AlfalfaGEDB | MS.gene27061

M. sativa cultivar XinJiangDaYe / MS.gene27061

KEGG: K22520
GO: -
PFAM: PF17302.5

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27061.t1	XP_003589460.1	100	112	0	0	9	120	46	157	6.10E-41	176.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27061.t1	K4BVL1	89.3	112	12	0	9	120	48	159	2.2e-39	162.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27061.t1	G7I748	100.0	112	0	0	9	120	46	157	4.4e-41	176.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene27061	0.832403	9.64E-56	-1.69E-46
MS.gene049171	MS.gene27061	0.934764	2.44E-96	-1.69E-46
MS.gene049173	MS.gene27061	0.889161	3.10E-73	-1.69E-46
MS.gene049217	MS.gene27061	0.920553	1.11E-87	-1.69E-46
MS.gene049222	MS.gene27061	0.927629	9.00E-92	-1.69E-46
MS.gene049232	MS.gene27061	0.893197	7.87E-75	-1.69E-46
MS.gene049259	MS.gene27061	-0.823895	1.08E-53	-1.69E-46
MS.gene049281	MS.gene27061	-0.829162	6.01E-55	-1.69E-46
MS.gene049285	MS.gene27061	0.962081	1.87E-120	-1.69E-46
MS.gene049320	MS.gene27061	0.956523	2.41E-114	-1.69E-46

Showing 1 to 10 of 327 entries

Previous1 2 3 4 5…33Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27061.t1	MTR_1g024840	100.000	112	0	0	9	120	46	157	5.89e-80	232

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27061.t1	AT1G75690	84.211	114	18	0	7	120	41	154	4.75e-70	207

Showing 1 to 1 of 1 entries

Previous1Next

Find 26 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCGTTACCTTGATCGT+AGG	0.640316	1.1:+747892	MS.gene27061:CDS
AAGTTCAACAGTCACATTAC+CGG	0.426738	1.1:-747781	None:intergenic
AATGTGACTGTTGAACTTGG+TGG	0.646977	1.1:+747786	MS.gene27061:CDS
ACTTGGTGGAGCTGAGACGG+AGG	0.632275	1.1:+747800	MS.gene27061:CDS
AGAACCATTGCATGGGAAGC+AGG	0.424768	1.1:-746810	None:intergenic
ATTTGTGATTCATAAAACAC+TGG	0.577782	1.1:-746645	None:intergenic
CAGCCCTGCTTCCCATGCAA+TGG	0.546625	1.1:+746806	MS.gene27061:CDS
CAGGTAGTTGCTATAACTGT+TGG	0.428401	1.1:+746591	MS.gene27061:intron
CGAGCTCCAGAACCATTGCA+TGG	0.592093	1.1:-746818	None:intergenic
CTGACATGTACAACTTGTCA+AGG	0.612986	1.1:+747858	MS.gene27061:CDS

Showing 1 to 10 of 26 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACATAACCATGTCATG+TGG	+	chr1.1:746192-746211	MS.gene27061:intron	30.0%
AAACAAAATCTGCATTTCTC+TGG	-	chr1.1:747756-747775	None:intergenic	30.0%
AAGAAATTAGCAACCTGATA+TGG	-	chr1.1:747699-747718	None:intergenic	30.0%
AAGTAAGGACTAAACTTACA+AGG	+	chr1.1:746064-746083	MS.gene27061:intron	30.0%
AAGTAAGGACTAAACTTACA+AGG	-	chr1.1:746083-746064	None:intergenic	30.0%
AGAAAAGTGGAATGTAATTG+AGG	-	chr1.1:746370-746389	None:intergenic	30.0%
GTAGTAGATAAGGATTTAAG+AGG	-	chr1.1:746400-746419	None:intergenic	30.0%
TCTTGAACTTGATCAAAACA+CGG	+	chr1.1:746480-746499	MS.gene27061:CDS	30.0%
TGGAAATGAGAAAAACCAAA+GGG	+	chr1.1:745503-745522	MS.gene27061:intron	30.0%
TTATTTATGAAAAATCGGGG+TGG	+	chr1.1:745483-745502	MS.gene27061:intron	30.0%

Showing 1 to 10 of 151 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	744863	748086	744863	ID=MS.gene27061
chr1.1	mRNA	744863	748086	744863	ID=MS.gene27061.t1;Parent=MS.gene27061
chr1.1	exon	744863	744887	744863	ID=MS.gene27061.t1.exon1;Parent=MS.gene27061.t1
chr1.1	CDS	744863	744887	744863	ID=cds.MS.gene27061.t1;Parent=MS.gene27061.t1
chr1.1	exon	746479	746501	746479	ID=MS.gene27061.t1.exon2;Parent=MS.gene27061.t1
chr1.1	CDS	746479	746501	746479	ID=cds.MS.gene27061.t1;Parent=MS.gene27061.t1
chr1.1	exon	746594	746677	746594	ID=MS.gene27061.t1.exon3;Parent=MS.gene27061.t1
chr1.1	CDS	746594	746677	746594	ID=cds.MS.gene27061.t1;Parent=MS.gene27061.t1
chr1.1	exon	746788	746839	746788	ID=MS.gene27061.t1.exon4;Parent=MS.gene27061.t1
chr1.1	CDS	746788	746839	746788	ID=cds.MS.gene27061.t1;Parent=MS.gene27061.t1
chr1.1	exon	747757	747913	747757	ID=MS.gene27061.t1.exon5;Parent=MS.gene27061.t1
chr1.1	CDS	747757	747913	747757	ID=cds.MS.gene27061.t1;Parent=MS.gene27061.t1
chr1.1	exon	748065	748086	748065	ID=MS.gene27061.t1.exon6;Parent=MS.gene27061.t1
chr1.1	CDS	748065	748086	748065	ID=cds.MS.gene27061.t1;Parent=MS.gene27061.t1

Gene Sequence

>MS.gene27061

ATGGCAATAATGAAATTGAAATTTGGTTAGAACTACTTGTGTGATTTGATTATTTGTTAAAACTCTTGAGAAATAGTTTTGTTTATGGATGTAATGTTTTGCATTATATAACAATAGAGTGACATATCTTATATAGAGTCTCATACCATTCCGTGTTTCAGATGAAATAAAATACTAAATGTTACTTGTCGTATTCTATTGTTTTAGAATTTATTTTGCGTACTTGTGTATTTTTAGTTAAGATTTATTTTTACCATTCCGTGTTTCAGATGAAATAAAATACTAAATGTTACTTGTCGTATTCTATTGTTTTAGAATTTATTTTGCGTACTTGTGTATTTTTAGTTAAGATTTATTTTTAAAAAGAATGAATTGATCTTTCTAAGTCATGCTTACCATTAAGCAAATGAATGTTTTAAGAAAATGTCGTGAATGATTGAGAATTAAAAAAATGAACATAATGCATTGTGAATGAATGAACTTGGTAAATGAATGTAGTGATAGTCGATGATAGATATTGTGAAAAATGCATGTTTAAGAGCTTAAAAAAACACCATCTTTATCAAGAAATGTTGTACGTTTACCTGCCTAAAACAAGCGCATATTAACTTACACTAGGTTTATTTATGAAAAATCGGGGTGGAAATGAGAAAAACCAAAGGGCGAAAAACAATTTTCTCAAAGAAACGGGCTTTGTGTTGGTCCTATAAATAAAATAAAGGGTTAATTATGTTTTTGGTCCCTACAAAATTGCGACCTTGTAAGTTTAGTCCTTACTTAATTTTAATAGCATTTTTAATCCCTACAAAAAATTTCTGCACTCAATATTAGTCCTTACTCAATCCAAATTTGTTTAATTTATGCTTAAACTCTTAAGTTTTTCAACAATTTTTTACAGGCGTGTTAAGAACGTTATTAAAAGGTCCTCCGAAAAAAATATCGCAAAAATTTGATTTCTACGTCCATATTTTTGTTACTTATATCTTAAACTTTTGTCGTTTTAAAAAATTCATATTTAATTTATTTCATGTTAAAAAATTATAGATTTTAGTAAATGAACCATTCATAGTGTTCTAAACTTGTATAAAAAGAATCGTTAAAAAATTTAAGAGTCTAAGGATAATTAAACAAAATTTATTTTAGCAGGGACTAAAATTATAAGTAATTTTTTTTTGTAGGGATTAAAAATGCTATTAAAATTAAGTAAGGACTAAACTTACAAGGTCGCAATTTTGTAGGGACCAAAAACATAATTAACCCTAAAATAAAAAATAGAAATTAAGAAAGAAATTGAAAAAAAATGCACACAATGGAGCCACGTGGAAGATGAAAAACATAACCATGTCATGTGGTTGTGACAGCTTCACCACTGAATGGATGATGATTGATGATGTTCACTTGTATTGTTGATTGAGAGTTTCATTCATTCCATTGCCTAACACATTCAACACTTAGTTGAAGTTGAAGTGAATGAGAAATGACAATATCTTATTCACTTTCACTTCCTCAATTACATTCCACTTTTCTTTCTTCTCCTCTTAAATCCTTATCTACTACTACACAATTAGCTAGAAATAAATTTCAACCAAAACCCACATTTTATCCACGTATTAAAGCTCTTGAACTTGATCAAAACACGGTTGTTTATAATTTCCTCCTATTTCTTATTCATTCATTCAATGTTTTTTTGTTACATATTTATCTTAAATATGTGAGTGTTTGTTTTTTCAGGTAGTTGCTATAACTGTTGGTGTTTTGAGTGTGGCTGTTGGAATTGGCATACCAGTGTTTTATGAATCACAAATTGATAATGCTGTAAAGTGTTTTTACCATTTATTTATTACTATATCATATAATAATGTGTTGGATTAAAATTTAGTTATATATGATATATACGTACCTTTTTTTTTTTTAATTTGTTGCAGGCCAAAAGAGATAACACGCAGCCCTGCTTCCCATGCAATGGTTCTGGAGCTCGTAAGTATCATTTTTTTCTCTTCAATTTCATCATCACACTTTATACTTTTATGAATGGAGGAGCATTATGGAGGTAGCTCACAAGTTATTGTTAATTTGGAGTAGTTGTTAGTACATAACTAACTACTTATATAATATTGTTGCTGTTGTAGTGTAATGTGCAAGGCCAGCGTTTGAATTAGCTTTTAGTTCATTGGAATTTCTCGATTAAAATATGTCTATGATTCTTGACATACACCAAAAAGTTTATATGCTTATAGGCAGTGTTTGTGGATAAGTTTTTTTTATAGGTAGTGGTATTTCTTGTCTTAACTCTTAACCGTCATGTTCTCGAGGGAAAGAGACTTTGGTAATATGGAGTTCGGTTGGGAGTTAACTGTCAAGTAAAGTCTGACCAATGATTGTTCAAGCTAGCATTTGTAAAAGATTGCTTATAGGTAGTGTTTATGGATAAGTTAAATTATATAACTTCTGGAAGAAAAATAATTTAAAATGCAGAATTTCATTCTAAATTAGACAAGAAGTTATTATTTTAACTTTTTATCGGTATTGTACGATTCTTTTAATAATTCTTTTTTTTAGAATTGTTTGTTGAGCTCTAAGTCAAAGGGAGTGTGGAGGTAGTACGTATTTGCTTGCAAAGAAAATTATATATTAATTGCTTCTCACTAACACTGTTTTCCATATTATTAATCAGTATTTTATTAAATCTGATTCATTTCTATCTATACCAAGAATAATAAAATAGGTTATTGCAATTTTGTTTTTATTGAAACTTTTTGCGATGCTTATGATTGTGTCTGGTTGCTTTGTGCCGGTTACTAGACACTAGGTTGTGAATGTAATCAGTTCAAGTCCATATCAGGTTGCTAATTTCTTTACCAATCTTATCTTTGAAAATGTTACACTTTTGCCAGAGAAATGCAGATTTTGTTTGGGAACCGGTAATGTGACTGTTGAACTTGGTGGAGCTGAGACGGAGGTCTCTCGCTGCATAAATTGTGATGGTGCGGGTTCACTGACATGTACAACTTGTCAAGGATCTGGAATTCAACCTCGTTACCTTGATCGTAGGTACGGTGTTCAATCTTATTTTCCCCTTTGTAATAATTTAATAATGAATAAGATTAGTCATTATGTATACCATGATAATTTGTCATTTGGCGCACGTTTTGCAATAACCATGAAAATTGCTAACACTATTTTGTGTTTAATATTTGATCAGAGAATTCAAAGATGATGACTGA

Protein sequence

>MS.gene27061.t1

MAIMKLKFALELDQNTVVAITVGVLSVAVGIGIPVFYESQIDNAAKRDNTQPCFPCNGSGAQKCRFCLGTGNVTVELGGAETEVSRCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD