Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20153.t1 | XP_003630662.2 | 99.2 | 121 | 1 | 0 | 1 | 121 | 1 | 121 | 1.90E-58 | 235 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20153.t1 | P46290 | 86.8 | 121 | 15 | 1 | 1 | 121 | 1 | 120 | 4.3e-51 | 201.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20153.t1 | B7FGL4 | 99.2 | 121 | 1 | 0 | 1 | 121 | 1 | 121 | 1.4e-58 | 235.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049361 | MS.gene20153 | 0.811209 | 7.85E-51 | -1.69E-46 |
MS.gene050134 | MS.gene20153 | 0.908999 | 9.24E-82 | -1.69E-46 |
MS.gene050252 | MS.gene20153 | 0.803921 | 2.77E-49 | -1.69E-46 |
MS.gene050791 | MS.gene20153 | 0.894788 | 1.77E-75 | -1.69E-46 |
MS.gene050912 | MS.gene20153 | 0.872996 | 2.07E-67 | -1.69E-46 |
MS.gene051904 | MS.gene20153 | 0.849257 | 3.63E-60 | -1.69E-46 |
MS.gene051984 | MS.gene20153 | 0.832503 | 9.11E-56 | -1.69E-46 |
MS.gene052664 | MS.gene20153 | 0.888262 | 6.90E-73 | -1.69E-46 |
MS.gene053224 | MS.gene20153 | 0.884058 | 2.65E-71 | -1.69E-46 |
MS.gene057092 | MS.gene20153 | 0.813551 | 2.42E-51 | -1.69E-46 |
MS.gene057272 | MS.gene20153 | 0.877829 | 4.59E-69 | -1.69E-46 |
MS.gene057641 | MS.gene20153 | 0.847301 | 1.26E-59 | -1.69E-46 |
MS.gene057643 | MS.gene20153 | 0.866457 | 2.81E-65 | -1.69E-46 |
MS.gene060483 | MS.gene20153 | 0.82482 | 6.56E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene049030 | MS.gene20153 | PPI |
MS.gene006800 | MS.gene20153 | PPI |
MS.gene20153 | MS.gene031484 | PPI |
MS.gene06169 | MS.gene20153 | PPI |
MS.gene20153 | MS.gene053790 | PPI |
MS.gene068781 | MS.gene20153 | PPI |
MS.gene073324 | MS.gene20153 | PPI |
MS.gene053790 | MS.gene20153 | PPI |
MS.gene012331 | MS.gene20153 | PPI |
MS.gene55890 | MS.gene20153 | PPI |
MS.gene96312 | MS.gene20153 | PPI |
MS.gene20153 | MS.gene66352 | PPI |
MS.gene065652 | MS.gene20153 | PPI |
MS.gene20153 | MS.gene064028 | PPI |
MS.gene20153 | MS.gene09046 | PPI |
MS.gene20153 | MS.gene57660 | PPI |
MS.gene09188 | MS.gene20153 | PPI |
MS.gene065189 | MS.gene20153 | PPI |
MS.gene92970 | MS.gene20153 | PPI |
MS.gene09187 | MS.gene20153 | PPI |
MS.gene012333 | MS.gene20153 | PPI |
MS.gene059846 | MS.gene20153 | PPI |
MS.gene20153 | MS.gene96780 | PPI |
MS.gene20153 | MS.gene030304 | PPI |
MS.gene20153 | MS.gene75054 | PPI |
MS.gene20153 | MS.gene031406 | PPI |
MS.gene023381 | MS.gene20153 | PPI |
MS.gene20153 | MS.gene56525 | PPI |
MS.gene08260 | MS.gene20153 | PPI |
MS.gene20153 | MS.gene99599 | PPI |
MS.gene20153 | MS.gene08259 | PPI |
MS.gene029547 | MS.gene20153 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20153.t1 | MTR_8g101980 | 99.174 | 121 | 1 | 0 | 1 | 121 | 1 | 121 | 2.44e-84 | 241 |
MS.gene20153.t1 | MTR_6g091630 | 96.694 | 121 | 4 | 0 | 1 | 121 | 1 | 121 | 3.27e-82 | 236 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20153.t1 | AT5G56710 | 82.456 | 114 | 20 | 0 | 8 | 121 | 6 | 119 | 3.61e-66 | 196 |
MS.gene20153.t1 | AT4G26230 | 81.579 | 114 | 21 | 0 | 8 | 121 | 6 | 119 | 1.18e-65 | 194 |
MS.gene20153.t1 | AT2G19740 | 81.034 | 116 | 22 | 0 | 6 | 121 | 4 | 119 | 2.00e-65 | 194 |
MS.gene20153.t1 | AT5G56710 | 58.772 | 114 | 13 | 1 | 8 | 121 | 6 | 85 | 6.95e-38 | 123 |
Find 51 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATCTCCTTTATTGCTTT+AGG | 0.186329 | 4.4:+3783285 | None:intergenic |
TCAAGTTGAACAAGGCTATT+TGG | 0.242228 | 4.4:-3783215 | MS.gene20153:CDS |
CATTAGTTCCCATAGCCTTT+TGG | 0.252576 | 4.4:+3783253 | None:intergenic |
CAATCCTTTGAGCTCTTCCT+TGG | 0.276372 | 4.4:+3783077 | None:intergenic |
CTCCTCATCGTTCCTCTTGC+GGG | 0.302912 | 4.4:+3783146 | None:intergenic |
GAAAGCTCCTAAAGCAATAA+AGG | 0.311659 | 4.4:-3783292 | MS.gene20153:CDS |
AATCCTTTGAGCTCTTCCTT+GGG | 0.346185 | 4.4:+3783078 | None:intergenic |
GAAGTGTCCCTAGGAGGGTT+AGG | 0.392774 | 4.4:-3783179 | MS.gene20153:CDS |
GAGGCGTTTGTGGAGGTTGA+TGG | 0.411978 | 4.4:+3783898 | None:intergenic |
GATCAGGAAGTTTGCCCAAA+AGG | 0.422618 | 4.4:-3783268 | MS.gene20153:CDS |
ATGCGAACCCTAACCCTCCT+AGG | 0.432434 | 4.4:+3783171 | None:intergenic |
CTAAAGCAATAAAGGAGATC+AGG | 0.445899 | 4.4:-3783284 | MS.gene20153:CDS |
AAGGAAGAGCTCAAAGGATT+GGG | 0.447041 | 4.4:-3783075 | MS.gene20153:CDS |
ACCAGCCATGGAGGCGTTTG+TGG | 0.449631 | 4.4:+3783888 | None:intergenic |
CAAGGAAGAGCTCAAAGGAT+TGG | 0.452186 | 4.4:-3783076 | MS.gene20153:CDS |
CCTCCTCATCGTTCCTCTTG+CGG | 0.459607 | 4.4:+3783145 | None:intergenic |
GAACAAGGCTATTTGGAGCC+AGG | 0.460263 | 4.4:-3783208 | MS.gene20153:CDS |
TCCACAAACGCCTCCATGGC+TGG | 0.473615 | 4.4:-3783889 | MS.gene20153:intron |
TAGGGACACTTCTGATCCCC+TGG | 0.478265 | 4.4:+3783190 | None:intergenic |
CTCTTCCTTCCTACCGGCGC+CGG | 0.482937 | 4.4:+3783940 | None:intergenic |
GAAGTTTGCCCAAAAGGCTA+TGG | 0.483900 | 4.4:-3783262 | MS.gene20153:CDS |
GTGAAAATGGTGGAGAAGAC+CGG | 0.499433 | 4.4:-3783959 | None:intergenic |
GAGGTTGATGGTGTACTCTC+TGG | 0.499941 | 4.4:+3783910 | None:intergenic |
AAGTGTCCCTAGGAGGGTTA+GGG | 0.512529 | 4.4:-3783178 | MS.gene20153:CDS |
ATCCTTTGAGCTCTTCCTTG+GGG | 0.520497 | 4.4:+3783079 | None:intergenic |
AACAAGGCTATTTGGAGCCA+GGG | 0.528204 | 4.4:-3783207 | MS.gene20153:CDS |
GAACGATGAGGAGGATGCTA+AGG | 0.531511 | 4.4:-3783136 | MS.gene20153:CDS |
AGAGAGAGAATTACCAGCCA+TGG | 0.536558 | 4.4:+3783876 | None:intergenic |
CACAAAGGTTATTGATGATG+AGG | 0.542190 | 4.4:-3783052 | MS.gene20153:CDS |
GAAGACCGGCGCCGGTAGGA+AGG | 0.546764 | 4.4:-3783945 | MS.gene20153:CDS |
CGGCGCCGGTAGGAAGGAAG+AGG | 0.547239 | 4.4:-3783939 | MS.gene20153:CDS |
AACCTCCACAAACGCCTCCA+TGG | 0.560698 | 4.4:-3783893 | MS.gene20153:CDS |
AGGGGATCAGAAGTGTCCCT+AGG | 0.578761 | 4.4:-3783188 | MS.gene20153:CDS |
GACAACCTCTTCCTTCCTAC+CGG | 0.582542 | 4.4:+3783934 | None:intergenic |
AAGTTTGCCCAAAAGGCTAT+GGG | 0.584767 | 4.4:-3783261 | MS.gene20153:CDS |
AGCCATGGAGGCGTTTGTGG+AGG | 0.589507 | 4.4:+3783891 | None:intergenic |
TACTGTTGTTGAAATCCCCA+AGG | 0.603575 | 4.4:-3783094 | MS.gene20153:CDS |
TGGAGAAGACCGGCGCCGGT+AGG | 0.608791 | 4.4:-3783949 | MS.gene20153:CDS |
GATCAGAAGTGTCCCTAGGA+GGG | 0.609828 | 4.4:-3783184 | MS.gene20153:CDS |
ATGGTGGAGAAGACCGGCGC+CGG | 0.610511 | 4.4:-3783953 | MS.gene20153:CDS |
TGCGAACCCTAACCCTCCTA+GGG | 0.611019 | 4.4:+3783172 | None:intergenic |
GGGTTCGCATTGCCCGCAAG+AGG | 0.617342 | 4.4:-3783158 | MS.gene20153:CDS |
GGATCAGAAGTGTCCCTAGG+AGG | 0.618801 | 4.4:-3783185 | MS.gene20153:CDS |
CCGCAAGAGGAACGATGAGG+AGG | 0.619270 | 4.4:-3783145 | MS.gene20153:CDS |
ATCCCCAAGGAAGAGCTCAA+AGG | 0.635127 | 4.4:-3783081 | MS.gene20153:CDS |
GAGAGAATTACCAGCCATGG+AGG | 0.648989 | 4.4:+3783879 | None:intergenic |
ACAAGGCTATTTGGAGCCAG+GGG | 0.649532 | 4.4:-3783206 | MS.gene20153:CDS |
GCTCAAAGGATTGGGCACAA+AGG | 0.653987 | 4.4:-3783067 | MS.gene20153:CDS |
AGTGGACGTCAAGTTGAACA+AGG | 0.683327 | 4.4:-3783223 | MS.gene20153:CDS |
GGGAACTAATGATGTCAGAG+TGG | 0.705766 | 4.4:-3783241 | MS.gene20153:CDS |
TGCCCGCAAGAGGAACGATG+AGG | 0.726992 | 4.4:-3783148 | MS.gene20153:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTTAATCTCTTTAGA+AGG | - | chr4.4:3783254-3783273 | MS.gene20153:CDS | 15.0% |
!!! | TTTACAATTATTTTGATAAC+CGG | - | chr4.4:3783499-3783518 | MS.gene20153:intron | 15.0% |
!! | ATCAGTTAAAATAACATCTA+CGG | + | chr4.4:3783480-3783499 | None:intergenic | 20.0% |
!!! | TTACAATTATTTTGATAACC+GGG | - | chr4.4:3783500-3783519 | MS.gene20153:intron | 20.0% |
! | TAAATAGCATATCACAGAAA+TGG | - | chr4.4:3783423-3783442 | MS.gene20153:intron | 25.0% |
!! | AAACAAAACATTTGCTAGAT+AGG | + | chr4.4:3783184-3783203 | None:intergenic | 25.0% |
!! | AACAAAACATTTGCTAGATA+GGG | + | chr4.4:3783183-3783202 | None:intergenic | 25.0% |
!! | GATATAGAGGAAAATTTTTG+TGG | - | chr4.4:3783215-3783234 | MS.gene20153:CDS | 25.0% |
!!! | TCTTTAGAAGGTTTTTTCAA+TGG | - | chr4.4:3783266-3783285 | MS.gene20153:CDS | 25.0% |
! | AAAAGTCATTTCAGGTAAAG+GGG | + | chr4.4:3783574-3783593 | None:intergenic | 30.0% |
! | AGAAAAGTCATTTCAGGTAA+AGG | + | chr4.4:3783576-3783595 | None:intergenic | 30.0% |
! | CATCAAAATGAAAAGCACAA+GGG | + | chr4.4:3783304-3783323 | None:intergenic | 30.0% |
! | CTTTTCTATGGAGATTGTTT+CGG | - | chr4.4:3783589-3783608 | MS.gene20153:intron | 30.0% |
! | GAAAAGTCATTTCAGGTAAA+GGG | + | chr4.4:3783575-3783594 | None:intergenic | 30.0% |
! | TACCTGAAATGACTTTTCTA+TGG | - | chr4.4:3783577-3783596 | MS.gene20153:intron | 30.0% |
! | TCATCAAAATGAAAAGCACA+AGG | + | chr4.4:3783305-3783324 | None:intergenic | 30.0% |
! | TTGTTTTCGATCAGATATAG+AGG | - | chr4.4:3783202-3783221 | MS.gene20153:CDS | 30.0% |
!! | GCTGTTTTGCATAATAACAA+AGG | + | chr4.4:3783677-3783696 | None:intergenic | 30.0% |
ATAGCATATCACAGAAATGG+TGG | - | chr4.4:3783426-3783445 | MS.gene20153:intron | 35.0% | |
CTAAAGCAATAAAGGAGATC+AGG | - | chr4.4:3783716-3783735 | MS.gene20153:intron | 35.0% | |
CTCCATAGAAAAGTCATTTC+AGG | + | chr4.4:3783582-3783601 | None:intergenic | 35.0% | |
CTGATCTCCTTTATTGCTTT+AGG | + | chr4.4:3783718-3783737 | None:intergenic | 35.0% | |
GAAAGCTCCTAAAGCAATAA+AGG | - | chr4.4:3783708-3783727 | MS.gene20153:intron | 35.0% | |
! | ATTAGTTCCCATAGCCTTTT+GGG | + | chr4.4:3783749-3783768 | None:intergenic | 35.0% |
!! | CACAAAGGTTATTGATGATG+AGG | - | chr4.4:3783948-3783967 | MS.gene20153:CDS | 35.0% |
!! | TCAAGTTGAACAAGGCTATT+TGG | - | chr4.4:3783785-3783804 | MS.gene20153:intron | 35.0% |
!!! | CAATTATTTTGATAACCGGG+AGG | - | chr4.4:3783503-3783522 | MS.gene20153:intron | 35.0% |
AAGGAAGAGCTCAAAGGATT+GGG | - | chr4.4:3783925-3783944 | MS.gene20153:CDS | 40.0% | |
AAGTTTGCCCAAAAGGCTAT+GGG | - | chr4.4:3783739-3783758 | MS.gene20153:intron | 40.0% | |
AATCCTTTGAGCTCTTCCTT+GGG | + | chr4.4:3783925-3783944 | None:intergenic | 40.0% | |
CAAAACTATATTCCTCCTCC+CGG | + | chr4.4:3783521-3783540 | None:intergenic | 40.0% | |
TACTGTTGTTGAAATCCCCA+AGG | - | chr4.4:3783906-3783925 | MS.gene20153:CDS | 40.0% | |
! | CATTAGTTCCCATAGCCTTT+TGG | + | chr4.4:3783750-3783769 | None:intergenic | 40.0% |
!!! | TTATTTTGATAACCGGGAGG+AGG | - | chr4.4:3783506-3783525 | MS.gene20153:intron | 40.0% |
AGAGAGAGAATTACCAGCCA+TGG | + | chr4.4:3783127-3783146 | None:intergenic | 45.0% | |
ATCCTTTGAGCTCTTCCTTG+GGG | + | chr4.4:3783924-3783943 | None:intergenic | 45.0% | |
CAAGGAAGAGCTCAAAGGAT+TGG | - | chr4.4:3783924-3783943 | MS.gene20153:CDS | 45.0% | |
CAATCCTTTGAGCTCTTCCT+TGG | + | chr4.4:3783926-3783945 | None:intergenic | 45.0% | |
GAAGTTTGCCCAAAAGGCTA+TGG | - | chr4.4:3783738-3783757 | MS.gene20153:intron | 45.0% | |
GATCAGGAAGTTTGCCCAAA+AGG | - | chr4.4:3783732-3783751 | MS.gene20153:intron | 45.0% | |
GGGAACTAATGATGTCAGAG+TGG | - | chr4.4:3783759-3783778 | MS.gene20153:intron | 45.0% | |
! | AACAAGGCTATTTGGAGCCA+GGG | - | chr4.4:3783793-3783812 | MS.gene20153:intron | 45.0% |
!! | AGTGGACGTCAAGTTGAACA+AGG | - | chr4.4:3783777-3783796 | MS.gene20153:intron | 45.0% |
AAGTGTCCCTAGGAGGGTTA+GGG | - | chr4.4:3783822-3783841 | MS.gene20153:intron | 50.0% | |
ATCCCCAAGGAAGAGCTCAA+AGG | - | chr4.4:3783919-3783938 | MS.gene20153:CDS | 50.0% | |
GAACGATGAGGAGGATGCTA+AGG | - | chr4.4:3783864-3783883 | MS.gene20153:intron | 50.0% | |
GACAACCTCTTCCTTCCTAC+CGG | + | chr4.4:3783069-3783088 | None:intergenic | 50.0% | |
GAGAGAATTACCAGCCATGG+AGG | + | chr4.4:3783124-3783143 | None:intergenic | 50.0% | |
GCTCAAAGGATTGGGCACAA+AGG | - | chr4.4:3783933-3783952 | MS.gene20153:CDS | 50.0% | |
! | ACAAGGCTATTTGGAGCCAG+GGG | - | chr4.4:3783794-3783813 | MS.gene20153:intron | 50.0% |
! | GAACAAGGCTATTTGGAGCC+AGG | - | chr4.4:3783792-3783811 | MS.gene20153:intron | 50.0% |
!! | GAGGTTGATGGTGTACTCTC+TGG | + | chr4.4:3783093-3783112 | None:intergenic | 50.0% |
!! | GATCAGAAGTGTCCCTAGGA+GGG | - | chr4.4:3783816-3783835 | MS.gene20153:intron | 50.0% |
AACCTCCACAAACGCCTCCA+TGG | - | chr4.4:3783107-3783126 | MS.gene20153:CDS | 55.0% | |
ATGCGAACCCTAACCCTCCT+AGG | + | chr4.4:3783832-3783851 | None:intergenic | 55.0% | |
CCTCCTCATCGTTCCTCTTG+CGG | + | chr4.4:3783858-3783877 | None:intergenic | 55.0% | |
CTCCTCATCGTTCCTCTTGC+GGG | + | chr4.4:3783857-3783876 | None:intergenic | 55.0% | |
TAGGGACACTTCTGATCCCC+TGG | + | chr4.4:3783813-3783832 | None:intergenic | 55.0% | |
TGCGAACCCTAACCCTCCTA+GGG | + | chr4.4:3783831-3783850 | None:intergenic | 55.0% | |
! | GAAGTGTCCCTAGGAGGGTT+AGG | - | chr4.4:3783821-3783840 | MS.gene20153:intron | 55.0% |
! | GAGGCGTTTGTGGAGGTTGA+TGG | + | chr4.4:3783105-3783124 | None:intergenic | 55.0% |
!! | AGGGGATCAGAAGTGTCCCT+AGG | - | chr4.4:3783812-3783831 | MS.gene20153:intron | 55.0% |
!! | GGATCAGAAGTGTCCCTAGG+AGG | - | chr4.4:3783815-3783834 | MS.gene20153:intron | 55.0% |
CCGCAAGAGGAACGATGAGG+AGG | - | chr4.4:3783855-3783874 | MS.gene20153:intron | 60.0% | |
TCCACAAACGCCTCCATGGC+TGG | - | chr4.4:3783111-3783130 | MS.gene20153:CDS | 60.0% | |
TGCCCGCAAGAGGAACGATG+AGG | - | chr4.4:3783852-3783871 | MS.gene20153:intron | 60.0% | |
!! | ACCAGCCATGGAGGCGTTTG+TGG | + | chr4.4:3783115-3783134 | None:intergenic | 60.0% |
!! | AGCCATGGAGGCGTTTGTGG+AGG | + | chr4.4:3783112-3783131 | None:intergenic | 60.0% |
CTCTTCCTTCCTACCGGCGC+CGG | + | chr4.4:3783063-3783082 | None:intergenic | 65.0% | |
GGGTTCGCATTGCCCGCAAG+AGG | - | chr4.4:3783842-3783861 | MS.gene20153:intron | 65.0% | |
! | ATGGTGGAGAAGACCGGCGC+CGG | - | chr4.4:3783047-3783066 | MS.gene20153:CDS | 65.0% |
!! | CGGCGCCGGTAGGAAGGAAG+AGG | - | chr4.4:3783061-3783080 | MS.gene20153:CDS | 70.0% |
!! | GAAGACCGGCGCCGGTAGGA+AGG | - | chr4.4:3783055-3783074 | MS.gene20153:CDS | 70.0% |
!! | TGGAGAAGACCGGCGCCGGT+AGG | - | chr4.4:3783051-3783070 | MS.gene20153:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 3783047 | 3783975 | 3783047 | ID=MS.gene20153 |
chr4.4 | mRNA | 3783047 | 3783975 | 3783047 | ID=MS.gene20153.t1;Parent=MS.gene20153 |
chr4.4 | exon | 3783890 | 3783975 | 3783890 | ID=MS.gene20153.t1.exon1;Parent=MS.gene20153.t1 |
chr4.4 | CDS | 3783890 | 3783975 | 3783890 | ID=cds.MS.gene20153.t1;Parent=MS.gene20153.t1 |
chr4.4 | exon | 3783047 | 3783326 | 3783047 | ID=MS.gene20153.t1.exon2;Parent=MS.gene20153.t1 |
chr4.4 | CDS | 3783047 | 3783326 | 3783047 | ID=cds.MS.gene20153.t1;Parent=MS.gene20153.t1 |
Gene Sequence |
Protein sequence |