AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42267

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42267.t1 MTR_3g082890 67.247 287 75 5 1 271 157 440 4.85e-117 345
MS.gene42267.t1 MTR_3g082890 58.951 324 77 6 1 271 77 397 5.15e-110 325
MS.gene42267.t1 MTR_3g113770 63.679 212 13 3 58 268 179 327 1.05e-79 244
MS.gene42267.t1 MTR_2g020180 59.116 181 47 2 104 271 5 171 3.32e-58 185
MS.gene42267.t1 MTR_7g098510 38.662 269 150 10 1 265 81 338 6.46e-48 164
MS.gene42267.t1 MTR_7g098570 37.545 277 148 11 1 268 83 343 2.39e-45 159
MS.gene42267.t1 MTR_1g041245 38.811 286 157 12 1 280 74 347 4.26e-45 156
MS.gene42267.t1 MTR_7g081290 77.083 96 15 2 170 263 116 206 1.43e-44 152
MS.gene42267.t1 MTR_7g034120 35.959 292 160 13 1 282 1 275 9.08e-39 138
MS.gene42267.t1 MTR_0492s0020 36.101 277 159 10 4 280 152 410 1.42e-38 140
MS.gene42267.t1 MTR_0543s0010 36.101 277 159 10 4 280 152 410 2.16e-38 140
MS.gene42267.t1 MTR_3g040700 34.686 271 151 8 1 266 106 355 2.36e-38 140
MS.gene42267.t1 MTR_7g098480 34.201 269 160 9 4 268 84 339 3.89e-37 137
MS.gene42267.t1 MTR_3g036250 33.818 275 149 10 1 266 68 318 1.75e-36 133
MS.gene42267.t1 MTR_7g033990 37.050 278 148 11 1 268 74 334 2.62e-34 129
MS.gene42267.t1 MTR_7g032370 36.502 263 142 9 4 262 56 297 2.82e-34 127
MS.gene42267.t1 MTR_3g113785 75.000 88 20 1 186 271 1 88 3.09e-34 120
MS.gene42267.t1 MTR_7g056433 34.173 278 160 11 1 268 75 339 9.69e-31 119
MS.gene42267.t1 MTR_7g088260 33.948 271 157 12 1 264 154 409 2.80e-30 118
MS.gene42267.t1 MTR_7g034115 34.307 274 161 9 1 268 74 334 6.88e-30 116
MS.gene42267.t1 MTR_3g114200 75.342 73 18 0 1 73 83 155 1.43e-29 110
MS.gene42267.t1 MTR_7g033915 32.130 277 145 11 1 268 74 316 6.65e-29 113
MS.gene42267.t1 MTR_3g023630 29.963 267 164 6 4 264 75 324 3.68e-28 111
MS.gene42267.t1 MTR_3g108560 31.387 274 163 9 1 268 83 337 3.30e-27 109
MS.gene42267.t1 MTR_7g115270 30.986 284 160 10 1 261 75 345 2.29e-26 107
MS.gene42267.t1 MTR_3g108150 33.209 268 157 11 3 262 78 331 1.19e-25 104
MS.gene42267.t1 MTR_7g032380 32.046 259 129 8 10 262 84 301 1.75e-25 103
MS.gene42267.t1 MTR_5g012840 32.963 270 116 11 1 262 52 264 2.25e-24 100
MS.gene42267.t1 MTR_5g008950 30.000 230 146 8 53 280 111 327 6.19e-24 100
MS.gene42267.t1 MTR_5g013500 30.108 279 150 10 1 262 58 308 1.19e-23 99.0
MS.gene42267.t1 MTR_3g105060 29.368 269 160 8 4 266 81 325 5.44e-23 97.4
MS.gene42267.t1 MTR_5g008920 29.707 239 154 6 42 280 119 343 1.64e-22 96.3
MS.gene42267.t1 MTR_7g056430 32.222 270 141 9 1 261 72 308 6.81e-22 95.9
MS.gene42267.t1 MTR_7g056420 32.222 270 141 9 1 261 72 308 7.41e-22 95.9
MS.gene42267.t1 MTR_3g115430 50.575 87 36 2 186 271 1 81 8.65e-22 88.6
MS.gene42267.t1 MTR_2g007450 28.782 271 147 9 26 264 115 371 1.62e-21 93.6
MS.gene42267.t1 MTR_3g109982 35.371 229 132 10 55 280 220 435 2.95e-21 94.0
MS.gene42267.t1 MTR_3g109982 29.694 229 143 9 1 226 76 289 1.21e-12 68.2
MS.gene42267.t1 MTR_7g007080 31.557 244 147 8 26 264 103 331 6.43e-21 91.7
MS.gene42267.t1 MTR_3g087260 36.283 226 111 10 55 268 201 405 6.65e-21 92.0
MS.gene42267.t1 MTR_7g056020 29.779 272 162 12 3 268 74 322 1.13e-20 92.0
MS.gene42267.t1 MTR_2g007500 30.000 260 141 11 26 262 91 332 6.58e-20 88.2
MS.gene42267.t1 MTR_1g053025 26.990 289 165 13 1 262 69 338 7.22e-20 88.6
MS.gene42267.t1 MTR_7g055943 29.924 264 142 10 9 255 115 352 2.67e-19 87.4
MS.gene42267.t1 MTR_7g034110 28.727 275 132 11 1 266 74 293 3.28e-19 86.7
MS.gene42267.t1 MTR_4g098590 28.727 275 150 11 15 262 76 331 8.73e-19 85.5
MS.gene42267.t1 MTR_6g022500 30.337 267 151 13 9 262 176 420 1.30e-18 85.5
MS.gene42267.t1 MTR_7g056277 28.030 264 156 11 16 268 338 578 2.09e-18 85.5
MS.gene42267.t1 MTR_3g108560 30.837 227 139 7 1 221 83 297 7.59e-18 82.0
MS.gene42267.t1 MTR_1g085120 27.106 273 156 9 9 262 167 415 8.68e-18 83.2
MS.gene42267.t1 MTR_1g085120 27.106 273 156 9 9 262 242 490 1.43e-17 82.8
MS.gene42267.t1 MTR_1g108800 33.953 215 111 8 58 262 93 286 1.54e-17 81.6
MS.gene42267.t1 MTR_3g467400 29.889 271 142 10 9 264 76 313 2.82e-17 81.3
MS.gene42267.t1 MTR_3g026920 24.756 307 158 8 1 264 85 361 3.19e-17 81.3
MS.gene42267.t1 MTR_3g107120 28.750 240 150 9 31 264 119 343 5.07e-17 80.5
MS.gene42267.t1 MTR_1g107385 28.169 213 138 7 54 260 165 368 9.69e-17 80.1
MS.gene42267.t1 MTR_1g108820 30.870 230 120 11 53 263 121 330 1.09e-16 79.7
MS.gene42267.t1 MTR_6g045333 29.057 265 163 7 10 262 139 390 2.16e-16 79.0
MS.gene42267.t1 MTR_2g008320 30.516 213 121 7 58 260 176 371 2.63e-16 79.0
MS.gene42267.t1 MTR_3g107160 27.984 243 150 8 31 264 109 335 3.73e-16 78.2
MS.gene42267.t1 MTR_7g026500 29.749 279 147 15 9 263 89 342 1.91e-15 76.3
MS.gene42267.t1 MTR_7g114710 30.476 210 107 8 63 267 141 316 2.04e-15 75.9
MS.gene42267.t1 MTR_3g107100 28.395 243 147 9 31 262 107 333 3.22e-15 75.5
MS.gene42267.t1 MTR_4g134150 34.857 175 93 7 1 170 73 231 5.39e-15 72.8
MS.gene42267.t1 MTR_5g045170 30.544 239 146 8 31 262 110 335 6.86e-15 74.3
MS.gene42267.t1 MTR_5g083890 28.378 222 129 8 54 260 141 347 9.22e-15 74.3
MS.gene42267.t1 MTR_3g071850 26.592 267 167 8 10 262 102 353 1.43e-14 73.9
MS.gene42267.t1 MTR_2g007400 30.594 219 129 8 57 264 147 353 1.81e-14 73.2
MS.gene42267.t1 MTR_2g020170 67.308 52 17 0 1 52 88 139 2.73e-14 68.9
MS.gene42267.t1 MTR_4g080610 29.730 185 116 6 85 262 125 302 4.28e-14 72.0
MS.gene42267.t1 MTR_5g073370 26.160 237 154 8 27 255 95 318 4.93e-14 72.0
MS.gene42267.t1 MTR_6g011460 28.517 263 162 9 4 259 116 359 7.52e-14 71.6
MS.gene42267.t1 MTR_5g058000 28.682 258 160 9 9 263 83 319 8.29e-14 71.2
MS.gene42267.t1 MTR_5g073420 27.234 235 144 9 31 262 111 321 8.93e-14 71.2
MS.gene42267.t1 MTR_5g073340 27.092 251 160 8 22 262 71 308 1.14e-13 70.1
MS.gene42267.t1 MTR_6g022520 28.470 281 158 13 1 262 1 257 2.17e-13 69.7
MS.gene42267.t1 MTR_2g008310 29.108 213 123 7 58 260 122 316 1.18e-12 67.8
MS.gene42267.t1 MTR_7g083740 29.348 184 113 7 78 255 135 307 2.22e-12 67.0
MS.gene42267.t1 MTR_7g060470 25.573 262 152 11 23 261 97 338 2.43e-12 67.0
MS.gene42267.t1 MTR_7g075820 27.103 214 134 6 54 260 141 339 3.74e-12 66.2
MS.gene42267.t1 MTR_6g022360 26.592 267 164 9 9 262 105 352 5.16e-12 65.9
MS.gene42267.t1 MTR_5g058100 29.213 267 153 11 9 262 84 327 5.35e-12 65.9
MS.gene42267.t1 MTR_6g040270 26.941 219 126 8 55 262 127 322 8.31e-12 65.1
MS.gene42267.t1 MTR_5g054920 41.860 86 39 3 178 262 79 154 9.65e-12 63.2
MS.gene42267.t1 MTR_1g085120 25.862 232 136 7 9 221 254 468 2.10e-11 64.3
MS.gene42267.t1 MTR_4g039440 27.636 275 166 11 1 260 95 351 2.19e-11 63.9
MS.gene42267.t1 MTR_7g007340 27.885 208 136 4 54 260 107 301 3.48e-11 63.2
MS.gene42267.t1 MTR_7g056447 30.882 136 87 5 1 133 72 203 3.55e-11 62.8
MS.gene42267.t1 MTR_3g099830 28.782 271 163 9 4 260 64 318 4.41e-11 63.2
MS.gene42267.t1 MTR_2g005990 29.302 215 130 8 55 260 138 339 6.68e-11 62.8
MS.gene42267.t1 MTR_1g043180 48.438 64 31 2 163 224 32 95 7.30e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 63 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTTGTCTGCTGCTGTTT+TGG 0.150749 3.2:-90220560 None:intergenic
GCTCTTATCCTTTCCCATTC+TGG 0.166440 3.2:+90220495 MS.gene42267:CDS
AAGCTTAGGTGTCACTAAAT+TGG 0.237613 3.2:-90220593 None:intergenic
AGGCATTCCGGAACAATCTT+TGG 0.251117 3.2:-90221087 None:intergenic
CTTACTGTTCTCAAAATAAA+AGG 0.284666 3.2:+90220364 MS.gene42267:CDS
CTTCCAACATATTCACTTGT+AGG 0.295079 3.2:+90220338 MS.gene42267:CDS
AGAATCCACATCCACTTCTT+AGG 0.312467 3.2:-90220854 None:intergenic
GTTTACAGGAGATTGAAAAT+AGG 0.337889 3.2:+90221022 MS.gene42267:intron
ATGATGATGATGAGGACATT+TGG 0.351175 3.2:+90221058 MS.gene42267:CDS
GTCTTTATTTACCAAATCAT+AGG 0.352378 3.2:+90220458 MS.gene42267:CDS
TGATGATGATGAGGACATTT+GGG 0.367705 3.2:+90221059 MS.gene42267:CDS
AGCCGAGAGGAAAGGCATTC+CGG 0.369666 3.2:-90221099 None:intergenic
TTTGTATTGCTGCAGTAATA+AGG 0.369701 3.2:-90220258 None:intergenic
ATGATAAGATGTTGAAGCTT+TGG 0.379176 3.2:-90220896 None:intergenic
AATGGGGACTTGGACACAAT+GGG 0.380126 3.2:-90220777 None:intergenic
GGAGGACCCAAAGATTGTTC+CGG 0.403048 3.2:+90221080 MS.gene42267:CDS
GGCATTCCGGAACAATCTTT+GGG 0.405579 3.2:-90221086 None:intergenic
AGCTTAGGTGTCACTAAATT+GGG 0.406335 3.2:-90220592 None:intergenic
GGAGCTATTCTCTAACTTAG+AGG 0.410241 3.2:+90220820 MS.gene42267:CDS
TCCTTTCTTCTTGCTTTCCA+AGG 0.413158 3.2:+90220633 MS.gene42267:CDS
GAAATATTATTATTTATTTG+AGG 0.414448 3.2:-90220409 None:intergenic
TTCCGGAATGCCTTTCCTCT+CGG 0.420426 3.2:+90221097 MS.gene42267:CDS
TAAACAACGTGTTAAGTTCA+AGG 0.426836 3.2:-90220294 None:intergenic
TTGAAGCGGAATGATCTTAT+CGG 0.428039 3.2:-90220196 None:intergenic
GTTTGCAATTCCTCCAGAAT+GGG 0.444342 3.2:-90220508 None:intergenic
GAATGTCATCCATGATTGAT+AGG 0.450517 3.2:-90220387 None:intergenic
AATAAAAGGCCTATCAATCA+TGG 0.455518 3.2:+90220378 MS.gene42267:CDS
ATTGAAAATAGGATAGAGAA+TGG 0.461123 3.2:+90221033 MS.gene42267:CDS
TTGATGATATGCCTATGATT+TGG 0.462421 3.2:-90220469 None:intergenic
TGTTTGCAATTCCTCCAGAA+TGG 0.463199 3.2:-90220509 None:intergenic
AATATAAGTTTACATCCCCT+TGG 0.475469 3.2:-90221285 None:intergenic
GAGATAATTTCTGTAACATC+TGG 0.480168 3.2:-90221257 None:intergenic
TTAAGAATTATCGAGGCAAA+AGG 0.480305 3.2:+90221136 MS.gene42267:CDS
AAATGGGGACTTGGACACAA+TGG 0.507351 3.2:-90220778 None:intergenic
TTTCTGTAACATCTGGTGCT+TGG 0.511968 3.2:-90221250 None:intergenic
AGAAATTATCTCTGTATCCA+AGG 0.512166 3.2:+90221268 MS.gene42267:CDS
TATACTGAGACTCCGTGCCT+TGG 0.519885 3.2:-90220650 None:intergenic
GCCTTGGAAAGCAAGAAGAA+AGG 0.521530 3.2:-90220634 None:intergenic
ATAAGGTCAGTGATATCGTT+GGG 0.524534 3.2:-90220241 None:intergenic
TCTTCTTGCTTTCCAAGGCA+CGG 0.529546 3.2:+90220638 MS.gene42267:CDS
TCAACATCTTATCATTCAAG+AGG 0.533314 3.2:+90220904 MS.gene42267:CDS
GAAATTATCTCTGTATCCAA+GGG 0.539081 3.2:+90221269 MS.gene42267:CDS
AAACAACGTGTTAAGTTCAA+GGG 0.539729 3.2:-90220293 None:intergenic
CTTATCCTTTCCCATTCTGG+AGG 0.544696 3.2:+90220498 MS.gene42267:CDS
CAATTCCTCCAGAATGGGAA+AGG 0.550441 3.2:-90220503 None:intergenic
ACTGATCAAAACTCTCCACT+TGG 0.553083 3.2:+90220432 MS.gene42267:CDS
ATCTAAGACAATATTTGAAG+CGG 0.554999 3.2:-90220210 None:intergenic
GCTGGCCTAAGAAGTGGATG+TGG 0.565846 3.2:+90220849 MS.gene42267:CDS
GCTTTGCTATCAGAAAGCTT+AGG 0.567563 3.2:-90220607 None:intergenic
ACGGAGTCTCAGTATAAAGC+TGG 0.569922 3.2:+90220657 MS.gene42267:CDS
GTAAAAGCTGGCCTAAGAAG+TGG 0.574375 3.2:+90220843 MS.gene42267:CDS
GGTCAGTGATATCGTTGGGT+TGG 0.576883 3.2:-90220237 None:intergenic
CGTCCTACAAGTGAATATGT+TGG 0.577132 3.2:-90220341 None:intergenic
AATAAGGTCAGTGATATCGT+TGG 0.578043 3.2:-90220242 None:intergenic
GAGCTATTCTCTAACTTAGA+GGG 0.583276 3.2:+90220821 MS.gene42267:CDS
ATCAAAACTCTCCACTTGGA+TGG 0.585019 3.2:+90220436 MS.gene42267:CDS
TGCTTGTTTAAGAATTATCG+AGG 0.609422 3.2:+90221129 MS.gene42267:CDS
CTAACTTAGAGGGTAAAAGC+TGG 0.615677 3.2:+90220831 MS.gene42267:CDS
GTAAATAAAGACCATCCAAG+TGG 0.641684 3.2:-90220447 None:intergenic
GAATGGAAATGATGATGATG+AGG 0.647441 3.2:+90221050 MS.gene42267:CDS
ATGGGGACTTGGACACAATG+GGG 0.653399 3.2:-90220776 None:intergenic
AAATTATCTCTGTATCCAAG+GGG 0.713669 3.2:+90221270 MS.gene42267:CDS
TGATGATGAGGACATTTGGG+AGG 0.744368 3.2:+90221062 MS.gene42267:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATATTATTATTTATTTG+AGG - chr3.2:90220412-90220431 None:intergenic 10.0%
!! GAAATTTACTTATTGTTTAC+AGG + chr3.2:90221008-90221027 MS.gene42267:intron 20.0%
!! TGAGTTAGATTGTAAAAAAT+GGG - chr3.2:90220797-90220816 None:intergenic 20.0%
!! TTGAGTTAGATTGTAAAAAA+TGG - chr3.2:90220798-90220817 None:intergenic 20.0%
!!! TAACTTTTGTTTCTTGTTTT+GGG + chr3.2:90220983-90221002 MS.gene42267:intron 20.0%
!!! TTAACTTTTGTTTCTTGTTT+TGG + chr3.2:90220982-90221001 MS.gene42267:intron 20.0%
!!! TTTTTACAATCTAACTCAAA+TGG + chr3.2:90220799-90220818 MS.gene42267:CDS 20.0%
! ACAAAAGTTAAGATATGTAG+AGG - chr3.2:90220973-90220992 None:intergenic 25.0%
! ATTGAAAATAGGATAGAGAA+TGG + chr3.2:90221033-90221052 MS.gene42267:CDS 25.0%
! CTTACTGTTCTCAAAATAAA+AGG + chr3.2:90220364-90220383 MS.gene42267:CDS 25.0%
! GAGTTAGATTGTAAAAAATG+GGG - chr3.2:90220796-90220815 None:intergenic 25.0%
!! ATCTAAGACAATATTTGAAG+CGG - chr3.2:90220213-90220232 None:intergenic 25.0%
!! GTCTTTATTTACCAAATCAT+AGG + chr3.2:90220458-90220477 MS.gene42267:CDS 25.0%
AAACAACGTGTTAAGTTCAA+GGG - chr3.2:90220296-90220315 None:intergenic 30.0%
AAATTATCTCTGTATCCAAG+GGG + chr3.2:90221270-90221289 MS.gene42267:CDS 30.0%
AATAAAAGGCCTATCAATCA+TGG + chr3.2:90220378-90220397 MS.gene42267:CDS 30.0%
AGAAATTATCTCTGTATCCA+AGG + chr3.2:90221268-90221287 MS.gene42267:CDS 30.0%
ATGATAAGATGTTGAAGCTT+TGG - chr3.2:90220899-90220918 None:intergenic 30.0%
GAAATTATCTCTGTATCCAA+GGG + chr3.2:90221269-90221288 MS.gene42267:CDS 30.0%
GAGATAATTTCTGTAACATC+TGG - chr3.2:90221260-90221279 None:intergenic 30.0%
GTTTACAGGAGATTGAAAAT+AGG + chr3.2:90221022-90221041 MS.gene42267:intron 30.0%
TAAACAACGTGTTAAGTTCA+AGG - chr3.2:90220297-90220316 None:intergenic 30.0%
TCAACATCTTATCATTCAAG+AGG + chr3.2:90220904-90220923 MS.gene42267:CDS 30.0%
TGCTTGTTTAAGAATTATCG+AGG + chr3.2:90221129-90221148 MS.gene42267:CDS 30.0%
TTAAGAATTATCGAGGCAAA+AGG + chr3.2:90221136-90221155 MS.gene42267:CDS 30.0%
TTTGTATTGCTGCAGTAATA+AGG - chr3.2:90220261-90220280 None:intergenic 30.0%
! TTGATGATATGCCTATGATT+TGG - chr3.2:90220472-90220491 None:intergenic 30.0%
AATAAGGTCAGTGATATCGT+TGG - chr3.2:90220245-90220264 None:intergenic 35.0%
ATAAGGTCAGTGATATCGTT+GGG - chr3.2:90220244-90220263 None:intergenic 35.0%
CTTCCAACATATTCACTTGT+AGG + chr3.2:90220338-90220357 MS.gene42267:CDS 35.0%
CTTTGTAATTCATGCAGACA+TGG + chr3.2:90220753-90220772 MS.gene42267:intron 35.0%
GAATGTCATCCATGATTGAT+AGG - chr3.2:90220390-90220409 None:intergenic 35.0%
GAGCTATTCTCTAACTTAGA+GGG + chr3.2:90220821-90220840 MS.gene42267:CDS 35.0%
GATTGTAAAAAATGGGGACT+TGG - chr3.2:90220790-90220809 None:intergenic 35.0%
GTAAATAAAGACCATCCAAG+TGG - chr3.2:90220450-90220469 None:intergenic 35.0%
GTGCTTGGCATTTAAATCTA+TGG - chr3.2:90221238-90221257 None:intergenic 35.0%
TTGAAGCGGAATGATCTTAT+CGG - chr3.2:90220199-90220218 None:intergenic 35.0%
! ATGATGATGATGAGGACATT+TGG + chr3.2:90221058-90221077 MS.gene42267:CDS 35.0%
! GAATGGAAATGATGATGATG+AGG + chr3.2:90221050-90221069 MS.gene42267:CDS 35.0%
! TGATGATGATGAGGACATTT+GGG + chr3.2:90221059-90221078 MS.gene42267:CDS 35.0%
!! AAGCTTAGGTGTCACTAAAT+TGG - chr3.2:90220596-90220615 None:intergenic 35.0%
!! AGCTTAGGTGTCACTAAATT+GGG - chr3.2:90220595-90220614 None:intergenic 35.0%
!!! CTTTTGTTTCTTGTTTTGGG+TGG + chr3.2:90220986-90221005 MS.gene42267:intron 35.0%
ACTGATCAAAACTCTCCACT+TGG + chr3.2:90220432-90220451 MS.gene42267:CDS 40.0%
AGAATCCACATCCACTTCTT+AGG - chr3.2:90220857-90220876 None:intergenic 40.0%
ATCAAAACTCTCCACTTGGA+TGG + chr3.2:90220436-90220455 MS.gene42267:CDS 40.0%
CGTCCTACAAGTGAATATGT+TGG - chr3.2:90220344-90220363 None:intergenic 40.0%
CTAACTTAGAGGGTAAAAGC+TGG + chr3.2:90220831-90220850 MS.gene42267:CDS 40.0%
GGAGCTATTCTCTAACTTAG+AGG + chr3.2:90220820-90220839 MS.gene42267:CDS 40.0%
GTTTGCAATTCCTCCAGAAT+GGG - chr3.2:90220511-90220530 None:intergenic 40.0%
TCCTTTCTTCTTGCTTTCCA+AGG + chr3.2:90220633-90220652 MS.gene42267:CDS 40.0%
TGTTTGCAATTCCTCCAGAA+TGG - chr3.2:90220512-90220531 None:intergenic 40.0%
TTTCTGTAACATCTGGTGCT+TGG - chr3.2:90221253-90221272 None:intergenic 40.0%
! GCTTTGCTATCAGAAAGCTT+AGG - chr3.2:90220610-90220629 None:intergenic 40.0%
!!! ATCTTGTCTGCTGCTGTTTT+GGG - chr3.2:90220562-90220581 None:intergenic 40.0%
AAATGGGGACTTGGACACAA+TGG - chr3.2:90220781-90220800 None:intergenic 45.0%
AATGGGGACTTGGACACAAT+GGG - chr3.2:90220780-90220799 None:intergenic 45.0%
ACGGAGTCTCAGTATAAAGC+TGG + chr3.2:90220657-90220676 MS.gene42267:CDS 45.0%
AGGCATTCCGGAACAATCTT+TGG - chr3.2:90221090-90221109 None:intergenic 45.0%
CAATTCCTCCAGAATGGGAA+AGG - chr3.2:90220506-90220525 None:intergenic 45.0%
CTTATCCTTTCCCATTCTGG+AGG + chr3.2:90220498-90220517 MS.gene42267:CDS 45.0%
GCCTTGGAAAGCAAGAAGAA+AGG - chr3.2:90220637-90220656 None:intergenic 45.0%
GCTCTTATCCTTTCCCATTC+TGG + chr3.2:90220495-90220514 MS.gene42267:CDS 45.0%
GGCATTCCGGAACAATCTTT+GGG - chr3.2:90221089-90221108 None:intergenic 45.0%
TCTTCTTGCTTTCCAAGGCA+CGG + chr3.2:90220638-90220657 MS.gene42267:CDS 45.0%
! GTAAAAGCTGGCCTAAGAAG+TGG + chr3.2:90220843-90220862 MS.gene42267:CDS 45.0%
! TGATGATGAGGACATTTGGG+AGG + chr3.2:90221062-90221081 MS.gene42267:CDS 45.0%
!! GATCTTGTCTGCTGCTGTTT+TGG - chr3.2:90220563-90220582 None:intergenic 45.0%
!!! AAGTTTTGAGCCGAGAGGAA+AGG - chr3.2:90221110-90221129 None:intergenic 45.0%
ATGGGGACTTGGACACAATG+GGG - chr3.2:90220779-90220798 None:intergenic 50.0%
GGAGGACCCAAAGATTGTTC+CGG + chr3.2:90221080-90221099 MS.gene42267:CDS 50.0%
GGTCAGTGATATCGTTGGGT+TGG - chr3.2:90220240-90220259 None:intergenic 50.0%
TATACTGAGACTCCGTGCCT+TGG - chr3.2:90220653-90220672 None:intergenic 50.0%
TTCCGGAATGCCTTTCCTCT+CGG + chr3.2:90221097-90221116 MS.gene42267:CDS 50.0%
!!! CAAGCAAGTTTTGAGCCGAG+AGG - chr3.2:90221115-90221134 None:intergenic 50.0%
!!! TCTGCTGCTGTTTTGGGAAC+AGG - chr3.2:90220556-90220575 None:intergenic 50.0%
! GCTGGCCTAAGAAGTGGATG+TGG + chr3.2:90220849-90220868 MS.gene42267:CDS 55.0%
!! AGCCGAGAGGAAAGGCATTC+CGG - chr3.2:90221102-90221121 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 90220172 90221298 90220172 ID=MS.gene42267
chr3.2 mRNA 90220172 90221298 90220172 ID=MS.gene42267.t1;Parent=MS.gene42267
chr3.2 exon 90220172 90220678 90220172 ID=MS.gene42267.t1.exon1;Parent=MS.gene42267.t1
chr3.2 CDS 90220172 90220678 90220172 ID=cds.MS.gene42267.t1;Parent=MS.gene42267.t1
chr3.2 exon 90220770 90220925 90220770 ID=MS.gene42267.t1.exon2;Parent=MS.gene42267.t1
chr3.2 CDS 90220770 90220925 90220770 ID=cds.MS.gene42267.t1;Parent=MS.gene42267.t1
chr3.2 exon 90221030 90221157 90221030 ID=MS.gene42267.t1.exon3;Parent=MS.gene42267.t1
chr3.2 CDS 90221030 90221157 90221030 ID=cds.MS.gene42267.t1;Parent=MS.gene42267.t1
chr3.2 exon 90221241 90221298 90221241 ID=MS.gene42267.t1.exon4;Parent=MS.gene42267.t1
chr3.2 CDS 90221241 90221298 90221241 ID=cds.MS.gene42267.t1;Parent=MS.gene42267.t1
Gene Sequence

>MS.gene42267

ATGCTATCGCGCGACAACACGCTGCCGATAAGATCATTCCGCTTCAAATATTGTCTTAGATACGACCAACCCAACGATATCACTGACCTTATTACTGCAGCAATACAAAGACGAACTGAAACCCTTGAACTTAACACGTTGTTTAATACTTTTGACATGAAATTAGCTTCCAACATATTCACTTGTAGGACGCTTACTGTTCTCAAAATAAAAGGCCTATCAATCATGGATGACATTCCTCAAATAAATAATAATATTTCACTGATCAAAACTCTCCACTTGGATGGTCTTTATTTACCAAATCATAGGCATATCATCAACTTGCTCTTATCCTTTCCCATTCTGGAGGAATTGCAAACAAATAATGTATATGTATTTAAACCTGTTCCCAAAACAGCAGCAGACAAGATCAAACGCTTACCCAATTTAGTGACACCTAAGCTTTCTGATAGCAAAGCTATTCCTTTCTTCTTGCTTTCCAAGGCACGGAGTCTCAGTATAAAGCTGGTAAGTAAGACTTTGTTTCATTTTACAAAACAAATCACAATATCATGATTGCTTTCTAATTTTCTGTCTGTCGTCTTTGTAATTCATGCAGACATGGCCCCATTGTGTCCAAGTCCCCATTTTTTACAATCTAACTCAAATGGAGCTATTCTCTAACTTAGAGGGTAAAAGCTGGCCTAAGAAGTGGATGTGGATTCTTGAAATGCTTCAACACAGTCCAAAGCTTCAACATCTTATCATTCAAGAGGTTTCACATATAATTTGATTCTATATTTATTTTGTTTAACTCTACCTCTACATATCTTAACTTTTGTTTCTTGTTTTGGGTGGAAATTTACTTATTGTTTACAGGAGATTGAAAATAGGATAGAGAATGGAAATGATGATGATGAGGACATTTGGGAGGACCCAAAGATTGTTCCGGAATGCCTTTCCTCTCGGCTCAAAACTTGCTTGTTTAAGAATTATCGAGGCAAAAGGTGCGAGCTTCAATTTGCAGAATATGTTATGCGCAGTTCAAAAGTATTAAGTAACATGACAATTCACAGTGCTTGTTCCATAGATTTAAATGCCAAGCACCAGATGTTACAGAAATTATCTCTGTATCCAAGGGGATGTAA
Protein sequence

>MS.gene42267.t1

MLSRDNTLPIRSFRFKYCLRYDQPNDITDLITAAIQRRTETLELNTLFNTFDMKLASNIFTCRTLTVLKIKGLSIMDDIPQINNNISLIKTLHLDGLYLPNHRHIINLLLSFPILEELQTNNVYVFKPVPKTAADKIKRLPNLVTPKLSDSKAIPFFLLSKARSLSIKLTWPHCVQVPIFYNLTQMELFSNLEGKSWPKKWMWILEMLQHSPKLQHLIIQEEIENRIENGNDDDEDIWEDPKIVPECLSSRLKTCLFKNYRGKRFKCQAPDVTEIISVSKGM