Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50725.t1 | XP_003607024.1 | 96.4 | 167 | 6 | 0 | 1 | 167 | 119 | 285 | 5.10E-78 | 300.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50725.t1 | P0AGK6 | 33.3 | 90 | 57 | 1 | 26 | 115 | 2 | 88 | 9.8e-06 | 51.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50725.t1 | G7JIN8 | 96.4 | 167 | 6 | 0 | 1 | 167 | 119 | 285 | 3.6e-78 | 300.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene50725 | 0.840955 | 6.37E-58 | -1.69E-46 |
MS.gene049171 | MS.gene50725 | 0.825214 | 5.30E-54 | -1.69E-46 |
MS.gene049173 | MS.gene50725 | 0.806254 | 8.99E-50 | -1.69E-46 |
MS.gene049217 | MS.gene50725 | 0.823344 | 1.46E-53 | -1.69E-46 |
MS.gene049222 | MS.gene50725 | 0.848122 | 7.49E-60 | -1.69E-46 |
MS.gene049284 | MS.gene50725 | 0.802279 | 6.05E-49 | -1.69E-46 |
MS.gene049285 | MS.gene50725 | 0.815894 | 7.32E-52 | -1.69E-46 |
MS.gene049351 | MS.gene50725 | 0.806322 | 8.70E-50 | -1.69E-46 |
MS.gene049356 | MS.gene50725 | 0.839805 | 1.27E-57 | -1.69E-46 |
MS.gene049369 | MS.gene50725 | 0.83849 | 2.79E-57 | -1.69E-46 |
MS.gene049427 | MS.gene50725 | 0.885337 | 8.87E-72 | -1.69E-46 |
MS.gene049491 | MS.gene50725 | 0.803499 | 3.39E-49 | -1.69E-46 |
MS.gene049609 | MS.gene50725 | 0.835169 | 1.96E-56 | -1.69E-46 |
MS.gene049633 | MS.gene50725 | 0.816369 | 5.73E-52 | -1.69E-46 |
MS.gene049805 | MS.gene50725 | 0.880044 | 7.59E-70 | -1.69E-46 |
MS.gene050083 | MS.gene50725 | -0.800138 | 1.66E-48 | -1.69E-46 |
MS.gene050163 | MS.gene50725 | 0.817589 | 3.05E-52 | -1.69E-46 |
MS.gene050165 | MS.gene50725 | 0.802226 | 6.20E-49 | -1.69E-46 |
MS.gene050301 | MS.gene50725 | 0.809226 | 2.10E-50 | -1.69E-46 |
MS.gene050333 | MS.gene50725 | 0.822704 | 2.05E-53 | -1.69E-46 |
MS.gene050432 | MS.gene50725 | 0.818882 | 1.55E-52 | -1.69E-46 |
MS.gene050529 | MS.gene50725 | 0.821073 | 4.90E-53 | -1.69E-46 |
MS.gene050538 | MS.gene50725 | 0.821205 | 4.57E-53 | -1.69E-46 |
MS.gene050593 | MS.gene50725 | 0.872484 | 3.07E-67 | -1.69E-46 |
MS.gene050670 | MS.gene50725 | 0.859188 | 4.92E-63 | -1.69E-46 |
MS.gene050747 | MS.gene50725 | 0.868661 | 5.53E-66 | -1.69E-46 |
MS.gene050767 | MS.gene50725 | 0.802495 | 5.46E-49 | -1.69E-46 |
MS.gene050770 | MS.gene50725 | 0.806741 | 7.10E-50 | -1.69E-46 |
MS.gene050772 | MS.gene50725 | 0.844833 | 5.92E-59 | -1.69E-46 |
MS.gene050809 | MS.gene50725 | -0.808547 | 2.93E-50 | -1.69E-46 |
MS.gene05080 | MS.gene50725 | 0.821928 | 3.11E-53 | -1.69E-46 |
MS.gene050812 | MS.gene50725 | 0.853757 | 1.93E-61 | -1.69E-46 |
MS.gene05081 | MS.gene50725 | 0.809148 | 2.18E-50 | -1.69E-46 |
MS.gene050950 | MS.gene50725 | 0.859762 | 3.30E-63 | -1.69E-46 |
MS.gene05100 | MS.gene50725 | 0.801264 | 9.77E-49 | -1.69E-46 |
MS.gene05101 | MS.gene50725 | 0.803192 | 3.92E-49 | -1.69E-46 |
MS.gene05105 | MS.gene50725 | 0.842055 | 3.27E-58 | -1.69E-46 |
MS.gene051228 | MS.gene50725 | 0.821832 | 3.27E-53 | -1.69E-46 |
MS.gene051387 | MS.gene50725 | 0.857758 | 1.31E-62 | -1.69E-46 |
MS.gene051582 | MS.gene50725 | 0.805882 | 1.08E-49 | -1.69E-46 |
MS.gene051617 | MS.gene50725 | 0.802735 | 4.87E-49 | -1.69E-46 |
MS.gene051666 | MS.gene50725 | 0.8926 | 1.37E-74 | -1.69E-46 |
MS.gene051692 | MS.gene50725 | 0.830157 | 3.44E-55 | -1.69E-46 |
MS.gene051694 | MS.gene50725 | 0.809646 | 1.71E-50 | -1.69E-46 |
MS.gene051734 | MS.gene50725 | 0.815526 | 8.84E-52 | -1.69E-46 |
MS.gene051838 | MS.gene50725 | 0.824376 | 8.35E-54 | -1.69E-46 |
MS.gene051858 | MS.gene50725 | 0.831822 | 1.34E-55 | -1.69E-46 |
MS.gene051874 | MS.gene50725 | 0.810668 | 1.03E-50 | -1.69E-46 |
MS.gene052164 | MS.gene50725 | 0.800774 | 1.23E-48 | -1.69E-46 |
MS.gene052188 | MS.gene50725 | 0.864422 | 1.23E-64 | -1.69E-46 |
MS.gene052271 | MS.gene50725 | 0.81333 | 2.70E-51 | -1.69E-46 |
MS.gene052290 | MS.gene50725 | 0.803632 | 3.18E-49 | -1.69E-46 |
MS.gene052310 | MS.gene50725 | 0.86007 | 2.67E-63 | -1.69E-46 |
MS.gene052322 | MS.gene50725 | 0.834105 | 3.63E-56 | -1.69E-46 |
MS.gene052340 | MS.gene50725 | 0.817056 | 4.02E-52 | -1.69E-46 |
MS.gene052379 | MS.gene50725 | 0.831395 | 1.71E-55 | -1.69E-46 |
MS.gene052414 | MS.gene50725 | 0.82715 | 1.83E-54 | -1.69E-46 |
MS.gene052421 | MS.gene50725 | 0.849832 | 2.51E-60 | -1.69E-46 |
MS.gene052481 | MS.gene50725 | 0.848764 | 4.98E-60 | -1.69E-46 |
MS.gene052484 | MS.gene50725 | 0.866067 | 3.74E-65 | -1.69E-46 |
MS.gene052485 | MS.gene50725 | 0.854265 | 1.38E-61 | -1.69E-46 |
MS.gene052501 | MS.gene50725 | 0.829523 | 4.91E-55 | -1.69E-46 |
MS.gene052503 | MS.gene50725 | 0.804074 | 2.57E-49 | -1.69E-46 |
MS.gene052505 | MS.gene50725 | 0.816054 | 6.74E-52 | -1.69E-46 |
MS.gene052615 | MS.gene50725 | 0.832997 | 6.87E-56 | -1.69E-46 |
MS.gene052870 | MS.gene50725 | 0.824018 | 1.01E-53 | -1.69E-46 |
MS.gene052872 | MS.gene50725 | 0.821421 | 4.07E-53 | -1.69E-46 |
MS.gene052966 | MS.gene50725 | 0.802287 | 6.03E-49 | -1.69E-46 |
MS.gene052982 | MS.gene50725 | 0.815682 | 8.16E-52 | -1.69E-46 |
MS.gene053009 | MS.gene50725 | 0.80262 | 5.14E-49 | -1.69E-46 |
MS.gene053103 | MS.gene50725 | 0.861268 | 1.16E-63 | -1.69E-46 |
MS.gene053104 | MS.gene50725 | 0.867216 | 1.61E-65 | -1.69E-46 |
MS.gene053107 | MS.gene50725 | 0.833613 | 4.82E-56 | -1.69E-46 |
MS.gene053207 | MS.gene50725 | 0.836776 | 7.68E-57 | -1.69E-46 |
MS.gene053209 | MS.gene50725 | 0.804395 | 2.21E-49 | -1.69E-46 |
MS.gene053213 | MS.gene50725 | 0.821482 | 3.94E-53 | -1.69E-46 |
MS.gene053286 | MS.gene50725 | 0.811179 | 7.97E-51 | -1.69E-46 |
MS.gene053322 | MS.gene50725 | 0.865824 | 4.46E-65 | -1.69E-46 |
MS.gene053449 | MS.gene50725 | 0.838004 | 3.72E-57 | -1.69E-46 |
MS.gene053557 | MS.gene50725 | 0.80503 | 1.62E-49 | -1.69E-46 |
MS.gene053574 | MS.gene50725 | 0.84146 | 4.69E-58 | -1.69E-46 |
MS.gene053579 | MS.gene50725 | 0.820191 | 7.81E-53 | -1.69E-46 |
MS.gene053632 | MS.gene50725 | 0.832418 | 9.56E-56 | -1.69E-46 |
MS.gene053824 | MS.gene50725 | 0.821889 | 3.18E-53 | -1.69E-46 |
MS.gene053912 | MS.gene50725 | 0.833706 | 4.57E-56 | -1.69E-46 |
MS.gene053916 | MS.gene50725 | 0.826061 | 3.33E-54 | -1.69E-46 |
MS.gene054123 | MS.gene50725 | 0.822037 | 2.93E-53 | -1.69E-46 |
MS.gene054408 | MS.gene50725 | 0.83304 | 6.70E-56 | -1.69E-46 |
MS.gene054600 | MS.gene50725 | 0.820558 | 6.44E-53 | -1.69E-46 |
MS.gene054642 | MS.gene50725 | 0.83904 | 2.01E-57 | -1.69E-46 |
MS.gene054927 | MS.gene50725 | 0.8144 | 1.57E-51 | -1.69E-46 |
MS.gene054955 | MS.gene50725 | 0.817066 | 4.00E-52 | -1.69E-46 |
MS.gene05505 | MS.gene50725 | 0.850137 | 2.06E-60 | -1.69E-46 |
MS.gene055116 | MS.gene50725 | 0.822445 | 2.36E-53 | -1.69E-46 |
MS.gene055206 | MS.gene50725 | 0.852739 | 3.79E-61 | -1.69E-46 |
MS.gene055224 | MS.gene50725 | 0.845322 | 4.36E-59 | -1.69E-46 |
MS.gene055289 | MS.gene50725 | 0.823487 | 1.35E-53 | -1.69E-46 |
MS.gene055397 | MS.gene50725 | 0.819273 | 1.27E-52 | -1.69E-46 |
MS.gene055412 | MS.gene50725 | 0.864805 | 9.34E-65 | -1.69E-46 |
MS.gene055499 | MS.gene50725 | 0.818808 | 1.62E-52 | -1.69E-46 |
MS.gene055502 | MS.gene50725 | 0.835369 | 1.75E-56 | -1.69E-46 |
MS.gene055539 | MS.gene50725 | 0.804715 | 1.89E-49 | -1.69E-46 |
MS.gene055577 | MS.gene50725 | 0.822176 | 2.73E-53 | -1.69E-46 |
MS.gene055647 | MS.gene50725 | 0.827233 | 1.75E-54 | -1.69E-46 |
MS.gene055722 | MS.gene50725 | 0.835193 | 1.94E-56 | -1.69E-46 |
MS.gene055748 | MS.gene50725 | 0.802675 | 5.01E-49 | -1.69E-46 |
MS.gene05592 | MS.gene50725 | 0.8477 | 9.80E-60 | -1.69E-46 |
MS.gene055941 | MS.gene50725 | 0.842978 | 1.86E-58 | -1.69E-46 |
MS.gene056166 | MS.gene50725 | 0.811369 | 7.25E-51 | -1.69E-46 |
MS.gene056374 | MS.gene50725 | 0.81393 | 1.99E-51 | -1.69E-46 |
MS.gene056407 | MS.gene50725 | 0.834374 | 3.11E-56 | -1.69E-46 |
MS.gene056410 | MS.gene50725 | 0.81433 | 1.63E-51 | -1.69E-46 |
MS.gene056422 | MS.gene50725 | 0.819263 | 1.27E-52 | -1.69E-46 |
MS.gene056511 | MS.gene50725 | 0.853813 | 1.86E-61 | -1.69E-46 |
MS.gene056549 | MS.gene50725 | 0.830881 | 2.29E-55 | -1.69E-46 |
MS.gene056609 | MS.gene50725 | 0.845676 | 3.50E-59 | -1.69E-46 |
MS.gene05664 | MS.gene50725 | 0.808954 | 2.40E-50 | -1.69E-46 |
MS.gene056657 | MS.gene50725 | 0.810319 | 1.22E-50 | -1.69E-46 |
MS.gene056796 | MS.gene50725 | 0.804831 | 1.79E-49 | -1.69E-46 |
MS.gene056897 | MS.gene50725 | 0.873112 | 1.89E-67 | -1.69E-46 |
MS.gene057011 | MS.gene50725 | 0.862553 | 4.67E-64 | -1.69E-46 |
MS.gene057076 | MS.gene50725 | 0.83007 | 3.61E-55 | -1.69E-46 |
MS.gene057086 | MS.gene50725 | 0.803782 | 2.96E-49 | -1.69E-46 |
MS.gene057124 | MS.gene50725 | 0.847907 | 8.59E-60 | -1.69E-46 |
MS.gene057129 | MS.gene50725 | 0.857358 | 1.72E-62 | -1.69E-46 |
MS.gene057146 | MS.gene50725 | 0.868487 | 6.30E-66 | -1.69E-46 |
MS.gene057331 | MS.gene50725 | 0.824563 | 7.54E-54 | -1.69E-46 |
MS.gene05735 | MS.gene50725 | 0.808449 | 3.08E-50 | -1.69E-46 |
MS.gene057416 | MS.gene50725 | 0.856237 | 3.68E-62 | -1.69E-46 |
MS.gene057658 | MS.gene50725 | 0.804517 | 2.08E-49 | -1.69E-46 |
MS.gene057734 | MS.gene50725 | 0.842 | 3.38E-58 | -1.69E-46 |
MS.gene057856 | MS.gene50725 | 0.818898 | 1.54E-52 | -1.69E-46 |
MS.gene057926 | MS.gene50725 | 0.811661 | 6.26E-51 | -1.69E-46 |
MS.gene058006 | MS.gene50725 | 0.823371 | 1.44E-53 | -1.69E-46 |
MS.gene058007 | MS.gene50725 | 0.82793 | 1.19E-54 | -1.69E-46 |
MS.gene058019 | MS.gene50725 | 0.854723 | 1.02E-61 | -1.69E-46 |
MS.gene058082 | MS.gene50725 | 0.803977 | 2.69E-49 | -1.69E-46 |
MS.gene058130 | MS.gene50725 | 0.811216 | 7.82E-51 | -1.69E-46 |
MS.gene058293 | MS.gene50725 | 0.841965 | 3.45E-58 | -1.69E-46 |
MS.gene058323 | MS.gene50725 | 0.82306 | 1.70E-53 | -1.69E-46 |
MS.gene058365 | MS.gene50725 | 0.804689 | 1.92E-49 | -1.69E-46 |
MS.gene058376 | MS.gene50725 | 0.820634 | 6.18E-53 | -1.69E-46 |
MS.gene05837 | MS.gene50725 | 0.802322 | 5.93E-49 | -1.69E-46 |
MS.gene058419 | MS.gene50725 | 0.829088 | 6.26E-55 | -1.69E-46 |
MS.gene058444 | MS.gene50725 | 0.819387 | 1.19E-52 | -1.69E-46 |
MS.gene058544 | MS.gene50725 | 0.828032 | 1.13E-54 | -1.69E-46 |
MS.gene058660 | MS.gene50725 | 0.851019 | 1.17E-60 | -1.69E-46 |
MS.gene058700 | MS.gene50725 | 0.820257 | 7.55E-53 | -1.69E-46 |
MS.gene058773 | MS.gene50725 | 0.801696 | 7.97E-49 | -1.69E-46 |
MS.gene058787 | MS.gene50725 | 0.816267 | 6.04E-52 | -1.69E-46 |
MS.gene058838 | MS.gene50725 | 0.840318 | 9.34E-58 | -1.69E-46 |
MS.gene05883 | MS.gene50725 | 0.828161 | 1.05E-54 | -1.69E-46 |
MS.gene058928 | MS.gene50725 | 0.844039 | 9.67E-59 | -1.69E-46 |
MS.gene059023 | MS.gene50725 | 0.814786 | 1.29E-51 | -1.69E-46 |
MS.gene059029 | MS.gene50725 | 0.8034 | 3.55E-49 | -1.69E-46 |
MS.gene05907 | MS.gene50725 | 0.81231 | 4.52E-51 | -1.69E-46 |
MS.gene05913 | MS.gene50725 | 0.804921 | 1.71E-49 | -1.69E-46 |
MS.gene059305 | MS.gene50725 | 0.800502 | 1.40E-48 | -1.69E-46 |
MS.gene05934 | MS.gene50725 | 0.858011 | 1.10E-62 | -1.69E-46 |
MS.gene059366 | MS.gene50725 | 0.830656 | 2.60E-55 | -1.69E-46 |
MS.gene059368 | MS.gene50725 | 0.809303 | 2.02E-50 | -1.69E-46 |
MS.gene059455 | MS.gene50725 | 0.829132 | 6.11E-55 | -1.69E-46 |
MS.gene059536 | MS.gene50725 | 0.881154 | 3.04E-70 | -1.69E-46 |
MS.gene059597 | MS.gene50725 | 0.827029 | 1.96E-54 | -1.69E-46 |
MS.gene05959 | MS.gene50725 | 0.84056 | 8.08E-58 | -1.69E-46 |
MS.gene059676 | MS.gene50725 | 0.847394 | 1.19E-59 | -1.69E-46 |
MS.gene059688 | MS.gene50725 | 0.863047 | 3.29E-64 | -1.69E-46 |
MS.gene059692 | MS.gene50725 | 0.847321 | 1.25E-59 | -1.69E-46 |
MS.gene059695 | MS.gene50725 | 0.848111 | 7.55E-60 | -1.69E-46 |
MS.gene059708 | MS.gene50725 | 0.815509 | 8.91E-52 | -1.69E-46 |
MS.gene059711 | MS.gene50725 | 0.81266 | 3.79E-51 | -1.69E-46 |
MS.gene059718 | MS.gene50725 | 0.820796 | 5.67E-53 | -1.69E-46 |
MS.gene059801 | MS.gene50725 | 0.834084 | 3.68E-56 | -1.69E-46 |
MS.gene059902 | MS.gene50725 | 0.827475 | 1.53E-54 | -1.69E-46 |
MS.gene059960 | MS.gene50725 | 0.87562 | 2.67E-68 | -1.69E-46 |
MS.gene060193 | MS.gene50725 | 0.808471 | 3.05E-50 | -1.69E-46 |
MS.gene060403 | MS.gene50725 | 0.84082 | 6.91E-58 | -1.69E-46 |
MS.gene060407 | MS.gene50725 | 0.802703 | 4.95E-49 | -1.69E-46 |
MS.gene060762 | MS.gene50725 | 0.824456 | 7.99E-54 | -1.69E-46 |
MS.gene060804 | MS.gene50725 | 0.870601 | 1.29E-66 | -1.69E-46 |
MS.gene060818 | MS.gene50725 | 0.884428 | 1.93E-71 | -1.69E-46 |
MS.gene060835 | MS.gene50725 | 0.835927 | 1.26E-56 | -1.69E-46 |
MS.gene060837 | MS.gene50725 | 0.847089 | 1.44E-59 | -1.69E-46 |
MS.gene06092 | MS.gene50725 | 0.857248 | 1.86E-62 | -1.69E-46 |
MS.gene061041 | MS.gene50725 | 0.865937 | 4.11E-65 | -1.69E-46 |
MS.gene061051 | MS.gene50725 | -0.831837 | 1.33E-55 | -1.69E-46 |
MS.gene061150 | MS.gene50725 | 0.834782 | 2.46E-56 | -1.69E-46 |
MS.gene061154 | MS.gene50725 | 0.813841 | 2.09E-51 | -1.69E-46 |
MS.gene061200 | MS.gene50725 | 0.867387 | 1.42E-65 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50725.t1 | MTR_4g071330 | 96.407 | 167 | 6 | 0 | 1 | 167 | 119 | 285 | 3.92e-112 | 320 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50725.t1 | AT2G21350 | 59.200 | 125 | 47 | 2 | 3 | 127 | 99 | 219 | 2.16e-42 | 141 |
MS.gene50725.t1 | AT4G39040 | 62.500 | 112 | 42 | 0 | 27 | 138 | 153 | 264 | 8.21e-37 | 128 |
MS.gene50725.t1 | AT4G39040 | 62.500 | 112 | 42 | 0 | 27 | 138 | 153 | 264 | 9.42e-37 | 128 |
Find 45 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGAACCCCGCCGTGATGATT+TGG | 0.238788 | 4.3:+34031734 | None:intergenic |
GACTAGGCCTGTATAAAATA+AGG | 0.255349 | 4.3:+34031945 | None:intergenic |
TGGGTCTTATGCACATAGTT+TGG | 0.267978 | 4.3:-34033648 | MS.gene50725:CDS |
GGGTCTTATGCACATAGTTT+GGG | 0.294992 | 4.3:-34033647 | MS.gene50725:CDS |
AACGAAGACTACTAATAAAC+AGG | 0.325327 | 4.3:-34031856 | MS.gene50725:CDS |
TAAGAAGTTCATTAGCTTCA+AGG | 0.331752 | 4.3:+34033552 | None:intergenic |
TGAAGCTAATGAACTTCTTA+AGG | 0.332588 | 4.3:-34033549 | MS.gene50725:intron |
GAACCCCGCCGTGATGATTT+GGG | 0.368695 | 4.3:+34031735 | None:intergenic |
GAGAGAAGAGAGATTGAAAC+TGG | 0.370203 | 4.3:-34033708 | MS.gene50725:CDS |
ACACAATTGGTGGGTAAGTC+TGG | 0.392170 | 4.3:-34033611 | MS.gene50725:CDS |
AAATAAGGGTTCGACCAATC+TGG | 0.423091 | 4.3:+34031960 | None:intergenic |
CATGGAAAGCGAGAGGAAAT+AGG | 0.424887 | 4.3:-34031710 | MS.gene50725:CDS |
ACTGAAAGCAGTAATAAGAT+TGG | 0.440308 | 4.3:+34033580 | None:intergenic |
TCAGTGACCGTTGGCCAGAT+TGG | 0.443479 | 4.3:-34031974 | MS.gene50725:CDS |
CTATTTCCTCTCGCTTTCCA+TGG | 0.468374 | 4.3:+34031711 | None:intergenic |
TCTTCTCTCTTTGTCACCAA+TGG | 0.477641 | 4.3:+34033722 | None:intergenic |
GCCTAGTCTCTCCAAATTGA+AGG | 0.481817 | 4.3:-34031930 | MS.gene50725:CDS |
CTGAAAGCAGTAATAAGATT+GGG | 0.482185 | 4.3:+34033581 | None:intergenic |
ACTAGGCCTGTATAAAATAA+GGG | 0.483984 | 4.3:+34031946 | None:intergenic |
CTTTCCTTCACACTCAAACT+CGG | 0.486915 | 4.3:+34033680 | None:intergenic |
AAAATACACGGGAGTTGTCC+AGG | 0.506780 | 4.3:-34032040 | MS.gene50725:CDS |
AAGAAAAGAAGAAACAAGTT+CGG | 0.507063 | 4.3:-34031904 | MS.gene50725:CDS |
AGAAGATGTTGTGAAGCAGT+TGG | 0.507699 | 4.3:-34032011 | MS.gene50725:CDS |
AAGCAGTTGGAAGAAGCAAC+TGG | 0.518116 | 4.3:-34031998 | MS.gene50725:CDS |
AGAACCCAAATCATCACGGC+GGG | 0.527975 | 4.3:-34031739 | MS.gene50725:CDS |
AAAGCTTAGCACACAATTGG+TGG | 0.528041 | 4.3:-34033621 | MS.gene50725:CDS |
GTGAAGGAAAGGAAAGAACT+TGG | 0.535787 | 4.3:-34033668 | MS.gene50725:CDS |
TGAAACTACATCGTCGCCAT+TGG | 0.556171 | 4.3:-34033738 | MS.gene50725:CDS |
CGAGTTTGAGTGTGAAGGAA+AGG | 0.578460 | 4.3:-34033679 | MS.gene50725:CDS |
CATCACGGCGGGGTTCGCCA+TGG | 0.588212 | 4.3:-34031728 | MS.gene50725:CDS |
GGTCTTATGCACATAGTTTG+GGG | 0.589830 | 4.3:-34033646 | MS.gene50725:CDS |
ACAACATCTTCTAACTCACC+TGG | 0.594667 | 4.3:+34032022 | None:intergenic |
CATTTACAGATTAAAATACA+CGG | 0.607337 | 4.3:-34032052 | MS.gene50725:intron |
ACCTTCAATTTGGAGAGACT+AGG | 0.627384 | 4.3:+34031929 | None:intergenic |
AAGCTTAGCACACAATTGGT+GGG | 0.629215 | 4.3:-34033620 | MS.gene50725:CDS |
GCAACTGGTTCAGTGACCGT+TGG | 0.632856 | 4.3:-34031983 | MS.gene50725:CDS |
ATTTACAGATTAAAATACAC+GGG | 0.633460 | 4.3:-34032051 | MS.gene50725:intron |
TGAAGGAAAGGAAAGAACTT+GGG | 0.637854 | 4.3:-34033667 | MS.gene50725:CDS |
AACAAGAACCCAAATCATCA+CGG | 0.648444 | 4.3:-34031743 | MS.gene50725:CDS |
ACGAAGACTACTAATAAACA+GGG | 0.650052 | 4.3:-34031855 | MS.gene50725:intron |
GGTTCGACCAATCTGGCCAA+CGG | 0.657872 | 4.3:+34031967 | None:intergenic |
GGTTCGCCATGGAAAGCGAG+AGG | 0.664200 | 4.3:-34031717 | MS.gene50725:CDS |
GAACCCAAATCATCACGGCG+GGG | 0.716097 | 4.3:-34031738 | MS.gene50725:CDS |
AGTGCCGAGTTTGAGTGTGA+AGG | 0.720831 | 4.3:-34033684 | MS.gene50725:CDS |
AAGAACCCAAATCATCACGG+CGG | 0.750849 | 4.3:-34031740 | MS.gene50725:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTATTGTTTGATATATTT+TGG | - | chr4.3:34032000-34032019 | MS.gene50725:CDS | 15.0% |
!!! | TTATAATCATCTTTATTTGA+AGG | - | chr4.3:34033103-34033122 | MS.gene50725:intron | 15.0% |
!! | ATAGATACTGAGAATAATTT+AGG | + | chr4.3:34032639-34032658 | None:intergenic | 20.0% |
!! | ATTTACAGATTAAAATACAC+GGG | - | chr4.3:34033405-34033424 | MS.gene50725:intron | 20.0% |
!! | CATTTACAGATTAAAATACA+CGG | - | chr4.3:34033404-34033423 | MS.gene50725:intron | 20.0% |
!! | TTGTCATTGATGTTAATTAT+TGG | - | chr4.3:34032195-34032214 | MS.gene50725:intron | 20.0% |
!!! | ATCAATATATAGACCATTTT+AGG | + | chr4.3:34032959-34032978 | None:intergenic | 20.0% |
!!! | ATTAATTTGTACTTGCAATT+TGG | - | chr4.3:34033377-34033396 | MS.gene50725:intron | 20.0% |
!!! | GATATATTTTGGTAATACAT+GGG | - | chr4.3:34032011-34032030 | MS.gene50725:CDS | 20.0% |
!!! | TGATATATTTTGGTAATACA+TGG | - | chr4.3:34032010-34032029 | MS.gene50725:CDS | 20.0% |
! | AAAGTGAATGCAAATTCATT+AGG | - | chr4.3:34032251-34032270 | MS.gene50725:intron | 25.0% |
! | AAGAAAAGAAGAAACAAGTT+CGG | - | chr4.3:34033552-34033571 | MS.gene50725:CDS | 25.0% |
! | AATAGCAGATTGTTTCAATT+CGG | - | chr4.3:34032307-34032326 | MS.gene50725:intron | 25.0% |
! | AATTACAGATGCTAAACATA+CGG | + | chr4.3:34032147-34032166 | None:intergenic | 25.0% |
! | ACAAAATTATTGTCAACTAG+TGG | + | chr4.3:34032363-34032382 | None:intergenic | 25.0% |
! | ACAAAGCAATATACTTTCAT+TGG | - | chr4.3:34033236-34033255 | MS.gene50725:intron | 25.0% |
! | AGATGGTATTTAACAACATT+GGG | - | chr4.3:34032456-34032475 | MS.gene50725:intron | 25.0% |
! | CTGAGAATAATTTAGGAAAA+TGG | + | chr4.3:34032632-34032651 | None:intergenic | 25.0% |
! | TAATGAACTTCTTAAGGTAA+TGG | - | chr4.3:34031913-34031932 | MS.gene50725:CDS | 25.0% |
! | TAGATGGTATTTAACAACAT+TGG | - | chr4.3:34032455-34032474 | MS.gene50725:intron | 25.0% |
! | TTGTTAAATACCATCTATAG+TGG | + | chr4.3:34032452-34032471 | None:intergenic | 25.0% |
!! | AATCATCTTTATTTGAAGGA+GGG | - | chr4.3:34033107-34033126 | MS.gene50725:intron | 25.0% |
!! | ACTTCAGAGTGTAATTTTTA+TGG | - | chr4.3:34033077-34033096 | MS.gene50725:intron | 25.0% |
!! | GATTTAGCAAGAGTATATTT+AGG | - | chr4.3:34032514-34032533 | MS.gene50725:intron | 25.0% |
!! | TAATCATCTTTATTTGAAGG+AGG | - | chr4.3:34033106-34033125 | MS.gene50725:intron | 25.0% |
!!! | AATGTGTTATTGTTTTCATG+TGG | - | chr4.3:34032111-34032130 | MS.gene50725:intron | 25.0% |
!!! | ACTTGTGCATTTTAATGATT+AGG | + | chr4.3:34033329-34033348 | None:intergenic | 25.0% |
AACGAAGACTACTAATAAAC+AGG | - | chr4.3:34033600-34033619 | MS.gene50725:CDS | 30.0% | |
ACGAAGACTACTAATAAACA+GGG | - | chr4.3:34033601-34033620 | MS.gene50725:CDS | 30.0% | |
ACTAGGCCTGTATAAAATAA+GGG | + | chr4.3:34033513-34033532 | None:intergenic | 30.0% | |
ACTGAAAGCAGTAATAAGAT+TGG | + | chr4.3:34031879-34031898 | None:intergenic | 30.0% | |
AGAGTATATTTAGGAACTAG+TGG | - | chr4.3:34032523-34032542 | MS.gene50725:intron | 30.0% | |
CAATACAAATAAATGGCCTT+GGG | - | chr4.3:34032479-34032498 | MS.gene50725:intron | 30.0% | |
CATTGGGCAATACAAATAAA+TGG | - | chr4.3:34032472-34032491 | MS.gene50725:intron | 30.0% | |
CTGAAAGCAGTAATAAGATT+GGG | + | chr4.3:34031878-34031897 | None:intergenic | 30.0% | |
GAAGAGATCAAAATAATTCG+AGG | + | chr4.3:34033653-34033672 | None:intergenic | 30.0% | |
TACTGTAAAACTGTTCTACA+CGG | - | chr4.3:34033263-34033282 | MS.gene50725:intron | 30.0% | |
TATAACTTCAAGTGTCATGT+TGG | + | chr4.3:34032597-34032616 | None:intergenic | 30.0% | |
TGAAGCTAATGAACTTCTTA+AGG | - | chr4.3:34031907-34031926 | MS.gene50725:CDS | 30.0% | |
TGTAAAACGATTGTTTGAGT+TGG | - | chr4.3:34032714-34032733 | MS.gene50725:intron | 30.0% | |
! | AATACAAATAAATGGCCTTG+GGG | - | chr4.3:34032480-34032499 | MS.gene50725:intron | 30.0% |
! | ATCATCTTTATTTGAAGGAG+GGG | - | chr4.3:34033108-34033127 | MS.gene50725:intron | 30.0% |
! | CTGAAAAATGTCTCTGTTTT+CGG | - | chr4.3:34031968-34031987 | MS.gene50725:CDS | 30.0% |
! | CTTTTCTTCTACCTTCAATT+TGG | + | chr4.3:34033540-34033559 | None:intergenic | 30.0% |
! | GGTCTATATATTGATTAGCT+GGG | - | chr4.3:34032964-34032983 | MS.gene50725:intron | 30.0% |
! | TAAGAAGTTCATTAGCTTCA+AGG | + | chr4.3:34031907-34031926 | None:intergenic | 30.0% |
! | TGGTCTATATATTGATTAGC+TGG | - | chr4.3:34032963-34032982 | MS.gene50725:intron | 30.0% |
!! | TGTGCATTTTAATGATTAGG+AGG | + | chr4.3:34033326-34033345 | None:intergenic | 30.0% |
AACAAGAACCCAAATCATCA+CGG | - | chr4.3:34033713-34033732 | MS.gene50725:CDS | 35.0% | |
ACATACGCAATCATCAAACA+AGG | + | chr4.3:34032663-34032682 | None:intergenic | 35.0% | |
ACCGACACTTTAGATTGAAA+GGG | - | chr4.3:34032561-34032580 | MS.gene50725:intron | 35.0% | |
AGACTACTAATAAACAGGGT+AGG | - | chr4.3:34033605-34033624 | MS.gene50725:CDS | 35.0% | |
AGAGAAAACACACGATGAAA+AGG | + | chr4.3:34033300-34033319 | None:intergenic | 35.0% | |
AGATGCAAAGATTGTGAACA+AGG | + | chr4.3:34033356-34033375 | None:intergenic | 35.0% | |
ATCTTATTCTAGTGTGGAAG+TGG | - | chr4.3:34032835-34032854 | MS.gene50725:intron | 35.0% | |
CAAGAACATTAGTGAAGCAT+AGG | + | chr4.3:34033675-34033694 | None:intergenic | 35.0% | |
CACGATGAAAAGGATATGTA+TGG | + | chr4.3:34033290-34033309 | None:intergenic | 35.0% | |
CATGCAATCTTATTCTAGTG+TGG | - | chr4.3:34032829-34032848 | MS.gene50725:intron | 35.0% | |
CTAATAAACAGGGTAGGTTA+TGG | - | chr4.3:34033611-34033630 | MS.gene50725:CDS | 35.0% | |
GAAAAAGCTTAGCACACAAT+TGG | - | chr4.3:34031832-34031851 | MS.gene50725:intron | 35.0% | |
GACTAGGCCTGTATAAAATA+AGG | + | chr4.3:34033514-34033533 | None:intergenic | 35.0% | |
GCAATACAAATAAATGGCCT+TGG | - | chr4.3:34032478-34032497 | MS.gene50725:intron | 35.0% | |
GTAGGTGTATGTGTTCTTTA+AGG | - | chr4.3:34032051-34032070 | MS.gene50725:intron | 35.0% | |
TGAAGGAAAGGAAAGAACTT+GGG | - | chr4.3:34031789-34031808 | MS.gene50725:intron | 35.0% | |
TGCGTGATTCAATTATGTCT+CGG | - | chr4.3:34033037-34033056 | MS.gene50725:intron | 35.0% | |
! | AAATGTCTCTGTTTTCGGTT+TGG | - | chr4.3:34031973-34031992 | MS.gene50725:CDS | 35.0% |
! | ACCCTTTCAATCTAAAGTGT+CGG | + | chr4.3:34032565-34032584 | None:intergenic | 35.0% |
! | ATACAAATAAATGGCCTTGG+GGG | - | chr4.3:34032481-34032500 | MS.gene50725:intron | 35.0% |
! | CGTTTTACATACATCAAGTC+TGG | + | chr4.3:34032703-34032722 | None:intergenic | 35.0% |
! | CTTAAGTGTTGCACCTAAAA+TGG | - | chr4.3:34032943-34032962 | MS.gene50725:intron | 35.0% |
!! | AACGATTGTTTGAGTTGGTT+TGG | - | chr4.3:34032719-34032738 | MS.gene50725:intron | 35.0% |
!! | ACAAGTTCGGAAACTTTTTC+TGG | - | chr4.3:34033565-34033584 | MS.gene50725:CDS | 35.0% |
!! | TTTTGGTAATACATGGGAAG+AGG | - | chr4.3:34032017-34032036 | MS.gene50725:CDS | 35.0% |
!!! | GTCGAACCCTTATTTTATAC+AGG | - | chr4.3:34033504-34033523 | MS.gene50725:intron | 35.0% |
AAAGCTTAGCACACAATTGG+TGG | - | chr4.3:34031835-34031854 | MS.gene50725:intron | 40.0% | |
AAATAAGGGTTCGACCAATC+TGG | + | chr4.3:34033499-34033518 | None:intergenic | 40.0% | |
AAGCTTAGCACACAATTGGT+GGG | - | chr4.3:34031836-34031855 | MS.gene50725:intron | 40.0% | |
AATCCAACAAAATACCCCCA+AGG | + | chr4.3:34032498-34032517 | None:intergenic | 40.0% | |
AATGCCAGAGTTGTCAATTG+TGG | - | chr4.3:34032275-34032294 | MS.gene50725:intron | 40.0% | |
ACAACATCTTCTAACTCACC+TGG | + | chr4.3:34033437-34033456 | None:intergenic | 40.0% | |
ACCTTCAATTTGGAGAGACT+AGG | + | chr4.3:34033530-34033549 | None:intergenic | 40.0% | |
AGAAGATGTTGTGAAGCAGT+TGG | - | chr4.3:34033445-34033464 | MS.gene50725:intron | 40.0% | |
CACCGACACTTTAGATTGAA+AGG | - | chr4.3:34032560-34032579 | MS.gene50725:intron | 40.0% | |
CGTGATTCAATTATGTCTCG+GGG | - | chr4.3:34033039-34033058 | MS.gene50725:intron | 40.0% | |
CTATCCACAATTGACAACTC+TGG | + | chr4.3:34032282-34032301 | None:intergenic | 40.0% | |
CTTTCCTTCACACTCAAACT+CGG | + | chr4.3:34031779-34031798 | None:intergenic | 40.0% | |
GAGAGAAGAGAGATTGAAAC+TGG | - | chr4.3:34031748-34031767 | MS.gene50725:CDS | 40.0% | |
GCGTGATTCAATTATGTCTC+GGG | - | chr4.3:34033038-34033057 | MS.gene50725:intron | 40.0% | |
GTGAAGGAAAGGAAAGAACT+TGG | - | chr4.3:34031788-34031807 | MS.gene50725:intron | 40.0% | |
GTGATTCAATTATGTCTCGG+GGG | - | chr4.3:34033040-34033059 | MS.gene50725:intron | 40.0% | |
TACATGGGAAGAGGAATTTG+AGG | - | chr4.3:34032026-34032045 | MS.gene50725:CDS | 40.0% | |
TCAAGTGTCATGTTGGACAT+CGG | + | chr4.3:34032590-34032609 | None:intergenic | 40.0% | |
TCTTCTCTCTTTGTCACCAA+TGG | + | chr4.3:34031737-34031756 | None:intergenic | 40.0% | |
TCTTGTGAAACTGCAGAGTA+GGG | - | chr4.3:34033690-34033709 | MS.gene50725:CDS | 40.0% | |
TGCAATAGTCTTTGCAGTCT+TGG | - | chr4.3:34032742-34032761 | MS.gene50725:intron | 40.0% | |
TGTGTTTGACAACTTTCCGT+TGG | - | chr4.3:34032883-34032902 | MS.gene50725:intron | 40.0% | |
TTCTTGTGAAACTGCAGAGT+AGG | - | chr4.3:34033689-34033708 | MS.gene50725:CDS | 40.0% | |
TTGTCAACTAGTGGTTACAG+TGG | + | chr4.3:34032354-34032373 | None:intergenic | 40.0% | |
! | GGGTCTTATGCACATAGTTT+GGG | - | chr4.3:34031809-34031828 | MS.gene50725:intron | 40.0% |
! | GGTCTTATGCACATAGTTTG+GGG | - | chr4.3:34031810-34031829 | MS.gene50725:intron | 40.0% |
! | TGGGTCTTATGCACATAGTT+TGG | - | chr4.3:34031808-34031827 | MS.gene50725:intron | 40.0% |
!! | GTCCAAATTCCGATTTGCTA+CGG | - | chr4.3:34032416-34032435 | MS.gene50725:intron | 40.0% |
!!! | TCTTGGTGCTTTTTGATGGT+TGG | - | chr4.3:34032759-34032778 | MS.gene50725:intron | 40.0% |
AAAATACACGGGAGTTGTCC+AGG | - | chr4.3:34033416-34033435 | MS.gene50725:intron | 45.0% | |
AAGAACCCAAATCATCACGG+CGG | - | chr4.3:34033716-34033735 | MS.gene50725:CDS | 45.0% | |
AAGCAGTTGGAAGAAGCAAC+TGG | - | chr4.3:34033458-34033477 | MS.gene50725:intron | 45.0% | |
ATGGGAAGAGGAATTTGAGG+TGG | - | chr4.3:34032029-34032048 | MS.gene50725:CDS | 45.0% | |
CACCGTAGCAAATCGGAATT+TGG | + | chr4.3:34032421-34032440 | None:intergenic | 45.0% | |
CATGGAAAGCGAGAGGAAAT+AGG | - | chr4.3:34033746-34033765 | MS.gene50725:CDS | 45.0% | |
CGAGTTTGAGTGTGAAGGAA+AGG | - | chr4.3:34031777-34031796 | MS.gene50725:intron | 45.0% | |
CTATTTCCTCTCGCTTTCCA+TGG | + | chr4.3:34033748-34033767 | None:intergenic | 45.0% | |
GCCTAGTCTCTCCAAATTGA+AGG | - | chr4.3:34033526-34033545 | MS.gene50725:intron | 45.0% | |
TGAAACTACATCGTCGCCAT+TGG | - | chr4.3:34031718-34031737 | MS.gene50725:CDS | 45.0% | |
! | ACACAATTGGTGGGTAAGTC+TGG | - | chr4.3:34031845-34031864 | MS.gene50725:intron | 45.0% |
! | GAAGAGGAATTTGAGGTGGT+AGG | - | chr4.3:34032033-34032052 | MS.gene50725:CDS | 45.0% |
!! | CAAATTCCGATTTGCTACGG+TGG | - | chr4.3:34032419-34032438 | MS.gene50725:intron | 45.0% |
!!! | GCAGTCTTGGTGCTTTTTGA+TGG | - | chr4.3:34032755-34032774 | MS.gene50725:intron | 45.0% |
ACAGTCAAACCAGTGGCCAA+CGG | + | chr4.3:34032902-34032921 | None:intergenic | 50.0% | |
AGAACCCAAATCATCACGGC+GGG | - | chr4.3:34033717-34033736 | MS.gene50725:CDS | 50.0% | |
GTGGCATTGCATGCAAAGCA+TGG | - | chr4.3:34032854-34032873 | MS.gene50725:intron | 50.0% | |
TCCAGTGACAGTCAAACCAG+TGG | + | chr4.3:34032909-34032928 | None:intergenic | 50.0% | |
! | AGTGCCGAGTTTGAGTGTGA+AGG | - | chr4.3:34031772-34031791 | MS.gene50725:intron | 50.0% |
!!! | TGGCCTTGGGGGTATTTTGT+TGG | - | chr4.3:34032492-34032511 | MS.gene50725:intron | 50.0% |
GAACCCAAATCATCACGGCG+GGG | - | chr4.3:34033718-34033737 | MS.gene50725:CDS | 55.0% | |
GAACCCCGCCGTGATGATTT+GGG | + | chr4.3:34033724-34033743 | None:intergenic | 55.0% | |
GACAACTTTCCGTTGGCCAC+TGG | - | chr4.3:34032890-34032909 | MS.gene50725:intron | 55.0% | |
GCCAGACCACCGTAGCAAAT+CGG | + | chr4.3:34032428-34032447 | None:intergenic | 55.0% | |
GGTTCGACCAATCTGGCCAA+CGG | + | chr4.3:34033492-34033511 | None:intergenic | 55.0% | |
TCAGTGACCGTTGGCCAGAT+TGG | - | chr4.3:34033482-34033501 | MS.gene50725:intron | 55.0% | |
TGGTCTGGCGCCACTATAGA+TGG | - | chr4.3:34032439-34032458 | MS.gene50725:intron | 55.0% | |
TTGCAGCAGCTGCGTGACAA+TGG | + | chr4.3:34032788-34032807 | None:intergenic | 55.0% | |
! | GCAACTGGTTCAGTGACCGT+TGG | - | chr4.3:34033473-34033492 | MS.gene50725:intron | 55.0% |
!! | GCCACTGGTTTGACTGTCAC+TGG | - | chr4.3:34032905-34032924 | MS.gene50725:intron | 55.0% |
!! | TCCGATTTGCTACGGTGGTC+TGG | - | chr4.3:34032424-34032443 | MS.gene50725:intron | 55.0% |
CGAACCCCGCCGTGATGATT+TGG | + | chr4.3:34033725-34033744 | None:intergenic | 60.0% | |
GGTTCGCCATGGAAAGCGAG+AGG | - | chr4.3:34033739-34033758 | MS.gene50725:CDS | 60.0% | |
GTCACGCAGCTGCTGCAAAG+TGG | - | chr4.3:34032790-34032809 | MS.gene50725:intron | 60.0% | |
CATCACGGCGGGGTTCGCCA+TGG | - | chr4.3:34033728-34033747 | MS.gene50725:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 34031704 | 34033774 | 34031704 | ID=MS.gene50725 |
chr4.3 | mRNA | 34031704 | 34033774 | 34031704 | ID=MS.gene50725.t1;Parent=MS.gene50725 |
chr4.3 | exon | 34033550 | 34033774 | 34033550 | ID=MS.gene50725.t1.exon1;Parent=MS.gene50725.t1 |
chr4.3 | CDS | 34033550 | 34033774 | 34033550 | ID=cds.MS.gene50725.t1;Parent=MS.gene50725.t1 |
chr4.3 | exon | 34031856 | 34032065 | 34031856 | ID=MS.gene50725.t1.exon2;Parent=MS.gene50725.t1 |
chr4.3 | CDS | 34031856 | 34032065 | 34031856 | ID=cds.MS.gene50725.t1;Parent=MS.gene50725.t1 |
chr4.3 | exon | 34031704 | 34031772 | 34031704 | ID=MS.gene50725.t1.exon3;Parent=MS.gene50725.t1 |
chr4.3 | CDS | 34031704 | 34031772 | 34031704 | ID=cds.MS.gene50725.t1;Parent=MS.gene50725.t1 |
Gene Sequence |
Protein sequence |