Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56525.t1 | XP_003607729.1 | 92 | 563 | 35 | 1 | 1 | 553 | 1 | 563 | 5.40E-294 | 1019.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56525.t1 | Q9C923 | 75.8 | 504 | 111 | 2 | 4 | 496 | 3 | 506 | 3.4e-220 | 765.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56525.t1 | G7JF60 | 92.0 | 563 | 35 | 1 | 1 | 553 | 1 | 563 | 3.9e-294 | 1019.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56525.t1 | MTR_4g081850 | 92.540 | 563 | 32 | 1 | 1 | 553 | 1 | 563 | 0.0 | 1042 |
| MS.gene56525.t1 | MTR_2g079510 | 88.592 | 561 | 56 | 2 | 1 | 553 | 1 | 561 | 0.0 | 1018 |
| MS.gene56525.t1 | MTR_1g048030 | 38.676 | 287 | 153 | 3 | 189 | 452 | 125 | 411 | 2.94e-58 | 204 |
| MS.gene56525.t1 | MTR_4g050490 | 28.721 | 383 | 190 | 11 | 185 | 492 | 150 | 524 | 7.29e-34 | 136 |
| MS.gene56525.t1 | MTR_5g010400 | 65.278 | 72 | 25 | 0 | 7 | 78 | 14 | 85 | 2.99e-23 | 94.4 |
| MS.gene56525.t1 | MTR_7g094890 | 25.843 | 267 | 166 | 8 | 198 | 445 | 110 | 363 | 2.02e-15 | 78.6 |
| MS.gene56525.t1 | MTR_2g079540 | 70.000 | 50 | 13 | 1 | 7 | 54 | 15 | 64 | 1.24e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56525.t1 | AT1G52980 | 72.263 | 548 | 136 | 3 | 4 | 535 | 3 | 550 | 0.0 | 785 |
| MS.gene56525.t1 | AT3G07050 | 35.714 | 308 | 174 | 2 | 169 | 452 | 100 | 407 | 4.75e-61 | 212 |
| MS.gene56525.t1 | AT2G27200 | 30.031 | 323 | 169 | 6 | 185 | 452 | 149 | 469 | 1.39e-36 | 143 |
| MS.gene56525.t1 | AT1G08410 | 27.614 | 373 | 201 | 8 | 185 | 490 | 149 | 519 | 1.51e-35 | 141 |
| MS.gene56525.t1 | AT4G02790 | 26.115 | 314 | 198 | 9 | 155 | 447 | 64 | 364 | 1.47e-17 | 85.1 |
Find 128 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATTTGCAATACCTTTAA+TGG | 0.138476 | 4.4:+30445256 | None:intergenic |
| CTTTCAAATGCTTCTCTAAA+TGG | 0.150218 | 4.4:+30446524 | None:intergenic |
| GGTCAGGTTCACCGCCTTTA+AGG | 0.208215 | 4.4:+30445438 | None:intergenic |
| GCAAGCATTAATAAGTCTTT+TGG | 0.224309 | 4.4:-30446382 | MS.gene56525:CDS |
| CTTACAGGTTGCTCCAATTC+CGG | 0.231915 | 4.4:-30445729 | MS.gene56525:intron |
| CAGGCATCTGCTGCCATTAA+AGG | 0.234669 | 4.4:-30445269 | MS.gene56525:CDS |
| TCATCTGGCAAACTCCTTAA+AGG | 0.256903 | 4.4:-30445452 | MS.gene56525:CDS |
| ATATAATGAGAATGAGTTAA+AGG | 0.292360 | 4.4:-30445189 | MS.gene56525:CDS |
| GGCTGAGCGTGACTGGATTT+TGG | 0.293828 | 4.4:+30447116 | None:intergenic |
| AAGAAAACGTCCAAGTCTTT+TGG | 0.296672 | 4.4:-30446767 | MS.gene56525:CDS |
| AACCCGATCGCCAATGGTTC+GGG | 0.298498 | 4.4:-30446984 | MS.gene56525:CDS |
| TATGAGGAGCCTAATGTTAA+TGG | 0.328014 | 4.4:-30445323 | MS.gene56525:CDS |
| ATTAGAGTGCTTTGGTTTAC+CGG | 0.328797 | 4.4:+30447161 | None:intergenic |
| ACCGTAAGGGCCGTGTCTTA+TGG | 0.341749 | 4.4:-30447047 | MS.gene56525:CDS |
| CTTACGGTTGCGGACGGGTT+TGG | 0.345951 | 4.4:+30447062 | None:intergenic |
| ATGATTACCAGAAGCAATCT+AGG | 0.346051 | 4.4:-30446843 | MS.gene56525:CDS |
| CCGTAAGGGCCGTGTCTTAT+GGG | 0.347948 | 4.4:-30447046 | MS.gene56525:CDS |
| TTACAGGTTGCTCCAATTCC+GGG | 0.351375 | 4.4:-30445728 | MS.gene56525:intron |
| CAGTGGCGGCTGAGCGTGAC+TGG | 0.355736 | 4.4:+30447109 | None:intergenic |
| ACAGATGACTTCCCAACATT+TGG | 0.356765 | 4.4:+30446274 | None:intergenic |
| AAACCCGATCGCCAATGGTT+CGG | 0.366201 | 4.4:-30446985 | MS.gene56525:CDS |
| GAACAAGTGTGATCTAATTC+CGG | 0.392284 | 4.4:-30446467 | MS.gene56525:CDS |
| TATAATGAGAATGAGTTAAA+GGG | 0.392821 | 4.4:-30445188 | MS.gene56525:CDS |
| GGTGAACCCTAGATTGCTTC+TGG | 0.393253 | 4.4:+30446836 | None:intergenic |
| TGGGAGCAGTATCAACTATC+AGG | 0.394601 | 4.4:-30447027 | MS.gene56525:CDS |
| GGGCAACGAAAGGATGGCTT+AGG | 0.399832 | 4.4:-30446441 | MS.gene56525:CDS |
| TTCTTCAGATGTTGTTGTGC+AGG | 0.401568 | 4.4:-30446584 | MS.gene56525:CDS |
| AACATTAGGCTCCTCATACT+TGG | 0.402135 | 4.4:+30445328 | None:intergenic |
| GTTTCAGAACCTCGCCTATA+TGG | 0.402474 | 4.4:+30445558 | None:intergenic |
| TTCCCGAACCATTGGCGATC+GGG | 0.409646 | 4.4:+30446982 | None:intergenic |
| GAAACTCGTTATTCATTTGT+TGG | 0.421464 | 4.4:+30445049 | None:intergenic |
| CCCATAAGACACGGCCCTTA+CGG | 0.423389 | 4.4:+30447046 | None:intergenic |
| CTTCAGCTTTGCAAATCATC+TGG | 0.430614 | 4.4:-30445467 | MS.gene56525:CDS |
| AAACTCGTTATTCATTTGTT+GGG | 0.434048 | 4.4:+30445050 | None:intergenic |
| ACATCAATGCCATTAACATT+AGG | 0.437807 | 4.4:+30445314 | None:intergenic |
| AAAGATGCTGCTGACCATAT+AGG | 0.439860 | 4.4:-30445572 | MS.gene56525:CDS |
| TGGAAAGGGTTCACTTCTAT+CGG | 0.440433 | 4.4:-30446362 | MS.gene56525:CDS |
| TGGCAGCAGATGCCTGGTTA+TGG | 0.442559 | 4.4:+30445276 | None:intergenic |
| TTGGCGTCATTAGAGTGCTT+TGG | 0.444184 | 4.4:+30447153 | None:intergenic |
| AGGGTCAAAGCAAACGCATA+TGG | 0.452368 | 4.4:-30446630 | MS.gene56525:CDS |
| TTTGTTGGATATCCAAATGT+TGG | 0.456100 | 4.4:-30446286 | MS.gene56525:CDS |
| GTGTGATCTAATTCCGGCTT+GGG | 0.461353 | 4.4:-30446461 | MS.gene56525:CDS |
| GCGACATACCATGTTTGAAA+AGG | 0.465171 | 4.4:-30446650 | MS.gene56525:CDS |
| TTTGGAGTCATTGCTGCGGT+TGG | 0.465405 | 4.4:+30447134 | None:intergenic |
| TTATATAAATCACCTTGAAC+TGG | 0.466516 | 4.4:+30445206 | None:intergenic |
| TTGTTGGATATCCAAATGTT+GGG | 0.472784 | 4.4:-30446285 | MS.gene56525:CDS |
| CAACAAAGTGTACCAGTTCA+AGG | 0.472963 | 4.4:-30445218 | MS.gene56525:CDS |
| GGGTCAAAGCAAACGCATAT+GGG | 0.476137 | 4.4:-30446629 | MS.gene56525:CDS |
| CTTTAATGGCAGCAGATGCC+TGG | 0.487148 | 4.4:+30445270 | None:intergenic |
| TCATCTTTGCAGCAGTCATA+AGG | 0.488979 | 4.4:+30445417 | None:intergenic |
| GGAAGACCTGTCCAAGTATG+AGG | 0.491469 | 4.4:-30445339 | MS.gene56525:CDS |
| AAGACTTATTAATGCTTGCA+TGG | 0.501286 | 4.4:+30446386 | None:intergenic |
| TAATTATAATGTTATCATCA+AGG | 0.504072 | 4.4:-30446893 | MS.gene56525:CDS |
| GAAAGTAATGAAGCTGATGA+TGG | 0.504709 | 4.4:-30446688 | MS.gene56525:CDS |
| CGGCCCTTACGGTTGCGGAC+GGG | 0.508314 | 4.4:+30447057 | None:intergenic |
| TTGTTGTGGTAGACAACTCC+TGG | 0.509529 | 4.4:+30445647 | None:intergenic |
| GTTTGATTCTCGTGGATGGA+AGG | 0.510865 | 4.4:+30447004 | None:intergenic |
| TAATCAGAAGCCAAAAGACT+TGG | 0.511610 | 4.4:+30446757 | None:intergenic |
| GAGAGAAGCGTGAATGTCTC+CGG | 0.514912 | 4.4:-30447180 | MS.gene56525:CDS |
| CAAACCCGTCCGCAACCGTA+AGG | 0.516484 | 4.4:-30447061 | MS.gene56525:CDS |
| GGTTCTGAAACGTGTGAAGA+AGG | 0.518306 | 4.4:-30445546 | MS.gene56525:CDS |
| CGTGAGGATTCCCGAACCAT+TGG | 0.518846 | 4.4:+30446974 | None:intergenic |
| CGACATACCATGTTTGAAAA+GGG | 0.520906 | 4.4:-30446649 | MS.gene56525:CDS |
| AGACACGGCCCTTACGGTTG+CGG | 0.521696 | 4.4:+30447052 | None:intergenic |
| TCGGGTTTGATTCTCGTGGA+TGG | 0.524475 | 4.4:+30447000 | None:intergenic |
| TTTGCAGCAGTCATAAGGTC+AGG | 0.530012 | 4.4:+30445422 | None:intergenic |
| AATTATAATGTTATCATCAA+GGG | 0.531967 | 4.4:-30446892 | MS.gene56525:CDS |
| AGCCTATAAAATAAAAGAGT+GGG | 0.532348 | 4.4:-30445510 | MS.gene56525:CDS |
| GAATCAAACCCGATCGCCAA+TGG | 0.532452 | 4.4:-30446990 | MS.gene56525:CDS |
| CATCCTTTCGTTGCCCAAGC+CGG | 0.533687 | 4.4:+30446448 | None:intergenic |
| CGGCTTGGGCAACGAAAGGA+TGG | 0.538655 | 4.4:-30446447 | MS.gene56525:CDS |
| CAAAGATGATACTTCATGAC+TGG | 0.544123 | 4.4:-30445403 | MS.gene56525:CDS |
| GGCAACGAAAGGATGGCTTA+GGG | 0.546997 | 4.4:-30446440 | MS.gene56525:CDS |
| TGCTGACAAACTTCTGAACT+CGG | 0.547967 | 4.4:-30445159 | MS.gene56525:CDS |
| GAGCCTATAAAATAAAAGAG+TGG | 0.550840 | 4.4:-30445511 | MS.gene56525:CDS |
| ATTCCCGAACCATTGGCGAT+CGG | 0.551780 | 4.4:+30446981 | None:intergenic |
| ACGGCCCTTACGGTTGCGGA+CGG | 0.551921 | 4.4:+30447056 | None:intergenic |
| TGAAACAGATGTTGTGCTGA+AGG | 0.552137 | 4.4:-30445618 | MS.gene56525:CDS |
| TGATACTTCATGACTGGCAG+AGG | 0.552770 | 4.4:-30445397 | MS.gene56525:CDS |
| GAACAGCTTACTTCTGCAGC+TGG | 0.555564 | 4.4:-30445074 | MS.gene56525:CDS |
| TCAGATGGAACCTCGGTGGA+TGG | 0.556459 | 4.4:+30445095 | None:intergenic |
| TTGTGCAGGTTATAGATGCA+AGG | 0.560683 | 4.4:-30446570 | MS.gene56525:CDS |
| CATATGGGGTGAACTCTACA+AGG | 0.561859 | 4.4:-30446614 | MS.gene56525:CDS |
| ATGATTTGCAAAGCTGAAGT+AGG | 0.563324 | 4.4:+30445471 | None:intergenic |
| TGGTAACATCTTGTACCTTG+TGG | 0.564112 | 4.4:+30446544 | None:intergenic |
| AGTGTGATCTAATTCCGGCT+TGG | 0.566088 | 4.4:-30446462 | MS.gene56525:CDS |
| TAGGCTCCTCATACTTGGAC+AGG | 0.566773 | 4.4:+30445333 | None:intergenic |
| TTGGACAGGTCTTCCAGCCA+TGG | 0.567698 | 4.4:+30445347 | None:intergenic |
| AGATAGCGACACATTTGAGC+AGG | 0.568986 | 4.4:-30445120 | MS.gene56525:CDS |
| TCTTTCTGATTCACAACGTG+AGG | 0.569890 | 4.4:+30446958 | None:intergenic |
| TACAGGTTGCTCCAATTCCG+GGG | 0.570126 | 4.4:-30445727 | MS.gene56525:intron |
| GCGTACTAAGAATGTTTGCA+AGG | 0.578208 | 4.4:-30446239 | MS.gene56525:intron |
| GCAGAAGTAAGCTGTTCAGA+TGG | 0.582024 | 4.4:+30445080 | None:intergenic |
| CTTGCATGGAATGCTAGAGT+TGG | 0.588926 | 4.4:+30446400 | None:intergenic |
| TCTTTAGCTAAGAAAGCTGA+TGG | 0.590099 | 4.4:-30446730 | MS.gene56525:CDS |
| GCGATCGGGTTTGATTCTCG+TGG | 0.591809 | 4.4:+30446996 | None:intergenic |
| AGGTCTTCCAGCCATGGAGG+AGG | 0.591963 | 4.4:+30445353 | None:intergenic |
| TGGTATTGTACGTCTTGAGA+CGG | 0.597906 | 4.4:+30447082 | None:intergenic |
| TGATTACCAGAAGCAATCTA+GGG | 0.600894 | 4.4:-30446842 | MS.gene56525:CDS |
| CTTGAGACGGCGAACAGTGG+CGG | 0.602056 | 4.4:+30447095 | None:intergenic |
| AAACCCGTCCGCAACCGTAA+GGG | 0.603072 | 4.4:-30447060 | MS.gene56525:CDS |
| ATTCCGGCTTGGGCAACGAA+AGG | 0.603902 | 4.4:-30446451 | MS.gene56525:CDS |
| GATAAACAAGCAATATCTGT+CGG | 0.606616 | 4.4:-30446310 | MS.gene56525:CDS |
| GTAATCATTGAGAAGCGACA+TGG | 0.608065 | 4.4:+30446858 | None:intergenic |
| TGTGCAGGTTATAGATGCAA+GGG | 0.613175 | 4.4:-30446569 | MS.gene56525:CDS |
| GATACTTCATGACTGGCAGA+GGG | 0.617838 | 4.4:-30445396 | MS.gene56525:CDS |
| ATTATAATGTTATCATCAAG+GGG | 0.619969 | 4.4:-30446891 | MS.gene56525:CDS |
| AGTATATAACCCTTACAAAG+AGG | 0.626422 | 4.4:-30445688 | MS.gene56525:CDS |
| GAAACAGATGTTGTGCTGAA+GGG | 0.627267 | 4.4:-30445617 | MS.gene56525:CDS |
| AGATGTTGTGCTGAAGGGCG+TGG | 0.627685 | 4.4:-30445612 | MS.gene56525:CDS |
| CTGTTTCAGAGTCATTGTTG+TGG | 0.635053 | 4.4:+30445633 | None:intergenic |
| GGTCAAAGCAAACGCATATG+GGG | 0.635960 | 4.4:-30446628 | MS.gene56525:CDS |
| GACAGGTCTTCCAGCCATGG+AGG | 0.641023 | 4.4:+30445350 | None:intergenic |
| TGAGGCAGTTGACCATAACC+AGG | 0.646672 | 4.4:-30445288 | MS.gene56525:CDS |
| TGCTGCTGACCATATAGGCG+AGG | 0.647460 | 4.4:-30445567 | MS.gene56525:CDS |
| AAATTGCAAGCACAAACACA+TGG | 0.648597 | 4.4:-30446500 | MS.gene56525:CDS |
| CGTCTTGAGACGGCGAACAG+TGG | 0.652459 | 4.4:+30447092 | None:intergenic |
| ACAGGTTGCTCCAATTCCGG+GGG | 0.652730 | 4.4:-30445726 | MS.gene56525:intron |
| TAATGGCATTGATGTTGATG+AGG | 0.665181 | 4.4:-30445306 | MS.gene56525:CDS |
| TAATCATTGAGAAGCGACAT+GGG | 0.665391 | 4.4:+30446859 | None:intergenic |
| CTGTTCAGATGGAACCTCGG+TGG | 0.679880 | 4.4:+30445091 | None:intergenic |
| AAGCTGTTCAGATGGAACCT+CGG | 0.685311 | 4.4:+30445088 | None:intergenic |
| TGACAAACTTCTGAACTCGG+AGG | 0.694828 | 4.4:-30445156 | MS.gene56525:CDS |
| TCTGGCAAACTCCTTAAAGG+CGG | 0.702803 | 4.4:-30445449 | MS.gene56525:CDS |
| GATACTGCTCCCATAAGACA+CGG | 0.708733 | 4.4:+30447037 | None:intergenic |
| ATACTTCATGACTGGCAGAG+GGG | 0.723483 | 4.4:-30445395 | MS.gene56525:CDS |
| TGAGCAGGATCCATCCACCG+AGG | 0.767844 | 4.4:-30445105 | MS.gene56525:CDS |
| ATAGATGCAAGGGATCCACA+AGG | 0.773503 | 4.4:-30446559 | MS.gene56525:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTAATTATTCTTAC+AGG | - | chr4.4:30446512-30446531 | MS.gene56525:CDS | 10.0% |
| !! | TTAATAATATAATTGCTTTA+TGG | + | chr4.4:30446502-30446521 | None:intergenic | 10.0% |
| !! | AATTATAATGTTATCATCAA+GGG | - | chr4.4:30445364-30445383 | MS.gene56525:CDS | 15.0% |
| !! | TAATTATAATGTTATCATCA+AGG | - | chr4.4:30445363-30445382 | MS.gene56525:CDS | 15.0% |
| !! | AATATTTGCAATACCTTTAA+TGG | + | chr4.4:30447003-30447022 | None:intergenic | 20.0% |
| !! | ATATAATGAGAATGAGTTAA+AGG | - | chr4.4:30447067-30447086 | MS.gene56525:CDS | 20.0% |
| !! | ATTATAATGTTATCATCAAG+GGG | - | chr4.4:30445365-30445384 | MS.gene56525:CDS | 20.0% |
| !! | TATAATGAGAATGAGTTAAA+GGG | - | chr4.4:30447068-30447087 | MS.gene56525:CDS | 20.0% |
| !! | TTACATGTAATTATAGAAAG+AGG | - | chr4.4:30446182-30446201 | MS.gene56525:intron | 20.0% |
| !!! | AAACATTCGCTATAATTTTT+TGG | + | chr4.4:30446222-30446241 | None:intergenic | 20.0% |
| !!! | ATTAATAAGTCTTTTGGAAA+GGG | - | chr4.4:30445880-30445899 | MS.gene56525:intron | 20.0% |
| ! | AATCAAAATTCTCACTTAAG+CGG | - | chr4.4:30446267-30446286 | MS.gene56525:CDS | 25.0% |
| ! | AGCCTATAAAATAAAAGAGT+GGG | - | chr4.4:30446746-30446765 | MS.gene56525:CDS | 25.0% |
| ! | ATTATTCATGTGAATGTGAA+AGG | + | chr4.4:30446458-30446477 | None:intergenic | 25.0% |
| ! | TTATATAAATCACCTTGAAC+TGG | + | chr4.4:30447053-30447072 | None:intergenic | 25.0% |
| !!! | AACCCACTCTTTTATTTTAT+AGG | + | chr4.4:30446751-30446770 | None:intergenic | 25.0% |
| !!! | AGAGTTTTTTAGAGAAGAAA+TGG | - | chr4.4:30445324-30445343 | MS.gene56525:CDS | 25.0% |
| !!! | CATTAATAAGTCTTTTGGAA+AGG | - | chr4.4:30445879-30445898 | MS.gene56525:intron | 25.0% |
| AAAAAGGTTCTCTATCAAGA+AGG | + | chr4.4:30445444-30445463 | None:intergenic | 30.0% | |
| AAGACTTATTAATGCTTGCA+TGG | + | chr4.4:30445873-30445892 | None:intergenic | 30.0% | |
| AATTACTAACTAACGCACAA+AGG | + | chr4.4:30446154-30446173 | None:intergenic | 30.0% | |
| ACATCAATGCCATTAACATT+AGG | + | chr4.4:30446945-30446964 | None:intergenic | 30.0% | |
| AGTATATAACCCTTACAAAG+AGG | - | chr4.4:30446568-30446587 | MS.gene56525:CDS | 30.0% | |
| CAAAAAGATCCTCTTTGTAA+GGG | + | chr4.4:30446580-30446599 | None:intergenic | 30.0% | |
| CTATATATATCGCGAAAAAG+TGG | + | chr4.4:30446365-30446384 | None:intergenic | 30.0% | |
| CTTTCAAATGCTTCTCTAAA+TGG | + | chr4.4:30445735-30445754 | None:intergenic | 30.0% | |
| GAGCCTATAAAATAAAAGAG+TGG | - | chr4.4:30446745-30446764 | MS.gene56525:CDS | 30.0% | |
| GATAAACAAGCAATATCTGT+CGG | - | chr4.4:30445946-30445965 | MS.gene56525:intron | 30.0% | |
| TCAAAAAGATCCTCTTTGTA+AGG | + | chr4.4:30446581-30446600 | None:intergenic | 30.0% | |
| TGTTGCATATATTCATCAAG+AGG | + | chr4.4:30446415-30446434 | None:intergenic | 30.0% | |
| TTGTTGGATATCCAAATGTT+GGG | - | chr4.4:30445971-30445990 | MS.gene56525:intron | 30.0% | |
| TTTATGGTGACTCATATGTA+AGG | + | chr4.4:30446486-30446505 | None:intergenic | 30.0% | |
| TTTGTTGGATATCCAAATGT+TGG | - | chr4.4:30445970-30445989 | MS.gene56525:intron | 30.0% | |
| ! | GCAAGCATTAATAAGTCTTT+TGG | - | chr4.4:30445874-30445893 | MS.gene56525:intron | 30.0% |
| !! | ATCTTTTTGATTGATTGTCC+AGG | - | chr4.4:30446591-30446610 | MS.gene56525:CDS | 30.0% |
| !! | GCTTAAGTGAGAATTTTGAT+TGG | + | chr4.4:30446268-30446287 | None:intergenic | 30.0% |
| AAATTGCAAGCACAAACACA+TGG | - | chr4.4:30445756-30445775 | MS.gene56525:intron | 35.0% | |
| ATGATTACCAGAAGCAATCT+AGG | - | chr4.4:30445413-30445432 | MS.gene56525:CDS | 35.0% | |
| CAAAGATGATACTTCATGAC+TGG | - | chr4.4:30446853-30446872 | MS.gene56525:CDS | 35.0% | |
| CGACATACCATGTTTGAAAA+GGG | - | chr4.4:30445607-30445626 | MS.gene56525:CDS | 35.0% | |
| GAAAGTAATGAAGCTGATGA+TGG | - | chr4.4:30445568-30445587 | MS.gene56525:CDS | 35.0% | |
| GAACAAGTGTGATCTAATTC+CGG | - | chr4.4:30445789-30445808 | MS.gene56525:intron | 35.0% | |
| TAATCAGAAGCCAAAAGACT+TGG | + | chr4.4:30445502-30445521 | None:intergenic | 35.0% | |
| TAATCATTGAGAAGCGACAT+GGG | + | chr4.4:30445400-30445419 | None:intergenic | 35.0% | |
| TATGAGGAGCCTAATGTTAA+TGG | - | chr4.4:30446933-30446952 | MS.gene56525:CDS | 35.0% | |
| TCTTTAGCTAAGAAAGCTGA+TGG | - | chr4.4:30445526-30445545 | MS.gene56525:CDS | 35.0% | |
| TGATTACCAGAAGCAATCTA+GGG | - | chr4.4:30445414-30445433 | MS.gene56525:CDS | 35.0% | |
| ! | AAGAAAACGTCCAAGTCTTT+TGG | - | chr4.4:30445489-30445508 | MS.gene56525:CDS | 35.0% |
| ! | ATGATTTGCAAAGCTGAAGT+AGG | + | chr4.4:30446788-30446807 | None:intergenic | 35.0% |
| ! | ATTAGAGTGCTTTGGTTTAC+CGG | + | chr4.4:30445098-30445117 | None:intergenic | 35.0% |
| ! | TTTGATTGGTCAACTGGTAA+TGG | + | chr4.4:30446254-30446273 | None:intergenic | 35.0% |
| !! | GGACGTTTTCTTTTAGTCTT+AGG | + | chr4.4:30445481-30445500 | None:intergenic | 35.0% |
| !! | TAATGGCATTGATGTTGATG+AGG | - | chr4.4:30446950-30446969 | MS.gene56525:CDS | 35.0% |
| !!! | GAGAATTTTGATTGGTCAAC+TGG | + | chr4.4:30446260-30446279 | None:intergenic | 35.0% |
| AAAGATGCTGCTGACCATAT+AGG | - | chr4.4:30446684-30446703 | MS.gene56525:CDS | 40.0% | |
| AACATTAGGCTCCTCATACT+TGG | + | chr4.4:30446931-30446950 | None:intergenic | 40.0% | |
| ACAGATGACTTCCCAACATT+TGG | + | chr4.4:30445985-30446004 | None:intergenic | 40.0% | |
| CAACAAAGTGTACCAGTTCA+AGG | - | chr4.4:30447038-30447057 | MS.gene56525:CDS | 40.0% | |
| CATGGAGGAGGAACAAAAAA+GGG | + | chr4.4:30446894-30446913 | None:intergenic | 40.0% | |
| CTGTTTCAGAGTCATTGTTG+TGG | + | chr4.4:30446626-30446645 | None:intergenic | 40.0% | |
| CTTCAGCTTTGCAAATCATC+TGG | - | chr4.4:30446789-30446808 | MS.gene56525:CDS | 40.0% | |
| GAAACAGATGTTGTGCTGAA+GGG | - | chr4.4:30446639-30446658 | MS.gene56525:CDS | 40.0% | |
| GCGACATACCATGTTTGAAA+AGG | - | chr4.4:30445606-30445625 | MS.gene56525:CDS | 40.0% | |
| GCGTACTAAGAATGTTTGCA+AGG | - | chr4.4:30446017-30446036 | MS.gene56525:intron | 40.0% | |
| GGAGTACATGGAAGTTGTTA+GGG | - | chr4.4:30446307-30446326 | MS.gene56525:CDS | 40.0% | |
| GGTGCACGTGAATTTCTATA+AGG | + | chr4.4:30446394-30446413 | None:intergenic | 40.0% | |
| GTAATCATTGAGAAGCGACA+TGG | + | chr4.4:30445401-30445420 | None:intergenic | 40.0% | |
| TCATCTGGCAAACTCCTTAA+AGG | - | chr4.4:30446804-30446823 | MS.gene56525:CDS | 40.0% | |
| TCATCTTTGCAGCAGTCATA+AGG | + | chr4.4:30446842-30446861 | None:intergenic | 40.0% | |
| TCTCACTTAAGCGGAATTCA+TGG | - | chr4.4:30446276-30446295 | MS.gene56525:CDS | 40.0% | |
| TCTTTCTGATTCACAACGTG+AGG | + | chr4.4:30445301-30445320 | None:intergenic | 40.0% | |
| TGAAACAGATGTTGTGCTGA+AGG | - | chr4.4:30446638-30446657 | MS.gene56525:CDS | 40.0% | |
| TGCTGACAAACTTCTGAACT+CGG | - | chr4.4:30447097-30447116 | MS.gene56525:CDS | 40.0% | |
| TGGAAAGGGTTCACTTCTAT+CGG | - | chr4.4:30445894-30445913 | MS.gene56525:intron | 40.0% | |
| TGGTAACATCTTGTACCTTG+TGG | + | chr4.4:30445715-30445734 | None:intergenic | 40.0% | |
| TGGTATTGTACGTCTTGAGA+CGG | + | chr4.4:30445177-30445196 | None:intergenic | 40.0% | |
| TGTGCAGGTTATAGATGCAA+GGG | - | chr4.4:30445687-30445706 | MS.gene56525:CDS | 40.0% | |
| TTCTTCAGATGTTGTTGTGC+AGG | - | chr4.4:30445672-30445691 | MS.gene56525:CDS | 40.0% | |
| TTGTGCAGGTTATAGATGCA+AGG | - | chr4.4:30445686-30445705 | MS.gene56525:CDS | 40.0% | |
| ! | AGGAGTACATGGAAGTTGTT+AGG | - | chr4.4:30446306-30446325 | MS.gene56525:CDS | 40.0% |
| ! | GCTTTGACCCTTTTCAAACA+TGG | + | chr4.4:30445617-30445636 | None:intergenic | 40.0% |
| !!! | CGGTTTTGAGACAATTTGCA+AGG | - | chr4.4:30445914-30445933 | MS.gene56525:intron | 40.0% |
| !!! | GAACCTTTTTTGCATGCGTT+TGG | - | chr4.4:30445454-30445473 | MS.gene56525:CDS | 40.0% |
| !!! | GCAATATCTGTCGGTTTTGT+TGG | - | chr4.4:30445955-30445974 | MS.gene56525:intron | 40.0% |
| AAGCTGTTCAGATGGAACCT+CGG | + | chr4.4:30447171-30447190 | None:intergenic | 45.0% | |
| AGATAGCGACACATTTGAGC+AGG | - | chr4.4:30447136-30447155 | MS.gene56525:CDS | 45.0% | |
| AGGGTCAAAGCAAACGCATA+TGG | - | chr4.4:30445626-30445645 | MS.gene56525:CDS | 45.0% | |
| AGTGTGATCTAATTCCGGCT+TGG | - | chr4.4:30445794-30445813 | MS.gene56525:intron | 45.0% | |
| ATACTTCATGACTGGCAGAG+GGG | - | chr4.4:30446861-30446880 | MS.gene56525:CDS | 45.0% | |
| ATAGATGCAAGGGATCCACA+AGG | - | chr4.4:30445697-30445716 | MS.gene56525:CDS | 45.0% | |
| CATATGGGGTGAACTCTACA+AGG | - | chr4.4:30445642-30445661 | MS.gene56525:CDS | 45.0% | |
| CCATGGAGGAGGAACAAAAA+AGG | + | chr4.4:30446895-30446914 | None:intergenic | 45.0% | |
| CTTACAGGTTGCTCCAATTC+CGG | - | chr4.4:30446527-30446546 | MS.gene56525:CDS | 45.0% | |
| CTTGCATGGAATGCTAGAGT+TGG | + | chr4.4:30445859-30445878 | None:intergenic | 45.0% | |
| GATACTGCTCCCATAAGACA+CGG | + | chr4.4:30445222-30445241 | None:intergenic | 45.0% | |
| GATACTTCATGACTGGCAGA+GGG | - | chr4.4:30446860-30446879 | MS.gene56525:CDS | 45.0% | |
| GCAGAAGTAAGCTGTTCAGA+TGG | + | chr4.4:30447179-30447198 | None:intergenic | 45.0% | |
| GGGTCAAAGCAAACGCATAT+GGG | - | chr4.4:30445627-30445646 | MS.gene56525:CDS | 45.0% | |
| GGTCAAAGCAAACGCATATG+GGG | - | chr4.4:30445628-30445647 | MS.gene56525:CDS | 45.0% | |
| GGTCCAAACGCATGCAAAAA+AGG | + | chr4.4:30445460-30445479 | None:intergenic | 45.0% | |
| GTGTGATCTAATTCCGGCTT+GGG | - | chr4.4:30445795-30445814 | MS.gene56525:intron | 45.0% | |
| GTTTCAGAACCTCGCCTATA+TGG | + | chr4.4:30446701-30446720 | None:intergenic | 45.0% | |
| GTTTGATTCTCGTGGATGGA+AGG | + | chr4.4:30445255-30445274 | None:intergenic | 45.0% | |
| TAAGCGGAATTCATGGCGAT+GGG | - | chr4.4:30446283-30446302 | MS.gene56525:CDS | 45.0% | |
| TCTGGCAAACTCCTTAAAGG+CGG | - | chr4.4:30446807-30446826 | MS.gene56525:CDS | 45.0% | |
| TGACAAACTTCTGAACTCGG+AGG | - | chr4.4:30447100-30447119 | MS.gene56525:CDS | 45.0% | |
| TGATACTTCATGACTGGCAG+AGG | - | chr4.4:30446859-30446878 | MS.gene56525:CDS | 45.0% | |
| TGGGAGCAGTATCAACTATC+AGG | - | chr4.4:30445229-30445248 | MS.gene56525:CDS | 45.0% | |
| TTAAGCGGAATTCATGGCGA+TGG | - | chr4.4:30446282-30446301 | MS.gene56525:CDS | 45.0% | |
| TTACAGGTTGCTCCAATTCC+GGG | - | chr4.4:30446528-30446547 | MS.gene56525:CDS | 45.0% | |
| TTCCGGGGGAAACAAAAGTT+TGG | - | chr4.4:30446544-30446563 | MS.gene56525:CDS | 45.0% | |
| TTGTTGTGGTAGACAACTCC+TGG | + | chr4.4:30446612-30446631 | None:intergenic | 45.0% | |
| TTTGCAGCAGTCATAAGGTC+AGG | + | chr4.4:30446837-30446856 | None:intergenic | 45.0% | |
| ! | TTGGCGTCATTAGAGTGCTT+TGG | + | chr4.4:30445106-30445125 | None:intergenic | 45.0% |
| !! | ACTTTTGTTTCCCCCGGAAT+TGG | + | chr4.4:30446543-30446562 | None:intergenic | 45.0% |
| !! | GGTTCTGAAACGTGTGAAGA+AGG | - | chr4.4:30446710-30446729 | MS.gene56525:CDS | 45.0% |
| !! | TGCCAAACTTTTGTTTCCCC+CGG | + | chr4.4:30446549-30446568 | None:intergenic | 45.0% |
| !!! | CCTTTTTTGTTCCTCCTCCA+TGG | - | chr4.4:30446892-30446911 | MS.gene56525:CDS | 45.0% |
| !!! | GGATTTTGGAGTCATTGCTG+CGG | + | chr4.4:30445129-30445148 | None:intergenic | 45.0% |
| AAACCCGATCGCCAATGGTT+CGG | - | chr4.4:30445271-30445290 | MS.gene56525:CDS | 50.0% | |
| ATTCCCGAACCATTGGCGAT+CGG | + | chr4.4:30445278-30445297 | None:intergenic | 50.0% | |
| CAGGCATCTGCTGCCATTAA+AGG | - | chr4.4:30446987-30447006 | MS.gene56525:CDS | 50.0% | |
| CTTTAATGGCAGCAGATGCC+TGG | + | chr4.4:30446989-30447008 | None:intergenic | 50.0% | |
| GAACAGCTTACTTCTGCAGC+TGG | - | chr4.4:30447182-30447201 | MS.gene56525:CDS | 50.0% | |
| GAATCAAACCCGATCGCCAA+TGG | - | chr4.4:30445266-30445285 | MS.gene56525:CDS | 50.0% | |
| GGAAGACCTGTCCAAGTATG+AGG | - | chr4.4:30446917-30446936 | MS.gene56525:CDS | 50.0% | |
| GGCAACGAAAGGATGGCTTA+GGG | - | chr4.4:30445816-30445835 | MS.gene56525:intron | 50.0% | |
| GGTGAACCCTAGATTGCTTC+TGG | + | chr4.4:30445423-30445442 | None:intergenic | 50.0% | |
| TACAGGTTGCTCCAATTCCG+GGG | - | chr4.4:30446529-30446548 | MS.gene56525:CDS | 50.0% | |
| TAGGCTCCTCATACTTGGAC+AGG | + | chr4.4:30446926-30446945 | None:intergenic | 50.0% | |
| TCGGGTTTGATTCTCGTGGA+TGG | + | chr4.4:30445259-30445278 | None:intergenic | 50.0% | |
| TGAGGCAGTTGACCATAACC+AGG | - | chr4.4:30446968-30446987 | MS.gene56525:CDS | 50.0% | |
| ! | GAGAGAAGCGTGAATGTCTC+CGG | - | chr4.4:30445076-30445095 | MS.gene56525:CDS | 50.0% |
| ! | TGTTAGGGAAAGCACAGCAC+TGG | - | chr4.4:30446322-30446341 | MS.gene56525:CDS | 50.0% |
| ! | TTTGGAGTCATTGCTGCGGT+TGG | + | chr4.4:30445125-30445144 | None:intergenic | 50.0% |
| ! | TTTTGTTCCTCCTCCATGGC+TGG | - | chr4.4:30446896-30446915 | MS.gene56525:CDS | 50.0% |
| AAACCCGTCCGCAACCGTAA+GGG | - | chr4.4:30445196-30445215 | MS.gene56525:CDS | 55.0% | |
| AACCCGATCGCCAATGGTTC+GGG | - | chr4.4:30445272-30445291 | MS.gene56525:CDS | 55.0% | |
| ACAGGTTGCTCCAATTCCGG+GGG | - | chr4.4:30446530-30446549 | MS.gene56525:CDS | 55.0% | |
| ACCGTAAGGGCCGTGTCTTA+TGG | - | chr4.4:30445209-30445228 | MS.gene56525:CDS | 55.0% | |
| AGATGTTGTGCTGAAGGGCG+TGG | - | chr4.4:30446644-30446663 | MS.gene56525:CDS | 55.0% | |
| CATCCTTTCGTTGCCCAAGC+CGG | + | chr4.4:30445811-30445830 | None:intergenic | 55.0% | |
| CCCATAAGACACGGCCCTTA+CGG | + | chr4.4:30445213-30445232 | None:intergenic | 55.0% | |
| CCGTAAGGGCCGTGTCTTAT+GGG | - | chr4.4:30445210-30445229 | MS.gene56525:CDS | 55.0% | |
| CGTGAGGATTCCCGAACCAT+TGG | + | chr4.4:30445285-30445304 | None:intergenic | 55.0% | |
| CTGTTCAGATGGAACCTCGG+TGG | + | chr4.4:30447168-30447187 | None:intergenic | 55.0% | |
| GCGATCGGGTTTGATTCTCG+TGG | + | chr4.4:30445263-30445282 | None:intergenic | 55.0% | |
| GGGCAACGAAAGGATGGCTT+AGG | - | chr4.4:30445815-30445834 | MS.gene56525:intron | 55.0% | |
| GGTCAGGTTCACCGCCTTTA+AGG | + | chr4.4:30446821-30446840 | None:intergenic | 55.0% | |
| TCAGATGGAACCTCGGTGGA+TGG | + | chr4.4:30447164-30447183 | None:intergenic | 55.0% | |
| TGCTGCTGACCATATAGGCG+AGG | - | chr4.4:30446689-30446708 | MS.gene56525:CDS | 55.0% | |
| TGGCAGCAGATGCCTGGTTA+TGG | + | chr4.4:30446983-30447002 | None:intergenic | 55.0% | |
| TTCCCGAACCATTGGCGATC+GGG | + | chr4.4:30445277-30445296 | None:intergenic | 55.0% | |
| TTGGACAGGTCTTCCAGCCA+TGG | + | chr4.4:30446912-30446931 | None:intergenic | 55.0% | |
| ! | ATGGCGATGGGAGGAGTACA+TGG | - | chr4.4:30446295-30446314 | MS.gene56525:CDS | 55.0% |
| ! | GGCTGAGCGTGACTGGATTT+TGG | + | chr4.4:30445143-30445162 | None:intergenic | 55.0% |
| !! | ATTCCGGCTTGGGCAACGAA+AGG | - | chr4.4:30445805-30445824 | MS.gene56525:intron | 55.0% |
| AGACACGGCCCTTACGGTTG+CGG | + | chr4.4:30445207-30445226 | None:intergenic | 60.0% | |
| AGGTCTTCCAGCCATGGAGG+AGG | + | chr4.4:30446906-30446925 | None:intergenic | 60.0% | |
| CAAACCCGTCCGCAACCGTA+AGG | - | chr4.4:30445195-30445214 | MS.gene56525:CDS | 60.0% | |
| CGTCTTGAGACGGCGAACAG+TGG | + | chr4.4:30445167-30445186 | None:intergenic | 60.0% | |
| CTTGAGACGGCGAACAGTGG+CGG | + | chr4.4:30445164-30445183 | None:intergenic | 60.0% | |
| GACAGGTCTTCCAGCCATGG+AGG | + | chr4.4:30446909-30446928 | None:intergenic | 60.0% | |
| GCGGAATTCATGGCGATGGG+AGG | - | chr4.4:30446286-30446305 | MS.gene56525:CDS | 60.0% | |
| TGAGCAGGATCCATCCACCG+AGG | - | chr4.4:30447151-30447170 | MS.gene56525:CDS | 60.0% | |
| ! | CGGCTTGGGCAACGAAAGGA+TGG | - | chr4.4:30445809-30445828 | MS.gene56525:intron | 60.0% |
| ! | CTTACGGTTGCGGACGGGTT+TGG | + | chr4.4:30445197-30445216 | None:intergenic | 60.0% |
| ACGGCCCTTACGGTTGCGGA+CGG | + | chr4.4:30445203-30445222 | None:intergenic | 65.0% | |
| CAGTGGCGGCTGAGCGTGAC+TGG | + | chr4.4:30445150-30445169 | None:intergenic | 70.0% | |
| CGGCCCTTACGGTTGCGGAC+GGG | + | chr4.4:30445202-30445221 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 30445061 | 30447217 | 30445061 | ID=MS.gene56525 |
| chr4.4 | mRNA | 30445061 | 30447217 | 30445061 | ID=MS.gene56525.t1;Parent=MS.gene56525 |
| chr4.4 | exon | 30446240 | 30447217 | 30446240 | ID=MS.gene56525.t1.exon1;Parent=MS.gene56525.t1 |
| chr4.4 | CDS | 30446240 | 30447217 | 30446240 | ID=cds.MS.gene56525.t1;Parent=MS.gene56525.t1 |
| chr4.4 | exon | 30445061 | 30445744 | 30445061 | ID=MS.gene56525.t1.exon2;Parent=MS.gene56525.t1 |
| chr4.4 | CDS | 30445061 | 30445744 | 30445061 | ID=cds.MS.gene56525.t1;Parent=MS.gene56525.t1 |
| Gene Sequence |
| Protein sequence |
