Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064028.t1 | XP_024642002.1 | 100 | 121 | 0 | 0 | 1 | 121 | 1 | 121 | 5.00E-59 | 236.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064028.t1 | Q9M573 | 86.8 | 121 | 16 | 0 | 1 | 121 | 1 | 121 | 1.0e-52 | 207.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064028.t1 | G7KIQ1 | 100.0 | 121 | 0 | 0 | 1 | 121 | 1 | 121 | 3.6e-59 | 236.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050916 | MS.gene064028 | 0.808683 | 2.75E-50 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064028.t1 | MTR_6g091630 | 100.000 | 121 | 0 | 0 | 1 | 121 | 1 | 121 | 7.55e-85 | 243 |
MS.gene064028.t1 | MTR_8g101980 | 97.521 | 121 | 3 | 0 | 1 | 121 | 1 | 121 | 8.29e-83 | 238 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064028.t1 | AT5G56710 | 84.211 | 114 | 18 | 0 | 8 | 121 | 6 | 119 | 3.45e-67 | 198 |
MS.gene064028.t1 | AT4G26230 | 83.333 | 114 | 19 | 0 | 8 | 121 | 6 | 119 | 1.30e-66 | 197 |
MS.gene064028.t1 | AT2G19740 | 81.667 | 120 | 21 | 1 | 2 | 121 | 1 | 119 | 4.59e-66 | 196 |
MS.gene064028.t1 | AT5G56710 | 58.772 | 114 | 13 | 1 | 8 | 121 | 6 | 85 | 6.30e-38 | 123 |
Find 36 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATCTCCTTGATAGCTTT+TGG | 0.199036 | 6.1:+79287088 | None:intergenic |
ATTCCTAAAGAAGAGTTAAA+AGG | 0.277484 | 6.1:-79286884 | MS.gene064028:CDS |
TAAAGAAGAGTTAAAAGGTT+TGG | 0.305277 | 6.1:-79286879 | MS.gene064028:CDS |
TCAAGCTGAACAAGGCTATC+TGG | 0.323250 | 6.1:-79287018 | MS.gene064028:CDS |
AAAGAAGAGTTAAAAGGTTT+GGG | 0.335880 | 6.1:-79286878 | MS.gene064028:CDS |
GAAGTGTACCAAGGAGGATC+AGG | 0.398880 | 6.1:-79286982 | MS.gene064028:CDS |
TTGGTACACTTCTGATTCCC+TGG | 0.413987 | 6.1:+79286993 | None:intergenic |
AAGATTGAAATTACCATCCA+TGG | 0.468912 | 6.1:+79289027 | None:intergenic |
GAAGGCACCAAAAGCTATCA+AGG | 0.472855 | 6.1:-79287095 | MS.gene064028:CDS |
GAACAAGGCTATCTGGAGCC+AGG | 0.480113 | 6.1:-79287011 | MS.gene064028:CDS |
ATGGTGGAGAAGGGTGCAGC+AGG | 0.507040 | 6.1:-79289104 | MS.gene064028:CDS |
ATGCGTACCCTGATCCTCCT+TGG | 0.524657 | 6.1:+79286974 | None:intergenic |
GAGACGCTTGTGGAGATTGA+TGG | 0.526766 | 6.1:+79289049 | None:intergenic |
AAGGGAGTATAACTCTTCCT+TGG | 0.536523 | 6.1:+79286922 | None:intergenic |
GAAGCTGAAAATGGTGGAGA+AGG | 0.536786 | 6.1:-79289114 | None:intergenic |
TCTAACATCGTTAGTGCCCA+TGG | 0.538776 | 6.1:+79287048 | None:intergenic |
ATCTTCATCATCAATGACCT+TGG | 0.551546 | 6.1:+79286853 | None:intergenic |
AAACAGCACCTTCAAGAAGA+AGG | 0.555549 | 6.1:-79287113 | MS.gene064028:intron |
AATCTCCACAAGCGTCTCCA+TGG | 0.563199 | 6.1:-79289044 | MS.gene064028:CDS |
TCCACAAGCGTCTCCATGGA+TGG | 0.567901 | 6.1:-79289040 | MS.gene064028:intron |
TGCAGCAGGTAGAAAAGAAG+AGG | 0.581022 | 6.1:-79289090 | MS.gene064028:CDS |
AAAAGAAGAGGTGGTTACAC+GGG | 0.584738 | 6.1:-79289078 | MS.gene064028:CDS |
GAAAAGAAGAGGTGGTTACA+CGG | 0.586191 | 6.1:-79289079 | MS.gene064028:CDS |
ACCATCCATGGAGACGCTTG+TGG | 0.589153 | 6.1:+79289039 | None:intergenic |
GAATTTCAACGACAGTGACA+AGG | 0.604839 | 6.1:+79286903 | None:intergenic |
AAGCTGAAAATGGTGGAGAA+GGG | 0.607163 | 6.1:-79289113 | None:intergenic |
GAATGACGACGAAGATGCCA+AGG | 0.608749 | 6.1:-79286939 | MS.gene064028:CDS |
AACAAGGCTATCTGGAGCCA+GGG | 0.614836 | 6.1:-79287010 | MS.gene064028:CDS |
AAGTGTACCAAGGAGGATCA+GGG | 0.622533 | 6.1:-79286981 | MS.gene064028:CDS |
AGTTGATGTCAAGCTGAACA+AGG | 0.626602 | 6.1:-79287026 | MS.gene064028:CDS |
GTTAAAAGGTTTGGGCACCA+AGG | 0.626806 | 6.1:-79286870 | MS.gene064028:CDS |
AGCAGGTAGAAAAGAAGAGG+TGG | 0.632837 | 6.1:-79289087 | MS.gene064028:CDS |
AATTTCAACGACAGTGACAA+GGG | 0.644182 | 6.1:+79286904 | None:intergenic |
GGGTACGCATTGCTCGCAAG+AGG | 0.652748 | 6.1:-79286961 | MS.gene064028:CDS |
AGGGAATCAGAAGTGTACCA+AGG | 0.682823 | 6.1:-79286991 | MS.gene064028:CDS |
GAATCAGAAGTGTACCAAGG+AGG | 0.739011 | 6.1:-79286988 | MS.gene064028:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTCATGATTTGAAAAAT+CGG | - | chr6.1:79288633-79288652 | MS.gene064028:intron | 15.0% |
!! | AGCACTTATAATATTATAAG+CGG | + | chr6.1:79288016-79288035 | None:intergenic | 20.0% |
!! | ATTAAACTGTTAATCAAAAC+AGG | + | chr6.1:79287990-79288009 | None:intergenic | 20.0% |
!! | TTAAACTGTTAATCAAAACA+GGG | + | chr6.1:79287989-79288008 | None:intergenic | 20.0% |
!! | TTATGACGAGATAAAAATAA+AGG | - | chr6.1:79287190-79287209 | MS.gene064028:intron | 20.0% |
!! | TTATGTAACACAACAATTAT+GGG | + | chr6.1:79287442-79287461 | None:intergenic | 20.0% |
!! | TTGATATTCATATTGTGAAT+TGG | + | chr6.1:79288663-79288682 | None:intergenic | 20.0% |
!!! | AAGCTATTTTTATAAGCTAA+GGG | - | chr6.1:79287235-79287254 | MS.gene064028:intron | 20.0% |
!!! | CTGTGTTTATTAGATAATTT+TGG | - | chr6.1:79287334-79287353 | MS.gene064028:intron | 20.0% |
!!! | TAAGCTATTTTTATAAGCTA+AGG | - | chr6.1:79287234-79287253 | MS.gene064028:intron | 20.0% |
! | AAAAATAAGCCAATCTAAAC+AGG | + | chr6.1:79287261-79287280 | None:intergenic | 25.0% |
! | AAAGAAGAGTTAAAAGGTTT+GGG | - | chr6.1:79289076-79289095 | MS.gene064028:CDS | 25.0% |
! | AAATATGTATGCTGTTCATT+TGG | - | chr6.1:79288468-79288487 | MS.gene064028:intron | 25.0% |
! | AATGAACAGCATACATATTT+AGG | + | chr6.1:79288468-79288487 | None:intergenic | 25.0% |
! | ACTAAGTTATTTATCCATAC+AGG | + | chr6.1:79287112-79287131 | None:intergenic | 25.0% |
! | ATGAACAGCATACATATTTA+GGG | + | chr6.1:79288467-79288486 | None:intergenic | 25.0% |
! | ATGAATTCAAAAACAGCTTA+TGG | + | chr6.1:79288358-79288377 | None:intergenic | 25.0% |
! | ATTCCTAAAGAAGAGTTAAA+AGG | - | chr6.1:79289070-79289089 | MS.gene064028:CDS | 25.0% |
! | CTAAGTTATTTATCCATACA+GGG | + | chr6.1:79287111-79287130 | None:intergenic | 25.0% |
! | CTTATGTAACACAACAATTA+TGG | + | chr6.1:79287443-79287462 | None:intergenic | 25.0% |
! | GTGAGTAAATTAATAGTTTG+TGG | - | chr6.1:79288490-79288509 | MS.gene064028:intron | 25.0% |
! | TAAAGAAGAGTTAAAAGGTT+TGG | - | chr6.1:79289075-79289094 | MS.gene064028:CDS | 25.0% |
! | TATGAAAATAAGCTGAATAC+AGG | + | chr6.1:79287847-79287866 | None:intergenic | 25.0% |
! | TATGTAACACAACAATTATG+GGG | + | chr6.1:79287441-79287460 | None:intergenic | 25.0% |
! | TGCTAATTTCTGTTTATGTT+TGG | - | chr6.1:79288799-79288818 | MS.gene064028:intron | 25.0% |
! | TTTCATGATCTAACTACATT+AGG | - | chr6.1:79287963-79287982 | MS.gene064028:intron | 25.0% |
!! | AGTGATGAAATTGATGATTA+TGG | + | chr6.1:79287932-79287951 | None:intergenic | 25.0% |
!! | ATACATATTTAGGGTTTGTT+TGG | + | chr6.1:79288458-79288477 | None:intergenic | 25.0% |
!! | CTCAAATAAGCTATTTCAAA+AGG | - | chr6.1:79288201-79288220 | MS.gene064028:intron | 25.0% |
!! | TCAATTTTGTAGATCTACTA+GGG | - | chr6.1:79287716-79287735 | MS.gene064028:intron | 25.0% |
!! | TTCAATTTTGTAGATCTACT+AGG | - | chr6.1:79287715-79287734 | MS.gene064028:intron | 25.0% |
!!! | AAACCTTTTAACTCTTCTTT+AGG | + | chr6.1:79289076-79289095 | None:intergenic | 25.0% |
!!! | GCTGTTTTAAAAAAACATCA+TGG | + | chr6.1:79287876-79287895 | None:intergenic | 25.0% |
!!! | TAATATGAATTGAGTTGAGT+TGG | - | chr6.1:79288516-79288535 | MS.gene064028:intron | 25.0% |
!!! | TCCTGTAATATTGTTTTAGT+TGG | - | chr6.1:79287689-79287708 | MS.gene064028:intron | 25.0% |
AAGATTGAAATTACCATCCA+TGG | + | chr6.1:79286930-79286949 | None:intergenic | 30.0% | |
ATGTAACACAACAATTATGG+GGG | + | chr6.1:79287440-79287459 | None:intergenic | 30.0% | |
ATTCTCTAATGGCATAACAT+TGG | + | chr6.1:79288181-79288200 | None:intergenic | 30.0% | |
GCCAACTAAAACAATATTAC+AGG | + | chr6.1:79287693-79287712 | None:intergenic | 30.0% | |
GCTATGTGTAATTGCATAAT+TGG | - | chr6.1:79288737-79288756 | MS.gene064028:intron | 30.0% | |
TAGGATCTGTTTGGATAAAT+AGG | - | chr6.1:79287482-79287501 | MS.gene064028:intron | 30.0% | |
TGTCATCAACTGTTTCAATA+AGG | + | chr6.1:79287815-79287834 | None:intergenic | 30.0% | |
! | AAAATTTGCTCAAAAAGCCA+TGG | - | chr6.1:79288889-79288908 | MS.gene064028:intron | 30.0% |
! | AAATTTGCTCAAAAAGCCAT+GGG | - | chr6.1:79288890-79288909 | MS.gene064028:intron | 30.0% |
! | GCTTATTTGAGATTCTCTAA+TGG | + | chr6.1:79288192-79288211 | None:intergenic | 30.0% |
! | TATTTAGGGTTTGTTTGGAT+AGG | + | chr6.1:79288453-79288472 | None:intergenic | 30.0% |
! | TCAGTTTTCTGTGTTTACAT+TGG | - | chr6.1:79287635-79287654 | MS.gene064028:intron | 30.0% |
!! | CGTTTCAAATTTGTTGATCT+AGG | - | chr6.1:79287463-79287482 | MS.gene064028:intron | 30.0% |
!!! | TGTTTTTTATAAGCGACTCT+TGG | - | chr6.1:79288081-79288100 | MS.gene064028:intron | 30.0% |
AATTTCAACGACAGTGACAA+GGG | + | chr6.1:79289053-79289072 | None:intergenic | 35.0% | |
ATCTTCATCATCAATGACCT+TGG | + | chr6.1:79289104-79289123 | None:intergenic | 35.0% | |
TGTCATTGTTCATAAGTTGC+TGG | + | chr6.1:79288399-79288418 | None:intergenic | 35.0% | |
! | TTGTTGATCTAGGATCTGTT+TGG | - | chr6.1:79287473-79287492 | MS.gene064028:intron | 35.0% |
AAAAGAAGAGGTGGTTACAC+GGG | - | chr6.1:79286876-79286895 | MS.gene064028:CDS | 40.0% | |
AAACAGCACCTTCAAGAAGA+AGG | - | chr6.1:79288841-79288860 | MS.gene064028:intron | 40.0% | |
AACACAACAATTATGGGGGA+AGG | + | chr6.1:79287436-79287455 | None:intergenic | 40.0% | |
CTATAGATCTAGACCCTGTA+TGG | - | chr6.1:79287095-79287114 | MS.gene064028:CDS | 40.0% | |
CTATTTGCATAAGCTCCTGT+TGG | - | chr6.1:79287776-79287795 | MS.gene064028:intron | 40.0% | |
GAAAAGAAGAGGTGGTTACA+CGG | - | chr6.1:79286875-79286894 | MS.gene064028:CDS | 40.0% | |
GAATTTCAACGACAGTGACA+AGG | + | chr6.1:79289054-79289073 | None:intergenic | 40.0% | |
! | AAGGGAGTATAACTCTTCCT+TGG | + | chr6.1:79289035-79289054 | None:intergenic | 40.0% |
! | AGTTGATGTCAAGCTGAACA+AGG | - | chr6.1:79288928-79288947 | MS.gene064028:intron | 40.0% |
! | ATCTACTAGGGTGTTAGGAT+CGG | - | chr6.1:79287728-79287747 | MS.gene064028:intron | 40.0% |
! | TGTAGATCTACTAGGGTGTT+AGG | - | chr6.1:79287723-79287742 | MS.gene064028:intron | 40.0% |
! | TTCATAAGTTGCTGGCTGTT+TGG | + | chr6.1:79288391-79288410 | None:intergenic | 40.0% |
!! | CTGATCTCCTTGATAGCTTT+TGG | + | chr6.1:79288869-79288888 | None:intergenic | 40.0% |
!!! | TTTTGGTGCCTTCTTCTTGA+AGG | + | chr6.1:79288852-79288871 | None:intergenic | 40.0% |
AAGCTCCTGTTGGACTGTTT+GGG | - | chr6.1:79287786-79287805 | MS.gene064028:intron | 45.0% | |
AAGTGTACCAAGGAGGATCA+GGG | - | chr6.1:79288973-79288992 | MS.gene064028:intron | 45.0% | |
AGCAGGTAGAAAAGAAGAGG+TGG | - | chr6.1:79286867-79286886 | MS.gene064028:CDS | 45.0% | |
AGCTAAGGGCCTGTTTAGAT+TGG | - | chr6.1:79287249-79287268 | MS.gene064028:intron | 45.0% | |
GTTAAAAGGTTTGGGCACCA+AGG | - | chr6.1:79289084-79289103 | MS.gene064028:CDS | 45.0% | |
TAAGCTCCTGTTGGACTGTT+TGG | - | chr6.1:79287785-79287804 | MS.gene064028:intron | 45.0% | |
TCAAGCTGAACAAGGCTATC+TGG | - | chr6.1:79288936-79288955 | MS.gene064028:intron | 45.0% | |
TCTAACATCGTTAGTGCCCA+TGG | + | chr6.1:79288909-79288928 | None:intergenic | 45.0% | |
TGCAGCAGGTAGAAAAGAAG+AGG | - | chr6.1:79286864-79286883 | MS.gene064028:CDS | 45.0% | |
TTGGTACACTTCTGATTCCC+TGG | + | chr6.1:79288964-79288983 | None:intergenic | 45.0% | |
! | AGGGAATCAGAAGTGTACCA+AGG | - | chr6.1:79288963-79288982 | MS.gene064028:intron | 45.0% |
! | GAATCAGAAGTGTACCAAGG+AGG | - | chr6.1:79288966-79288985 | MS.gene064028:intron | 45.0% |
! | TCGCACTGTTTTGTGTGTTG+TGG | - | chr6.1:79288551-79288570 | MS.gene064028:intron | 45.0% |
!! | GAAGGCACCAAAAGCTATCA+AGG | - | chr6.1:79288859-79288878 | MS.gene064028:intron | 45.0% |
!! | TTAATTAAAATTAAAATCAT+GGG | + | chr6.1:79287065-79287084 | None:intergenic | 5.0% |
!! | TTTAATTAAAATTAAAATCA+TGG | + | chr6.1:79287066-79287085 | None:intergenic | 5.0% |
AATCTCCACAAGCGTCTCCA+TGG | - | chr6.1:79286910-79286929 | MS.gene064028:CDS | 50.0% | |
AGCGACTCTTGGAGAGCTTA+TGG | - | chr6.1:79288092-79288111 | MS.gene064028:intron | 50.0% | |
GAAGTGTACCAAGGAGGATC+AGG | - | chr6.1:79288972-79288991 | MS.gene064028:intron | 50.0% | |
GAATGACGACGAAGATGCCA+AGG | - | chr6.1:79289015-79289034 | MS.gene064028:intron | 50.0% | |
GAGACGCTTGTGGAGATTGA+TGG | + | chr6.1:79286908-79286927 | None:intergenic | 50.0% | |
! | AACAAGGCTATCTGGAGCCA+GGG | - | chr6.1:79288944-79288963 | MS.gene064028:intron | 50.0% |
! | CTAGGGTGTTAGGATCGGTT+TGG | - | chr6.1:79287733-79287752 | MS.gene064028:intron | 50.0% |
ACCATCCATGGAGACGCTTG+TGG | + | chr6.1:79286918-79286937 | None:intergenic | 55.0% | |
ATGCGTACCCTGATCCTCCT+TGG | + | chr6.1:79288983-79289002 | None:intergenic | 55.0% | |
GGTCTCCCAAACAGTCCAAC+AGG | + | chr6.1:79287794-79287813 | None:intergenic | 55.0% | |
TCCACAAGCGTCTCCATGGA+TGG | - | chr6.1:79286914-79286933 | MS.gene064028:CDS | 55.0% | |
! | GAACAAGGCTATCTGGAGCC+AGG | - | chr6.1:79288943-79288962 | MS.gene064028:intron | 55.0% |
GGGTACGCATTGCTCGCAAG+AGG | - | chr6.1:79288993-79289012 | MS.gene064028:intron | 60.0% | |
! | ATGGTGGAGAAGGGTGCAGC+AGG | - | chr6.1:79286850-79286869 | MS.gene064028:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 79286850 | 79289126 | 79286850 | ID=MS.gene064028 |
chr6.1 | mRNA | 79286850 | 79289126 | 79286850 | ID=MS.gene064028.t1;Parent=MS.gene064028 |
chr6.1 | exon | 79289041 | 79289126 | 79289041 | ID=MS.gene064028.t1.exon1;Parent=MS.gene064028.t1 |
chr6.1 | CDS | 79289041 | 79289126 | 79289041 | ID=cds.MS.gene064028.t1;Parent=MS.gene064028.t1 |
chr6.1 | exon | 79286850 | 79287129 | 79286850 | ID=MS.gene064028.t1.exon2;Parent=MS.gene064028.t1 |
chr6.1 | CDS | 79286850 | 79287129 | 79286850 | ID=cds.MS.gene064028.t1;Parent=MS.gene064028.t1 |
Gene Sequence |
Protein sequence |