AlfalfaGEDB | MS.gene053790

M. sativa cultivar XinJiangDaYe / MS.gene053790

KEGG: K02910
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01198.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053790.t1	XP_003630662.2	86.8	121	1	1	1	106	1	121	1.50E-46	195.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053790.t1	Q9M573	74.4	121	16	1	1	106	1	121	3.5e-41	168.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053790.t1	B7FGL4	86.8	121	1	1	1	106	1	121	1.0e-46	195.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene053790	MS.gene031484	PPI
MS.gene068781	MS.gene053790	PPI
MS.gene073324	MS.gene053790	PPI
MS.gene012331	MS.gene053790	PPI
MS.gene20153	MS.gene053790	PPI
MS.gene55890	MS.gene053790	PPI
MS.gene96312	MS.gene053790	PPI
MS.gene053790	MS.gene20153	PPI
MS.gene053790	MS.gene99599	PPI
MS.gene065652	MS.gene053790	PPI
MS.gene09188	MS.gene053790	PPI
MS.gene065189	MS.gene053790	PPI
MS.gene92970	MS.gene053790	PPI
MS.gene09187	MS.gene053790	PPI
MS.gene053790	MS.gene66352	PPI
MS.gene012333	MS.gene053790	PPI
MS.gene059846	MS.gene053790	PPI
MS.gene053790	MS.gene96780	PPI
MS.gene053790	MS.gene064028	PPI
MS.gene053790	MS.gene030304	PPI
MS.gene053790	MS.gene75054	PPI
MS.gene053790	MS.gene09046	PPI
MS.gene053790	MS.gene57660	PPI
MS.gene023381	MS.gene053790	PPI
MS.gene053790	MS.gene031406	PPI
MS.gene08260	MS.gene053790	PPI
MS.gene029547	MS.gene053790	PPI
MS.gene053790	MS.gene56525	PPI
MS.gene049030	MS.gene053790	PPI
MS.gene006800	MS.gene053790	PPI
MS.gene053790	MS.gene08259	PPI
MS.gene06169	MS.gene053790	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053790.t1	MTR_8g101980	86.777	121	1	1	1	106	1	121	1.02e-68	201
MS.gene053790.t1	MTR_6g091630	84.298	121	4	1	1	106	1	121	1.20e-66	196

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053790.t1	AT5G56710	70.248	121	19	2	1	106	1	119	4.46e-53	162
MS.gene053790.t1	AT4G26230	69.421	121	20	2	1	106	1	119	1.54e-52	160
MS.gene053790.t1	AT2G19740	69.828	116	20	1	6	106	4	119	8.90e-52	159
MS.gene053790.t1	AT5G56710	59.434	106	22	2	1	106	1	85	1.24e-34	114

Find 45 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTGATCTCCTTTATTGCTTT+AGG	0.186329	5.1:-44983292	None:intergenic
AGTTTGCCCAAAAGGCTATT+TGG	0.248252	5.1:+44983317	MS.gene053790:CDS
CAAGCCTTTGAGTTCTTCCT+TGG	0.279778	5.1:-44983455	None:intergenic
CCTGGCTCCAAATAGCCTTT+TGG	0.287456	5.1:-44983324	None:intergenic
GAAAGCTCCTAAAGCAATAA+AGG	0.311659	5.1:+44983285	MS.gene053790:CDS
CTCATCATCGTTCCTCTTGC+GGG	0.315756	5.1:-44983386	None:intergenic
GAAGTGTCCCAAGGAGGGTT+AGG	0.369762	5.1:+44983353	MS.gene053790:CDS
AAGCCTTTGAGTTCTTCCTT+GGG	0.394369	5.1:-44983454	None:intergenic
GAGGCGTTTGTGGAGGTTGA+TGG	0.411978	5.1:-44983242	None:intergenic
GATCAGGAAGTTTGCCCAAA+AGG	0.422618	5.1:+44983309	MS.gene053790:CDS
TTGGGACACTTCTGATCCCC+TGG	0.423986	5.1:-44983342	None:intergenic
ATGCGTACCCTAACCCTCCT+TGG	0.424283	5.1:-44983361	None:intergenic
CTAAAGCAATAAAGGAGATC+AGG	0.445899	5.1:+44983293	MS.gene053790:CDS
CAAGGAAGAACTCAAAGGCT+TGG	0.450797	5.1:+44983456	MS.gene053790:CDS
CCAAAAGGCTATTTGGAGCC+AGG	0.455966	5.1:+44983324	MS.gene053790:CDS
TGCAGCCATGGAGGCGTTTG+TGG	0.456342	5.1:-44983252	None:intergenic
CCTCATCATCGTTCCTCTTG+CGG	0.459607	5.1:-44983387	None:intergenic
TGCGTACCCTAACCCTCCTT+GGG	0.479198	5.1:-44983360	None:intergenic
AAGGAAGAACTCAAAGGCTT+GGG	0.487684	5.1:+44983457	MS.gene053790:CDS
GTGAAAATGGTGGAGAAGAC+CGG	0.499433	5.1:+44983181	None:intergenic
GAGGTTGATGGTGTACTCTC+TGG	0.499941	5.1:-44983230	None:intergenic
GACAACCTCTTCCTTCCTAC+TGG	0.501117	5.1:-44983206	None:intergenic
AAGTGTCCCAAGGAGGGTTA+GGG	0.502241	5.1:+44983354	MS.gene053790:CDS
CTCTTCCTTCCTACTGGCGC+CGG	0.517625	5.1:-44983200	None:intergenic
CGGCGCCAGTAGGAAGGAAG+AGG	0.519836	5.1:+44983201	MS.gene053790:CDS
TCTTCTTAAATGTGCAGCCA+TGG	0.524032	5.1:-44983264	None:intergenic
AGCCTTTGAGTTCTTCCTTG+GGG	0.534682	5.1:-44983453	None:intergenic
CACAAAGGTTATTGATGATG+AGG	0.542190	5.1:+44983480	MS.gene053790:CDS
GAACGATGATGAGGATGCTA+AGG	0.543980	5.1:+44983396	MS.gene053790:CDS
CAAAAGGCTATTTGGAGCCA+GGG	0.555648	5.1:+44983325	MS.gene053790:CDS
GAAGACCGGCGCCAGTAGGA+AGG	0.555962	5.1:+44983195	MS.gene053790:CDS
AACCTCCACAAACGCCTCCA+TGG	0.560698	5.1:+44983247	MS.gene053790:CDS
TTCCTTGGGGATTTCAACAA+CGG	0.577011	5.1:-44983440	None:intergenic
TGGAGAAGACCGGCGCCAGT+AGG	0.607373	5.1:+44983191	MS.gene053790:CDS
CCGCAAGAGGAACGATGATG+AGG	0.607958	5.1:+44983387	MS.gene053790:CDS
GATCAGAAGTGTCCCAAGGA+GGG	0.621367	5.1:+44983348	MS.gene053790:CDS
GGGTACGCATTGCCCGCAAG+AGG	0.627432	5.1:+44983374	MS.gene053790:CDS
TACCGTTGTTGAAATCCCCA+AGG	0.634406	5.1:+44983438	MS.gene053790:CDS
AGCCATGGAGGCGTTTGTGG+AGG	0.637282	5.1:-44983249	None:intergenic
AGGGGATCAGAAGTGTCCCA+AGG	0.639457	5.1:+44983344	MS.gene053790:CDS
ACTCAAAGGCTTGGGCACAA+AGG	0.642962	5.1:+44983465	MS.gene053790:CDS
ATCCCCAAGGAAGAACTCAA+AGG	0.650756	5.1:+44983451	MS.gene053790:CDS
AAAAGGCTATTTGGAGCCAG+GGG	0.653360	5.1:+44983326	MS.gene053790:CDS
TCTTAAATGTGCAGCCATGG+AGG	0.665182	5.1:-44983261	None:intergenic
GGATCAGAAGTGTCCCAAGG+AGG	0.680908	5.1:+44983347	MS.gene053790:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	CTAAAGCAATAAAGGAGATC+AGG	+	chr5.1:44983293-44983312	MS.gene053790:CDS	35.0%
	CTGATCTCCTTTATTGCTTT+AGG	-	chr5.1:44983295-44983314	None:intergenic	35.0%
	GAAAGCTCCTAAAGCAATAA+AGG	+	chr5.1:44983285-44983304	MS.gene053790:CDS	35.0%
!!	CACAAAGGTTATTGATGATG+AGG	+	chr5.1:44983480-44983499	MS.gene053790:CDS	35.0%
	AAGGAAGAACTCAAAGGCTT+GGG	+	chr5.1:44983457-44983476	MS.gene053790:CDS	40.0%
	AGTTTGCCCAAAAGGCTATT+TGG	+	chr5.1:44983317-44983336	MS.gene053790:CDS	40.0%
	TCTTCTTAAATGTGCAGCCA+TGG	-	chr5.1:44983267-44983286	None:intergenic	40.0%
	TTCCTTGGGGATTTCAACAA+CGG	-	chr5.1:44983443-44983462	None:intergenic	40.0%
!	AAGCCTTTGAGTTCTTCCTT+GGG	-	chr5.1:44983457-44983476	None:intergenic	40.0%
	ATCCCCAAGGAAGAACTCAA+AGG	+	chr5.1:44983451-44983470	MS.gene053790:CDS	45.0%
	CAAGGAAGAACTCAAAGGCT+TGG	+	chr5.1:44983456-44983475	MS.gene053790:CDS	45.0%
	GAACGATGATGAGGATGCTA+AGG	+	chr5.1:44983396-44983415	MS.gene053790:CDS	45.0%
	GATCAGGAAGTTTGCCCAAA+AGG	+	chr5.1:44983309-44983328	MS.gene053790:CDS	45.0%
	TACCGTTGTTGAAATCCCCA+AGG	+	chr5.1:44983438-44983457	MS.gene053790:CDS	45.0%
	TCTTAAATGTGCAGCCATGG+AGG	-	chr5.1:44983264-44983283	None:intergenic	45.0%
!	AAAAGGCTATTTGGAGCCAG+GGG	+	chr5.1:44983326-44983345	MS.gene053790:CDS	45.0%
!	AGCCTTTGAGTTCTTCCTTG+GGG	-	chr5.1:44983456-44983475	None:intergenic	45.0%
!	CAAAAGGCTATTTGGAGCCA+GGG	+	chr5.1:44983325-44983344	MS.gene053790:CDS	45.0%
!	CAAGCCTTTGAGTTCTTCCT+TGG	-	chr5.1:44983458-44983477	None:intergenic	45.0%
!	CTGGCTCCAAATAGCCTTTT+GGG	-	chr5.1:44983326-44983345	None:intergenic	45.0%
	AAGTGTCCCAAGGAGGGTTA+GGG	+	chr5.1:44983354-44983373	MS.gene053790:CDS	50.0%
	ACTCAAAGGCTTGGGCACAA+AGG	+	chr5.1:44983465-44983484	MS.gene053790:CDS	50.0%
	CCTCATCATCGTTCCTCTTG+CGG	-	chr5.1:44983390-44983409	None:intergenic	50.0%
	CTCATCATCGTTCCTCTTGC+GGG	-	chr5.1:44983389-44983408	None:intergenic	50.0%
	GACAACCTCTTCCTTCCTAC+TGG	-	chr5.1:44983209-44983228	None:intergenic	50.0%
!	CCAAAAGGCTATTTGGAGCC+AGG	+	chr5.1:44983324-44983343	MS.gene053790:CDS	50.0%
!	CCTGGCTCCAAATAGCCTTT+TGG	-	chr5.1:44983327-44983346	None:intergenic	50.0%
!!	GAGGTTGATGGTGTACTCTC+TGG	-	chr5.1:44983233-44983252	None:intergenic	50.0%
!!	GATCAGAAGTGTCCCAAGGA+GGG	+	chr5.1:44983348-44983367	MS.gene053790:CDS	50.0%
	AACCTCCACAAACGCCTCCA+TGG	+	chr5.1:44983247-44983266	MS.gene053790:CDS	55.0%
	ATGCGTACCCTAACCCTCCT+TGG	-	chr5.1:44983364-44983383	None:intergenic	55.0%
	CCGCAAGAGGAACGATGATG+AGG	+	chr5.1:44983387-44983406	MS.gene053790:CDS	55.0%
	TGCGTACCCTAACCCTCCTT+GGG	-	chr5.1:44983363-44983382	None:intergenic	55.0%
	TTGGGACACTTCTGATCCCC+TGG	-	chr5.1:44983345-44983364	None:intergenic	55.0%
!	GAAGTGTCCCAAGGAGGGTT+AGG	+	chr5.1:44983353-44983372	MS.gene053790:CDS	55.0%
!	GAGGCGTTTGTGGAGGTTGA+TGG	-	chr5.1:44983245-44983264	None:intergenic	55.0%
!!	AGGGGATCAGAAGTGTCCCA+AGG	+	chr5.1:44983344-44983363	MS.gene053790:CDS	55.0%
!!	GGATCAGAAGTGTCCCAAGG+AGG	+	chr5.1:44983347-44983366	MS.gene053790:CDS	55.0%
	CTCTTCCTTCCTACTGGCGC+CGG	-	chr5.1:44983203-44983222	None:intergenic	60.0%
!!	AGCCATGGAGGCGTTTGTGG+AGG	-	chr5.1:44983252-44983271	None:intergenic	60.0%
!!	TGCAGCCATGGAGGCGTTTG+TGG	-	chr5.1:44983255-44983274	None:intergenic	60.0%
	CGGCGCCAGTAGGAAGGAAG+AGG	+	chr5.1:44983201-44983220	MS.gene053790:CDS	65.0%
	GAAGACCGGCGCCAGTAGGA+AGG	+	chr5.1:44983195-44983214	MS.gene053790:CDS	65.0%
	GGGTACGCATTGCCCGCAAG+AGG	+	chr5.1:44983374-44983393	MS.gene053790:CDS	65.0%
	TGGAGAAGACCGGCGCCAGT+AGG	+	chr5.1:44983191-44983210	MS.gene053790:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	44983187	44983507	44983187	ID=MS.gene053790
chr5.1	mRNA	44983187	44983507	44983187	ID=MS.gene053790.t1;Parent=MS.gene053790
chr5.1	exon	44983187	44983507	44983187	ID=MS.gene053790.t1.exon1;Parent=MS.gene053790.t1
chr5.1	CDS	44983187	44983507	44983187	ID=cds.MS.gene053790.t1;Parent=MS.gene053790.t1

Gene Sequence	>MS.gene053790 ATGGTGGAGAAGACCGGCGCCAGTAGGAAGGAAGAGGTTGTCACCAGAGAGTACACCATCAACCTCCACAAACGCCTCCATGGCTGCACATTTAAGAAGAAAGCTCCTAAAGCAATAAAGGAGATCAGGAAGTTTGCCCAAAAGGCTATTTGGAGCCAGGGGATCAGAAGTGTCCCAAGGAGGGTTAGGGTACGCATTGCCCGCAAGAGGAACGATGATGAGGATGCTAAGGAAGAGCTCTACTCACTTGTTACCGTTGTTGAAATCCCCAAGGAAGAACTCAAAGGCTTGGGCACAAAGGTTATTGATGATGAGGATTGA
Protein sequence	>MS.gene053790.t1 MVEKTGASRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAIWSQGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLGTKVIDDED