AlfalfaGEDB | MS.gene07438

M. sativa cultivar XinJiangDaYe / MS.gene07438

KEGG: -
GO: -
PFAM: PF12697.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07438.t1	XP_013468801.1	98.8	258	3	0	9	266	133	390	6.50E-144	520

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07438.t1	O05235	28.0	257	150	10	11	263	47	272	2.0e-16	87.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07438.t1	A0A072VN42	98.8	258	3	0	9	266	133	390	4.7e-144	520.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene07438	0.837749	4.33E-57	-1.69E-46
MS.gene049171	MS.gene07438	0.898965	3.16E-77	-1.69E-46
MS.gene049173	MS.gene07438	0.846461	2.14E-59	-1.69E-46
MS.gene049217	MS.gene07438	0.882556	9.44E-71	-1.69E-46
MS.gene049222	MS.gene07438	0.904552	1.09E-79	-1.69E-46
MS.gene049232	MS.gene07438	0.839667	1.38E-57	-1.69E-46
MS.gene049285	MS.gene07438	0.89942	2.02E-77	-1.69E-46
MS.gene04932	MS.gene07438	-0.816136	6.46E-52	-1.69E-46
MS.gene049320	MS.gene07438	0.896084	5.18E-76	-1.69E-46
MS.gene049369	MS.gene07438	0.80553	1.28E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene07438	MS.gene053824	PPI
MS.gene07438	MS.gene012023	PPI
MS.gene07438	MS.gene76418	PPI
MS.gene63050	MS.gene07438	PPI
MS.gene65675	MS.gene07438	PPI
MS.gene87466	MS.gene07438	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07438.t1	MTR_1g076920	98.837	258	3	0	9	266	133	390	0.0	522
MS.gene07438.t1	MTR_5g056200	33.858	254	146	7	9	256	93	330	2.74e-39	140
MS.gene07438.t1	MTR_8g077185	37.643	263	143	9	10	266	118	365	1.02e-37	136
MS.gene07438.t1	MTR_3g034670	27.059	255	151	10	27	266	216	450	2.19e-17	81.6
MS.gene07438.t1	MTR_4g036495	30.400	250	142	9	20	263	450	673	2.36e-16	79.0
MS.gene07438.t1	MTR_4g011440	24.719	267	163	9	17	266	397	642	2.29e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07438.t1	AT5G38520	74.031	258	61	1	9	266	108	359	1.27e-132	379
MS.gene07438.t1	AT5G38520	72.348	264	67	1	9	266	108	371	4.05e-132	379
MS.gene07438.t1	AT5G19850	32.685	257	145	7	9	256	112	349	3.10e-37	135
MS.gene07438.t1	AT4G36530	33.086	269	143	10	10	264	61	306	1.31e-33	124
MS.gene07438.t1	AT4G36530	33.086	269	143	10	10	264	118	363	5.51e-33	124
MS.gene07438.t1	AT5G13800	27.815	302	153	14	9	266	157	437	1.33e-17	82.4
MS.gene07438.t1	AT5G13800	27.815	302	153	14	9	266	134	414	1.40e-17	82.4
MS.gene07438.t1	AT5G13800	27.815	302	153	14	9	266	134	414	1.40e-17	82.4
MS.gene07438.t1	AT5G13800	27.931	290	144	14	9	254	134	402	2.80e-16	78.2

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Find 64 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAATCAGCCAAAGCA+AGG	0.543664	1.2:-63493095	None:intergenic
AAATCAATCAGCCAAAGCAA+GGG	0.595342	1.2:-63493094	None:intergenic
AACATCTTGAGTTCAGTGTA+TGG	0.513396	1.2:+63493260	MS.gene07438:CDS
AAGGCTCCTTCAGCATTCGC+CGG	0.569196	1.2:-63493511	None:intergenic
AATTCAGGCCTGTCATCATG+GGG	0.687756	1.2:-63493739	None:intergenic
AATTGATACAAATGCATCTA+AGG	0.330008	1.2:-63493530	None:intergenic
ACAAAGCAATTGTTGATGAT+TGG	0.341853	1.2:+63493053	MS.gene07438:CDS
ACAGTTGATCTTGGATTTCT+TGG	0.227874	1.2:+63492793	MS.gene07438:intron
ACGTCCATGTAGTTAAAACA+AGG	0.662756	1.2:+63492283	MS.gene07438:CDS
ACTAGAGTTTCACTTGAATC+TGG	0.383055	1.2:-63492989	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGATATTTAGGCAAAATG+TGG	-	chr1.2:63492671-63492690	None:intergenic	30.0%
GCATTTGTATCAATTGTAAC+AGG	+	chr1.2:63493538-63493557	MS.gene07438:CDS	30.0%
GTTTATGCTATTGATCTTCT+TGG	+	chr1.2:63492456-63492475	MS.gene07438:CDS	30.0%
TACAAAACCAACGGTTAAAA+AGG	-	chr1.2:63493361-63493380	None:intergenic	30.0%
TCAATACAAACAGTTGATCT+TGG	+	chr1.2:63492784-63492803	MS.gene07438:intron	30.0%
TCTCCCCATAAAAGTAAAAT+AGG	-	chr1.2:63493610-63493629	None:intergenic	30.0%
TGATGCAAACCTTGATATTT+AGG	-	chr1.2:63492681-63492700	None:intergenic	30.0%
TTAAATGCAGAGAGAATTTG+AGG	+	chr1.2:63493237-63493256	MS.gene07438:intron	30.0%
AAAATCAATCAGCCAAAGCA+AGG	-	chr1.2:63493098-63493117	None:intergenic	35.0%
AAATCAATCAGCCAAAGCAA+GGG	-	chr1.2:63493097-63493116	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	63492279	63493801	63492279	ID=MS.gene07438
chr1.2	mRNA	63492279	63493801	63492279	ID=MS.gene07438.t1;Parent=MS.gene07438
chr1.2	exon	63492279	63492304	63492279	ID=MS.gene07438.t1.exon1;Parent=MS.gene07438.t1
chr1.2	CDS	63492279	63492304	63492279	ID=cds.MS.gene07438.t1;Parent=MS.gene07438.t1
chr1.2	exon	63492425	63492536	63492425	ID=MS.gene07438.t1.exon2;Parent=MS.gene07438.t1
chr1.2	CDS	63492425	63492536	63492425	ID=cds.MS.gene07438.t1;Parent=MS.gene07438.t1
chr1.2	exon	63492797	63492897	63492797	ID=MS.gene07438.t1.exon3;Parent=MS.gene07438.t1
chr1.2	CDS	63492797	63492897	63492797	ID=cds.MS.gene07438.t1;Parent=MS.gene07438.t1
chr1.2	exon	63492982	63493170	63492982	ID=MS.gene07438.t1.exon4;Parent=MS.gene07438.t1
chr1.2	CDS	63492982	63493170	63492982	ID=cds.MS.gene07438.t1;Parent=MS.gene07438.t1
chr1.2	exon	63493247	63493316	63493247	ID=MS.gene07438.t1.exon5;Parent=MS.gene07438.t1
chr1.2	CDS	63493247	63493316	63493247	ID=cds.MS.gene07438.t1;Parent=MS.gene07438.t1
chr1.2	exon	63493499	63493801	63493499	ID=MS.gene07438.t1.exon6;Parent=MS.gene07438.t1
chr1.2	CDS	63493499	63493801	63493499	ID=cds.MS.gene07438.t1;Parent=MS.gene07438.t1

Gene Sequence

>MS.gene07438

ATGTACGTCCATGTAGTTAAAACAAGGTTGACATATGCAACCGATGCCTCTAAAATGTCACAATTTTATACTCTGACAAATTAGTCACTGAGTTCAACTATTTTTCTCAAAATTGGGTTGTAAAGGCATCATCATTTATCTGACAGGAATATCAAGACACTGTCTGAGAATTATACGGTTTATGCTATTGATCTTCTTGGTTTTGGAGCATCAGATAAGCCACCAGGCTTTTCGTATACCATGGAAACATGGGCTGAGGTATTTGTCTAAGGACCTTTTAGTTCGACATCATTAAAATCTTAGTTCCAATTTGCAGTCCAAACTACAATTGCAGCCGCAATATAACTATTTTAGAGATTTCTGCAACTGCATTGTAACTGTAATTGCGGCCACATTTTGCCTAAATATCAAGGTTTGCATCACAACTGCAACTAAGACCGCAACTGCGATTAAGAACTGTGATTTACACTCTAGCATAACAAATTTAACTTATACGGTATAATATTCAATACAAACAGTTGATCTTGGATTTCTTGGATGAAGTTGTTCAGAAGCCAACAGTACTAATAGGAAACTCTGTTGGAAGTCTTGCTTGTCTCATTGCTGCTGCTTCAGGCATGTATGTTTGTTACAATCTACTTGTAGCTGAAGATGTAATCTTAAATATCTGAAACTTCTTATTTTTGTTCTTCTTATAATGTAGTATTCGACCAGATTCAAGTGAAACTCTAGTTAGAGGAATTGTGCTATTAAATTGTTCTGGTGGCATGAACAACAAAGCAATTGTTGATGATTGGAGAATCAAGTTACTCCTTCCCTTGCTTTGGCTGATTGATTTTTTATTGAACCAAAAGGGAATTGCTTCTGCAATTTTTGAGCGTGTTAAACAAAGGTAATCTCTTTAGATTAGGCCATAATTTCCCTAAATTTTTTGATAGGAAACATAAAACTGTATCGATTAAATGCAGAGAGAATTTGAGGAACATCTTGAGTTCAGTGTATGGAAATAAGGAGGCTGTGGATGATGAACTCGTGGAGGTAAATTAAGGCTATGATTGCTGTTTACTACTCTCTTCGTTCCTTTTTAACCGTTGGTTTTGTAGACAAAAATTGTTATTTATTTGTCGTTTTCAAAGTTCAATGGAATCACCGGAAGGAGTATTAATTTTTTTCTTCTTAAACAACATTTACTTATAAGAATTCATATTTTGGTTCCTCAGATCATTAGGGAACCGGCGAATGCTGAAGGAGCCTTAGATGCATTTGTATCAATTGTAACAGGGCCGCCGGGGCCTAATCCGGTGCAACTGGTGCCAAAAATATCATTGCCTATTTTACTTTTATGGGGAGATGAAGATCCCTTTACTCCAATTGATGGACCTGTTGGAAAGTACTTTTCTTCATTGCCTTCTCAACAAGAAAATGTTCAACTGTTCATGCTTGAAGGGGTTGGACATTGTCCCCATGATGACAGGCCTGAATTAGTCCATGAAAAATTGCTTCCATGGTTGGCAACTCTTTAA

Protein sequence

>MS.gene07438.t1

MYVHVVKTRNIKTLSENYTVYAIDLLGFGASDKPPGFSYTMETWAELILDFLDEVVQKPTVLIGNSVGSLACLIAAASGIIRPDSSETLVRGIVLLNCSGGMNNKAIVDDWRIKLLLPLLWLIDFLLNQKGIASAIFERVKQRENLRNILSSVYGNKEAVDDELVEIIREPANAEGALDAFVSIVTGPPGPNPVQLVPKISLPILLLWGDEDPFTPIDGPVGKYFSSLPSQQENVQLFMLEGVGHCPHDDRPELVHEKLLPWLATL