Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06169.t1 | XP_003630662.2 | 100 | 121 | 0 | 0 | 1 | 121 | 1 | 121 | 5.00E-59 | 236.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06169.t1 | P46290 | 87.6 | 121 | 14 | 1 | 1 | 121 | 1 | 120 | 8.6e-52 | 204.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06169.t1 | B7FGL4 | 100.0 | 121 | 0 | 0 | 1 | 121 | 1 | 121 | 3.6e-59 | 236.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049306 | MS.gene06169 | 0.821432 | 4.05E-53 | -1.69E-46 |
MS.gene049361 | MS.gene06169 | 0.814838 | 1.26E-51 | -1.69E-46 |
MS.gene049387 | MS.gene06169 | 0.844006 | 9.87E-59 | -1.69E-46 |
MS.gene050134 | MS.gene06169 | 0.86838 | 6.81E-66 | -1.69E-46 |
MS.gene050252 | MS.gene06169 | 0.83033 | 3.12E-55 | -1.69E-46 |
MS.gene050791 | MS.gene06169 | 0.84935 | 3.42E-60 | -1.69E-46 |
MS.gene051925 | MS.gene06169 | 0.801489 | 8.79E-49 | -1.69E-46 |
MS.gene051984 | MS.gene06169 | 0.836351 | 9.84E-57 | -1.69E-46 |
MS.gene052664 | MS.gene06169 | 0.847475 | 1.13E-59 | -1.69E-46 |
MS.gene052666 | MS.gene06169 | 0.827099 | 1.89E-54 | -1.69E-46 |
MS.gene053224 | MS.gene06169 | 0.849283 | 3.57E-60 | -1.69E-46 |
MS.gene054624 | MS.gene06169 | 0.847204 | 1.34E-59 | -1.69E-46 |
MS.gene057272 | MS.gene06169 | 0.886228 | 4.10E-72 | -1.69E-46 |
MS.gene057321 | MS.gene06169 | 0.830291 | 3.19E-55 | -1.69E-46 |
MS.gene057641 | MS.gene06169 | 0.802599 | 5.20E-49 | -1.69E-46 |
MS.gene057643 | MS.gene06169 | 0.864333 | 1.31E-64 | -1.69E-46 |
MS.gene059340 | MS.gene06169 | 0.889561 | 2.17E-73 | -1.69E-46 |
MS.gene060483 | MS.gene06169 | 0.883177 | 5.60E-71 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene06169 | MS.gene012331 | PPI |
MS.gene06169 | MS.gene20153 | PPI |
MS.gene06169 | MS.gene92970 | PPI |
MS.gene06169 | MS.gene55890 | PPI |
MS.gene049030 | MS.gene06169 | PPI |
MS.gene006800 | MS.gene06169 | PPI |
MS.gene06169 | MS.gene96312 | PPI |
MS.gene068781 | MS.gene06169 | PPI |
MS.gene06169 | MS.gene57660 | PPI |
MS.gene06169 | MS.gene09187 | PPI |
MS.gene06169 | MS.gene065189 | PPI |
MS.gene06169 | MS.gene66352 | PPI |
MS.gene06169 | MS.gene012333 | PPI |
MS.gene06169 | MS.gene029547 | PPI |
MS.gene06169 | MS.gene96780 | PPI |
MS.gene06169 | MS.gene023381 | PPI |
MS.gene06169 | MS.gene064028 | PPI |
MS.gene06169 | MS.gene030304 | PPI |
MS.gene06169 | MS.gene75054 | PPI |
MS.gene06169 | MS.gene09046 | PPI |
MS.gene06169 | MS.gene031406 | PPI |
MS.gene06169 | MS.gene049030 | PPI |
MS.gene06169 | MS.gene56525 | PPI |
MS.gene059846 | MS.gene06169 | PPI |
MS.gene06169 | MS.gene99599 | PPI |
MS.gene06169 | MS.gene08259 | PPI |
MS.gene06169 | MS.gene031484 | PPI |
MS.gene06169 | MS.gene09188 | PPI |
MS.gene06169 | MS.gene073324 | PPI |
MS.gene06169 | MS.gene08260 | PPI |
MS.gene06169 | MS.gene053790 | PPI |
MS.gene06169 | MS.gene065652 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06169.t1 | MTR_8g101980 | 100.000 | 121 | 0 | 0 | 1 | 121 | 1 | 121 | 5.31e-85 | 243 |
MS.gene06169.t1 | MTR_6g091630 | 97.521 | 121 | 3 | 0 | 1 | 121 | 1 | 121 | 8.29e-83 | 238 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06169.t1 | AT5G56710 | 83.333 | 114 | 19 | 0 | 8 | 121 | 6 | 119 | 5.84e-67 | 197 |
MS.gene06169.t1 | AT4G26230 | 82.456 | 114 | 20 | 0 | 8 | 121 | 6 | 119 | 2.06e-66 | 196 |
MS.gene06169.t1 | AT2G19740 | 81.897 | 116 | 21 | 0 | 6 | 121 | 4 | 119 | 2.90e-66 | 196 |
MS.gene06169.t1 | AT5G56710 | 58.772 | 114 | 13 | 1 | 8 | 121 | 6 | 85 | 6.30e-38 | 123 |
Find 50 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATCTCCTTTATTGCTTT+AGG | 0.186329 | 4.2:+3257309 | None:intergenic |
TCAAGTTGAACAAGGCTATT+TGG | 0.242228 | 4.2:-3257239 | MS.gene06169:CDS |
CATTAGTTCCCATAGCCTTT+TGG | 0.252576 | 4.2:+3257277 | None:intergenic |
CAATCCTTTGAGCTCTTCCT+TGG | 0.276372 | 4.2:+3257101 | None:intergenic |
GAAAGCTCCTAAAGCAATAA+AGG | 0.311659 | 4.2:-3257316 | MS.gene06169:CDS |
CTCATCATCGTTCCTCTTGC+GGG | 0.315756 | 4.2:+3257170 | None:intergenic |
AATCCTTTGAGCTCTTCCTT+GGG | 0.346185 | 4.2:+3257102 | None:intergenic |
GAAGTGTCCCTAGGAGGGTT+AGG | 0.392774 | 4.2:-3257203 | MS.gene06169:CDS |
GAGGCGTTTGTGGAGGTTGA+TGG | 0.411978 | 4.2:+3257922 | None:intergenic |
GATCAGGAAGTTTGCCCAAA+AGG | 0.422618 | 4.2:-3257292 | MS.gene06169:CDS |
ATGCGAACCCTAACCCTCCT+AGG | 0.432434 | 4.2:+3257195 | None:intergenic |
CTAAAGCAATAAAGGAGATC+AGG | 0.445899 | 4.2:-3257308 | MS.gene06169:CDS |
AAGGAAGAGCTCAAAGGATT+GGG | 0.447041 | 4.2:-3257099 | MS.gene06169:CDS |
ACCAGCCATGGAGGCGTTTG+TGG | 0.449631 | 4.2:+3257912 | None:intergenic |
CAAGGAAGAGCTCAAAGGAT+TGG | 0.452186 | 4.2:-3257100 | MS.gene06169:CDS |
CCTCATCATCGTTCCTCTTG+CGG | 0.459607 | 4.2:+3257169 | None:intergenic |
GAACAAGGCTATTTGGAGCC+AGG | 0.460263 | 4.2:-3257232 | MS.gene06169:CDS |
TCCACAAACGCCTCCATGGC+TGG | 0.473615 | 4.2:-3257913 | MS.gene06169:intron |
TAGGGACACTTCTGATCCCC+TGG | 0.478265 | 4.2:+3257214 | None:intergenic |
CTCTTCCTTCCTACCGGCGC+CGG | 0.482937 | 4.2:+3257964 | None:intergenic |
GAAGTTTGCCCAAAAGGCTA+TGG | 0.483900 | 4.2:-3257286 | MS.gene06169:CDS |
GTGAAAATGGTGGAGAAGAC+CGG | 0.499433 | 4.2:-3257983 | None:intergenic |
GAGGTTGATGGTGTACTCTC+TGG | 0.499941 | 4.2:+3257934 | None:intergenic |
AAGTGTCCCTAGGAGGGTTA+GGG | 0.512529 | 4.2:-3257202 | MS.gene06169:CDS |
ATCCTTTGAGCTCTTCCTTG+GGG | 0.520497 | 4.2:+3257103 | None:intergenic |
AACAAGGCTATTTGGAGCCA+GGG | 0.528204 | 4.2:-3257231 | MS.gene06169:CDS |
AGAGAGAGAATTACCAGCCA+TGG | 0.536558 | 4.2:+3257900 | None:intergenic |
CACAAAGGTTATTGATGATG+AGG | 0.542190 | 4.2:-3257076 | MS.gene06169:CDS |
GAACGATGATGAGGATGCTA+AGG | 0.543980 | 4.2:-3257160 | MS.gene06169:CDS |
GAAGACCGGCGCCGGTAGGA+AGG | 0.546764 | 4.2:-3257969 | MS.gene06169:CDS |
CGGCGCCGGTAGGAAGGAAG+AGG | 0.547239 | 4.2:-3257963 | MS.gene06169:CDS |
AACCTCCACAAACGCCTCCA+TGG | 0.560698 | 4.2:-3257917 | MS.gene06169:CDS |
AGGGGATCAGAAGTGTCCCT+AGG | 0.578761 | 4.2:-3257212 | MS.gene06169:CDS |
GACAACCTCTTCCTTCCTAC+CGG | 0.582542 | 4.2:+3257958 | None:intergenic |
AAGTTTGCCCAAAAGGCTAT+GGG | 0.584767 | 4.2:-3257285 | MS.gene06169:CDS |
AGCCATGGAGGCGTTTGTGG+AGG | 0.589507 | 4.2:+3257915 | None:intergenic |
TACTGTTGTTGAAATCCCCA+AGG | 0.603575 | 4.2:-3257118 | MS.gene06169:CDS |
CCGCAAGAGGAACGATGATG+AGG | 0.607958 | 4.2:-3257169 | MS.gene06169:CDS |
TGGAGAAGACCGGCGCCGGT+AGG | 0.608791 | 4.2:-3257973 | MS.gene06169:CDS |
GATCAGAAGTGTCCCTAGGA+GGG | 0.609828 | 4.2:-3257208 | MS.gene06169:CDS |
ATGGTGGAGAAGACCGGCGC+CGG | 0.610511 | 4.2:-3257977 | MS.gene06169:CDS |
TGCGAACCCTAACCCTCCTA+GGG | 0.611019 | 4.2:+3257196 | None:intergenic |
GGGTTCGCATTGCCCGCAAG+AGG | 0.617342 | 4.2:-3257182 | MS.gene06169:CDS |
GGATCAGAAGTGTCCCTAGG+AGG | 0.618801 | 4.2:-3257209 | MS.gene06169:CDS |
ATCCCCAAGGAAGAGCTCAA+AGG | 0.635127 | 4.2:-3257105 | MS.gene06169:CDS |
GAGAGAATTACCAGCCATGG+AGG | 0.648989 | 4.2:+3257903 | None:intergenic |
ACAAGGCTATTTGGAGCCAG+GGG | 0.649532 | 4.2:-3257230 | MS.gene06169:CDS |
GCTCAAAGGATTGGGCACAA+AGG | 0.653987 | 4.2:-3257091 | MS.gene06169:CDS |
AGTGGACGTCAAGTTGAACA+AGG | 0.683327 | 4.2:-3257247 | MS.gene06169:CDS |
GGGAACTAATGATGTCAGAG+TGG | 0.705766 | 4.2:-3257265 | MS.gene06169:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTTAATCTCTTTAGA+AGG | - | chr4.2:3257278-3257297 | MS.gene06169:CDS | 15.0% |
!!! | TTTACAAATATTTTGATAAC+CGG | - | chr4.2:3257523-3257542 | MS.gene06169:intron | 15.0% |
!! | ATCAGTTAAAATAACATCTA+CGG | + | chr4.2:3257504-3257523 | None:intergenic | 20.0% |
!!! | TTACAAATATTTTGATAACC+GGG | - | chr4.2:3257524-3257543 | MS.gene06169:intron | 20.0% |
! | TAAATAGCATATCACAGAAA+TGG | - | chr4.2:3257447-3257466 | MS.gene06169:intron | 25.0% |
!! | AAACAAAACATTTGCTAGAT+AGG | + | chr4.2:3257208-3257227 | None:intergenic | 25.0% |
!! | AACAAAACATTTGCTAGATA+GGG | + | chr4.2:3257207-3257226 | None:intergenic | 25.0% |
!! | GATATAGAGGAAAATTTTTG+TGG | - | chr4.2:3257239-3257258 | MS.gene06169:CDS | 25.0% |
!!! | TCTTTAGAAGGTTTTTTCAA+TGG | - | chr4.2:3257290-3257309 | MS.gene06169:CDS | 25.0% |
! | AAAAGTCATTTCAGGTAAAG+GGG | + | chr4.2:3257598-3257617 | None:intergenic | 30.0% |
! | AGAAAAGTCATTTCAGGTAA+AGG | + | chr4.2:3257600-3257619 | None:intergenic | 30.0% |
! | CATCAAAATGAAAAGCACAA+GGG | + | chr4.2:3257328-3257347 | None:intergenic | 30.0% |
! | CTTTTCTATGGAGATTGTTT+CGG | - | chr4.2:3257613-3257632 | MS.gene06169:intron | 30.0% |
! | GAAAAGTCATTTCAGGTAAA+GGG | + | chr4.2:3257599-3257618 | None:intergenic | 30.0% |
! | TACCTGAAATGACTTTTCTA+TGG | - | chr4.2:3257601-3257620 | MS.gene06169:intron | 30.0% |
! | TCATCAAAATGAAAAGCACA+AGG | + | chr4.2:3257329-3257348 | None:intergenic | 30.0% |
! | TTGTTTTCGATCAGATATAG+AGG | - | chr4.2:3257226-3257245 | MS.gene06169:CDS | 30.0% |
!! | GCTGTTTTGCATAATAACAA+AGG | + | chr4.2:3257701-3257720 | None:intergenic | 30.0% |
ATAGCATATCACAGAAATGG+TGG | - | chr4.2:3257450-3257469 | MS.gene06169:intron | 35.0% | |
CTAAAGCAATAAAGGAGATC+AGG | - | chr4.2:3257740-3257759 | MS.gene06169:intron | 35.0% | |
CTCCATAGAAAAGTCATTTC+AGG | + | chr4.2:3257606-3257625 | None:intergenic | 35.0% | |
CTGATCTCCTTTATTGCTTT+AGG | + | chr4.2:3257742-3257761 | None:intergenic | 35.0% | |
GAAAGCTCCTAAAGCAATAA+AGG | - | chr4.2:3257732-3257751 | MS.gene06169:intron | 35.0% | |
! | ATTAGTTCCCATAGCCTTTT+GGG | + | chr4.2:3257773-3257792 | None:intergenic | 35.0% |
!! | CACAAAGGTTATTGATGATG+AGG | - | chr4.2:3257972-3257991 | MS.gene06169:CDS | 35.0% |
!! | TCAAGTTGAACAAGGCTATT+TGG | - | chr4.2:3257809-3257828 | MS.gene06169:intron | 35.0% |
!!! | CAAATATTTTGATAACCGGG+AGG | - | chr4.2:3257527-3257546 | MS.gene06169:intron | 35.0% |
AAGGAAGAGCTCAAAGGATT+GGG | - | chr4.2:3257949-3257968 | MS.gene06169:CDS | 40.0% | |
AAGTTTGCCCAAAAGGCTAT+GGG | - | chr4.2:3257763-3257782 | MS.gene06169:intron | 40.0% | |
AATCCTTTGAGCTCTTCCTT+GGG | + | chr4.2:3257949-3257968 | None:intergenic | 40.0% | |
CAAAACTATATTCCTCCTCC+CGG | + | chr4.2:3257545-3257564 | None:intergenic | 40.0% | |
TACTGTTGTTGAAATCCCCA+AGG | - | chr4.2:3257930-3257949 | MS.gene06169:CDS | 40.0% | |
! | CATTAGTTCCCATAGCCTTT+TGG | + | chr4.2:3257774-3257793 | None:intergenic | 40.0% |
!!! | ATATTTTGATAACCGGGAGG+AGG | - | chr4.2:3257530-3257549 | MS.gene06169:intron | 40.0% |
AGAGAGAGAATTACCAGCCA+TGG | + | chr4.2:3257151-3257170 | None:intergenic | 45.0% | |
ATCCTTTGAGCTCTTCCTTG+GGG | + | chr4.2:3257948-3257967 | None:intergenic | 45.0% | |
CAAGGAAGAGCTCAAAGGAT+TGG | - | chr4.2:3257948-3257967 | MS.gene06169:CDS | 45.0% | |
CAATCCTTTGAGCTCTTCCT+TGG | + | chr4.2:3257950-3257969 | None:intergenic | 45.0% | |
GAACGATGATGAGGATGCTA+AGG | - | chr4.2:3257888-3257907 | MS.gene06169:intron | 45.0% | |
GAAGTTTGCCCAAAAGGCTA+TGG | - | chr4.2:3257762-3257781 | MS.gene06169:intron | 45.0% | |
GATCAGGAAGTTTGCCCAAA+AGG | - | chr4.2:3257756-3257775 | MS.gene06169:intron | 45.0% | |
GGGAACTAATGATGTCAGAG+TGG | - | chr4.2:3257783-3257802 | MS.gene06169:intron | 45.0% | |
! | AACAAGGCTATTTGGAGCCA+GGG | - | chr4.2:3257817-3257836 | MS.gene06169:intron | 45.0% |
!! | AGTGGACGTCAAGTTGAACA+AGG | - | chr4.2:3257801-3257820 | MS.gene06169:intron | 45.0% |
AAGTGTCCCTAGGAGGGTTA+GGG | - | chr4.2:3257846-3257865 | MS.gene06169:intron | 50.0% | |
ATCCCCAAGGAAGAGCTCAA+AGG | - | chr4.2:3257943-3257962 | MS.gene06169:CDS | 50.0% | |
CCTCATCATCGTTCCTCTTG+CGG | + | chr4.2:3257882-3257901 | None:intergenic | 50.0% | |
CTCATCATCGTTCCTCTTGC+GGG | + | chr4.2:3257881-3257900 | None:intergenic | 50.0% | |
GACAACCTCTTCCTTCCTAC+CGG | + | chr4.2:3257093-3257112 | None:intergenic | 50.0% | |
GAGAGAATTACCAGCCATGG+AGG | + | chr4.2:3257148-3257167 | None:intergenic | 50.0% | |
GCTCAAAGGATTGGGCACAA+AGG | - | chr4.2:3257957-3257976 | MS.gene06169:CDS | 50.0% | |
! | ACAAGGCTATTTGGAGCCAG+GGG | - | chr4.2:3257818-3257837 | MS.gene06169:intron | 50.0% |
! | GAACAAGGCTATTTGGAGCC+AGG | - | chr4.2:3257816-3257835 | MS.gene06169:intron | 50.0% |
!! | GAGGTTGATGGTGTACTCTC+TGG | + | chr4.2:3257117-3257136 | None:intergenic | 50.0% |
!! | GATCAGAAGTGTCCCTAGGA+GGG | - | chr4.2:3257840-3257859 | MS.gene06169:intron | 50.0% |
AACCTCCACAAACGCCTCCA+TGG | - | chr4.2:3257131-3257150 | MS.gene06169:CDS | 55.0% | |
ATGCGAACCCTAACCCTCCT+AGG | + | chr4.2:3257856-3257875 | None:intergenic | 55.0% | |
CCGCAAGAGGAACGATGATG+AGG | - | chr4.2:3257879-3257898 | MS.gene06169:intron | 55.0% | |
TAGGGACACTTCTGATCCCC+TGG | + | chr4.2:3257837-3257856 | None:intergenic | 55.0% | |
TGCGAACCCTAACCCTCCTA+GGG | + | chr4.2:3257855-3257874 | None:intergenic | 55.0% | |
! | GAAGTGTCCCTAGGAGGGTT+AGG | - | chr4.2:3257845-3257864 | MS.gene06169:intron | 55.0% |
! | GAGGCGTTTGTGGAGGTTGA+TGG | + | chr4.2:3257129-3257148 | None:intergenic | 55.0% |
!! | AGGGGATCAGAAGTGTCCCT+AGG | - | chr4.2:3257836-3257855 | MS.gene06169:intron | 55.0% |
!! | GGATCAGAAGTGTCCCTAGG+AGG | - | chr4.2:3257839-3257858 | MS.gene06169:intron | 55.0% |
TCCACAAACGCCTCCATGGC+TGG | - | chr4.2:3257135-3257154 | MS.gene06169:CDS | 60.0% | |
!! | ACCAGCCATGGAGGCGTTTG+TGG | + | chr4.2:3257139-3257158 | None:intergenic | 60.0% |
!! | AGCCATGGAGGCGTTTGTGG+AGG | + | chr4.2:3257136-3257155 | None:intergenic | 60.0% |
CTCTTCCTTCCTACCGGCGC+CGG | + | chr4.2:3257087-3257106 | None:intergenic | 65.0% | |
GGGTTCGCATTGCCCGCAAG+AGG | - | chr4.2:3257866-3257885 | MS.gene06169:intron | 65.0% | |
! | ATGGTGGAGAAGACCGGCGC+CGG | - | chr4.2:3257071-3257090 | MS.gene06169:CDS | 65.0% |
!! | CGGCGCCGGTAGGAAGGAAG+AGG | - | chr4.2:3257085-3257104 | MS.gene06169:CDS | 70.0% |
!! | GAAGACCGGCGCCGGTAGGA+AGG | - | chr4.2:3257079-3257098 | MS.gene06169:CDS | 70.0% |
!! | TGGAGAAGACCGGCGCCGGT+AGG | - | chr4.2:3257075-3257094 | MS.gene06169:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 3257071 | 3257999 | 3257071 | ID=MS.gene06169 |
chr4.2 | mRNA | 3257071 | 3257999 | 3257071 | ID=MS.gene06169.t1;Parent=MS.gene06169 |
chr4.2 | exon | 3257914 | 3257999 | 3257914 | ID=MS.gene06169.t1.exon1;Parent=MS.gene06169.t1 |
chr4.2 | CDS | 3257914 | 3257999 | 3257914 | ID=cds.MS.gene06169.t1;Parent=MS.gene06169.t1 |
chr4.2 | exon | 3257071 | 3257350 | 3257071 | ID=MS.gene06169.t1.exon2;Parent=MS.gene06169.t1 |
chr4.2 | CDS | 3257071 | 3257350 | 3257071 | ID=cds.MS.gene06169.t1;Parent=MS.gene06169.t1 |
Gene Sequence |
Protein sequence |