Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026015.t1 | XP_028219228.1 | 67.4 | 657 | 147 | 10 | 27 | 626 | 11 | 657 | 3.00E-147 | 532.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026015.t1 | Q54DA8 | 40.5 | 84 | 47 | 1 | 532 | 612 | 36 | 119 | 8.0e-08 | 60.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026015.t1 | A0A072U5A8 | 93.7 | 460 | 10 | 2 | 186 | 626 | 1 | 460 | 9.0e-138 | 500.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026015.t1 | MTR_7g115280 | 94.130 | 460 | 8 | 2 | 186 | 626 | 1 | 460 | 0.0 | 865 |
MS.gene026015.t1 | MTR_7g115290 | 97.814 | 183 | 4 | 0 | 1 | 183 | 1 | 183 | 9.91e-132 | 384 |
MS.gene026015.t1 | MTR_1g080750 | 67.105 | 152 | 41 | 3 | 37 | 183 | 26 | 173 | 1.23e-57 | 192 |
MS.gene026015.t1 | MTR_5g017450 | 41.304 | 138 | 58 | 6 | 57 | 182 | 43 | 169 | 5.78e-21 | 90.9 |
MS.gene026015.t1 | MTR_1g116590 | 40.566 | 106 | 33 | 2 | 79 | 184 | 39 | 114 | 8.17e-19 | 82.8 |
MS.gene026015.t1 | MTR_5g012030 | 41.905 | 105 | 58 | 1 | 504 | 605 | 2 | 106 | 6.27e-17 | 84.7 |
MS.gene026015.t1 | MTR_5g012030 | 34.211 | 114 | 72 | 1 | 504 | 614 | 392 | 505 | 1.10e-14 | 77.8 |
MS.gene026015.t1 | MTR_4g116160 | 34.043 | 188 | 119 | 3 | 258 | 440 | 70 | 257 | 5.55e-15 | 78.6 |
MS.gene026015.t1 | MTR_4g116160 | 34.043 | 188 | 119 | 3 | 258 | 440 | 70 | 257 | 2.07e-14 | 77.0 |
MS.gene026015.t1 | MTR_4g021880 | 24.933 | 373 | 221 | 12 | 203 | 550 | 101 | 439 | 2.72e-13 | 73.2 |
MS.gene026015.t1 | MTR_4g021880 | 26.518 | 313 | 179 | 9 | 203 | 494 | 101 | 383 | 5.45e-13 | 71.6 |
MS.gene026015.t1 | MTR_4g085970 | 34.000 | 150 | 75 | 5 | 43 | 182 | 13 | 148 | 1.10e-12 | 67.0 |
MS.gene026015.t1 | MTR_1g041435 | 34.579 | 107 | 67 | 1 | 508 | 611 | 15 | 121 | 1.18e-12 | 69.7 |
MS.gene026015.t1 | MTR_2g006870 | 32.704 | 159 | 100 | 3 | 283 | 440 | 533 | 685 | 1.23e-12 | 71.6 |
MS.gene026015.t1 | MTR_5g043640 | 31.737 | 167 | 108 | 4 | 261 | 421 | 56 | 222 | 2.14e-12 | 67.8 |
MS.gene026015.t1 | MTR_5g043640 | 30.573 | 157 | 82 | 4 | 205 | 360 | 96 | 226 | 7.35e-11 | 63.2 |
MS.gene026015.t1 | MTR_2g096760 | 25.552 | 317 | 185 | 8 | 203 | 498 | 15 | 301 | 2.24e-12 | 70.1 |
MS.gene026015.t1 | MTR_3g107720 | 29.612 | 206 | 133 | 5 | 298 | 497 | 543 | 742 | 3.81e-12 | 70.1 |
MS.gene026015.t1 | MTR_1g112830 | 32.402 | 179 | 113 | 4 | 258 | 429 | 169 | 346 | 5.12e-12 | 69.3 |
MS.gene026015.t1 | MTR_5g077770 | 28.634 | 227 | 149 | 5 | 216 | 440 | 522 | 737 | 8.62e-12 | 68.9 |
MS.gene026015.t1 | MTR_5g022050 | 28.289 | 152 | 107 | 2 | 283 | 432 | 251 | 402 | 7.52e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026015.t1 | AT3G04710 | 59.414 | 648 | 190 | 7 | 40 | 621 | 32 | 672 | 0.0 | 712 |
MS.gene026015.t1 | AT3G04710 | 65.055 | 455 | 133 | 4 | 186 | 621 | 1 | 448 | 0.0 | 575 |
MS.gene026015.t1 | AT3G04710 | 65.055 | 455 | 132 | 5 | 186 | 621 | 1 | 447 | 0.0 | 570 |
MS.gene026015.t1 | AT1G08790 | 54.248 | 153 | 58 | 3 | 40 | 183 | 37 | 186 | 1.18e-44 | 157 |
MS.gene026015.t1 | AT3G04700 | 55.414 | 157 | 57 | 2 | 40 | 183 | 32 | 188 | 9.49e-44 | 155 |
MS.gene026015.t1 | AT5G28690 | 54.777 | 157 | 58 | 3 | 40 | 183 | 33 | 189 | 2.86e-39 | 143 |
MS.gene026015.t1 | AT5G28690 | 54.777 | 157 | 58 | 3 | 40 | 183 | 33 | 189 | 2.86e-39 | 143 |
MS.gene026015.t1 | AT5G28690 | 54.777 | 157 | 58 | 3 | 40 | 183 | 33 | 189 | 2.86e-39 | 143 |
MS.gene026015.t1 | AT2G31560 | 40.566 | 106 | 58 | 2 | 79 | 184 | 100 | 200 | 1.58e-20 | 90.5 |
MS.gene026015.t1 | AT2G31560 | 40.566 | 106 | 58 | 2 | 79 | 184 | 100 | 200 | 1.58e-20 | 90.5 |
MS.gene026015.t1 | AT2G31560 | 40.566 | 106 | 58 | 2 | 79 | 184 | 100 | 200 | 1.58e-20 | 90.5 |
MS.gene026015.t1 | AT2G43340 | 43.396 | 106 | 55 | 2 | 79 | 184 | 87 | 187 | 1.46e-19 | 87.4 |
MS.gene026015.t1 | AT1G05870 | 40.741 | 108 | 56 | 3 | 79 | 184 | 86 | 187 | 1.60e-19 | 87.4 |
MS.gene026015.t1 | AT1G05870 | 40.741 | 108 | 56 | 3 | 79 | 184 | 86 | 187 | 1.60e-19 | 87.4 |
MS.gene026015.t1 | AT1G05870 | 40.741 | 108 | 56 | 3 | 79 | 184 | 86 | 187 | 1.60e-19 | 87.4 |
MS.gene026015.t1 | AT1G05870 | 40.741 | 108 | 56 | 3 | 79 | 184 | 86 | 187 | 1.60e-19 | 87.4 |
MS.gene026015.t1 | AT1G05870 | 40.741 | 108 | 56 | 3 | 79 | 184 | 86 | 187 | 1.60e-19 | 87.4 |
MS.gene026015.t1 | AT1G05870 | 40.741 | 108 | 56 | 3 | 79 | 184 | 86 | 187 | 1.60e-19 | 87.4 |
MS.gene026015.t1 | AT1G05870 | 40.741 | 108 | 56 | 3 | 79 | 184 | 86 | 187 | 1.60e-19 | 87.4 |
MS.gene026015.t1 | AT1G05870 | 40.741 | 108 | 56 | 3 | 79 | 184 | 86 | 187 | 1.60e-19 | 87.4 |
MS.gene026015.t1 | AT1G05870 | 40.741 | 108 | 56 | 3 | 79 | 184 | 86 | 187 | 1.60e-19 | 87.4 |
MS.gene026015.t1 | AT1G05870 | 40.741 | 108 | 56 | 3 | 79 | 184 | 86 | 187 | 1.60e-19 | 87.4 |
MS.gene026015.t1 | AT1G05870 | 40.741 | 108 | 56 | 3 | 79 | 184 | 86 | 187 | 1.60e-19 | 87.4 |
MS.gene026015.t1 | AT1G05870 | 40.741 | 108 | 56 | 3 | 79 | 184 | 86 | 187 | 1.60e-19 | 87.4 |
MS.gene026015.t1 | AT4G12400 | 43.750 | 112 | 60 | 1 | 504 | 612 | 2 | 113 | 1.84e-19 | 92.8 |
MS.gene026015.t1 | AT4G12400 | 35.088 | 114 | 71 | 1 | 504 | 614 | 369 | 482 | 6.28e-16 | 81.6 |
MS.gene026015.t1 | AT4G12400 | 43.750 | 112 | 60 | 1 | 504 | 612 | 2 | 113 | 2.04e-19 | 92.4 |
MS.gene026015.t1 | AT4G12400 | 35.088 | 114 | 71 | 1 | 504 | 614 | 369 | 482 | 7.00e-16 | 81.3 |
MS.gene026015.t1 | AT4G33985 | 39.844 | 128 | 62 | 4 | 59 | 182 | 30 | 146 | 3.66e-17 | 79.3 |
MS.gene026015.t1 | AT1G62740 | 39.286 | 112 | 65 | 1 | 504 | 612 | 2 | 113 | 1.26e-16 | 84.0 |
MS.gene026015.t1 | AT1G62740 | 33.929 | 112 | 71 | 1 | 506 | 614 | 384 | 495 | 5.15e-15 | 79.0 |
MS.gene026015.t1 | AT3G50350 | 37.692 | 130 | 61 | 4 | 59 | 182 | 50 | 165 | 1.72e-14 | 72.4 |
MS.gene026015.t1 | AT1G12270 | 39.286 | 112 | 65 | 1 | 504 | 612 | 2 | 113 | 4.20e-14 | 75.9 |
MS.gene026015.t1 | AT1G12270 | 34.821 | 112 | 70 | 1 | 506 | 614 | 385 | 496 | 4.96e-14 | 75.9 |
MS.gene026015.t1 | AT1G04190 | 37.624 | 101 | 60 | 1 | 508 | 605 | 19 | 119 | 4.75e-14 | 74.3 |
MS.gene026015.t1 | AT5G20350 | 33.696 | 184 | 113 | 4 | 258 | 434 | 65 | 246 | 2.83e-13 | 73.6 |
MS.gene026015.t1 | AT5G37500 | 33.708 | 178 | 114 | 4 | 265 | 440 | 538 | 713 | 1.05e-12 | 72.0 |
MS.gene026015.t1 | AT2G15590 | 37.383 | 107 | 52 | 2 | 79 | 182 | 48 | 142 | 1.53e-12 | 66.2 |
MS.gene026015.t1 | AT4G32500 | 28.774 | 212 | 139 | 5 | 294 | 501 | 545 | 748 | 4.81e-12 | 69.7 |
MS.gene026015.t1 | AT2G15610 | 35.659 | 129 | 62 | 6 | 43 | 159 | 11 | 130 | 2.01e-11 | 62.8 |
Find 133 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTACCATTGCTAGCAATTT+AGG | 0.149520 | 7.1:+2138890 | MS.gene026015:CDS |
AGAAGGAATAACATCAATTT+TGG | 0.161591 | 7.1:-2141328 | None:intergenic |
ATCTGTTGCAGCTGATTCTT+TGG | 0.215917 | 7.1:+2140133 | MS.gene026015:CDS |
TTTAATTGCTTCCACTGTTT+TGG | 0.221129 | 7.1:-2138678 | None:intergenic |
AAATTGATGTTATTCCTTCT+TGG | 0.223369 | 7.1:+2141331 | MS.gene026015:CDS |
TTGAGCCCAGTGCCTTAATT+TGG | 0.274017 | 7.1:-2137038 | None:intergenic |
CTCAGAGGATGTATTGAATT+AGG | 0.280954 | 7.1:+2136360 | MS.gene026015:CDS |
ATTACAGATTGTTCTCGATA+TGG | 0.285003 | 7.1:+2138444 | MS.gene026015:intron |
ATTGGTCCAAAGCTTGTTAT+AGG | 0.291093 | 7.1:+2143192 | MS.gene026015:CDS |
TAGCGAGGAAATAGAGTTAC+AGG | 0.292376 | 7.1:+2136113 | MS.gene026015:CDS |
CTTCCAGCTGCAACCTGTAT+TGG | 0.297839 | 7.1:-2141264 | None:intergenic |
TGACAACTACGGTTTATCTT+TGG | 0.308207 | 7.1:-2143756 | None:intergenic |
GGATGTATTGAATTAGGATT+TGG | 0.322686 | 7.1:+2136366 | MS.gene026015:CDS |
TTCGGGAACACCGTTGGTTT+GGG | 0.325527 | 7.1:+2139329 | MS.gene026015:CDS |
ATTCGGGAACACCGTTGGTT+TGG | 0.327829 | 7.1:+2139328 | MS.gene026015:CDS |
ACACCGTTGGTTTGGGCTGC+TGG | 0.331465 | 7.1:+2139336 | MS.gene026015:CDS |
TTGCACATTGCAGCTGATAA+TGG | 0.333370 | 7.1:+2140899 | MS.gene026015:CDS |
TTGCATCATTCTGCTGGAAT+AGG | 0.335655 | 7.1:+2138923 | MS.gene026015:CDS |
ATTCCTTCTTGGACTATTGA+TGG | 0.346294 | 7.1:+2141342 | MS.gene026015:CDS |
TCTCATTCATGCTGCACGTC+AGG | 0.349718 | 7.1:+2138823 | MS.gene026015:CDS |
TGAGCAGTGCGATGCGTTGT+AGG | 0.359078 | 7.1:-2136489 | None:intergenic |
GATCAGTTCCTGCTTTCAAC+AGG | 0.361386 | 7.1:-2140943 | None:intergenic |
TCAAGACTTTACTTGTGTAT+AGG | 0.364581 | 7.1:-2142816 | None:intergenic |
CTCTCCCATGCCATGTCTCC+TGG | 0.364978 | 7.1:-2136270 | None:intergenic |
GCATTGTTGATTCTGATTCT+TGG | 0.366062 | 7.1:+2136550 | MS.gene026015:CDS |
CCCGAATCACTTTCTAAGTC+AGG | 0.367297 | 7.1:-2139312 | None:intergenic |
TTTACAAGCTCCTTGCTCTC+AGG | 0.376147 | 7.1:-2143380 | None:intergenic |
TCCTGACTTAGAAAGTGATT+CGG | 0.397766 | 7.1:+2139311 | MS.gene026015:CDS |
AAAGCTTTGCAATACGTTAC+CGG | 0.401532 | 7.1:+2136410 | MS.gene026015:CDS |
TTTGGATTTAATGAGGAAGA+TGG | 0.407281 | 7.1:+2136384 | MS.gene026015:CDS |
CCATCATCAGTTTCAGCATT+GGG | 0.414646 | 7.1:-2140092 | None:intergenic |
CCTGACTTAGAAAGTGATTC+GGG | 0.427650 | 7.1:+2139312 | MS.gene026015:CDS |
CCGGACTAGGAGACAGGTTC+CGG | 0.434499 | 7.1:-2136458 | None:intergenic |
CTTTAAGAGATCGAGATTGC+CGG | 0.435481 | 7.1:-2138533 | None:intergenic |
AGGAGCTTGTAAATGCGTTC+AGG | 0.442269 | 7.1:+2143390 | MS.gene026015:CDS |
AGGCATTGGCGTTTAAGAAA+AGG | 0.442446 | 7.1:+2136211 | MS.gene026015:CDS |
GCCTTCCCTATAACAAGCTT+TGG | 0.445915 | 7.1:-2143198 | None:intergenic |
TGCAAGTGCGTCGGAAGCAT+CGG | 0.447294 | 7.1:-2138470 | None:intergenic |
GAAGCTGGAAGAAAATTTCA+TGG | 0.454075 | 7.1:+2143728 | MS.gene026015:CDS |
TCGTCTATTGCGAGTCCTAC+TGG | 0.454107 | 7.1:+2136525 | MS.gene026015:CDS |
ACGGCTTTGCATCATTCTGC+TGG | 0.454550 | 7.1:+2138917 | MS.gene026015:CDS |
ATCAAAATCAAGAGGGGATG+AGG | 0.458977 | 7.1:+2142757 | MS.gene026015:CDS |
ATGCTTAGAGCTGTTAATAC+AGG | 0.462858 | 7.1:+2140157 | MS.gene026015:CDS |
TTGGTCCAAAGCTTGTTATA+GGG | 0.462903 | 7.1:+2143193 | MS.gene026015:CDS |
TAAATGCTAAAGAAAATAAC+CGG | 0.465720 | 7.1:+2142101 | MS.gene026015:CDS |
TAACAAGCTTTGGACCAATC+TGG | 0.465796 | 7.1:-2143188 | None:intergenic |
TTCCTTCTTGGACTATTGAT+GGG | 0.466672 | 7.1:+2141343 | MS.gene026015:CDS |
GAAGCTAGGTCAAGCTGAGC+AGG | 0.467307 | 7.1:+2143130 | MS.gene026015:CDS |
TACAGGGAAGCTGTTGAAGC+TGG | 0.468882 | 7.1:+2143713 | MS.gene026015:intron |
TAAGTCAGGATTAACTCCTC+TGG | 0.476327 | 7.1:-2139298 | None:intergenic |
CTTCCGACGCACTTGCAGTT+AGG | 0.476513 | 7.1:+2138476 | MS.gene026015:CDS |
GCTAAGTATCTTATTGATCA+TGG | 0.477834 | 7.1:+2138860 | MS.gene026015:CDS |
CCGGAACCTGTCTCCTAGTC+CGG | 0.479308 | 7.1:+2136458 | MS.gene026015:CDS |
TCAGGAGGAAGAGTTGCAAC+AGG | 0.481110 | 7.1:+2136167 | MS.gene026015:CDS |
GCAAGTGCGTCGGAAGCATC+GGG | 0.488101 | 7.1:-2138469 | None:intergenic |
GCCATCATCAGTTTCAGCAT+TGG | 0.492771 | 7.1:-2140093 | None:intergenic |
TGATCAGAAGGCAGAGGCAT+TGG | 0.495884 | 7.1:+2136197 | MS.gene026015:CDS |
CTCACCTCGTCAGAGACATT+AGG | 0.497830 | 7.1:-2140965 | None:intergenic |
TGAATGCAATGTACCATCGC+TGG | 0.498194 | 7.1:-2143087 | None:intergenic |
ATAAATTCCCTGTTGAAAGC+AGG | 0.500352 | 7.1:+2140935 | MS.gene026015:CDS |
TTACAAGCTCCTTGCTCTCA+GGG | 0.500721 | 7.1:-2143379 | None:intergenic |
TAAAAGGAATGACTATCATA+CGG | 0.521638 | 7.1:+2142784 | MS.gene026015:CDS |
ATTAGGATTTGGATTTAATG+AGG | 0.528015 | 7.1:+2136377 | MS.gene026015:CDS |
CTATCAATGTGTGGAACACC+AGG | 0.530999 | 7.1:+2136252 | MS.gene026015:CDS |
AATACAGGTTGCAGCTGGAA+GGG | 0.537141 | 7.1:+2141266 | MS.gene026015:CDS |
GGATGGTGTTAAGCCAATAC+AGG | 0.538177 | 7.1:+2141251 | MS.gene026015:intron |
CAATACAGGTTGCAGCTGGA+AGG | 0.538296 | 7.1:+2141265 | MS.gene026015:CDS |
GAATGCAATGTACCATCGCT+GGG | 0.539778 | 7.1:-2143086 | None:intergenic |
AAGCCAATACAGGTTGCAGC+TGG | 0.541821 | 7.1:+2141261 | MS.gene026015:CDS |
GAAATAGAGTTACAGGGAGG+AGG | 0.543729 | 7.1:+2136120 | MS.gene026015:CDS |
CTCATTCATGCTGCACGTCA+GGG | 0.549715 | 7.1:+2138824 | MS.gene026015:CDS |
AACACTTGACCCTGAGAGCA+AGG | 0.550632 | 7.1:+2143370 | MS.gene026015:CDS |
ATACAGGTTGCAGCTGGAAG+GGG | 0.552229 | 7.1:+2141267 | MS.gene026015:CDS |
GAGACATGGCATGGGAGAGA+AGG | 0.556511 | 7.1:+2136274 | MS.gene026015:CDS |
TGCTAGCAATTTAGGAACCA+CGG | 0.556932 | 7.1:+2138898 | MS.gene026015:CDS |
AGTCTATGTTGGATGAAGCT+AGG | 0.562469 | 7.1:+2143116 | MS.gene026015:CDS |
TAGATACCGGACTAGGAGAC+AGG | 0.562946 | 7.1:-2136464 | None:intergenic |
TTCCTCAACGCTGCTCGTAC+CGG | 0.562981 | 7.1:+2138514 | MS.gene026015:CDS |
ATTCAAATAGAAGTCTATGT+TGG | 0.563771 | 7.1:+2143105 | MS.gene026015:CDS |
TCTTGGAAGATTTGTAACCC+AGG | 0.564321 | 7.1:+2136567 | MS.gene026015:CDS |
AAAGTAAATGTTAGTGCTGG+TGG | 0.569289 | 7.1:+2140866 | MS.gene026015:CDS |
GAACACCAGGAGACATGGCA+TGG | 0.570374 | 7.1:+2136265 | MS.gene026015:CDS |
ACAGGAACATTCTGATCAGA+AGG | 0.570710 | 7.1:+2136185 | MS.gene026015:CDS |
CTTGAGCATTTGCTGTCCAG+AGG | 0.572302 | 7.1:+2139282 | MS.gene026015:CDS |
TCCAAAGCTTGTTATAGGGA+AGG | 0.574646 | 7.1:+2143197 | MS.gene026015:CDS |
CTGCAACAGATGAAATGAGT+GGG | 0.576458 | 7.1:-2140121 | None:intergenic |
GTGTGGAACACCAGGAGACA+TGG | 0.578541 | 7.1:+2136260 | MS.gene026015:CDS |
GTCGACAAACTCAACGTAGG+AGG | 0.579261 | 7.1:+2136298 | MS.gene026015:CDS |
GCAAAATATAGATCAAGAGC+CGG | 0.579769 | 7.1:-2136429 | None:intergenic |
CCTAAATTGCTAGCAATGGT+AGG | 0.580362 | 7.1:-2138890 | None:intergenic |
ATCCCATCAATAGTCCAAGA+AGG | 0.585457 | 7.1:-2141345 | None:intergenic |
CAGCAGAATCAAAATCAAGA+GGG | 0.593887 | 7.1:+2142750 | MS.gene026015:CDS |
ATCAGTTCCTGCTTTCAACA+GGG | 0.598606 | 7.1:-2140942 | None:intergenic |
GTAGGTGTAGATACCGGACT+AGG | 0.601321 | 7.1:-2136471 | None:intergenic |
CCCAATGCTGAAACTGATGA+TGG | 0.604551 | 7.1:+2140092 | MS.gene026015:CDS |
TTATCAGCTGCAATGTGCAA+AGG | 0.606996 | 7.1:-2140896 | None:intergenic |
GTAGAGCATTAAGACCAGAT+TGG | 0.608756 | 7.1:+2143174 | MS.gene026015:CDS |
GGTTCCTAAATTGCTAGCAA+TGG | 0.609817 | 7.1:-2138894 | None:intergenic |
CTGCCTAACTGCAAGTGCGT+CGG | 0.612225 | 7.1:-2138479 | None:intergenic |
AAGTGATTCGGGAACACCGT+TGG | 0.612822 | 7.1:+2139323 | MS.gene026015:CDS |
TGCCGGTACGAGCAGCGTTG+AGG | 0.612947 | 7.1:-2138516 | None:intergenic |
AAACAGCAGCATCCACAGAC+CGG | 0.613311 | 7.1:-2142120 | None:intergenic |
TGCGTTGTAGGTGTAGATAC+CGG | 0.613366 | 7.1:-2136477 | None:intergenic |
ATCAATAAGATACTTAGCAG+TGG | 0.617709 | 7.1:-2138855 | None:intergenic |
ACATTCTGATCAGAAGGCAG+AGG | 0.617952 | 7.1:+2136191 | MS.gene026015:CDS |
GCAGCAGAATCAAAATCAAG+AGG | 0.620760 | 7.1:+2142749 | MS.gene026015:CDS |
GCTAAAGTAAATGTTAGTGC+TGG | 0.624109 | 7.1:+2140863 | MS.gene026015:CDS |
TGACCAGCAGCCCAAACCAA+CGG | 0.624815 | 7.1:-2139339 | None:intergenic |
ACATGCCAGCAACAAACGCA+AGG | 0.626173 | 7.1:-2143225 | None:intergenic |
CAAAGATTTATCCAAAACAG+TGG | 0.629444 | 7.1:+2138667 | MS.gene026015:CDS |
GCAGGCTTTAGCTGATGCAA+AGG | 0.635071 | 7.1:+2143148 | MS.gene026015:CDS |
GAATCAACAATGCTACCAGT+AGG | 0.635740 | 7.1:-2136540 | None:intergenic |
ATTGATTTGAATCCCAGCGA+TGG | 0.637054 | 7.1:+2143074 | MS.gene026015:CDS |
ATTAAAGATGCAAACAAGCG+TGG | 0.639246 | 7.1:+2138695 | MS.gene026015:CDS |
GCAGCTGGAAGGGGAAATCG+TGG | 0.646088 | 7.1:+2141276 | MS.gene026015:CDS |
TAAAGAAAATAACCGGTCTG+TGG | 0.653075 | 7.1:+2142108 | MS.gene026015:CDS |
AGCAGAATGATGCAAAGCCG+TGG | 0.654699 | 7.1:-2138915 | None:intergenic |
TCGCAATAGACGAAGATGAA+CGG | 0.657250 | 7.1:-2136515 | None:intergenic |
GCTGCAACAGATGAAATGAG+TGG | 0.659045 | 7.1:-2140122 | None:intergenic |
ACAAAGCAACTATCAATGTG+TGG | 0.659661 | 7.1:+2136243 | MS.gene026015:CDS |
AATTAATATTATGAGTAGCG+AGG | 0.661289 | 7.1:+2136098 | None:intergenic |
AGCAGAATCAAAATCAAGAG+GGG | 0.665063 | 7.1:+2142751 | MS.gene026015:CDS |
AACACCAGGAGACATGGCAT+GGG | 0.674784 | 7.1:+2136266 | MS.gene026015:CDS |
ATTTGCGGAACAATTAGACG+AGG | 0.679877 | 7.1:+2138643 | MS.gene026015:CDS |
TTTGCGGAACAATTAGACGA+GGG | 0.690385 | 7.1:+2138644 | MS.gene026015:CDS |
GTCACTGTTCTATTAAAACA+TGG | 0.691599 | 7.1:+2139378 | MS.gene026015:CDS |
TGCAACAGATGAAATGAGTG+GGG | 0.693780 | 7.1:-2140120 | None:intergenic |
AGCGAGGAAATAGAGTTACA+GGG | 0.695690 | 7.1:+2136114 | MS.gene026015:CDS |
TGATCCTAATGTCTCTGACG+AGG | 0.709103 | 7.1:+2140961 | MS.gene026015:CDS |
GAAGATCTAAATGAGCTCAG+AGG | 0.722824 | 7.1:+2136345 | MS.gene026015:CDS |
GGCGTCGACAAACTCAACGT+AGG | 0.748571 | 7.1:+2136295 | MS.gene026015:CDS |
TCGAGAGCAAAATATCCCTG+AGG | 0.758992 | 7.1:+2142144 | MS.gene026015:CDS |
GAGGAAATAGAGTTACAGGG+AGG | 0.768483 | 7.1:+2136117 | MS.gene026015:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 2136108 | 2143772 | 2136108 | ID=MS.gene026015 |
chr7.1 | mRNA | 2136108 | 2143772 | 2136108 | ID=MS.gene026015.t1;Parent=MS.gene026015 |
chr7.1 | exon | 2136108 | 2136588 | 2136108 | ID=MS.gene026015.t1.exon1;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2136108 | 2136588 | 2136108 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2137014 | 2137075 | 2137014 | ID=MS.gene026015.t1.exon2;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2137014 | 2137075 | 2137014 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2138451 | 2138556 | 2138451 | ID=MS.gene026015.t1.exon3;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2138451 | 2138556 | 2138451 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2138642 | 2138761 | 2138642 | ID=MS.gene026015.t1.exon4;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2138642 | 2138761 | 2138642 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2138810 | 2138944 | 2138810 | ID=MS.gene026015.t1.exon5;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2138810 | 2138944 | 2138810 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2139268 | 2139407 | 2139268 | ID=MS.gene026015.t1.exon6;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2139268 | 2139407 | 2139268 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2140092 | 2140178 | 2140092 | ID=MS.gene026015.t1.exon7;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2140092 | 2140178 | 2140092 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2140857 | 2140982 | 2140857 | ID=MS.gene026015.t1.exon8;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2140857 | 2140982 | 2140857 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2141252 | 2141404 | 2141252 | ID=MS.gene026015.t1.exon9;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2141252 | 2141404 | 2141252 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2142091 | 2142165 | 2142091 | ID=MS.gene026015.t1.exon10;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2142091 | 2142165 | 2142091 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2142725 | 2142826 | 2142725 | ID=MS.gene026015.t1.exon11;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2142725 | 2142826 | 2142725 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2143071 | 2143234 | 2143071 | ID=MS.gene026015.t1.exon12;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2143071 | 2143234 | 2143071 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2143334 | 2143411 | 2143334 | ID=MS.gene026015.t1.exon13;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2143334 | 2143411 | 2143334 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
chr7.1 | exon | 2143718 | 2143772 | 2143718 | ID=MS.gene026015.t1.exon14;Parent=MS.gene026015.t1 |
chr7.1 | CDS | 2143718 | 2143772 | 2143718 | ID=cds.MS.gene026015.t1;Parent=MS.gene026015.t1 |
Gene Sequence |
Protein sequence |