AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050535

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050535.t1 MTR_7g115280 93.468 444 10 2 1 425 1 444 0.0 831
MS.gene050535.t1 MTR_5g012030 41.905 105 58 1 319 420 2 106 8.24e-17 84.0
MS.gene050535.t1 MTR_5g012030 34.545 110 69 1 319 425 392 501 1.58e-14 76.6
MS.gene050535.t1 MTR_4g116160 34.615 182 114 3 73 249 70 251 1.66e-15 79.7
MS.gene050535.t1 MTR_4g116160 34.615 182 114 3 73 249 70 251 1.01e-14 77.4
MS.gene050535.t1 MTR_3g107720 29.557 203 137 4 113 312 543 742 1.51e-13 73.9
MS.gene050535.t1 MTR_2g006870 32.704 159 100 3 98 255 533 685 4.25e-13 72.8
MS.gene050535.t1 MTR_4g021880 26.518 313 179 9 18 309 101 383 5.96e-13 71.2
MS.gene050535.t1 MTR_1g041435 34.862 109 68 1 323 428 15 123 6.52e-13 70.5
MS.gene050535.t1 MTR_4g021880 24.933 373 221 12 18 365 101 439 7.71e-13 71.2
MS.gene050535.t1 MTR_5g077770 28.634 227 149 5 31 255 522 737 8.11e-13 71.6
MS.gene050535.t1 MTR_1g112830 28.740 254 156 7 13 244 96 346 1.49e-12 70.5
MS.gene050535.t1 MTR_5g043640 31.737 167 108 4 76 236 56 222 2.03e-12 67.8
MS.gene050535.t1 MTR_5g043640 30.573 157 82 4 20 175 96 226 8.43e-11 62.8
MS.gene050535.t1 MTR_2g096760 26.910 301 150 8 66 308 2 290 2.25e-12 69.7
MS.gene050535.t1 MTR_5g009930 33.058 121 72 2 319 436 2 116 3.60e-11 64.7
MS.gene050535.t1 MTR_5g022050 25.837 209 146 4 48 247 194 402 9.08e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050535.t1 AT3G04710 64.414 444 132 4 1 425 225 661 0.0 555
MS.gene050535.t1 AT3G04710 64.414 444 132 4 1 425 1 437 0.0 553
MS.gene050535.t1 AT3G04710 64.414 444 131 5 1 425 1 436 0.0 548
MS.gene050535.t1 AT4G12400 36.000 175 95 4 319 476 2 176 4.64e-20 94.0
MS.gene050535.t1 AT4G12400 34.545 110 69 1 319 425 369 478 2.67e-15 79.3
MS.gene050535.t1 AT4G12400 36.000 175 95 4 319 476 2 176 5.81e-20 93.6
MS.gene050535.t1 AT4G12400 34.545 110 69 1 319 425 369 478 3.66e-15 78.6
MS.gene050535.t1 AT1G62740 40.952 105 59 1 319 420 2 106 1.65e-16 83.2
MS.gene050535.t1 AT1G62740 34.259 108 68 1 321 425 384 491 1.18e-14 77.4
MS.gene050535.t1 AT1G04190 37.624 101 60 1 323 420 19 119 9.75e-14 72.8
MS.gene050535.t1 AT1G12270 40.952 105 59 1 319 420 2 106 1.05e-13 74.3
MS.gene050535.t1 AT1G12270 35.185 108 67 1 321 425 385 492 1.05e-13 74.3
MS.gene050535.t1 AT5G37500 33.146 178 115 3 80 255 538 713 1.44e-13 74.3
MS.gene050535.t1 AT5G20350 33.696 184 113 4 73 249 65 246 2.04e-13 73.6
MS.gene050535.t1 AT4G32500 28.436 211 141 4 109 316 545 748 3.10e-13 73.2
MS.gene050535.t1 AT2G25600 28.302 212 141 5 109 317 547 750 8.18e-12 68.6
MS.gene050535.t1 AT4G35230 30.000 160 97 4 252 397 324 482 4.43e-11 65.9

Find 126 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACCATTGCTAGCAATTT+AGG 0.149520 7.4:+2371299 MS.gene050535:CDS
AACTTGATGTTATTCCTTCT+TGG 0.202708 7.4:+2373742 MS.gene050535:CDS
ATCTGTTGCAGCTGATTCTT+TGG 0.215917 7.4:+2372544 MS.gene050535:CDS
TTTAATTGCTTCCACTGTTT+TGG 0.221129 7.4:-2371087 None:intergenic
ATTGGTCCAAAGCTTGTTAT+AGG 0.291093 7.4:+2375606 MS.gene050535:CDS
CTTCCAGCTGCAACCTGTAT+TGG 0.297839 7.4:-2373675 None:intergenic
TGACAACTACGGTTTATCTT+TGG 0.308207 7.4:-2376170 None:intergenic
TTCGGGAACACCGTTGGTTT+GGG 0.325527 7.4:+2371738 MS.gene050535:CDS
TTTAGTCTCTTATCTTTGTA+AGG 0.326413 7.4:-2376206 None:intergenic
ATTCGGGAACACCGTTGGTT+TGG 0.327829 7.4:+2371737 MS.gene050535:CDS
AGAAGGAATAACATCAAGTT+TGG 0.328022 7.4:-2373739 None:intergenic
ACACCGTTGGTTTGGGCTGC+TGG 0.331465 7.4:+2371745 MS.gene050535:CDS
TTGCACATTGCAGCTGATAA+TGG 0.333370 7.4:+2373310 MS.gene050535:CDS
TTGCATCATTCTGCTGGAAT+AGG 0.335655 7.4:+2371332 MS.gene050535:CDS
ATTCCTTCTTGGACTATTGA+TGG 0.346294 7.4:+2373753 MS.gene050535:CDS
TTCAAGGGTCGTAGAAATAA+AGG 0.349240 7.4:-2376632 None:intergenic
TCTCATTCATGCTGCACGTC+AGG 0.349718 7.4:+2371232 MS.gene050535:CDS
TTATTCCATAAGACATTTGC+CGG 0.349921 7.4:+2376506 MS.gene050535:intron
TACTTGAGGCACTCGGTCAC+TGG 0.352056 7.4:-2376568 None:intergenic
GATCAGTTCCTGCTTTCAAC+AGG 0.361386 7.4:-2373354 None:intergenic
TCAAGACTTTACTTGTGTAT+AGG 0.364581 7.4:-2375230 None:intergenic
CCCGAATCACTTTCTAAGTC+AGG 0.367297 7.4:-2371721 None:intergenic
TTTACAAGCTCCTTGCTCTC+AGG 0.376147 7.4:-2375794 None:intergenic
TCCTGACTTAGAAAGTGATT+CGG 0.397766 7.4:+2371720 MS.gene050535:CDS
CCATCATCAGTTTCAGCATT+GGG 0.414646 7.4:-2372503 None:intergenic
GACCCATCCAACTTATTAAG+AGG 0.425227 7.4:-2376666 None:intergenic
CCTGACTTAGAAAGTGATTC+GGG 0.427650 7.4:+2371721 MS.gene050535:CDS
CTTTAAGAGATCGAGATTGC+CGG 0.435481 7.4:-2370942 None:intergenic
AGGAGCTTGTAAATGCGTTC+AGG 0.442269 7.4:+2375804 MS.gene050535:CDS
GCCTTCCCTATAACAAGCTT+TGG 0.445915 7.4:-2375612 None:intergenic
TGCAAGTGCGTCGGAAGCAT+CGG 0.447294 7.4:-2370879 None:intergenic
GAAGCTGGAAGAAAATTTCA+TGG 0.454075 7.4:+2376142 MS.gene050535:CDS
ACGGCTTTGCATCATTCTGC+TGG 0.454550 7.4:+2371326 MS.gene050535:CDS
ATCAAAATCAAGAGGGGATG+AGG 0.458977 7.4:+2375171 MS.gene050535:CDS
ATGCTTAGAGCTGTTAATAC+AGG 0.462858 7.4:+2372568 MS.gene050535:CDS
TTGGTCCAAAGCTTGTTATA+GGG 0.462903 7.4:+2375607 MS.gene050535:CDS
AGAGGGGTATGTATATTTCA+AGG 0.465696 7.4:-2376648 None:intergenic
TAACAAGCTTTGGACCAATC+TGG 0.465796 7.4:-2375602 None:intergenic
TTCCTTCTTGGACTATTGAT+GGG 0.466672 7.4:+2373754 MS.gene050535:CDS
GAAGCTAGGTCAAGCTGAGC+AGG 0.467307 7.4:+2375544 MS.gene050535:CDS
TAAATGTTAAAGAAAATAAC+CGG 0.467892 7.4:+2374512 MS.gene050535:CDS
TACAGGGAAGCTGTTGAAGC+TGG 0.468882 7.4:+2376127 MS.gene050535:intron
TAAGTCAGGATTAACTCCTC+TGG 0.476327 7.4:-2371707 None:intergenic
CTTCCGACGCACTTGCAGTT+AGG 0.476513 7.4:+2370885 MS.gene050535:CDS
GCTAAGTATCTTATTGATCA+TGG 0.477834 7.4:+2371269 MS.gene050535:CDS
ACCCCTCTTAATAAGTTGGA+TGG 0.487618 7.4:+2376663 MS.gene050535:CDS
GCAAGTGCGTCGGAAGCATC+GGG 0.488101 7.4:-2370878 None:intergenic
ACATACCCCTCTTAATAAGT+TGG 0.492641 7.4:+2376659 MS.gene050535:CDS
GCCATCATCAGTTTCAGCAT+TGG 0.492771 7.4:-2372504 None:intergenic
CTCACCTCGTCAGAGACATT+AGG 0.497830 7.4:-2373376 None:intergenic
TGAATGCAATGTACCATCGC+TGG 0.498194 7.4:-2375501 None:intergenic
ATAAATTCCCTGTTGAAAGC+AGG 0.500352 7.4:+2373346 MS.gene050535:CDS
TTACAAGCTCCTTGCTCTCA+GGG 0.500721 7.4:-2375793 None:intergenic
TTGCATGTGCTGGTTGGCAT+TGG 0.501170 7.4:-2376041 None:intergenic
AACATCAAGTTTGGATGTCA+CGG 0.505613 7.4:-2373730 None:intergenic
TTAGTCTCTTATCTTTGTAA+GGG 0.516825 7.4:-2376205 None:intergenic
TAAAAGGAATGACTATCATA+CGG 0.521638 7.4:+2375198 MS.gene050535:CDS
AATACAGGTTGCAGCTGGAA+GGG 0.537141 7.4:+2373677 MS.gene050535:CDS
GGATGGTGTTAAGCCAATAC+AGG 0.538177 7.4:+2373662 MS.gene050535:intron
CAATACAGGTTGCAGCTGGA+AGG 0.538296 7.4:+2373676 MS.gene050535:CDS
GAATGCAATGTACCATCGCT+GGG 0.539778 7.4:-2375500 None:intergenic
AAGCCAATACAGGTTGCAGC+TGG 0.541821 7.4:+2373672 MS.gene050535:CDS
GGTCGTAGAAATAAAGGCTC+TGG 0.542408 7.4:-2376626 None:intergenic
ACATCAAGTTTGGATGTCAC+GGG 0.545819 7.4:-2373729 None:intergenic
AGAAATAAAGGCTCTGGTGG+GGG 0.548276 7.4:-2376620 None:intergenic
GTAGAAATAAAGGCTCTGGT+GGG 0.548953 7.4:-2376622 None:intergenic
CTCATTCATGCTGCACGTCA+GGG 0.549715 7.4:+2371233 MS.gene050535:CDS
GATTAAAGACTTGCATGTGC+TGG 0.550204 7.4:-2376051 None:intergenic
AACACTTGACCCTGAGAGCA+AGG 0.550632 7.4:+2375784 MS.gene050535:CDS
ATACAGGTTGCAGCTGGAAG+GGG 0.552229 7.4:+2373678 MS.gene050535:CDS
ACTTGAGGCACTCGGTCACT+GGG 0.555469 7.4:-2376567 None:intergenic
TGCTAGCAATTTAGGAACCA+CGG 0.556932 7.4:+2371307 MS.gene050535:CDS
CGTAGAAATAAAGGCTCTGG+TGG 0.561377 7.4:-2376623 None:intergenic
AGTCTATGTTGGATGAAGCT+AGG 0.562469 7.4:+2375530 MS.gene050535:CDS
TTCCTCAACGCTGCTCGTAC+CGG 0.562981 7.4:+2370923 MS.gene050535:CDS
ATTCAAATAGAAGTCTATGT+TGG 0.563771 7.4:+2375519 MS.gene050535:CDS
ACCCATCCAACTTATTAAGA+GGG 0.564940 7.4:-2376665 None:intergenic
GAGGGGTATGTATATTTCAA+GGG 0.568156 7.4:-2376647 None:intergenic
AAAGTAAATGTTAGTGCTGG+TGG 0.569289 7.4:+2373277 MS.gene050535:CDS
CTTGAGCATTTGCTGTCCAG+AGG 0.572302 7.4:+2371691 MS.gene050535:CDS
TCCAAAGCTTGTTATAGGGA+AGG 0.574646 7.4:+2375611 MS.gene050535:CDS
CTGCAACAGATGAAATGAGT+GGG 0.576458 7.4:-2372532 None:intergenic
CCCCTCTTAATAAGTTGGAT+GGG 0.576779 7.4:+2376664 MS.gene050535:CDS
TCTTAATAAGTTGGATGGGT+CGG 0.580201 7.4:+2376668 MS.gene050535:CDS
CCTAAATTGCTAGCAATGGT+AGG 0.580362 7.4:-2371299 None:intergenic
TCACAAGATCTTCATACTTG+AGG 0.585113 7.4:-2376582 None:intergenic
ATCCCATCAATAGTCCAAGA+AGG 0.585457 7.4:-2373756 None:intergenic
CAGCAGAATCAAAATCAAGA+GGG 0.593887 7.4:+2375164 MS.gene050535:CDS
ATCAGTTCCTGCTTTCAACA+GGG 0.598606 7.4:-2373353 None:intergenic
GTGTGCGTACATGTCGGTTG+CGG 0.604226 7.4:-2376545 None:intergenic
CCCAATGCTGAAACTGATGA+TGG 0.604551 7.4:+2372503 MS.gene050535:CDS
TTATCAGCTGCAATGTGCAA+AGG 0.606996 7.4:-2373307 None:intergenic
GTAGAGCATTAAGACCAGAT+TGG 0.608756 7.4:+2375588 MS.gene050535:CDS
TAGAAATAAAGGCTCTGGTG+GGG 0.609706 7.4:-2376621 None:intergenic
GGTTCCTAAATTGCTAGCAA+TGG 0.609817 7.4:-2371303 None:intergenic
ATCTTCATACTTGAGGCACT+CGG 0.611271 7.4:-2376575 None:intergenic
CTGCCTAACTGCAAGTGCGT+CGG 0.612225 7.4:-2370888 None:intergenic
AAGTGATTCGGGAACACCGT+TGG 0.612822 7.4:+2371732 MS.gene050535:CDS
TGCCGGTACGAGCAGCGTTG+AGG 0.612947 7.4:-2370925 None:intergenic
AAACAGCAGCATCCACAGAC+CGG 0.613311 7.4:-2374531 None:intergenic
TAAAGAAAATAACCGGTCTG+TGG 0.616124 7.4:+2374519 MS.gene050535:CDS
ATCAATAAGATACTTAGCAG+TGG 0.617709 7.4:-2371264 None:intergenic
GCAGCAGAATCAAAATCAAG+AGG 0.620760 7.4:+2375163 MS.gene050535:CDS
AAAGACTTGCATGTGCTGGT+TGG 0.623428 7.4:-2376047 None:intergenic
GCTAAAGTAAATGTTAGTGC+TGG 0.624109 7.4:+2373274 MS.gene050535:CDS
TGACCAGCAGCCCAAACCAA+CGG 0.624815 7.4:-2371748 None:intergenic
ACATGCCAGCAACAAACGCA+AGG 0.626173 7.4:-2375639 None:intergenic
CAAAGATTTATCCAAAACAG+TGG 0.629444 7.4:+2371076 MS.gene050535:CDS
GCAGGCTTTAGCTGATGCAA+AGG 0.635071 7.4:+2375562 MS.gene050535:CDS
ATTGATTTGAATCCCAGCGA+TGG 0.637054 7.4:+2375488 MS.gene050535:CDS
ATTAAAGATGCAAACAAGCG+TGG 0.639246 7.4:+2371104 MS.gene050535:CDS
CACTGGGTGTGCGTACATGT+CGG 0.642594 7.4:-2376551 None:intergenic
GCAGCTGGAAGGGGAAATCG+TGG 0.646088 7.4:+2373687 MS.gene050535:CDS
CCCATCCAACTTATTAAGAG+GGG 0.651019 7.4:-2376664 None:intergenic
AGCAGAATGATGCAAAGCCG+TGG 0.654699 7.4:-2371324 None:intergenic
TTTGCCGGTATGATACGATA+CGG 0.655796 7.4:+2376521 MS.gene050535:CDS
GCTGCAACAGATGAAATGAG+TGG 0.659045 7.4:-2372533 None:intergenic
AGCAGAATCAAAATCAAGAG+GGG 0.665063 7.4:+2375165 MS.gene050535:CDS
CGGACCGTATCGTATCATAC+CGG 0.672220 7.4:-2376525 None:intergenic
ATTTGCGGAACAATTAGACG+AGG 0.679877 7.4:+2371052 MS.gene050535:CDS
TTTGCGGAACAATTAGACGA+GGG 0.690385 7.4:+2371053 MS.gene050535:CDS
GTCACTGTTCTATTAAAACA+TGG 0.691599 7.4:+2371787 MS.gene050535:CDS
TGCAACAGATGAAATGAGTG+GGG 0.693780 7.4:-2372531 None:intergenic
CATCAAGTTTGGATGTCACG+GGG 0.695475 7.4:-2373728 None:intergenic
TGATCCTAATGTCTCTGACG+AGG 0.709103 7.4:+2373372 MS.gene050535:CDS
TCGAGAGCAAAATATCCCTG+AGG 0.758992 7.4:+2374555 MS.gene050535:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTATACTAATTAGAA+AGG + chr7.4:2376323-2376342 MS.gene050535:intron 10.0%
!! AAAGAAAATACATATCAATA+AGG - chr7.4:2376258-2376277 None:intergenic 15.0%
!! AATATACTATGTTTATGATT+TGG + chr7.4:2372627-2372646 MS.gene050535:intron 15.0%
!! TAAATGTTAAAGAAAATAAC+CGG + chr7.4:2374512-2374531 MS.gene050535:CDS 15.0%
!!! AATTTAGTTCCAAATATTAA+TGG - chr7.4:2373622-2373641 None:intergenic 15.0%
!!! TAAATTTTCTACAATTTTCA+TGG - chr7.4:2372720-2372739 None:intergenic 15.0%
!! AAACATCTATCTAATGAAAA+AGG + chr7.4:2373036-2373055 MS.gene050535:intron 20.0%
!! AACATCTATCTAATGAAAAA+GGG + chr7.4:2373037-2373056 MS.gene050535:intron 20.0%
!! AAGTAACACAAATTAAGAAA+TGG - chr7.4:2371833-2371852 None:intergenic 20.0%
!! AATCAACTAACTAATTGTTA+TGG - chr7.4:2372942-2372961 None:intergenic 20.0%
!! AATTGTAGAAAATTTATCAG+TGG + chr7.4:2372724-2372743 MS.gene050535:intron 20.0%
!! ACATAGTATATTGTTTAGTA+AGG - chr7.4:2372619-2372638 None:intergenic 20.0%
!! ACTAAATTGAAAACTTAACA+CGG - chr7.4:2372399-2372418 None:intergenic 20.0%
!! AGAATACAAGAAAATACTAT+TGG - chr7.4:2373506-2373525 None:intergenic 20.0%
!! ATACTCTTAAAGTTCAAAAA+GGG + chr7.4:2374212-2374231 MS.gene050535:intron 20.0%
!! ATCTTGAAATATTATAGCAT+TGG + chr7.4:2376362-2376381 MS.gene050535:intron 20.0%
!! ATTGTTATGGATATATAACA+TGG - chr7.4:2372929-2372948 None:intergenic 20.0%
!! CATAGTATATTGTTTAGTAA+GGG - chr7.4:2372618-2372637 None:intergenic 20.0%
!! GAATACAAGAAAATACTATT+GGG - chr7.4:2373505-2373524 None:intergenic 20.0%
!! GAATTCTATATCTATTTGAT+TGG + chr7.4:2371918-2371937 MS.gene050535:intron 20.0%
!! GTACAGCTAATATATTTAAT+AGG - chr7.4:2374589-2374608 None:intergenic 20.0%
!! TACATATCAATAAGGTTAAA+AGG - chr7.4:2376250-2376269 None:intergenic 20.0%
!! TACTAATATGCTTATTACAT+GGG + chr7.4:2372341-2372360 MS.gene050535:intron 20.0%
!! TATACTCTTAAAGTTCAAAA+AGG + chr7.4:2374211-2374230 MS.gene050535:intron 20.0%
!!! AACTAAATTTTATGTCTGTT+TGG + chr7.4:2373633-2373652 MS.gene050535:intron 20.0%
!!! ACTAGCAGTTTAATTTTTAA+TGG - chr7.4:2372875-2372894 None:intergenic 20.0%
!!! ATTTTGCAATAGTTAATGTA+TGG + chr7.4:2375868-2375887 MS.gene050535:intron 20.0%
!!! CTTTGTATTTTAAGATAATG+CGG - chr7.4:2373944-2373963 None:intergenic 20.0%
!!! TATTGTTTTCATAGAATTTG+CGG + chr7.4:2371037-2371056 MS.gene050535:intron 20.0%
!!! TTTAAACTTTTAAGTGATTG+TGG + chr7.4:2374327-2374346 MS.gene050535:intron 20.0%
! AAAAAGAGATAGTTTCTGTT+TGG - chr7.4:2371563-2371582 None:intergenic 25.0%
! AAGAATAAGCAATTGATCAT+GGG - chr7.4:2375025-2375044 None:intergenic 25.0%
! ACATTCATCAACAAAATACA+AGG - chr7.4:2373117-2373136 None:intergenic 25.0%
! AGAAAATTTATCAGTGGAAA+TGG + chr7.4:2372730-2372749 MS.gene050535:intron 25.0%
! ATTCAAATAGAAGTCTATGT+TGG + chr7.4:2375519-2375538 MS.gene050535:CDS 25.0%
! CAATAGTTAATGTATGGTTT+AGG + chr7.4:2375874-2375893 MS.gene050535:intron 25.0%
! CAGTAAAATCCAAATATAGA+TGG - chr7.4:2373241-2373260 None:intergenic 25.0%
! CAGTATTACAAAAATGTACT+GGG + chr7.4:2372986-2373005 MS.gene050535:intron 25.0%
! CATTAGAAAAATGACAACTA+CGG - chr7.4:2376184-2376203 None:intergenic 25.0%
! CGTAACAGAATAATAAAGAA+AGG - chr7.4:2371364-2371383 None:intergenic 25.0%
! CTACTAATATGCTTATTACA+TGG + chr7.4:2372340-2372359 MS.gene050535:intron 25.0%
! CTATAATACATTGTCTCATT+AGG - chr7.4:2372259-2372278 None:intergenic 25.0%
! CTTTAAACTTTAACTGATTG+TGG + chr7.4:2374153-2374172 MS.gene050535:intron 25.0%
! TAAAAGGAATGACTATCATA+CGG + chr7.4:2375198-2375217 MS.gene050535:CDS 25.0%
! TAAGAATAAGCAATTGATCA+TGG - chr7.4:2375026-2375045 None:intergenic 25.0%
! TAGTTCCAAATATTAATGGA+AGG - chr7.4:2373618-2373637 None:intergenic 25.0%
! TATGACTGAATACACATAAT+TGG - chr7.4:2374710-2374729 None:intergenic 25.0%
! TCAGAAGTTGAAAAATATAC+AGG - chr7.4:2373217-2373236 None:intergenic 25.0%
! TGAAAAGATTGGAAAAATCT+TGG - chr7.4:2373534-2373553 None:intergenic 25.0%
! TGTAGCTATCCAAATTAAAA+TGG + chr7.4:2374055-2374074 MS.gene050535:intron 25.0%
! TTAGTCTCTTATCTTTGTAA+GGG - chr7.4:2376208-2376227 None:intergenic 25.0%
! TTCTTATATAAGTAGACTCT+CGG - chr7.4:2373482-2373501 None:intergenic 25.0%
! TTTAGTCTCTTATCTTTGTA+AGG - chr7.4:2376209-2376228 None:intergenic 25.0%
!! ATTTGGATTTTACTGTATAC+AGG + chr7.4:2373246-2373265 MS.gene050535:intron 25.0%
!! ATTTTCTTGAATAGTTTACG+AGG + chr7.4:2372196-2372215 MS.gene050535:intron 25.0%
!! CAGTACATTTTTGTAATACT+GGG - chr7.4:2372987-2373006 None:intergenic 25.0%
!! GATAGCATAACAAACTTTTA+AGG - chr7.4:2373177-2373196 None:intergenic 25.0%
!! GTATTCATTCATCTTTTACA+GGG + chr7.4:2376111-2376130 MS.gene050535:intron 25.0%
!! TGGATATTTAGAGTATCAAT+TGG + chr7.4:2371938-2371957 MS.gene050535:intron 25.0%
!! TGTATTCATTCATCTTTTAC+AGG + chr7.4:2376110-2376129 MS.gene050535:intron 25.0%
!!! ATAACAAACTTTTAAGGCTA+CGG - chr7.4:2373171-2373190 None:intergenic 25.0%
!!! TATGTTCCTCCATTTTAATT+TGG - chr7.4:2374067-2374086 None:intergenic 25.0%
AAAACAACACCAAGATGAAA+GGG - chr7.4:2372479-2372498 None:intergenic 30.0%
AAATTTATCAGTGGAAATGG+TGG + chr7.4:2372733-2372752 MS.gene050535:intron 30.0%
AACTAGACTAGATAAACATG+TGG - chr7.4:2375378-2375397 None:intergenic 30.0%
AACTTGATGTTATTCCTTCT+TGG + chr7.4:2373742-2373761 MS.gene050535:CDS 30.0%
AATCTTTGTACTGAGTTGTA+AGG + chr7.4:2374468-2374487 MS.gene050535:intron 30.0%
AATTTATCAGTGGAAATGGT+GGG + chr7.4:2372734-2372753 MS.gene050535:intron 30.0%
AATTTCCTAACTTCCTCATT+TGG + chr7.4:2373407-2373426 MS.gene050535:intron 30.0%
ACAGGAAATCTATATTCACT+AGG - chr7.4:2373199-2373218 None:intergenic 30.0%
ACTTCTGATCCATCTATATT+TGG + chr7.4:2373229-2373248 MS.gene050535:intron 30.0%
AGAAGGAATAACATCAAGTT+TGG - chr7.4:2373742-2373761 None:intergenic 30.0%
AGCAGGACATAGAAAAAATT+AGG - chr7.4:2373829-2373848 None:intergenic 30.0%
AGCTATCCAAATTAAAATGG+AGG + chr7.4:2374058-2374077 MS.gene050535:intron 30.0%
AGTTCTATACTAACATCAGA+AGG - chr7.4:2373440-2373459 None:intergenic 30.0%
ATAAGAGACTAAAACGTTGT+GGG + chr7.4:2376216-2376235 MS.gene050535:intron 30.0%
ATAATTGTGTGAACTCATCT+AGG + chr7.4:2375117-2375136 MS.gene050535:intron 30.0%
ATCAATAAGATACTTAGCAG+TGG - chr7.4:2371267-2371286 None:intergenic 30.0%
ATCTTTGTACTGAGTTGTAA+GGG + chr7.4:2374469-2374488 MS.gene050535:intron 30.0%
ATGTGCCTTCCATTAATATT+TGG + chr7.4:2373610-2373629 MS.gene050535:intron 30.0%
ATTAAGAAATCCACTTTGTC+AGG - chr7.4:2374451-2374470 None:intergenic 30.0%
CAAAGATTTATCCAAAACAG+TGG + chr7.4:2371076-2371095 MS.gene050535:CDS 30.0%
CATATAGATTTATTCCTTGC+TGG - chr7.4:2374118-2374137 None:intergenic 30.0%
CCAGTATTACAAAAATGTAC+TGG + chr7.4:2372985-2373004 MS.gene050535:intron 30.0%
CTATTATGAACCACCTATAA+TGG - chr7.4:2376452-2376471 None:intergenic 30.0%
GATGTTAGTATAGAACTCAA+TGG + chr7.4:2373443-2373462 MS.gene050535:intron 30.0%
GCAGGACATAGAAAAAATTA+GGG - chr7.4:2373828-2373847 None:intergenic 30.0%
GCTAAGTATCTTATTGATCA+TGG + chr7.4:2371269-2371288 MS.gene050535:CDS 30.0%
GTCACTGTTCTATTAAAACA+TGG + chr7.4:2371787-2371806 MS.gene050535:CDS 30.0%
TATTTGCCTTGTAGTTTCAT+AGG + chr7.4:2373966-2373985 MS.gene050535:intron 30.0%
TCAAGACTTTACTTGTGTAT+AGG - chr7.4:2375233-2375252 None:intergenic 30.0%
TCATTGAGACATAACTAACA+CGG - chr7.4:2375328-2375347 None:intergenic 30.0%
TCATTTGAGTGACATATTGT+AGG + chr7.4:2372839-2372858 MS.gene050535:intron 30.0%
TTAAGATGTTTCTCCAAACA+TGG - chr7.4:2371415-2371434 None:intergenic 30.0%
TTATTCCATAAGACATTTGC+CGG + chr7.4:2376506-2376525 MS.gene050535:intron 30.0%
TTTCTCATTTATCACTCTTC+TGG + chr7.4:2374885-2374904 MS.gene050535:intron 30.0%
! ATTGATGATAAAGACGAAGA+CGG + chr7.4:2371200-2371219 MS.gene050535:intron 30.0%
! CCAGTACATTTTTGTAATAC+TGG - chr7.4:2372988-2373007 None:intergenic 30.0%
! GAGATAATTACGCTTACTTT+TGG + chr7.4:2373885-2373904 MS.gene050535:intron 30.0%
! GCTAGTATGATAATGTAATC+AGG + chr7.4:2372889-2372908 MS.gene050535:intron 30.0%
! GTTGATGAATGTACCTTAAA+AGG + chr7.4:2373125-2373144 MS.gene050535:intron 30.0%
! TGATTTGGATATGTGAAACA+TGG + chr7.4:2372642-2372661 MS.gene050535:intron 30.0%
! TTCTTTTTGAATGTGTTTGC+AGG + chr7.4:2375463-2375482 MS.gene050535:intron 30.0%
! TTTAATTGCTTCCACTGTTT+TGG - chr7.4:2371090-2371109 None:intergenic 30.0%
!! GATTTGCAGTTATTTTGTTG+AGG + chr7.4:2371163-2371182 MS.gene050535:intron 30.0%
!! TGATATGTGGTTTTTGTTTC+AGG + chr7.4:2371655-2371674 MS.gene050535:intron 30.0%
!!! GCTGTACTTTTTTCTCAATT+TGG + chr7.4:2374602-2374621 MS.gene050535:intron 30.0%
!!! TAACAAACTTTTAAGGCTAC+GGG - chr7.4:2373170-2373189 None:intergenic 30.0%
!!! TAATTTTTTCTATGTCCTGC+TGG + chr7.4:2373828-2373847 MS.gene050535:intron 30.0%
AAATAACCAGCCAAAAACTG+AGG - chr7.4:2374825-2374844 None:intergenic 35.0%
AACATCAAGTTTGGATGTCA+CGG - chr7.4:2373733-2373752 None:intergenic 35.0%
AAGGGAAGAGATAGATACAT+TGG + chr7.4:2373055-2373074 MS.gene050535:intron 35.0%
AAGTTATCCTTGAGAGCTTA+TGG + chr7.4:2371490-2371509 MS.gene050535:intron 35.0%
AATAACCAGCCAAAAACTGA+GGG - chr7.4:2374824-2374843 None:intergenic 35.0%
ACATACCCCTCTTAATAAGT+TGG + chr7.4:2376659-2376678 MS.gene050535:CDS 35.0%
ACCCATCCAACTTATTAAGA+GGG - chr7.4:2376668-2376687 None:intergenic 35.0%
ATAAATTCCCTGTTGAAAGC+AGG + chr7.4:2373346-2373365 MS.gene050535:CDS 35.0%
ATAATGCGGTGACTATTGTA+AGG - chr7.4:2373930-2373949 None:intergenic 35.0%
ATATGCTTATTACATGGGCA+TGG + chr7.4:2372346-2372365 MS.gene050535:intron 35.0%
ATCAGAAAGTAAAAAGCAGC+AGG + chr7.4:2373794-2373813 MS.gene050535:CDS 35.0%
ATCTTACGAGTACAGTTTAC+TGG + chr7.4:2376286-2376305 MS.gene050535:intron 35.0%
ATGCTTAGAGCTGTTAATAC+AGG + chr7.4:2372568-2372587 MS.gene050535:CDS 35.0%
ATTAAAGATGCAAACAAGCG+TGG + chr7.4:2371104-2371123 MS.gene050535:CDS 35.0%
ATTCCTTCTTGGACTATTGA+TGG + chr7.4:2373753-2373772 MS.gene050535:CDS 35.0%
ATTGAGACATAACTAACACG+GGG - chr7.4:2375326-2375345 None:intergenic 35.0%
CAAAACAACACCAAGATGAA+AGG - chr7.4:2372480-2372499 None:intergenic 35.0%
CACGATTCTATGAATGATGT+TGG - chr7.4:2372794-2372813 None:intergenic 35.0%
CAGAATCCTAAGAAGAAGAA+AGG - chr7.4:2374865-2374884 None:intergenic 35.0%
CATATCACAACAAAATCAGC+AGG - chr7.4:2371642-2371661 None:intergenic 35.0%
CATTGAGACATAACTAACAC+GGG - chr7.4:2375327-2375346 None:intergenic 35.0%
GAAGCTGGAAGAAAATTTCA+TGG + chr7.4:2376142-2376161 MS.gene050535:CDS 35.0%
GATAAGAGACTAAAACGTTG+TGG + chr7.4:2376215-2376234 MS.gene050535:intron 35.0%
GCTAAAGTAAATGTTAGTGC+TGG + chr7.4:2373274-2373293 MS.gene050535:CDS 35.0%
GTTCAAAGCTATAGAAAGCT+GGG + chr7.4:2373086-2373105 MS.gene050535:intron 35.0%
TAAAGAAAATAACCGGTCTG+TGG + chr7.4:2374519-2374538 MS.gene050535:CDS 35.0%
TAATAGGAAAACACACCTCA+GGG - chr7.4:2374573-2374592 None:intergenic 35.0%
TAATGCTTTCCCTTTCATCT+TGG + chr7.4:2372467-2372486 MS.gene050535:intron 35.0%
TCACAAGATCTTCATACTTG+AGG - chr7.4:2376585-2376604 None:intergenic 35.0%
TCCTGACTTAGAAAGTGATT+CGG + chr7.4:2371720-2371739 MS.gene050535:CDS 35.0%
TGACAACCTATGAAACTACA+AGG - chr7.4:2373975-2373994 None:intergenic 35.0%
TGACAACTACGGTTTATCTT+TGG - chr7.4:2376173-2376192 None:intergenic 35.0%
TTAATAGGAAAACACACCTC+AGG - chr7.4:2374574-2374593 None:intergenic 35.0%
TTAATATGGACCGCCATTAT+AGG + chr7.4:2376436-2376455 MS.gene050535:intron 35.0%
TTATGAACCACCTATAATGG+CGG - chr7.4:2376449-2376468 None:intergenic 35.0%
TTCAAGGGTCGTAGAAATAA+AGG - chr7.4:2376635-2376654 None:intergenic 35.0%
TTCCTTCTTGGACTATTGAT+GGG + chr7.4:2373754-2373773 MS.gene050535:CDS 35.0%
TTTATGTCTGTTTGGATCAC+AGG + chr7.4:2373641-2373660 MS.gene050535:intron 35.0%
! AAAGTAAATGTTAGTGCTGG+TGG + chr7.4:2373277-2373296 MS.gene050535:CDS 35.0%
! AGAGGGGTATGTATATTTCA+AGG - chr7.4:2376651-2376670 None:intergenic 35.0%
! ATTTTTGTTGCCTGACAAAG+TGG + chr7.4:2374438-2374457 MS.gene050535:intron 35.0%
! GAGGGGTATGTATATTTCAA+GGG - chr7.4:2376650-2376669 None:intergenic 35.0%
! GCATATTGACTATCGAAATG+TGG - chr7.4:2372063-2372082 None:intergenic 35.0%
! TCTTAATAAGTTGGATGGGT+CGG + chr7.4:2376668-2376687 MS.gene050535:CDS 35.0%
!! ATTGGTCCAAAGCTTGTTAT+AGG + chr7.4:2375606-2375625 MS.gene050535:CDS 35.0%
!! GCTGATTTTGTTGTGATATG+TGG + chr7.4:2371642-2371661 MS.gene050535:intron 35.0%
!! TTGGTCCAAAGCTTGTTATA+GGG + chr7.4:2375607-2375626 MS.gene050535:CDS 35.0%
AATTGCATGTTGTCAAGGCT+CGG + chr7.4:2376412-2376431 MS.gene050535:intron 40.0%
ACATCAAGTTTGGATGTCAC+GGG - chr7.4:2373732-2373751 None:intergenic 40.0%
AGAAGGTTATGAGCCAAATG+AGG - chr7.4:2373423-2373442 None:intergenic 40.0%
AGGCAAATTGCATGTTGTCA+AGG + chr7.4:2376407-2376426 MS.gene050535:intron 40.0%
AGTCTATGTTGGATGAAGCT+AGG + chr7.4:2375530-2375549 MS.gene050535:CDS 40.0%
ATAACCAGCCAAAAACTGAG+GGG - chr7.4:2374823-2374842 None:intergenic 40.0%
ATCAAAATCAAGAGGGGATG+AGG + chr7.4:2375171-2375190 MS.gene050535:CDS 40.0%
ATCAGAGACGCTGAAAAGAT+TGG - chr7.4:2373545-2373564 None:intergenic 40.0%
ATCAGTTCCTGCTTTCAACA+GGG - chr7.4:2373356-2373375 None:intergenic 40.0%
ATCCCATCAATAGTCCAAGA+AGG - chr7.4:2373759-2373778 None:intergenic 40.0%
ATGAGCCAAATGAGGAAGTT+AGG - chr7.4:2373415-2373434 None:intergenic 40.0%
ATTTGCGGAACAATTAGACG+AGG + chr7.4:2371052-2371071 MS.gene050535:CDS 40.0%
CATTGTGAAAATGGCAATGC+AGG + chr7.4:2376387-2376406 MS.gene050535:intron 40.0%
CCATCATCAGTTTCAGCATT+GGG - chr7.4:2372506-2372525 None:intergenic 40.0%
CCCATCCAACTTATTAAGAG+GGG - chr7.4:2376667-2376686 None:intergenic 40.0%
CCTAAATTGCTAGCAATGGT+AGG - chr7.4:2371302-2371321 None:intergenic 40.0%
CCTACCATTGCTAGCAATTT+AGG + chr7.4:2371299-2371318 MS.gene050535:CDS 40.0%
CCTGACTTAGAAAGTGATTC+GGG + chr7.4:2371721-2371740 MS.gene050535:CDS 40.0%
CGTTCAAAGCTATAGAAAGC+TGG + chr7.4:2373085-2373104 MS.gene050535:intron 40.0%
CTGCAACAGATGAAATGAGT+GGG - chr7.4:2372535-2372554 None:intergenic 40.0%
CTTATCCAGTGTAGTGCATA+TGG + chr7.4:2373575-2373594 MS.gene050535:intron 40.0%
GACCCATCCAACTTATTAAG+AGG - chr7.4:2376669-2376688 None:intergenic 40.0%
GATTAAAGACTTGCATGTGC+TGG - chr7.4:2376054-2376073 None:intergenic 40.0%
GATTGCTCTATGTCCATGTT+TGG + chr7.4:2371399-2371418 MS.gene050535:intron 40.0%
GCAACGGATAACAACAAAGA+TGG - chr7.4:2374797-2374816 None:intergenic 40.0%
GGTTCCTAAATTGCTAGCAA+TGG - chr7.4:2371306-2371325 None:intergenic 40.0%
TAAGTCAGGATTAACTCCTC+TGG - chr7.4:2371710-2371729 None:intergenic 40.0%
TATCAGTCCATAAGCTCTCA+AGG - chr7.4:2371500-2371519 None:intergenic 40.0%
TCATACCGGCAAATGTCTTA+TGG - chr7.4:2376514-2376533 None:intergenic 40.0%
TGCAACAGATGAAATGAGTG+GGG - chr7.4:2372534-2372553 None:intergenic 40.0%
TGCTAGCAATTTAGGAACCA+CGG + chr7.4:2371307-2371326 MS.gene050535:CDS 40.0%
TTATCAGCTGCAATGTGCAA+AGG - chr7.4:2373310-2373329 None:intergenic 40.0%
TTCATCAAACCTCTGCAACA+AGG - chr7.4:2375738-2375757 None:intergenic 40.0%
TTGCACATTGCAGCTGATAA+TGG + chr7.4:2373310-2373329 MS.gene050535:CDS 40.0%
TTGCATCATTCTGCTGGAAT+AGG + chr7.4:2371332-2371351 MS.gene050535:CDS 40.0%
TTTGCCGGTATGATACGATA+CGG + chr7.4:2376521-2376540 MS.gene050535:CDS 40.0%
TTTGCGGAACAATTAGACGA+GGG + chr7.4:2371053-2371072 MS.gene050535:CDS 40.0%
! ACCCCTCTTAATAAGTTGGA+TGG + chr7.4:2376663-2376682 MS.gene050535:CDS 40.0%
! ATCTGTTGCAGCTGATTCTT+TGG + chr7.4:2372544-2372563 MS.gene050535:CDS 40.0%
! ATCTTCATACTTGAGGCACT+CGG - chr7.4:2376578-2376597 None:intergenic 40.0%
! CCCCTCTTAATAAGTTGGAT+GGG + chr7.4:2376664-2376683 MS.gene050535:CDS 40.0%
! CTTCATTTTGCTGCTCTTGA+AGG + chr7.4:2371131-2371150 MS.gene050535:CDS 40.0%
! CTTTAAGAGATCGAGATTGC+CGG - chr7.4:2370945-2370964 None:intergenic 40.0%
! GCTTTGTTCTTCCTATCATC+TGG + chr7.4:2372006-2372025 MS.gene050535:intron 40.0%
! GGATTTTACTGTATACAGGC+AGG + chr7.4:2373250-2373269 MS.gene050535:intron 40.0%
! GTAGAAATAAAGGCTCTGGT+GGG - chr7.4:2376625-2376644 None:intergenic 40.0%
! GTAGAGCATTAAGACCAGAT+TGG + chr7.4:2375588-2375607 MS.gene050535:CDS 40.0%
! TAGAAATAAAGGCTCTGGTG+GGG - chr7.4:2376624-2376643 None:intergenic 40.0%
!! ACTTGTTGAGACGCCTTTTA+AGG - chr7.4:2373141-2373160 None:intergenic 40.0%
!! AGCTGCAAATGCTTTTTACG+AGG + chr7.4:2375757-2375776 MS.gene050535:CDS 40.0%
!! ATTGATTTGAATCCCAGCGA+TGG + chr7.4:2375488-2375507 MS.gene050535:CDS 40.0%
!! ATTTGCTATCCTTGTTGCAG+AGG + chr7.4:2375726-2375745 MS.gene050535:intron 40.0%
!! GCTGCAAATGCTTTTTACGA+GGG + chr7.4:2375758-2375777 MS.gene050535:CDS 40.0%
!! GGTTTTTGTTTCAGGAGACA+CGG + chr7.4:2371663-2371682 MS.gene050535:intron 40.0%
!! TAACAAGCTTTGGACCAATC+TGG - chr7.4:2375605-2375624 None:intergenic 40.0%
!! TCCAAAGCTTGTTATAGGGA+AGG + chr7.4:2375611-2375630 MS.gene050535:CDS 40.0%
!! TGCAGAATCGTTTTCTAGAG+TGG - chr7.4:2372294-2372313 None:intergenic 40.0%
!!! AAACTTTTAAGGCTACGGGA+TGG - chr7.4:2373166-2373185 None:intergenic 40.0%
!!! AACTTTTAAGGCTACGGGAT+GGG - chr7.4:2373165-2373184 None:intergenic 40.0%
AAAAACTGAGGGGAACGCAA+CGG - chr7.4:2374813-2374832 None:intergenic 45.0%
AATACAGGTTGCAGCTGGAA+GGG + chr7.4:2373677-2373696 MS.gene050535:CDS 45.0%
AGACAGTGCACATACTCGAT+AGG - chr7.4:2374921-2374940 None:intergenic 45.0%
AGACCACAGATCCAGATGAT+AGG - chr7.4:2372020-2372039 None:intergenic 45.0%
AGCGAGCCTTTCTTCTTCTT+AGG + chr7.4:2374856-2374875 MS.gene050535:intron 45.0%
AGGAGCTTGTAAATGCGTTC+AGG + chr7.4:2375804-2375823 MS.gene050535:CDS 45.0%
AGTAGACTCTCGGCATTGTT+TGG - chr7.4:2373472-2373491 None:intergenic 45.0%
ATATGGACCGCCATTATAGG+TGG + chr7.4:2376439-2376458 MS.gene050535:intron 45.0%
ATTCCTTAACTCTGTCCAGC+AGG - chr7.4:2373846-2373865 None:intergenic 45.0%
ATTGCATGTTGTCAAGGCTC+GGG + chr7.4:2376413-2376432 MS.gene050535:intron 45.0%
CACAACCATATGCACTACAC+TGG - chr7.4:2373583-2373602 None:intergenic 45.0%
CAGTGTAGTGCATATGGTTG+TGG + chr7.4:2373581-2373600 MS.gene050535:intron 45.0%
CATCAAGTTTGGATGTCACG+GGG - chr7.4:2373731-2373750 None:intergenic 45.0%
CCCAATGCTGAAACTGATGA+TGG + chr7.4:2372503-2372522 MS.gene050535:CDS 45.0%
CCCGAATCACTTTCTAAGTC+AGG - chr7.4:2371724-2371743 None:intergenic 45.0%
CTTCCTATCATCTGGATCTG+TGG + chr7.4:2372014-2372033 MS.gene050535:intron 45.0%
GAAACGTGAATCATGTGTCC+TGG - chr7.4:2375697-2375716 None:intergenic 45.0%
GAATGCAATGTACCATCGCT+GGG - chr7.4:2375503-2375522 None:intergenic 45.0%
GACAGTGCACATACTCGATA+GGG - chr7.4:2374920-2374939 None:intergenic 45.0%
GATCAGTTCCTGCTTTCAAC+AGG - chr7.4:2373357-2373376 None:intergenic 45.0%
GCCATCATCAGTTTCAGCAT+TGG - chr7.4:2372507-2372526 None:intergenic 45.0%
GCCTTCCCTATAACAAGCTT+TGG - chr7.4:2375615-2375634 None:intergenic 45.0%
GCTGCAACAGATGAAATGAG+TGG - chr7.4:2372536-2372555 None:intergenic 45.0%
GGTCGTAGAAATAAAGGCTC+TGG - chr7.4:2376629-2376648 None:intergenic 45.0%
TACTGGGAATCAGTGCTAGT+GGG + chr7.4:2373002-2373021 MS.gene050535:intron 45.0%
TATTCCTTGCTGGAGAATGC+TGG - chr7.4:2374108-2374127 None:intergenic 45.0%
TCGAGAGCAAAATATCCCTG+AGG + chr7.4:2374555-2374574 MS.gene050535:CDS 45.0%
TGAATGCAATGTACCATCGC+TGG - chr7.4:2375504-2375523 None:intergenic 45.0%
TGATCCTAATGTCTCTGACG+AGG + chr7.4:2373372-2373391 MS.gene050535:CDS 45.0%
TGCGGTGACTATTGTAAGGA+CGG - chr7.4:2373926-2373945 None:intergenic 45.0%
TGTCAAGGCTCGGGTTAATA+TGG + chr7.4:2376422-2376441 MS.gene050535:intron 45.0%
TGTCCTGGAGCAAATGTCAA+GGG - chr7.4:2375682-2375701 None:intergenic 45.0%
TGTCTGTTTGGATCACAGGA+TGG + chr7.4:2373645-2373664 MS.gene050535:intron 45.0%
TTACAAGCTCCTTGCTCTCA+GGG - chr7.4:2375796-2375815 None:intergenic 45.0%
TTTACAAGCTCCTTGCTCTC+AGG - chr7.4:2375797-2375816 None:intergenic 45.0%
! AAAGACTTGCATGTGCTGGT+TGG - chr7.4:2376050-2376069 None:intergenic 45.0%
! AGAAATAAAGGCTCTGGTGG+GGG - chr7.4:2376623-2376642 None:intergenic 45.0%
! CGTAGAAATAAAGGCTCTGG+TGG - chr7.4:2376626-2376645 None:intergenic 45.0%
! GAGGGGATGAGGCTTTTAAA+AGG + chr7.4:2375182-2375201 MS.gene050535:CDS 45.0%
! GCATTGGCGCATTGTGAAAA+TGG + chr7.4:2376378-2376397 MS.gene050535:intron 45.0%
! GGATGGTGTTAAGCCAATAC+AGG + chr7.4:2373662-2373681 MS.gene050535:intron 45.0%
! TGTTTCTGTGCAGTGTTCAC+TGG + chr7.4:2375348-2375367 MS.gene050535:intron 45.0%
AAACAGCAGCATCCACAGAC+CGG - chr7.4:2374534-2374553 None:intergenic 50.0%
AACACTTGACCCTGAGAGCA+AGG + chr7.4:2375784-2375803 MS.gene050535:CDS 50.0%
AAGCCAATACAGGTTGCAGC+TGG + chr7.4:2373672-2373691 MS.gene050535:CDS 50.0%
ACATGCCAGCAACAAACGCA+AGG - chr7.4:2375642-2375661 None:intergenic 50.0%
ACGGCTTTGCATCATTCTGC+TGG + chr7.4:2371326-2371345 MS.gene050535:CDS 50.0%
AGCAGAATGATGCAAAGCCG+TGG - chr7.4:2371327-2371346 None:intergenic 50.0%
ATACAGGTTGCAGCTGGAAG+GGG + chr7.4:2373678-2373697 MS.gene050535:CDS 50.0%
CAATACAGGTTGCAGCTGGA+AGG + chr7.4:2373676-2373695 MS.gene050535:CDS 50.0%
CGGACCGTATCGTATCATAC+CGG - chr7.4:2376528-2376547 None:intergenic 50.0%
CTCACCTCGTCAGAGACATT+AGG - chr7.4:2373379-2373398 None:intergenic 50.0%
CTCATTCATGCTGCACGTCA+GGG + chr7.4:2371233-2371252 MS.gene050535:CDS 50.0%
CTTCCAGCTGCAACCTGTAT+TGG - chr7.4:2373678-2373697 None:intergenic 50.0%
GACATAACTAACACGGGGCA+TGG - chr7.4:2375321-2375340 None:intergenic 50.0%
GAGCAAATGTCAAGGGGGAA+AGG - chr7.4:2375675-2375694 None:intergenic 50.0%
GAGTTGTAAGGGCAATGTGC+AGG + chr7.4:2374480-2374499 MS.gene050535:intron 50.0%
GTACTGGGAATCAGTGCTAG+TGG + chr7.4:2373001-2373020 MS.gene050535:intron 50.0%
GTCCTGGAGCAAATGTCAAG+GGG - chr7.4:2375681-2375700 None:intergenic 50.0%
GTGTCCTGGAGCAAATGTCA+AGG - chr7.4:2375683-2375702 None:intergenic 50.0%
TACAGGGAAGCTGTTGAAGC+TGG + chr7.4:2376127-2376146 MS.gene050535:intron 50.0%
TCCTGGAGCAAATGTCAAGG+GGG - chr7.4:2375680-2375699 None:intergenic 50.0%
TCTCATTCATGCTGCACGTC+AGG + chr7.4:2371232-2371251 MS.gene050535:CDS 50.0%
TGTCAAGGGGGAAAGGTTTC+AGG - chr7.4:2375668-2375687 None:intergenic 50.0%
TGTCCTGCTGGACAGAGTTA+AGG + chr7.4:2373840-2373859 MS.gene050535:intron 50.0%
! AAGTGATTCGGGAACACCGT+TGG + chr7.4:2371732-2371751 MS.gene050535:CDS 50.0%
! ATTCGGGAACACCGTTGGTT+TGG + chr7.4:2371737-2371756 MS.gene050535:CDS 50.0%
! GCAGGCTTTAGCTGATGCAA+AGG + chr7.4:2375562-2375581 MS.gene050535:CDS 50.0%
! GTTGCGTTCCCCTCAGTTTT+TGG + chr7.4:2374812-2374831 MS.gene050535:intron 50.0%
!! CTTGAGCATTTGCTGTCCAG+AGG + chr7.4:2371691-2371710 MS.gene050535:CDS 50.0%
!! TTCGGGAACACCGTTGGTTT+GGG + chr7.4:2371738-2371757 MS.gene050535:CDS 50.0%
!! TTGCATGTGCTGGTTGGCAT+TGG - chr7.4:2376044-2376063 None:intergenic 50.0%
!!! GCTGCTCTCTTTTTGGCTTC+AGG - chr7.4:2375148-2375167 None:intergenic 50.0%
CAAGCCAGCATTCTCCAGCA+AGG + chr7.4:2374101-2374120 MS.gene050535:intron 55.0%
CACTGGGTGTGCGTACATGT+CGG - chr7.4:2376554-2376573 None:intergenic 55.0%
CTGCCTAACTGCAAGTGCGT+CGG - chr7.4:2370891-2370910 None:intergenic 55.0%
CTTCCGACGCACTTGCAGTT+AGG + chr7.4:2370885-2370904 MS.gene050535:CDS 55.0%
GAAGCTAGGTCAAGCTGAGC+AGG + chr7.4:2375544-2375563 MS.gene050535:CDS 55.0%
TCCCCCTTGACATTTGCTCC+AGG + chr7.4:2375676-2375695 MS.gene050535:intron 55.0%
TGACCAGCAGCCCAAACCAA+CGG - chr7.4:2371751-2371770 None:intergenic 55.0%
TTCCTCAACGCTGCTCGTAC+CGG + chr7.4:2370923-2370942 MS.gene050535:CDS 55.0%
! ACTTGAGGCACTCGGTCACT+GGG - chr7.4:2376570-2376589 None:intergenic 55.0%
! ATAAAGGCTCTGGTGGGGGA+AGG - chr7.4:2376619-2376638 None:intergenic 55.0%
! GTGTGCGTACATGTCGGTTG+CGG - chr7.4:2376548-2376567 None:intergenic 55.0%
! TACTTGAGGCACTCGGTCAC+TGG - chr7.4:2376571-2376590 None:intergenic 55.0%
! TGCAAGTGCGTCGGAAGCAT+CGG - chr7.4:2370882-2370901 None:intergenic 55.0%
!!! CGTTCCCCTCAGTTTTTGGC+TGG + chr7.4:2374816-2374835 MS.gene050535:intron 55.0%
GCAGCTGGAAGGGGAAATCG+TGG + chr7.4:2373687-2373706 MS.gene050535:CDS 60.0%
! CGCAGCCTTGCGTTTGTTGC+TGG + chr7.4:2375634-2375653 MS.gene050535:intron 60.0%
!! ACACCGTTGGTTTGGGCTGC+TGG + chr7.4:2371745-2371764 MS.gene050535:CDS 60.0%
!! GCAAGTGCGTCGGAAGCATC+GGG - chr7.4:2370881-2370900 None:intergenic 60.0%
TGCCGGTACGAGCAGCGTTG+AGG - chr7.4:2370928-2370947 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 2370872 2376702 2370872 ID=MS.gene050535
chr7.4 mRNA 2370872 2376702 2370872 ID=MS.gene050535.t1;Parent=MS.gene050535
chr7.4 exon 2370872 2370965 2370872 ID=MS.gene050535.t1.exon1;Parent=MS.gene050535.t1
chr7.4 CDS 2370872 2370965 2370872 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2371051 2371170 2371051 ID=MS.gene050535.t1.exon2;Parent=MS.gene050535.t1
chr7.4 CDS 2371051 2371170 2371051 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2371219 2371353 2371219 ID=MS.gene050535.t1.exon3;Parent=MS.gene050535.t1
chr7.4 CDS 2371219 2371353 2371219 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2371677 2371816 2371677 ID=MS.gene050535.t1.exon4;Parent=MS.gene050535.t1
chr7.4 CDS 2371677 2371816 2371677 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2372503 2372589 2372503 ID=MS.gene050535.t1.exon5;Parent=MS.gene050535.t1
chr7.4 CDS 2372503 2372589 2372503 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2373268 2373393 2373268 ID=MS.gene050535.t1.exon6;Parent=MS.gene050535.t1
chr7.4 CDS 2373268 2373393 2373268 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2373663 2373815 2373663 ID=MS.gene050535.t1.exon7;Parent=MS.gene050535.t1
chr7.4 CDS 2373663 2373815 2373663 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2374502 2374576 2374502 ID=MS.gene050535.t1.exon8;Parent=MS.gene050535.t1
chr7.4 CDS 2374502 2374576 2374502 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2375139 2375240 2375139 ID=MS.gene050535.t1.exon9;Parent=MS.gene050535.t1
chr7.4 CDS 2375139 2375240 2375139 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2375485 2375648 2375485 ID=MS.gene050535.t1.exon10;Parent=MS.gene050535.t1
chr7.4 CDS 2375485 2375648 2375485 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2375748 2375825 2375748 ID=MS.gene050535.t1.exon11;Parent=MS.gene050535.t1
chr7.4 CDS 2375748 2375825 2375748 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2376036 2376094 2376036 ID=MS.gene050535.t1.exon12;Parent=MS.gene050535.t1
chr7.4 CDS 2376036 2376094 2376036 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2376132 2376233 2376132 ID=MS.gene050535.t1.exon13;Parent=MS.gene050535.t1
chr7.4 CDS 2376132 2376233 2376132 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
chr7.4 exon 2376518 2376702 2376518 ID=MS.gene050535.t1.exon14;Parent=MS.gene050535.t1
chr7.4 CDS 2376518 2376702 2376518 ID=cds.MS.gene050535.t1;Parent=MS.gene050535.t1
Gene Sequence

>MS.gene050535

ATGGCTCCCGATGCTTCCGACGCACTTGCAGTTAGGCAGAAAGTTCAACACTTCCTCAACGCTGCTCGTACCGGCAATCTCGATCTCTTAAAGAGTAACTCAATCATTCAATTAATCAACTTATTATTATGTAATACTTCGTTGTTCTTCATTCATCTGATTTTATATTGTTTTCATAGAATTTGCGGAACAATTAGACGAGGGCAAAGATTTATCCAAAACAGTGGAAGCAATTAAAGATGCAAACAAGCGTGGTGCACTTCATTTTGCTGCTCTTGAAGGACAAACTCAGATTTGCAGTTATTTTGTTGAGGATTTGAAGCTTCGTATTGATGATAAAGACGAAGACGGTGAAACTGCTCTCATTCATGCTGCACGTCAGGGACACACTGCCACTGCTAAGTATCTTATTGATCATGGTGCTGATCCTACCATTGCTAGCAATTTAGGAACCACGGCTTTGCATCATTCTGCTGGAATAGGTTTTTTCCTTTCTTTATTATTCTGTTACGTGATGAATTGATTTTGATTGCTCTATGTCCATGTTTGGAGAAACATCTTAATTAAGTGCTTATAGTATAGTATGACAAAAGATAGAATAAGTCAAACTGTTTTCATAAGTTATCCTTGAGAGCTTATGGACTGATAACAAGTGTTTATGTCATTAGAAAATCTCTAATTAGCGAATCCAAACAGAAACTATCTCTTTTTATGCAATGTTATTAGAAAAAGTATTGTGTTGTTAAGTTTGTCTCTCTTGTTATGTGCCTGCTGATTTTGTTGTGATATGTGGTTTTTGTTTCAGGAGACACGGATTTACTTGAGCATTTGCTGTCCAGAGGAGTTAATCCTGACTTAGAAAGTGATTCGGGAACACCGTTGGTTTGGGCTGCTGGTCATGCTCAAGAAGCTGCTGTCACTGTTCTATTAAAACATGGTGCAAATGTAATTCTTCATTCCATTTCTTAATTTGTGTTACTTTGTGATAATGTTACGAAGTACACTCGATTTCTTTTGCTTCAGAAATTTGATTCGTTCGAGTATCAGAATTCTATATCTATTTGATTGGATATTTAGAGTATCAATTGGTGTTTACACTATGCATATTCTTTTCTGTTTCTTCTTTCTAAAATTGCTTTGTTCTTCCTATCATCTGGATCTGTGGTCTTCTGAAGAAACAGTCATTTACCACATTTCGATAGTCAATATGCTCTAGTTTCATTTCAGCAATGTTATCTGACTTTTACATCAATATTTTATTGTTCAAATCGATAAGCGCAATCTTCATAAGCTTTATTGATACACTCTGTCATTGTTGAGATACATTTTCTTGAATAGTTTACGAGGATTGATTAATTTATTCTTCTTGCTTGATTCATCACATCCTAATGAGACAATGTATTATAGCTTGTTTATTTGCCACTCTAGAAAACGATTCTGCATTCTAGTGTACTTTTGTTTTTGTGTACTACTAATATGCTTATTACATGGGCATGGTTGAACAAATTTTCTTTCTTATCTATGCCGTGTTAAGTTTTCAATTTAGTTTCTGAGATATTTTACAGAATATCACTATTGTAATAGTATTACAAATATAATGCTTTCCCTTTCATCTTGGTGTTGTTTTGCAGCCCAATGCTGAAACTGATGATGGCATTACCCCACTCATTTCATCTGTTGCAGCTGATTCTTTGGCATGCTTAGAGCTGTTAATACAGGTTCAACATCTTGTTCAACTTGCAACCCTTACTAAACAATATACTATGTTTATGATTTGGATATGTGAAACATGGAATAAATACTAGAATCTTTGCTGTAATATTATTATACTGATACAGAGATACTCCATGAAAATTGTAGAAAATTTATCAGTGGAAATGGTGGGAAAAACGATGTATATGATGAATTAGTATATATAACCAACATCATTCATAGAATCGTGATGATAAACTATACATTTAATGATTTCATTTGAGTGACATATTGTAGGAGCAATAATGCCATTAAAAATTAAACTGCTAGTATGATAATGTAATCAGGCTGACAATTTCATTCCATGTTATATATCCATAACAATTAGTTAGTTGATTAGTTCAAAGTATATTATATATGCCCAGTATTACAAAAATGTACTGGGAATCAGTGCTAGTGGGTGTTATTTACGAAACATCTATCTAATGAAAAAGGGAAGAGATAGATACATTGGTAAAATACGTTCAAAGCTATAGAAAGCTGGGTTGAACCTTGTATTTTGTTGATGAATGTACCTTAAAAGGCGTCTCAACAAGTACCCATCCCGTAGCCTTAAAAGTTTGTTATGCTATCCTAGTGAATATAGATTTCCTGTATATTTTTCAACTTCTGATCCATCTATATTTGGATTTTACTGTATACAGGCAGGTGCTAAAGTAAATGTTAGTGCTGGTGGAGCAACTCCTTTGCACATTGCAGCTGATAATGGAAGTCTAGAACTTATAAATTCCCTGTTGAAAGCAGGAACTGATCCTAATGTCTCTGACGAGGTGAGACGTATTTAATTTCCTAACTTCCTCATTTGGCTCATAACCTTCTGATGTTAGTATAGAACTCAATGGCTGCCAAACAATGCCGAGAGTCTACTTATATAAGAACCCAATAGTATTTTCTTGTATTCTTGTTTCCAAGATTTTTCCAATCTTTTCAGCGTCTCTGATGTCAACTTTGCTTATCCAGTGTAGTGCATATGGTTGTGGTAAACAATGTGCCTTCCATTAATATTTGGAACTAAATTTTATGTCTGTTTGGATCACAGGATGGTGTTAAGCCAATACAGGTTGCAGCTGGAAGGGGAAATCGTGGAGCTGTTGAGATATTGTTCCCCGTGACATCCAAACTTGATGTTATTCCTTCTTGGACTATTGATGGGATACTTGAGCATGTGCAATCAGAAAGTAAAAAGCAGCAGGTACTGAAGCCCTAATTTTTTCTATGTCCTGCTGGACAGAGTTAAGGAATATCATTGCTGCAAGAACATGAGATAATTACGCTTACTTTTGGTTAAGATAGATGAAGCCGTCCTTACAATAGTCACCGCATTATCTTAAAATACAAAGTATATTTGCCTTGTAGTTTCATAGGTTGTCAAGAATTAAATATTTTCTACATTTATTTTGTTACAAAGAAAAGAGAACTCTACAATTTTACTGTAGCTATCCAAATTAAAATGGAGGAACATAAAATATTCTCTGCTCAAGCCAGCATTCTCCAGCAAGGAATAAATCTATATGCGTAATGCTAAAATTCTTTAAACTTTAACTGATTGTGGTTGCAGTTTTTACTATTATATTGTCTTGATCATATTATACTCTTAAAGTTCAAAAAGGGTTAACTAATTCTTTCTGATACTAGTTTGTATTTTTGTCTCAAGCCAGCATTCTCCAGCAAGGAATAAATCTATATGCGTAATGCTAAAATTCTTTAAACTTTTAAGTGATTGTGGTTGCAGTTTTTACTATTATATTGTCTTGATCATATTATACTCTTAAAGTTCAAAAAGGGTTAACTAATTCTTTCTGATACTAGTTTGTATTTTTGTTGCCTGACAAAGTGGATTTCTTAATCTTTGTACTGAGTTGTAAGGGCAATGTGCAGGATGAATCGCTAAATGTTAAAGAAAATAACCGGTCTGTGGATGCTGCTGTTTCTCGAGAGCAAAATATCCCTGAGGTGTGTTTTCCTATTAAATATATTAGCTGTACTTTTTTCTCAATTTGGTATGTTACAGACTTACAGCTGTACTGTCAATGTAAGTAGCTGCAAAAATATTGTAGATGCTGAAGAAATATGCAAGTCGCATCCAATTATGTGTATTCAGTCATAAGAATCGTCTGTTTACGTAAATCTCTCTCGTTTCTAGATTGTGTATTGCTTCAGAGATTATGCACCATCTTTGTTGTTATCCGTTGCGTTCCCCTCAGTTTTTGGCTGGTTATTTTAAAGATATTTAGCGAGCCTTTCTTCTTCTTAGGATTCTGTTTCTCATTTATCACTCTTCTGGTTTATTGTACCCTATCGAGTATGTGCACTGTCTTATTGAAAAAGAAAAAAAAGTATGTGCACTGTCTTAAACTTTCTTACAAGATTATGATTTTAATACATTGTCAAGTTAGAACCCATGATCAATTGCTTATTCTTATAATAAAATTCGATTTGATTTTTGATCTTTTAGTTAAGTGTGTCAACTTTACTTTTTTTTTTCTTTGTAATATAATTGTGTGAACTCATCTAGGTGTCACCTGAAGCCAAAAAGAGAGCAGCAGAATCAAAATCAAGAGGGGATGAGGCTTTTAAAAGGAATGACTATCATACGGCTATAGATTCCTATACACAAGTAAAGTCTTGATCTCTCGTCTAACTCTTGAACTTCATTCTGTTTGTAACTTTTGCTTGTTGAGTACTTTTCGTGCACCATGCCCCGTGTTAGTTATGTCTCAATGATGTTTCTGTGCAGTGTTCACTGGACATCCACATGTTTATCTAGTCTAGTTTTAGAAAATTAACTGCATTTATCTTCTTACTAAATGACAATCAGTTGATGATATATTCTTTTCTTTTCTTTTTGAATGTGTTTGCAGGCAATTGATTTGAATCCCAGCGATGGTACATTGCATTCAAATAGAAGTCTATGTTGGATGAAGCTAGGTCAAGCTGAGCAGGCTTTAGCTGATGCAAAGGCATGTAGAGCATTAAGACCAGATTGGTCCAAAGCTTGTTATAGGGAAGGCGCAGCCTTGCGTTTGTTGCTGGCATGTTATCCTGAAACCTTTCCCCCTTGACATTTGCTCCAGGACACATGATTCACGTTTCTTAACTTCAATTTGCTATCCTTGTTGCAGAGGTTTGATGAAGCTGCAAATGCTTTTTACGAGGGAGTAACACTTGACCCTGAGAGCAAGGAGCTTGTAAATGCGTTCAGGTCTACACATTGTTTTATTCAGACTTATTTGCACTTTTAGTTATTTTGCAATAGTTAATGTATGGTTTAGGTCTTCTAATAATTTATTGAGCAAATTAAATTTAATTCAATTAAGTCTCTTCATCATTTTTTCTACTTTAAACTCTCAAATTCATATTTTTGAATCAAAATCATCACAAATTTAACTGATCAAATCTTCAAATCGCTCAGATTCACCAATGCCAACCAGCACATGCAAGTCTTTAATCTGTTGATCAGTTCATTAATTTGTATGTATCTAATCATGTATTCATTCATCTTTTACAGGGAAGCTGTTGAAGCTGGAAGAAAATTTCATGGCACAACCAAAGATAAACCGTAGTTGTCATTTTTCTAATGTCCCTTACAAAGATAAGAGACTAAAACGTTGTGGGTGATGCAGCCTTTTAACCTTATTGATATGTATTTTCTTTTGAGTACAATCTTACGAGTACAGTTTACTGGTAATTTATTGCGTTAAAAATTATACTAATTAGAAAGGTTATTGCTTATTTGACATCTTGAAATATTATAGCATTGGCGCATTGTGAAAATGGCAATGCAGGCAAATTGCATGTTGTCAAGGCTCGGGTTAATATGGACCGCCATTATAGGTGGTTCATAATAGATTAGTTTGTAAGTTTAATTGAATCATTTGATTGTTATTCCATAAGACATTTGCCGGTATGATACGATACGGTCCGCAACCGACATGTACGCACACCCAGTGACCGAGTGCCTCAAGTATGAAGATCTTGTGAACTTTATCTTTCCTTCCCCCACCAGAGCCTTTATTTCTACGACCCTTGAAATATACATACCCCTCTTAATAAGTTGGATGGGTCGGTGTAGTGTTTAA
Protein sequence

>MS.gene050535.t1

MAPDASDALAVRQKVQHFLNAARTGNLDLLKKFAEQLDEGKDLSKTVEAIKDANKRGALHFAALEGQTQICNGETALIHAARQGHTATAKYLIDHGADPTIASNLGTTALHHSAGIGDTDLLEHLLSRGVNPDLESDSGTPLVWAAGHAQEAAVTVLLKHGANPNAETDDGITPLISSVAADSLACLELLIQAGAKVNVSAGGATPLHIAADNGSLELINSLLKAGTDPNVSDEDGVKPIQVAAGRGNRGAVEILFPVTSKLDVIPSWTIDGILEHVQSESKKQQDESLNVKENNRSVDAAVSREQNIPEVSPEAKKRAAESKSRGDEAFKRNDYHTAIDSYTQAIDLNPSDGTLHSNRSLCWMKLGQAEQALADAKACRALRPDWSKACYREGAALRLFDEAANAFYEGVTLDPESKELVNAFRFTNANQHMQVFNLLISSLIWKLLKLEENFMAQPKINRSCHFSNVPYKDKRLKRYICRYDTIRSATDMYAHPVTECLKYEDLVNFIFPSPTRAFISTTLEIYIPLLISWMGRCSV