Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012331.t1 | GAU24300.1 | 86.2 | 210 | 27 | 1 | 1 | 210 | 35 | 242 | 3.80E-99 | 370.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012331.t1 | O74978 | 45.2 | 155 | 85 | 0 | 38 | 192 | 92 | 246 | 2.8e-34 | 146.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012331.t1 | A0A2Z6ML98 | 86.2 | 210 | 27 | 1 | 1 | 210 | 35 | 242 | 2.8e-99 | 370.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012331.t1 | MTR_4g127330 | 93.855 | 179 | 11 | 0 | 1 | 179 | 1 | 179 | 1.70e-124 | 349 |
| MS.gene012331.t1 | MTR_1g108290 | 88.205 | 195 | 21 | 1 | 16 | 210 | 20 | 212 | 3.15e-119 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012331.t1 | AT5G04600 | 62.304 | 191 | 71 | 1 | 20 | 209 | 28 | 218 | 6.51e-91 | 266 |
Find 39 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGGAAAATCAAGACATTT+TGG | 0.197189 | 8.4:-7343218 | MS.gene012331:CDS |
| ACTTCGAACTTTATCTTCTT+TGG | 0.221836 | 8.4:+7341598 | None:intergenic |
| GGCAATTCTCAATCTCTTAA+TGG | 0.261298 | 8.4:+7343253 | None:intergenic |
| CATGTCGTTCCCGTTCAATT+TGG | 0.309401 | 8.4:+7341945 | None:intergenic |
| CAGCCGTTGGATTGTGGTCC+TGG | 0.355366 | 8.4:-7343457 | MS.gene012331:CDS |
| GTGCATGGCTTTCTTTGCCT+TGG | 0.362218 | 8.4:+7343626 | None:intergenic |
| AACTTTATCTTCTTTGGAGC+AGG | 0.403899 | 8.4:+7341604 | None:intergenic |
| ATGCGAGCAATGTACAGAAC+AGG | 0.435394 | 8.4:+7343394 | None:intergenic |
| CAATTATCGTTACAAGCCTC+TGG | 0.449754 | 8.4:-7341975 | MS.gene012331:CDS |
| TAATTAGTAACTTACAAATT+GGG | 0.454040 | 8.4:+7343080 | None:intergenic |
| GGACTCTCTCCAAATTGAAC+GGG | 0.463008 | 8.4:-7341954 | MS.gene012331:CDS |
| TTATCTTCTTTGGAGCAGGC+TGG | 0.486343 | 8.4:+7341608 | None:intergenic |
| GCAGCAGCAGCAGGGTGAGA+TGG | 0.504318 | 8.4:+7343576 | None:intergenic |
| ATTTAAGTTCAGGAAGTTTG+CGG | 0.507275 | 8.4:+7343434 | None:intergenic |
| AAAACGTCGTAAAATGATAG+AGG | 0.508535 | 8.4:-7341765 | MS.gene012331:CDS |
| TACATTGCTCGCATTCCACA+CGG | 0.516540 | 8.4:-7343385 | MS.gene012331:CDS |
| TTGTCTCAGCCGTTGGATTG+TGG | 0.523207 | 8.4:-7343463 | MS.gene012331:intron |
| ACTTCCTGAACTTAAATCCC+TGG | 0.525683 | 8.4:-7343428 | MS.gene012331:CDS |
| GCCATTTCAGGAAAGAACAT+TGG | 0.534975 | 8.4:-7341831 | MS.gene012331:intron |
| AGTTCAGGAAGTTTGCGGCC+AGG | 0.544607 | 8.4:+7343439 | None:intergenic |
| TTAAGAGATTGAGAATTGCC+AGG | 0.546505 | 8.4:-7343250 | MS.gene012331:CDS |
| CCATGCACAAGAGTTTGAAA+AGG | 0.560682 | 8.4:-7343611 | MS.gene012331:CDS |
| TCTTCTTTGGAGCAGGCTGG+AGG | 0.568236 | 8.4:+7341611 | None:intergenic |
| TCCACACGGGTTCTACGAGA+TGG | 0.570256 | 8.4:-7343371 | MS.gene012331:CDS |
| CATAGAATTTGAATCTCCTG+AGG | 0.575091 | 8.4:-7343192 | MS.gene012331:CDS |
| GAGCATTGAGATGGGGACCA+AGG | 0.576294 | 8.4:-7343643 | None:intergenic |
| TGGACTCTCTCCAAATTGAA+CGG | 0.577893 | 8.4:-7341955 | MS.gene012331:CDS |
| GGGACATTCATAATCAATGC+CGG | 0.584899 | 8.4:+7341739 | None:intergenic |
| CGGGTTCTACGAGATGGAGA+TGG | 0.590555 | 8.4:-7343365 | MS.gene012331:CDS |
| CGTAAAATGATAGAGGCTGC+CGG | 0.596257 | 8.4:-7341758 | MS.gene012331:CDS |
| TTGGGATGAACATCTTCTGA+AGG | 0.613448 | 8.4:+7343098 | None:intergenic |
| TGCGAGCAATGTACAGAACA+GGG | 0.622218 | 8.4:+7343395 | None:intergenic |
| CGGCCAGGACCACAATCCAA+CGG | 0.630149 | 8.4:+7343454 | None:intergenic |
| TGAACGGGAACGACATGACA+AGG | 0.640978 | 8.4:-7341939 | MS.gene012331:intron |
| ACATTGCTCGCATTCCACAC+GGG | 0.659129 | 8.4:-7343384 | MS.gene012331:CDS |
| TTCTACGAGATGGAGATGGA+TGG | 0.665561 | 8.4:-7343361 | MS.gene012331:intron |
| TCCATCTCGTAGAACCCGTG+TGG | 0.670939 | 8.4:+7343370 | None:intergenic |
| TCAATTTGGAGAGAGTCCAG+AGG | 0.681598 | 8.4:+7341959 | None:intergenic |
| GCGAGCAATGTACAGAACAG+GGG | 0.718926 | 8.4:+7343396 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATTAAAAAAAAAAAAG+AGG | - | chr8.4:7342793-7342812 | MS.gene012331:intron | 10.0% |
| !! | ACTATTCATTTATATATAAG+AGG | - | chr8.4:7342821-7342840 | MS.gene012331:intron | 15.0% |
| !! | ATAATCATAAAGATGTTTAT+CGG | + | chr8.4:7342381-7342400 | None:intergenic | 15.0% |
| !! | ATATGTGTTTATCAATTTAT+TGG | - | chr8.4:7341921-7341940 | MS.gene012331:intron | 15.0% |
| !! | TAATTAGTAACTTACAAATT+GGG | + | chr8.4:7342150-7342169 | None:intergenic | 15.0% |
| !! | TTTAACTAGAATTATTTGAA+AGG | - | chr8.4:7342312-7342331 | MS.gene012331:intron | 15.0% |
| !!! | TTTTGTAATTGTATTTTGTA+CGG | + | chr8.4:7343053-7343072 | None:intergenic | 15.0% |
| !! | AAAATAAGAAATTCTATTGG+AGG | - | chr8.4:7342266-7342285 | MS.gene012331:intron | 20.0% |
| !! | AACAGCAATTAGATATAATA+TGG | + | chr8.4:7343584-7343603 | None:intergenic | 20.0% |
| !! | GAAACAAATCATTTAAACTT+AGG | + | chr8.4:7343166-7343185 | None:intergenic | 20.0% |
| !! | GAGAAAATAAGAAATTCTAT+TGG | - | chr8.4:7342263-7342282 | MS.gene012331:intron | 20.0% |
| !! | GATAAACATCTTTATGATTA+TGG | - | chr8.4:7342380-7342399 | MS.gene012331:intron | 20.0% |
| !! | GTAATTAGTAACTTACAAAT+TGG | + | chr8.4:7342151-7342170 | None:intergenic | 20.0% |
| !!! | AAAAGTCTCTCATTTATTTT+GGG | + | chr8.4:7342485-7342504 | None:intergenic | 20.0% |
| !!! | ATTGTATTTTGTACGATATA+TGG | + | chr8.4:7342948-7342967 | None:intergenic | 20.0% |
| !!! | TAAAAGTCTCTCATTTATTT+TGG | + | chr8.4:7342486-7342505 | None:intergenic | 20.0% |
| !!! | TACAGTTTAAGTTTTTTTGA+AGG | - | chr8.4:7341897-7341916 | MS.gene012331:intron | 20.0% |
| !!! | TATTCTTCTTGATGATATTT+AGG | + | chr8.4:7343192-7343211 | None:intergenic | 20.0% |
| !!! | TTACTAATTACTTCTTTTGT+AGG | - | chr8.4:7342160-7342179 | MS.gene012331:intron | 20.0% |
| !!! | TTTTACAGTTAATGTTATGT+TGG | + | chr8.4:7342977-7342996 | None:intergenic | 20.0% |
| !!! | TTTTGTATTTTGTGCTATTA+TGG | - | chr8.4:7343337-7343356 | MS.gene012331:intron | 20.0% |
| ! | CAAAAATGAATTTGAACTGA+TGG | - | chr8.4:7343124-7343143 | MS.gene012331:CDS | 25.0% |
| ! | CTAGAATTATTTGAAAGGAA+AGG | - | chr8.4:7342317-7342336 | MS.gene012331:intron | 25.0% |
| ! | TTTGTTAGAAATCAGAATGA+AGG | - | chr8.4:7342706-7342725 | MS.gene012331:intron | 25.0% |
| !! | TGCTGTTTGTATTGATATAT+TGG | - | chr8.4:7342766-7342785 | MS.gene012331:intron | 25.0% |
| AAAACGTCGTAAAATGATAG+AGG | - | chr8.4:7343462-7343481 | MS.gene012331:intron | 30.0% | |
| AATCAGTTGTTATGGAAAGA+AGG | - | chr8.4:7342912-7342931 | MS.gene012331:intron | 30.0% | |
| AATTTCCTTCCTTAACATTG+TGG | + | chr8.4:7342558-7342577 | None:intergenic | 30.0% | |
| ACTTCGAACTTTATCTTCTT+TGG | + | chr8.4:7343632-7343651 | None:intergenic | 30.0% | |
| AGATACCATACTCTAATAGT+TGG | - | chr8.4:7342514-7342533 | MS.gene012331:intron | 30.0% | |
| AGGAAATTCTAATAGTTGGT+AGG | - | chr8.4:7342570-7342589 | MS.gene012331:intron | 30.0% | |
| AGGAAGGAAATTCTAATAGT+TGG | - | chr8.4:7342566-7342585 | MS.gene012331:intron | 30.0% | |
| ATGGTTAAAAATTCGAGTCA+TGG | + | chr8.4:7343565-7343584 | None:intergenic | 30.0% | |
| ATGTTTATCGGATATCTAGA+GGG | + | chr8.4:7342369-7342388 | None:intergenic | 30.0% | |
| ATTTCCTTCCTTAACATTGT+GGG | + | chr8.4:7342557-7342576 | None:intergenic | 30.0% | |
| GTAACAGAACTATGTATTCA+AGG | - | chr8.4:7343009-7343028 | MS.gene012331:intron | 30.0% | |
| TATCATATCCCACAATGTTA+AGG | - | chr8.4:7342546-7342565 | MS.gene012331:intron | 30.0% | |
| TGGTGCTCTGTTTAAAAAAA+AGG | - | chr8.4:7343357-7343376 | MS.gene012331:intron | 30.0% | |
| TTAAAAATTCGAGTCATGGA+TGG | + | chr8.4:7343561-7343580 | None:intergenic | 30.0% | |
| TTGTACGGTATATCATTGTA+TGG | + | chr8.4:7343038-7343057 | None:intergenic | 30.0% | |
| ! | AACACAAAAAGTTGATTGAC+AGG | - | chr8.4:7343422-7343441 | MS.gene012331:CDS | 30.0% |
| ! | ACACAAAAAGTTGATTGACA+GGG | - | chr8.4:7343423-7343442 | MS.gene012331:CDS | 30.0% |
| ! | ACTGGAAAATCAAGACATTT+TGG | - | chr8.4:7342009-7342028 | MS.gene012331:intron | 30.0% |
| ! | ATCTAATTGCTGTTACAGAT+GGG | - | chr8.4:7343590-7343609 | MS.gene012331:CDS | 30.0% |
| ! | ATTTAAGTTCAGGAAGTTTG+CGG | + | chr8.4:7341796-7341815 | None:intergenic | 30.0% |
| ! | GTAAAGCTTTTCTTTGTAGA+TGG | - | chr8.4:7343221-7343240 | MS.gene012331:CDS | 30.0% |
| ! | GTATTTTGTACGATATATGG+TGG | + | chr8.4:7342945-7342964 | None:intergenic | 30.0% |
| ! | TATCTAATTGCTGTTACAGA+TGG | - | chr8.4:7343589-7343608 | MS.gene012331:CDS | 30.0% |
| ! | TTTTCCAGTCTTTTTATTCC+TGG | + | chr8.4:7341998-7342017 | None:intergenic | 30.0% |
| !! | TTGGTTTTTGCAGCTTATTT+TGG | - | chr8.4:7341940-7341959 | MS.gene012331:CDS | 30.0% |
| !!! | TCTCATTTATTTTGGGAGAA+GGG | + | chr8.4:7342478-7342497 | None:intergenic | 30.0% |
| AAGATGTAAGAGGACATATC+TGG | - | chr8.4:7342669-7342688 | MS.gene012331:intron | 35.0% | |
| ACCATACTCTAATAGTTGGT+AGG | - | chr8.4:7342518-7342537 | MS.gene012331:intron | 35.0% | |
| ATATCCCACAATGTTAAGGA+AGG | - | chr8.4:7342550-7342569 | MS.gene012331:intron | 35.0% | |
| ATTGCCAGGAATAAAAAGAC+TGG | - | chr8.4:7341991-7342010 | MS.gene012331:intron | 35.0% | |
| CATAGAATTTGAATCTCCTG+AGG | - | chr8.4:7342035-7342054 | MS.gene012331:intron | 35.0% | |
| CATATCTGGTCAATCAGTTT+AGG | - | chr8.4:7342683-7342702 | MS.gene012331:intron | 35.0% | |
| GATGATACTGTCAAAGTTGT+AGG | - | chr8.4:7342414-7342433 | MS.gene012331:intron | 35.0% | |
| GATGTTTATCGGATATCTAG+AGG | + | chr8.4:7342370-7342389 | None:intergenic | 35.0% | |
| GGCAATTCTCAATCTCTTAA+TGG | + | chr8.4:7341977-7341996 | None:intergenic | 35.0% | |
| TACGGTATATCATTGTATGG+CGG | + | chr8.4:7343035-7343054 | None:intergenic | 35.0% | |
| TCCAATGTTCTTTCCTGAAA+TGG | + | chr8.4:7343400-7343419 | None:intergenic | 35.0% | |
| TCCTACCAACTATTAGAGTA+TGG | + | chr8.4:7342522-7342541 | None:intergenic | 35.0% | |
| TTAAGAGATTGAGAATTGCC+AGG | - | chr8.4:7341977-7341996 | MS.gene012331:CDS | 35.0% | |
| TTTCAGACATGTGGTGTATT+TGG | + | chr8.4:7342611-7342630 | None:intergenic | 35.0% | |
| ! | ACAAGGTATTTAGTGTGATG+AGG | - | chr8.4:7343305-7343324 | MS.gene012331:intron | 35.0% |
| ! | TTCATTATTGCTGCCATTTC+AGG | - | chr8.4:7343384-7343403 | MS.gene012331:CDS | 35.0% |
| !! | AACTTTATCTTCTTTGGAGC+AGG | + | chr8.4:7343626-7343645 | None:intergenic | 35.0% |
| !! | TTTTCCAGGGATTTAAGTTC+AGG | + | chr8.4:7341806-7341825 | None:intergenic | 35.0% |
| !!! | CTCTCATTTATTTTGGGAGA+AGG | + | chr8.4:7342479-7342498 | None:intergenic | 35.0% |
| !!! | GCAGCTTATTTTGGACAATT+CGG | - | chr8.4:7341949-7341968 | MS.gene012331:CDS | 35.0% |
| !!! | TTTGGTCTTTTTCAGACATG+TGG | + | chr8.4:7342620-7342639 | None:intergenic | 35.0% |
| AACTGATTGCAGATGGCTTT+AGG | + | chr8.4:7342900-7342919 | None:intergenic | 40.0% | |
| ACTTCCTGAACTTAAATCCC+TGG | - | chr8.4:7341799-7341818 | MS.gene012331:CDS | 40.0% | |
| AGGCAAAAAAGCTCACAATC+TGG | + | chr8.4:7343513-7343532 | None:intergenic | 40.0% | |
| ATTGGAGGATCAACAATCCT+TGG | - | chr8.4:7342281-7342300 | MS.gene012331:intron | 40.0% | |
| CAATTATCGTTACAAGCCTC+TGG | - | chr8.4:7343252-7343271 | MS.gene012331:CDS | 40.0% | |
| CCATAACAACTGATTGCAGA+TGG | + | chr8.4:7342907-7342926 | None:intergenic | 40.0% | |
| CCATCTGCAATCAGTTGTTA+TGG | - | chr8.4:7342904-7342923 | MS.gene012331:intron | 40.0% | |
| CCATGCACAAGAGTTTGAAA+AGG | - | chr8.4:7341616-7341635 | MS.gene012331:CDS | 40.0% | |
| CCTCTTACATCTTACACACA+AGG | + | chr8.4:7342662-7342681 | None:intergenic | 40.0% | |
| CCTTGTGTGTAAGATGTAAG+AGG | - | chr8.4:7342659-7342678 | MS.gene012331:intron | 40.0% | |
| CTTACATCTTACACACAAGG+CGG | + | chr8.4:7342659-7342678 | None:intergenic | 40.0% | |
| GCAAAAAAGCTCACAATCTG+GGG | + | chr8.4:7343511-7343530 | None:intergenic | 40.0% | |
| GCCATTTCAGGAAAGAACAT+TGG | - | chr8.4:7343396-7343415 | MS.gene012331:CDS | 40.0% | |
| GGCAAAAAAGCTCACAATCT+GGG | + | chr8.4:7343512-7343531 | None:intergenic | 40.0% | |
| GGGAAAATGATTGAGAGCTT+TGG | + | chr8.4:7342638-7342657 | None:intergenic | 40.0% | |
| GGGACATTCATAATCAATGC+CGG | + | chr8.4:7343491-7343510 | None:intergenic | 40.0% | |
| GTACCACAAAAACCTGAAGA+AGG | + | chr8.4:7342110-7342129 | None:intergenic | 40.0% | |
| TATCGGATATCTAGAGGGAT+AGG | + | chr8.4:7342364-7342383 | None:intergenic | 40.0% | |
| TGGACTCTCTCCAAATTGAA+CGG | - | chr8.4:7343272-7343291 | MS.gene012331:CDS | 40.0% | |
| TGTTATGGAAAGAAGGCTCA+AGG | - | chr8.4:7342919-7342938 | MS.gene012331:intron | 40.0% | |
| TTACATCTTACACACAAGGC+GGG | + | chr8.4:7342658-7342677 | None:intergenic | 40.0% | |
| TTGGGATGAACATCTTCTGA+AGG | + | chr8.4:7342132-7342151 | None:intergenic | 40.0% | |
| ! | CCTTTTCAAACTCTTGTGCA+TGG | + | chr8.4:7341619-7341638 | None:intergenic | 40.0% |
| ! | GCAACAATTTTTGCAACCTC+AGG | + | chr8.4:7342054-7342073 | None:intergenic | 40.0% |
| ! | GCTTTTCTTTGTAGATGGAG+AGG | - | chr8.4:7343226-7343245 | MS.gene012331:CDS | 40.0% |
| !! | ACACCTTCTTCAGGTTTTTG+TGG | - | chr8.4:7342104-7342123 | MS.gene012331:intron | 40.0% |
| !!! | AACAGGGGAAGTATTTTCCA+GGG | + | chr8.4:7341819-7341838 | None:intergenic | 40.0% |
| AAAAAATCAGCAGCAGCAGC+AGG | + | chr8.4:7341663-7341682 | None:intergenic | 45.0% | |
| AAAAATCAGCAGCAGCAGCA+GGG | + | chr8.4:7341662-7341681 | None:intergenic | 45.0% | |
| AGGATCAACAATCCTTGGCT+GGG | - | chr8.4:7342286-7342305 | MS.gene012331:intron | 45.0% | |
| ATGCGAGCAATGTACAGAAC+AGG | + | chr8.4:7341836-7341855 | None:intergenic | 45.0% | |
| CATGTCGTTCCCGTTCAATT+TGG | + | chr8.4:7343285-7343304 | None:intergenic | 45.0% | |
| CGTAAAATGATAGAGGCTGC+CGG | - | chr8.4:7343469-7343488 | MS.gene012331:intron | 45.0% | |
| GGACTCTCTCCAAATTGAAC+GGG | - | chr8.4:7343273-7343292 | MS.gene012331:CDS | 45.0% | |
| GGATGGTCAAAACAGCTACT+CGG | + | chr8.4:7343544-7343563 | None:intergenic | 45.0% | |
| TACATTGCTCGCATTCCACA+CGG | - | chr8.4:7341842-7341861 | MS.gene012331:intron | 45.0% | |
| TCAATTTGGAGAGAGTCCAG+AGG | + | chr8.4:7343271-7343290 | None:intergenic | 45.0% | |
| TGCGAGCAATGTACAGAACA+GGG | + | chr8.4:7341835-7341854 | None:intergenic | 45.0% | |
| TTCTACGAGATGGAGATGGA+TGG | - | chr8.4:7341866-7341885 | MS.gene012331:intron | 45.0% | |
| ! | ACAGCTACTCGGTGAAAGAA+AGG | + | chr8.4:7343533-7343552 | None:intergenic | 45.0% |
| ! | GCTTTTCGAACACCTTCTTC+AGG | - | chr8.4:7342095-7342114 | MS.gene012331:intron | 45.0% |
| !! | GTTGATTTTGTCTCAGCCGT+TGG | - | chr8.4:7341757-7341776 | MS.gene012331:CDS | 45.0% |
| !! | TTATCTTCTTTGGAGCAGGC+TGG | + | chr8.4:7343622-7343641 | None:intergenic | 45.0% |
| !!! | GAACAGGGGAAGTATTTTCC+AGG | + | chr8.4:7341820-7341839 | None:intergenic | 45.0% |
| !!! | TGCTGCTGCTGCTGATTTTT+TGG | - | chr8.4:7341662-7341681 | MS.gene012331:intron | 45.0% |
| ACATTGCTCGCATTCCACAC+GGG | - | chr8.4:7341843-7341862 | MS.gene012331:intron | 50.0% | |
| ACGAGATGGAGATGGATGGT+AGG | - | chr8.4:7341870-7341889 | MS.gene012331:intron | 50.0% | |
| ATCAACAATCCTTGGCTGGG+GGG | - | chr8.4:7342289-7342308 | MS.gene012331:intron | 50.0% | |
| GAGGATCAACAATCCTTGGC+TGG | - | chr8.4:7342285-7342304 | MS.gene012331:intron | 50.0% | |
| GATCAACAATCCTTGGCTGG+GGG | - | chr8.4:7342288-7342307 | MS.gene012331:intron | 50.0% | |
| GCGAGCAATGTACAGAACAG+GGG | + | chr8.4:7341834-7341853 | None:intergenic | 50.0% | |
| GGATCAACAATCCTTGGCTG+GGG | - | chr8.4:7342287-7342306 | MS.gene012331:intron | 50.0% | |
| GTGCATGGCTTTCTTTGCCT+TGG | + | chr8.4:7341604-7341623 | None:intergenic | 50.0% | |
| TGAACGGGAACGACATGACA+AGG | - | chr8.4:7343288-7343307 | MS.gene012331:intron | 50.0% | |
| TTGTCTCAGCCGTTGGATTG+TGG | - | chr8.4:7341764-7341783 | MS.gene012331:CDS | 50.0% | |
| !! | ATGGCTTTAGGCGCTTCATG+CGG | + | chr8.4:7342888-7342907 | None:intergenic | 50.0% |
| AGTTCAGGAAGTTTGCGGCC+AGG | + | chr8.4:7341791-7341810 | None:intergenic | 55.0% | |
| CGGGTTCTACGAGATGGAGA+TGG | - | chr8.4:7341862-7341881 | MS.gene012331:intron | 55.0% | |
| CTAGTTAAACCCCCCAGCCA+AGG | + | chr8.4:7342301-7342320 | None:intergenic | 55.0% | |
| TCCACACGGGTTCTACGAGA+TGG | - | chr8.4:7341856-7341875 | MS.gene012331:intron | 55.0% | |
| TCCATCTCGTAGAACCCGTG+TGG | + | chr8.4:7341860-7341879 | None:intergenic | 55.0% | |
| TTAGGCGCTTCATGCGGCAA+GGG | + | chr8.4:7342882-7342901 | None:intergenic | 55.0% | |
| TTTAGGCGCTTCATGCGGCA+AGG | + | chr8.4:7342883-7342902 | None:intergenic | 55.0% | |
| !! | TCTTCTTTGGAGCAGGCTGG+AGG | + | chr8.4:7343619-7343638 | None:intergenic | 55.0% |
| CAGCCGTTGGATTGTGGTCC+TGG | - | chr8.4:7341770-7341789 | MS.gene012331:CDS | 60.0% | |
| CGGCCAGGACCACAATCCAA+CGG | + | chr8.4:7341776-7341795 | None:intergenic | 60.0% | |
| GCAGCAGCAGCAGGGTGAGA+TGG | + | chr8.4:7341654-7341673 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 7341594 | 7343655 | 7341594 | ID=MS.gene012331 |
| chr8.4 | mRNA | 7341594 | 7343655 | 7341594 | ID=MS.gene012331.t1;Parent=MS.gene012331 |
| chr8.4 | exon | 7343566 | 7343655 | 7343566 | ID=MS.gene012331.t1.exon1;Parent=MS.gene012331.t1 |
| chr8.4 | CDS | 7343566 | 7343655 | 7343566 | ID=cds.MS.gene012331.t1;Parent=MS.gene012331.t1 |
| chr8.4 | exon | 7343362 | 7343476 | 7343362 | ID=MS.gene012331.t1.exon2;Parent=MS.gene012331.t1 |
| chr8.4 | CDS | 7343362 | 7343476 | 7343362 | ID=cds.MS.gene012331.t1;Parent=MS.gene012331.t1 |
| chr8.4 | exon | 7343095 | 7343296 | 7343095 | ID=MS.gene012331.t1.exon3;Parent=MS.gene012331.t1 |
| chr8.4 | CDS | 7343095 | 7343296 | 7343095 | ID=cds.MS.gene012331.t1;Parent=MS.gene012331.t1 |
| chr8.4 | exon | 7341940 | 7342009 | 7341940 | ID=MS.gene012331.t1.exon4;Parent=MS.gene012331.t1 |
| chr8.4 | CDS | 7341940 | 7342009 | 7341940 | ID=cds.MS.gene012331.t1;Parent=MS.gene012331.t1 |
| chr8.4 | exon | 7341733 | 7341843 | 7341733 | ID=MS.gene012331.t1.exon5;Parent=MS.gene012331.t1 |
| chr8.4 | CDS | 7341733 | 7341843 | 7341733 | ID=cds.MS.gene012331.t1;Parent=MS.gene012331.t1 |
| chr8.4 | exon | 7341594 | 7341641 | 7341594 | ID=MS.gene012331.t1.exon6;Parent=MS.gene012331.t1 |
| chr8.4 | CDS | 7341594 | 7341641 | 7341594 | ID=cds.MS.gene012331.t1;Parent=MS.gene012331.t1 |
| Gene Sequence |
| Protein sequence |
