TGG 0.532233 7.3:-63903998 MS.gene054896:intron
CACATAACCACGACCATCGA+AGG 0.550993 7.3:-63903134 MS.gene054896:CDS
CGAACCAGGGTTAGAAATGT+CGG 0.575676 7.3:+63904050 None:intergenic
AGAAGGATGTCCCATTCTAG+AGG 0.576824 7.3:-63904151 MS.gene054896:CDS
ATTTCAAGTGTCTTCAATTG+CGG 0.587477 7.3:-63904303 MS.gene054896:CDS
GAAAATGGAATATTCGAACC+AGG 0.591095 7.3:+63904036 None:intergenic
CGACGAGGAGGACAATTGGA+AGG 0.594578 7.3:-63903639 MS.gene054896:CDS
TTTCCATAACTTAACTCACA+TGG 0.606554 7.3:-63903867 MS.gene054896:CDS
AGAGCCGACATTTCTAACCC+TGG 0.618741 7.3:-63904054 MS.gene054896:CDS
ATTGGCGTACGAATTGGAAG+TGG 0.621973 7.3:-63903826 MS.gene054896:CDS
TGAGCATGTTCTAAGTTGAG+AGG 0.626444 7.3:+63903589 None:intergenic
ACTTACATCTTATACAGGCA+CGG 0.629355 7.3:-63903567 MS.gene054896:CDS
AAAATGGAATATTCGAACCA+GGG 0.643213 7.3:+63904037 None:intergenic
ACATAACCACGACCATCGAA+GGG 0.645647 7.3:-63903133 MS.gene054896:CDS
GCGTACGAATTGGAAGTGGT+CGG 0.670560 7.3:-63903822 MS.gene054896:CDS
TGGACATGGAATCGACGAGG+AGG 0.682152 7.3:-63903651 MS.gene054896:CDS
CTCCTCGCAGAAACAAAACG+TGG 0.710889 7.3:+63904190 None:intergenic
TCATGGACATGGAATCGACG+AGG 0.751447 7.3:-63903654 MS.gene054896:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTAGAAATTAGAATATA+CGG + chr7.3:63904092-63904111 None:intergenic 15.0%
!! TAGTTAAAAAATATCATCAT+TGG + chr7.3:63903715-63903734 None:intergenic 15.0%
!! AAGATAATTTCAATAGCATT+TGG + chr7.3:63904005-63904024 None:intergenic 20.0%
!! AATGATGAAATAGAGTTTAA+AGG - chr7.3:63903356-63903375 MS.gene054896:intron 20.0%
!!! GATTTTAATAAGCTTTTAGA+AGG - chr7.3:63903281-63903300 MS.gene054896:intron 20.0%
!!! TCTTTTCTAATTTTTGTATG+TGG - chr7.3:63903760-63903779 MS.gene054896:intron 20.0%
! AGCTTATATTTGGATCAAAT+TGG - chr7.3:63903605-63903624 MS.gene054896:CDS 25.0%
! CAACAAAAATCCTATATCAA+CGG + chr7.3:63903333-63903352 None:intergenic 25.0%
! GTTTAAAGGTTTATCCAATT+TGG - chr7.3:63903370-63903389 MS.gene054896:intron 25.0%
!! TACTTTCATTTTATTGACGA+AGG - chr7.3:63904052-63904071 MS.gene054896:CDS 25.0%
!!! ATGCATTTTGGAACAATTTT+TGG + chr7.3:63903838-63903857 None:intergenic 25.0%
AAAATGGAATATTCGAACCA+GGG + chr7.3:63903415-63903434 None:intergenic 30.0%
AAATTATCTTCATGTCCAAG+GGG - chr7.3:63904015-63904034 MS.gene054896:CDS 30.0%
AAGCAAAGTTCACAAAGATT+TGG + chr7.3:63904211-63904230 None:intergenic 30.0%
ATAGTAAGATGTTGAAGCTT+AGG + chr7.3:63903673-63903692 None:intergenic 30.0%
CTAGATTTGCAACAATAGTA+TGG - chr7.3:63904105-63904124 MS.gene054896:CDS 30.0%
CTTATCAAGTCATTGTCTTA+AGG - chr7.3:63904270-63904289 MS.gene054896:CDS 30.0%
GAAATTATCTTCATGTCCAA+GGG - chr7.3:63904014-63904033 MS.gene054896:CDS 30.0%
GAATTACAAACCGTTGATAT+AGG - chr7.3:63903320-63903339 MS.gene054896:intron 30.0%
GCATTACAAATCCAAGAAAA+TGG + chr7.3:63903431-63903450 None:intergenic 30.0%
TACATGAACTCAGTTTCATT+AGG - chr7.3:63904139-63904158 MS.gene054896:CDS 30.0%
TAGTAAGATGTTGAAGCTTA+GGG + chr7.3:63903672-63903691 None:intergenic 30.0%
TATATTTATATCCACTAGCG+AGG + chr7.3:63903977-63903996 None:intergenic 30.0%
TCAACATCTTACTATTGATC+AGG - chr7.3:63903678-63903697 MS.gene054896:intron 30.0%
TGAAATTATCTTCATGTCCA+AGG - chr7.3:63904013-63904032 MS.gene054896:CDS 30.0%
TTGAAGACACTTGAAATTGT+AGG + chr7.3:63903143-63903162 None:intergenic 30.0%
TTTCCATAACTTAACTCACA+TGG - chr7.3:63903582-63903601 MS.gene054896:CDS 30.0%
! ATTTCAAGTGTCTTCAATTG+CGG - chr7.3:63903146-63903165 MS.gene054896:CDS 30.0%
! CATTTTATTGACGAAGGTTA+GGG - chr7.3:63904058-63904077 MS.gene054896:CDS 30.0%
! GTTCGAATATTCCATTTTCT+TGG - chr7.3:63903417-63903436 MS.gene054896:intron 30.0%
! TCATTTTATTGACGAAGGTT+AGG - chr7.3:63904057-63904076 MS.gene054896:CDS 30.0%
! TTTTAATAGCTTCATGGACA+TGG - chr7.3:63903784-63903803 MS.gene054896:CDS 30.0%
!! ATGTTTGTCTTTTTAACTGC+AGG - chr7.3:63903537-63903556 MS.gene054896:intron 30.0%
!! GTTTGTAATTCCTCTAGAAT+GGG + chr7.3:63903311-63903330 None:intergenic 30.0%
!! TGTGGATTTTAATAGCTTCA+TGG - chr7.3:63903778-63903797 MS.gene054896:CDS 30.0%
ACTACTCAAAACTCTCCATT+TGG - chr7.3:63903235-63903254 MS.gene054896:intron 35.0%
ACTCACATGGAGCTTATATT+TGG - chr7.3:63903595-63903614 MS.gene054896:CDS 35.0%
ACTTACATCTTATACAGGCA+CGG - chr7.3:63903882-63903901 MS.gene054896:CDS 35.0%
CAAAGTTCACAAAGATTTGG+AGG + chr7.3:63904208-63904227 None:intergenic 35.0%
GAAAATGGAATATTCGAACC+AGG + chr7.3:63903416-63903435 None:intergenic 35.0%
TGCTCACTTACATCTTATAC+AGG - chr7.3:63903877-63903896 MS.gene054896:CDS 35.0%
! AGTTGAGAGGAAATGCATTT+TGG + chr7.3:63903850-63903869 None:intergenic 35.0%
! GGTTTGTAATTCCTCTAGAA+TGG + chr7.3:63903312-63903331 None:intergenic 35.0%
!!! AAATGGAGAGTTTTGAGTAG+TGG + chr7.3:63903236-63903255 None:intergenic 35.0%
AAAGATTCTACGAGTGAGAC+TGG - chr7.3:63903451-63903470 MS.gene054896:intron 40.0%
GAAACAAAACGTGGTCCAAA+TGG + chr7.3:63903253-63903272 None:intergenic 40.0%
GATCAAATTGGCGTACGAAT+TGG - chr7.3:63903617-63903636 MS.gene054896:CDS 40.0%
GCTCCATGTGAGTTAAGTTA+TGG + chr7.3:63903588-63903607 None:intergenic 40.0%
! TGAGCATGTTCTAAGTTGAG+AGG + chr7.3:63903863-63903882 None:intergenic 40.0%
ACATAACCACGACCATCGAA+GGG - chr7.3:63904316-63904335 MS.gene054896:CDS 45.0%
AGAAGGATGTCCCATTCTAG+AGG - chr7.3:63903298-63903317 MS.gene054896:intron 45.0%
ATACACGTAGTAGAACCCCT+TGG + chr7.3:63904033-63904052 None:intergenic 45.0%
ATTGGCGTACGAATTGGAAG+TGG - chr7.3:63903623-63903642 MS.gene054896:CDS 45.0%
CGAACCAGGGTTAGAAATGT+CGG + chr7.3:63903402-63903421 None:intergenic 45.0%
TAGCGAGGCAGTAATTGACA+TGG + chr7.3:63903962-63903981 None:intergenic 45.0%
!! AATGTCGGCTCTGACCAAAT+TGG + chr7.3:63903387-63903406 None:intergenic 45.0%
AGAGCCGACATTTCTAACCC+TGG - chr7.3:63903395-63903414 MS.gene054896:intron 50.0%
CAAGTGTCTTCAATTGCGGC+AGG - chr7.3:63903150-63903169 MS.gene054896:CDS 50.0%
CACATAACCACGACCATCGA+AGG - chr7.3:63904315-63904334 MS.gene054896:CDS 50.0%
CTCCTCGCAGAAACAAAACG+TGG + chr7.3:63903262-63903281 None:intergenic 50.0%
GAATCGACGAGGAGGACAAT+TGG - chr7.3:63903806-63903825 MS.gene054896:CDS 50.0%
GCGTACGAATTGGAAGTGGT+CGG - chr7.3:63903627-63903646 MS.gene054896:CDS 50.0%
GTCAATTACTGCCTCGCTAG+TGG - chr7.3:63903963-63903982 MS.gene054896:intron 50.0%
TCATGGACATGGAATCGACG+AGG - chr7.3:63903795-63903814 MS.gene054896:CDS 50.0%
!!! GACCACGTTTTGTTTCTGCG+AGG - chr7.3:63903257-63903276 MS.gene054896:intron 50.0%
CGACGAGGAGGACAATTGGA+AGG - chr7.3:63903810-63903829 MS.gene054896:CDS 55.0%
TGGACATGGAATCGACGAGG+AGG - chr7.3:63903798-63903817 MS.gene054896:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 63903128 63904343 63903128 ID=MS.gene054896
chr7.3 mRNA 63903128 63904343 63903128 ID=MS.gene054896.t1;Parent=MS.gene054896
chr7.3 exon 63903999 63904343 63903999 ID=MS.gene054896.t1.exon1;Parent=MS.gene054896.t1
chr7.3 CDS 63903999 63904343 63903999 ID=cds.MS.gene054896.t1;Parent=MS.gene054896.t1
chr7.3 exon 63903772 63903912 63903772 ID=MS.gene054896.t1.exon2;Parent=MS.gene054896.t1
chr7.3 CDS 63903772 63903912 63903772 ID=cds.MS.gene054896.t1;Parent=MS.gene054896.t1
chr7.3 exon 63903545 63903678 63903545 ID=MS.gene054896.t1.exon3;Parent=MS.gene054896.t1
chr7.3 CDS 63903545 63903678 63903545 ID=cds.MS.gene054896.t1;Parent=MS.gene054896.t1
chr7.3 exon 63903128 63903206 63903128 ID=MS.gene054896.t1.exon4;Parent=MS.gene054896.t1
chr7.3 CDS 63903128 63903206 63903128 ID=cds.MS.gene054896.t1;Parent=MS.gene054896.t1
Gene Sequence

>MS.gene054896

ATGAGATTACGTCCTACAATTTCAAGTGTCTTCAATTGCGGCAGGAATCTTGTGTTTCTTAAATTGAAGTTTGTAGTAGTGACTGTTGTTGCTCAATTTGATTTTCCACTACTCAAAACTCTCCATTTGGACCACGTTTTGTTTCTGCGAGGAGATTTTAATAAGCTTTTAGAAGGATGTCCCATTCTAGAGGAATTACAAACCGTTGATATAGGATTTTTGTTGTCAAATGATGAAATAGAGTTTAAAGGTTTATCCAATTTGGTCAGAGCCGACATTTCTAACCCTGGTTCGAATATTCCATTTTCTTGGATTTGTAATGCAAAGATTCTACGAGTGAGACTGGTATGAGTAACTCACTTCTCACTAACTAATGTTACAATAAGTTGAACTTGATTTCTAATAGTTGATGTTTGTCTTTTTAACTGCAGGATGAAGAGCGACAAGTTCACACTTTCCATAACTTAACTCACATGGAGCTTATATTTGGATCAAATTGGCGTACGAATTGGAAGTGGTCGGTAGAATTGCTTGAACATTGCCCTAAGCTTCAACATCTTACTATTGATCAGGTCTTACTTATGCCAATGATGATATTTTTTAACTATAGTTTTAACTATTTTTTAGACATTTCTTTTCTAATTTTTGTATGTGGATTTTAATAGCTTCATGGACATGGAATCGACGAGGAGGACAATTGGAAGGAACCAAAAATTGTTCCAAAATGCATTTCCTCTCAACTTAGAACATGCTCACTTACATCTTATACAGGCACGGAGTGTGAGCTTCAGTTTGCAAAGTATATTATGAAGAATGCAAAAGAAATGTGCACCATGTCAATTACTGCCTCGCTAGTGGATATAAATATAAAGTACCAAATGCTATTGAAATTATCTTCATGTCCAAGGGGTTCTACTACGTGTATACTTTCATTTTATTGACGAAGGTTAGGGCATAGTTGCCGTATATTCTAATTTCTAGATTTGCAACAATAGTATGGATGTTTTGAAATACATGAACTCAGTTTCATTAGGTCTATATGTCGTATATTTTCAAATATATATTTTGATACTTGTTCCTCCAAATCTTTGTGAACTTTGCTTTCTTATTGATAATTGTTTATGCTTTGAATCATAGTGATGCTTATCAAGTCATTGTCTTAAGGTTATTCAAAAATATTGATATGACACATAACCACGACCATCGAAGGGCTTAA
Protein sequence

>MS.gene054896.t1

MRLRPTISSVFNCGRNLVFLKLKFVVVTVVAQFDFPLLKTLHLDHVLFLRGDFNKLLEGCPILEELQTVDIGFLLSNDEIEFKGLSNLVRADISNPGSNIPFSWICNAKILRVRLDEERQVHTFHNLTHMELIFGSNWRTNWKWSVELLEHCPKLQHLTIDQLHGHGIDEEDNWKEPKIVPKCISSQLRTCSLTSYTGTECELQFANDAYQVIVLRLFKNIDMTHNHDHRRA