Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80861.t1 | AES78495.1 | 77.8 | 189 | 41 | 1 | 1 | 188 | 76 | 264 | 1.40E-76 | 295.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80861.t1 | Q94B46 | 34.5 | 113 | 71 | 2 | 9 | 121 | 86 | 195 | 1.9e-08 | 60.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80861.t1 | G7L5D4 | 77.8 | 189 | 41 | 1 | 1 | 188 | 76 | 264 | 1.0e-76 | 295.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80861.t1 | MTR_7g032380 | 77.778 | 189 | 41 | 1 | 1 | 188 | 76 | 264 | 1.58e-99 | 292 |
MS.gene80861.t1 | MTR_7g032370 | 71.014 | 207 | 40 | 4 | 1 | 188 | 55 | 260 | 1.96e-92 | 274 |
MS.gene80861.t1 | MTR_8g085430 | 58.115 | 191 | 40 | 2 | 2 | 192 | 85 | 235 | 8.01e-59 | 187 |
MS.gene80861.t1 | MTR_7g034115 | 50.718 | 209 | 74 | 4 | 9 | 188 | 83 | 291 | 7.52e-58 | 186 |
MS.gene80861.t1 | MTR_1g041245 | 47.248 | 218 | 82 | 6 | 2 | 188 | 77 | 292 | 2.96e-49 | 164 |
MS.gene80861.t1 | MTR_7g034110 | 41.885 | 191 | 94 | 6 | 4 | 188 | 75 | 254 | 6.62e-34 | 123 |
MS.gene80861.t1 | MTR_7g034120 | 37.327 | 217 | 99 | 7 | 9 | 190 | 10 | 224 | 2.37e-32 | 118 |
MS.gene80861.t1 | MTR_3g040700 | 38.863 | 211 | 103 | 7 | 2 | 189 | 109 | 316 | 7.09e-31 | 117 |
MS.gene80861.t1 | MTR_3g036250 | 38.389 | 211 | 104 | 6 | 2 | 189 | 71 | 278 | 7.05e-30 | 113 |
MS.gene80861.t1 | MTR_7g056433 | 35.780 | 218 | 100 | 8 | 8 | 188 | 83 | 297 | 7.39e-29 | 110 |
MS.gene80861.t1 | MTR_5g012840 | 39.429 | 175 | 89 | 5 | 23 | 191 | 69 | 232 | 1.31e-27 | 106 |
MS.gene80861.t1 | MTR_7g033990 | 37.037 | 216 | 95 | 7 | 9 | 188 | 83 | 293 | 1.69e-27 | 107 |
MS.gene80861.t1 | MTR_7g098510 | 34.842 | 221 | 105 | 9 | 2 | 188 | 84 | 299 | 4.02e-24 | 98.2 |
MS.gene80861.t1 | MTR_7g033915 | 33.023 | 215 | 87 | 7 | 9 | 188 | 83 | 275 | 4.66e-24 | 97.4 |
MS.gene80861.t1 | MTR_7g115270 | 33.755 | 237 | 103 | 8 | 2 | 188 | 78 | 310 | 4.74e-24 | 97.8 |
MS.gene80861.t1 | MTR_5g008950 | 34.259 | 216 | 103 | 8 | 7 | 188 | 63 | 273 | 7.88e-24 | 97.1 |
MS.gene80861.t1 | MTR_5g013500 | 33.621 | 232 | 89 | 10 | 2 | 188 | 61 | 272 | 5.76e-23 | 94.7 |
MS.gene80861.t1 | MTR_7g114710 | 35.079 | 191 | 114 | 4 | 7 | 189 | 84 | 272 | 6.70e-23 | 94.4 |
MS.gene80861.t1 | MTR_0492s0020 | 33.838 | 198 | 97 | 7 | 25 | 194 | 172 | 363 | 6.83e-23 | 95.1 |
MS.gene80861.t1 | MTR_0543s0010 | 33.838 | 198 | 97 | 7 | 25 | 194 | 172 | 363 | 8.03e-23 | 95.1 |
MS.gene80861.t1 | MTR_3g105060 | 33.175 | 211 | 100 | 5 | 9 | 187 | 87 | 288 | 9.09e-22 | 91.3 |
MS.gene80861.t1 | MTR_7g056420 | 35.294 | 204 | 109 | 9 | 1 | 188 | 74 | 270 | 1.33e-21 | 92.0 |
MS.gene80861.t1 | MTR_7g088260 | 34.389 | 221 | 107 | 10 | 1 | 188 | 156 | 371 | 1.38e-21 | 91.7 |
MS.gene80861.t1 | MTR_7g056430 | 35.294 | 204 | 109 | 9 | 1 | 188 | 74 | 270 | 1.48e-21 | 92.0 |
MS.gene80861.t1 | MTR_7g098570 | 36.199 | 221 | 102 | 10 | 2 | 188 | 86 | 301 | 4.05e-21 | 90.5 |
MS.gene80861.t1 | MTR_7g098480 | 34.247 | 219 | 107 | 9 | 2 | 188 | 84 | 297 | 6.79e-20 | 86.7 |
MS.gene80861.t1 | MTR_5g008920 | 32.110 | 218 | 110 | 8 | 9 | 193 | 83 | 295 | 2.28e-19 | 84.7 |
MS.gene80861.t1 | MTR_3g087260 | 32.461 | 191 | 97 | 6 | 34 | 194 | 181 | 369 | 7.06e-19 | 84.0 |
MS.gene80861.t1 | MTR_3g087260 | 34.821 | 112 | 72 | 1 | 22 | 133 | 81 | 191 | 4.07e-15 | 73.2 |
MS.gene80861.t1 | MTR_3g108560 | 32.287 | 223 | 95 | 10 | 7 | 188 | 90 | 297 | 6.18e-18 | 80.1 |
MS.gene80861.t1 | MTR_3g107120 | 33.778 | 225 | 100 | 11 | 4 | 188 | 88 | 303 | 1.36e-17 | 80.1 |
MS.gene80861.t1 | MTR_7g007080 | 32.474 | 194 | 86 | 6 | 25 | 184 | 102 | 284 | 2.60e-17 | 79.0 |
MS.gene80861.t1 | MTR_7g056020 | 31.282 | 195 | 92 | 7 | 30 | 188 | 94 | 282 | 3.08e-17 | 79.3 |
MS.gene80861.t1 | MTR_3g082890 | 31.897 | 232 | 108 | 7 | 9 | 191 | 166 | 396 | 5.76e-17 | 78.6 |
MS.gene80861.t1 | MTR_3g082890 | 31.878 | 229 | 106 | 7 | 9 | 188 | 86 | 313 | 1.23e-16 | 77.4 |
MS.gene80861.t1 | MTR_3g108150 | 31.193 | 218 | 108 | 7 | 9 | 190 | 85 | 296 | 3.09e-16 | 75.9 |
MS.gene80861.t1 | MTR_3g107100 | 30.000 | 230 | 110 | 11 | 4 | 191 | 78 | 298 | 5.68e-16 | 75.5 |
MS.gene80861.t1 | MTR_5g083890 | 32.850 | 207 | 80 | 9 | 26 | 184 | 106 | 301 | 1.01e-15 | 74.7 |
MS.gene80861.t1 | MTR_3g023630 | 30.332 | 211 | 115 | 6 | 8 | 189 | 80 | 287 | 1.09e-15 | 74.3 |
MS.gene80861.t1 | MTR_4g134150 | 42.623 | 122 | 58 | 7 | 2 | 119 | 76 | 189 | 2.59e-15 | 72.0 |
MS.gene80861.t1 | MTR_2g007450 | 32.645 | 242 | 88 | 13 | 9 | 184 | 93 | 325 | 2.72e-15 | 73.6 |
MS.gene80861.t1 | MTR_7g056287 | 27.488 | 211 | 115 | 7 | 7 | 187 | 78 | 280 | 1.45e-14 | 71.2 |
MS.gene80861.t1 | MTR_7g056277 | 28.230 | 209 | 112 | 7 | 7 | 185 | 334 | 534 | 7.20e-14 | 69.7 |
MS.gene80861.t1 | MTR_3g109982 | 32.164 | 171 | 84 | 5 | 55 | 194 | 220 | 389 | 2.94e-13 | 67.8 |
MS.gene80861.t1 | MTR_3g110010 | 32.727 | 165 | 79 | 5 | 55 | 188 | 220 | 383 | 4.72e-13 | 67.4 |
MS.gene80861.t1 | MTR_2g007400 | 29.703 | 202 | 89 | 9 | 26 | 184 | 110 | 301 | 5.67e-13 | 66.6 |
MS.gene80861.t1 | MTR_5g073420 | 27.189 | 217 | 113 | 9 | 5 | 188 | 84 | 288 | 7.24e-13 | 66.2 |
MS.gene80861.t1 | MTR_5g007410 | 28.755 | 233 | 102 | 11 | 6 | 188 | 99 | 317 | 1.14e-12 | 65.9 |
MS.gene80861.t1 | MTR_5g058000 | 26.977 | 215 | 119 | 7 | 5 | 189 | 80 | 286 | 3.16e-12 | 64.7 |
MS.gene80861.t1 | MTR_4g080610 | 30.047 | 213 | 109 | 9 | 14 | 188 | 54 | 264 | 4.06e-12 | 64.3 |
MS.gene80861.t1 | MTR_3g107160 | 28.646 | 192 | 94 | 7 | 29 | 184 | 107 | 291 | 4.39e-12 | 64.3 |
MS.gene80861.t1 | MTR_7g033945 | 41.237 | 97 | 50 | 3 | 2 | 92 | 77 | 172 | 5.51e-12 | 62.0 |
MS.gene80861.t1 | MTR_7g056417 | 46.575 | 73 | 36 | 2 | 55 | 125 | 7 | 78 | 9.15e-12 | 60.8 |
MS.gene80861.t1 | MTR_5g031970 | 28.571 | 203 | 107 | 9 | 12 | 192 | 85 | 271 | 1.41e-11 | 62.8 |
MS.gene80861.t1 | MTR_5g045170 | 27.679 | 224 | 112 | 10 | 8 | 188 | 84 | 300 | 3.16e-11 | 61.6 |
MS.gene80861.t1 | MTR_6g040270 | 30.061 | 163 | 77 | 6 | 59 | 188 | 131 | 289 | 4.09e-11 | 61.2 |
MS.gene80861.t1 | MTR_7g026500 | 26.432 | 227 | 121 | 7 | 3 | 188 | 84 | 305 | 5.45e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 41 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCTTGATTCTTCTAAAAT+TGG | 0.151002 | 7.4:-69727423 | MS.gene80861:CDS |
CTCAAATATGGTAACTCTTC+TGG | 0.184177 | 7.4:-69727747 | MS.gene80861:CDS |
GTTTCCAGATCCTTTAAAAT+TGG | 0.216407 | 7.4:+69727456 | None:intergenic |
TATTTGAACTGACACAAAAT+TGG | 0.255227 | 7.4:-69727200 | MS.gene80861:CDS |
GAGATCATGATTGCTTTCTT+AGG | 0.290177 | 7.4:-69727494 | MS.gene80861:CDS |
CAGTCGTTCCGCCTCAAATA+TGG | 0.311104 | 7.4:-69727759 | MS.gene80861:CDS |
CTTGCTCAAAACTCTTCATT+TGG | 0.317628 | 7.4:-69727535 | MS.gene80861:CDS |
GTTCAAATACAATCTTCATA+TGG | 0.340680 | 7.4:+69727214 | None:intergenic |
CATTTGGATACAATCTCTTT+TGG | 0.349062 | 7.4:-69727519 | MS.gene80861:CDS |
TCAAATATGGTAACTCTTCT+GGG | 0.392169 | 7.4:-69727746 | MS.gene80861:CDS |
GCTCACTTCTCTTAAGTTGA+AGG | 0.407385 | 7.4:-69727595 | MS.gene80861:CDS |
ATTGGCTTGAGAAGTGGAAT+TGG | 0.407918 | 7.4:-69727182 | MS.gene80861:CDS |
CATATTTGAGGCGGAACGAC+TGG | 0.425217 | 7.4:+69727760 | None:intergenic |
ATGATAAGATTCTGAAGCTT+AGG | 0.428317 | 7.4:+69727135 | None:intergenic |
TTCAAATACAATCTTCATAT+GGG | 0.434326 | 7.4:+69727215 | None:intergenic |
AATTATGAAAGGTGGGAAGT+TGG | 0.460463 | 7.4:+69727241 | None:intergenic |
GAGCAAGGGAAAATTGAAAT+CGG | 0.466268 | 7.4:+69727551 | None:intergenic |
ATGGGTTAAATTATGAAAGG+TGG | 0.487639 | 7.4:+69727233 | None:intergenic |
CAGAAGAGTTACCATATTTG+AGG | 0.495202 | 7.4:+69727748 | None:intergenic |
CACAAAATTGGCTTGAGAAG+TGG | 0.495947 | 7.4:-69727188 | MS.gene80861:CDS |
AAGATTCTGAATTCCACGTT+GGG | 0.497552 | 7.4:+69727683 | None:intergenic |
TGCTTTCTTAGGCTTCTCAA+AGG | 0.504333 | 7.4:-69727483 | MS.gene80861:CDS |
GCTTTCTTAGGCTTCTCAAA+GGG | 0.513791 | 7.4:-69727482 | MS.gene80861:CDS |
TCTGAAGCTTAGGACAATGT+TGG | 0.514713 | 7.4:+69727145 | None:intergenic |
TGGGTTAAATTATGAAAGGT+GGG | 0.527065 | 7.4:+69727234 | None:intergenic |
TCAGAATCTTATCATTCAAG+AGG | 0.547563 | 7.4:-69727127 | MS.gene80861:intron |
CAAAGCGGTAAATTAAAGCT+AGG | 0.556596 | 7.4:+69727636 | None:intergenic |
CATATGGGTTAAATTATGAA+AGG | 0.557054 | 7.4:+69727230 | None:intergenic |
ATAAATCTCTTGACATCATG+CGG | 0.574878 | 7.4:+69727717 | None:intergenic |
ATTAAAGCTAGGTTCGAGAG+GGG | 0.595208 | 7.4:+69727647 | None:intergenic |
CTGCAGCGTGATGTTTCTCA+TGG | 0.595732 | 7.4:+69727788 | None:intergenic |
TAAATCTCTTGACATCATGC+GGG | 0.605505 | 7.4:+69727718 | None:intergenic |
CAAGATTCTGAATTCCACGT+TGG | 0.607610 | 7.4:+69727682 | None:intergenic |
TTTGAGGCGGAACGACTGGA+TGG | 0.618253 | 7.4:+69727764 | None:intergenic |
AATTAAAGCTAGGTTCGAGA+GGG | 0.631440 | 7.4:+69727646 | None:intergenic |
AAATTAAAGCTAGGTTCGAG+AGG | 0.637660 | 7.4:+69727645 | None:intergenic |
AAGAGTTACCATATTTGAGG+CGG | 0.639932 | 7.4:+69727751 | None:intergenic |
ATTCATGCTGTTGCCCAACG+TGG | 0.664829 | 7.4:-69727696 | MS.gene80861:CDS |
CTGCAACTGAACACACAAAG+CGG | 0.668847 | 7.4:+69727621 | None:intergenic |
TTATGACATCTTATTCAGTG+TGG | 0.676653 | 7.4:-69727397 | MS.gene80861:intron |
TTAAAGCTAGGTTCGAGAGG+GGG | 0.679667 | 7.4:+69727648 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAAAAGAAATCAAAATTA+AGG | + | chr7.4:69727266-69727285 | None:intergenic | 15.0% |
!! | AAATTTCATTTGATTGAGTA+TGG | - | chr7.4:69727572-69727591 | MS.gene80861:CDS | 20.0% |
!! | TAAATTATCATCATTTAGCA+TGG | + | chr7.4:69727230-69727249 | None:intergenic | 20.0% |
!! | TACTTTATATTTATATCCAC+AGG | + | chr7.4:69727502-69727521 | None:intergenic | 20.0% |
!! | TGTCAAAATATCTAACATAA+AGG | + | chr7.4:69727681-69727700 | None:intergenic | 20.0% |
!! | TTCAAATACAATCTTCATAT+GGG | + | chr7.4:69727106-69727125 | None:intergenic | 20.0% |
! | AAAATTGTTTGATGTTGACA+GGG | - | chr7.4:69727289-69727308 | MS.gene80861:intron | 25.0% |
! | AAAGGAAAGAAATTTCACAA+AGG | + | chr7.4:69727719-69727738 | None:intergenic | 25.0% |
! | AAATTTCACAAAGGTTTGAA+AGG | + | chr7.4:69727710-69727729 | None:intergenic | 25.0% |
! | AGGATAACTTGATTATCATT+TGG | + | chr7.4:69727525-69727544 | None:intergenic | 25.0% |
! | GTTCAAATACAATCTTCATA+TGG | + | chr7.4:69727107-69727126 | None:intergenic | 25.0% |
! | TAATGCAAAGTTTCTATCAA+TGG | - | chr7.4:69726973-69726992 | MS.gene80861:intron | 25.0% |
! | TATTGATGTTTATCAGTGTT+TGG | - | chr7.4:69727772-69727791 | MS.gene80861:CDS | 25.0% |
! | TATTTGAACTGACACAAAAT+TGG | - | chr7.4:69727118-69727137 | MS.gene80861:intron | 25.0% |
!! | CATATGGGTTAAATTATGAA+AGG | + | chr7.4:69727091-69727110 | None:intergenic | 25.0% |
!!! | TTGCTTGATTCTTCTAAAAT+TGG | - | chr7.4:69726895-69726914 | MS.gene80861:intron | 25.0% |
ATAAATCTCTTGACATCATG+CGG | + | chr7.4:69726604-69726623 | None:intergenic | 30.0% | |
CAAAACATCCAATGCTATTA+TGG | + | chr7.4:69727631-69727650 | None:intergenic | 30.0% | |
CATTTGATTGAGTATGGTTA+GGG | - | chr7.4:69727578-69727597 | MS.gene80861:CDS | 30.0% | |
GAAAATTGTTTGATGTTGAC+AGG | - | chr7.4:69727288-69727307 | MS.gene80861:intron | 30.0% | |
TATATTTATATCCACAGGAG+AGG | + | chr7.4:69727497-69727516 | None:intergenic | 30.0% | |
TCAAATATGGTAACTCTTCT+GGG | - | chr7.4:69726572-69726591 | MS.gene80861:intron | 30.0% | |
TCAGAATCTTATCATTCAAG+AGG | - | chr7.4:69727191-69727210 | MS.gene80861:CDS | 30.0% | |
TCATTTGATTGAGTATGGTT+AGG | - | chr7.4:69727577-69727596 | MS.gene80861:CDS | 30.0% | |
TGGGTTAAATTATGAAAGGT+GGG | + | chr7.4:69727087-69727106 | None:intergenic | 30.0% | |
TTATGACATCTTATTCAGTG+TGG | - | chr7.4:69726921-69726940 | MS.gene80861:intron | 30.0% | |
TTTGTAACTTATGCAGTACT+CGG | - | chr7.4:69727044-69727063 | MS.gene80861:intron | 30.0% | |
! | ATGGGTTAAATTATGAAAGG+TGG | + | chr7.4:69727088-69727107 | None:intergenic | 30.0% |
! | CATTTGGATACAATCTCTTT+TGG | - | chr7.4:69726799-69726818 | MS.gene80861:intron | 30.0% |
!! | ATGATAAGATTCTGAAGCTT+AGG | + | chr7.4:69727186-69727205 | None:intergenic | 30.0% |
!! | GTTTCCAGATCCTTTAAAAT+TGG | + | chr7.4:69726865-69726884 | None:intergenic | 30.0% |
!!! | AAATGAAGAGTTTTGAGCAA+GGG | + | chr7.4:69726784-69726803 | None:intergenic | 30.0% |
AAATTAAAGCTAGGTTCGAG+AGG | + | chr7.4:69726676-69726695 | None:intergenic | 35.0% | |
AAGAGTTACCATATTTGAGG+CGG | + | chr7.4:69726570-69726589 | None:intergenic | 35.0% | |
AAGATTCTGAATTCCACGTT+GGG | + | chr7.4:69726638-69726657 | None:intergenic | 35.0% | |
AATTAAAGCTAGGTTCGAGA+GGG | + | chr7.4:69726675-69726694 | None:intergenic | 35.0% | |
AATTATGAAAGGTGGGAAGT+TGG | + | chr7.4:69727080-69727099 | None:intergenic | 35.0% | |
ACATCCAATGCTATTATGGT+AGG | + | chr7.4:69727627-69727646 | None:intergenic | 35.0% | |
ACTTCCTACCATAATAGCAT+TGG | - | chr7.4:69727620-69727639 | MS.gene80861:CDS | 35.0% | |
AGTTGTGATGAAAGACATTC+TGG | + | chr7.4:69727370-69727389 | None:intergenic | 35.0% | |
CAAAGCGGTAAATTAAAGCT+AGG | + | chr7.4:69726685-69726704 | None:intergenic | 35.0% | |
CAGAAGAGTTACCATATTTG+AGG | + | chr7.4:69726573-69726592 | None:intergenic | 35.0% | |
CCTGCCTTTATAACCTATAA+GGG | + | chr7.4:69727404-69727423 | None:intergenic | 35.0% | |
CTCAAATATGGTAACTCTTC+TGG | - | chr7.4:69726571-69726590 | MS.gene80861:intron | 35.0% | |
CTTAAAACATGCTCCCTTAT+AGG | - | chr7.4:69727388-69727407 | MS.gene80861:intron | 35.0% | |
CTTGCTCAAAACTCTTCATT+TGG | - | chr7.4:69726783-69726802 | MS.gene80861:intron | 35.0% | |
GAGATCATGATTGCTTTCTT+AGG | - | chr7.4:69726824-69726843 | MS.gene80861:intron | 35.0% | |
GAGCAAGGGAAAATTGAAAT+CGG | + | chr7.4:69726770-69726789 | None:intergenic | 35.0% | |
TAAATCTCTTGACATCATGC+GGG | + | chr7.4:69726603-69726622 | None:intergenic | 35.0% | |
TCCTGCCTTTATAACCTATA+AGG | + | chr7.4:69727405-69727424 | None:intergenic | 35.0% | |
TGCTCCCTTATAGGTTATAA+AGG | - | chr7.4:69727397-69727416 | MS.gene80861:intron | 35.0% | |
! | ACAGTTGTCACTTGTTAGAA+AGG | + | chr7.4:69727737-69727756 | None:intergenic | 35.0% |
!! | GAAAGACATTCTGGAACAAT+CGG | + | chr7.4:69727361-69727380 | None:intergenic | 35.0% |
!! | GTGTCCAATTTTAAAGGATC+TGG | - | chr7.4:69726858-69726877 | MS.gene80861:intron | 35.0% |
!!! | CAAAGGGTGTCCAATTTTAA+AGG | - | chr7.4:69726852-69726871 | MS.gene80861:intron | 35.0% |
!!! | CAAATGAAGAGTTTTGAGCA+AGG | + | chr7.4:69726785-69726804 | None:intergenic | 35.0% |
AAGTTATCCTTGTGTCCAAG+GGG | - | chr7.4:69727535-69727554 | MS.gene80861:CDS | 40.0% | |
ATCCATCCAATCGACATCTT+CGG | + | chr7.4:69727335-69727354 | None:intergenic | 40.0% | |
ATTAAAGCTAGGTTCGAGAG+GGG | + | chr7.4:69726674-69726693 | None:intergenic | 40.0% | |
CAAGATTCTGAATTCCACGT+TGG | + | chr7.4:69726639-69726658 | None:intergenic | 40.0% | |
CAAGTTATCCTTGTGTCCAA+GGG | - | chr7.4:69727534-69727553 | MS.gene80861:CDS | 40.0% | |
CCCTTATAGGTTATAAAGGC+AGG | - | chr7.4:69727401-69727420 | MS.gene80861:CDS | 40.0% | |
GCTTTCTTAGGCTTCTCAAA+GGG | - | chr7.4:69726836-69726855 | MS.gene80861:intron | 40.0% | |
TCAAGTTATCCTTGTGTCCA+AGG | - | chr7.4:69727533-69727552 | MS.gene80861:CDS | 40.0% | |
TGCTTTCTTAGGCTTCTCAA+AGG | - | chr7.4:69726835-69726854 | MS.gene80861:intron | 40.0% | |
! | TCTGAAGCTTAGGACAATGT+TGG | + | chr7.4:69727176-69727195 | None:intergenic | 40.0% |
!! | ATTGGCTTGAGAAGTGGAAT+TGG | - | chr7.4:69727136-69727155 | MS.gene80861:CDS | 40.0% |
!! | CACAAAATTGGCTTGAGAAG+TGG | - | chr7.4:69727130-69727149 | MS.gene80861:CDS | 40.0% |
!! | GCTCACTTCTCTTAAGTTGA+AGG | - | chr7.4:69726723-69726742 | MS.gene80861:intron | 40.0% |
AGTTATCCTTGTGTCCAAGG+GGG | - | chr7.4:69727536-69727555 | MS.gene80861:CDS | 45.0% | |
ATGGAACCGAAGATGTCGAT+TGG | - | chr7.4:69727326-69727345 | MS.gene80861:intron | 45.0% | |
CTGCAACTGAACACACAAAG+CGG | + | chr7.4:69726700-69726719 | None:intergenic | 45.0% | |
TTAAAGCTAGGTTCGAGAGG+GGG | + | chr7.4:69726673-69726692 | None:intergenic | 45.0% | |
TTACATGTAGTTGACCCCCT+TGG | + | chr7.4:69727553-69727572 | None:intergenic | 45.0% | |
! | AACCGAAGATGTCGATTGGA+TGG | - | chr7.4:69727330-69727349 | MS.gene80861:intron | 45.0% |
ATTCATGCTGTTGCCCAACG+TGG | - | chr7.4:69726622-69726641 | MS.gene80861:intron | 50.0% | |
CAGTCGTTCCGCCTCAAATA+TGG | - | chr7.4:69726559-69726578 | MS.gene80861:intron | 50.0% | |
! | CAGGGTTCTAGCGATGGAAA+TGG | - | chr7.4:69727307-69727326 | MS.gene80861:intron | 50.0% |
! | CATATTTGAGGCGGAACGAC+TGG | + | chr7.4:69726561-69726580 | None:intergenic | 50.0% |
! | TGTTGACAGGGTTCTAGCGA+TGG | - | chr7.4:69727301-69727320 | MS.gene80861:intron | 50.0% |
AGTTGACCCCCTTGGACACA+AGG | + | chr7.4:69727545-69727564 | None:intergenic | 55.0% | |
GACGATCAATGCCTCTCCTG+TGG | - | chr7.4:69727483-69727502 | MS.gene80861:CDS | 55.0% | |
! | TTTGAGGCGGAACGACTGGA+TGG | + | chr7.4:69726557-69726576 | None:intergenic | 55.0% |
!! | GTTCGAGAGGGGGCATTTCA+AGG | + | chr7.4:69726663-69726682 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 69726532 | 69727808 | 69726532 | ID=MS.gene80861 |
chr7.4 | mRNA | 69726532 | 69727808 | 69726532 | ID=MS.gene80861.t1;Parent=MS.gene80861 |
chr7.4 | exon | 69727398 | 69727808 | 69727398 | ID=MS.gene80861.t1.exon1;Parent=MS.gene80861.t1 |
chr7.4 | CDS | 69727398 | 69727808 | 69727398 | ID=cds.MS.gene80861.t1;Parent=MS.gene80861.t1 |
chr7.4 | exon | 69727128 | 69727280 | 69727128 | ID=MS.gene80861.t1.exon2;Parent=MS.gene80861.t1 |
chr7.4 | CDS | 69727128 | 69727280 | 69727128 | ID=cds.MS.gene80861.t1;Parent=MS.gene80861.t1 |
chr7.4 | exon | 69726532 | 69726552 | 69726532 | ID=MS.gene80861.t1.exon3;Parent=MS.gene80861.t1 |
chr7.4 | CDS | 69726532 | 69726552 | 69726532 | ID=cds.MS.gene80861.t1;Parent=MS.gene80861.t1 |
Gene Sequence |
Protein sequence |