Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57660.t1 | GAU24300.1 | 86.2 | 210 | 27 | 1 | 1 | 210 | 35 | 242 | 3.80E-99 | 370.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57660.t1 | O74978 | 45.2 | 155 | 85 | 0 | 38 | 192 | 92 | 246 | 2.8e-34 | 146.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57660.t1 | A0A2Z6ML98 | 86.2 | 210 | 27 | 1 | 1 | 210 | 35 | 242 | 2.8e-99 | 370.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57660.t1 | MTR_4g127330 | 93.855 | 179 | 11 | 0 | 1 | 179 | 1 | 179 | 1.70e-124 | 349 |
| MS.gene57660.t1 | MTR_1g108290 | 88.205 | 195 | 21 | 1 | 16 | 210 | 20 | 212 | 3.15e-119 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57660.t1 | AT5G04600 | 62.304 | 191 | 71 | 1 | 20 | 209 | 28 | 218 | 6.51e-91 | 266 |
Find 39 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGGAAAATCAAGACATTT+TGG | 0.197189 | 8.4:-7331646 | MS.gene57660:CDS |
| ACTTCGAACTTTATCTTCTT+TGG | 0.221836 | 8.4:+7330026 | None:intergenic |
| GGCAATTCTCAATCTCTTAA+TGG | 0.261298 | 8.4:+7331681 | None:intergenic |
| CATGTCGTTCCCGTTCAATT+TGG | 0.309401 | 8.4:+7330373 | None:intergenic |
| CAGCCGTTGGATTGTGGTCC+TGG | 0.355366 | 8.4:-7331885 | MS.gene57660:CDS |
| GTGCATGGCTTTCTTTGCCT+TGG | 0.362218 | 8.4:+7332054 | None:intergenic |
| AACTTTATCTTCTTTGGAGC+AGG | 0.403899 | 8.4:+7330032 | None:intergenic |
| ATGCGAGCAATGTACAGAAC+AGG | 0.435394 | 8.4:+7331822 | None:intergenic |
| CAATTATCGTTACAAGCCTC+TGG | 0.449754 | 8.4:-7330403 | MS.gene57660:CDS |
| TAATTAGTAACTTACAAATT+GGG | 0.454040 | 8.4:+7331508 | None:intergenic |
| GGACTCTCTCCAAATTGAAC+GGG | 0.463008 | 8.4:-7330382 | MS.gene57660:CDS |
| TTATCTTCTTTGGAGCAGGC+TGG | 0.486343 | 8.4:+7330036 | None:intergenic |
| GCAGCAGCAGCAGGGTGAGA+TGG | 0.504318 | 8.4:+7332004 | None:intergenic |
| ATTTAAGTTCAGGAAGTTTG+CGG | 0.507275 | 8.4:+7331862 | None:intergenic |
| AAAACGTCGTAAAATGATAG+AGG | 0.508535 | 8.4:-7330193 | MS.gene57660:CDS |
| TACATTGCTCGCATTCCACA+CGG | 0.516540 | 8.4:-7331813 | MS.gene57660:CDS |
| TTGTCTCAGCCGTTGGATTG+TGG | 0.523207 | 8.4:-7331891 | MS.gene57660:intron |
| ACTTCCTGAACTTAAATCCC+TGG | 0.525683 | 8.4:-7331856 | MS.gene57660:CDS |
| GCCATTTCAGGAAAGAACAT+TGG | 0.534975 | 8.4:-7330259 | MS.gene57660:intron |
| AGTTCAGGAAGTTTGCGGCC+AGG | 0.544607 | 8.4:+7331867 | None:intergenic |
| TTAAGAGATTGAGAATTGCC+AGG | 0.546505 | 8.4:-7331678 | MS.gene57660:CDS |
| CCATGCACAAGAGTTTGAAA+AGG | 0.560682 | 8.4:-7332039 | MS.gene57660:CDS |
| TCTTCTTTGGAGCAGGCTGG+AGG | 0.568236 | 8.4:+7330039 | None:intergenic |
| TCCACACGGGTTCTACGAGA+TGG | 0.570256 | 8.4:-7331799 | MS.gene57660:CDS |
| CATAGAATTTGAATCTCCTG+AGG | 0.575091 | 8.4:-7331620 | MS.gene57660:CDS |
| GAGCATTGAGATGGGGACCA+AGG | 0.576294 | 8.4:-7332071 | None:intergenic |
| TGGACTCTCTCCAAATTGAA+CGG | 0.577893 | 8.4:-7330383 | MS.gene57660:CDS |
| GGGACATTCATAATCAATGC+CGG | 0.584899 | 8.4:+7330167 | None:intergenic |
| CGGGTTCTACGAGATGGAGA+TGG | 0.590555 | 8.4:-7331793 | MS.gene57660:CDS |
| CGTAAAATGATAGAGGCTGC+CGG | 0.596257 | 8.4:-7330186 | MS.gene57660:CDS |
| TTGGGATGAACATCTTCTGA+AGG | 0.613448 | 8.4:+7331526 | None:intergenic |
| TGCGAGCAATGTACAGAACA+GGG | 0.622218 | 8.4:+7331823 | None:intergenic |
| CGGCCAGGACCACAATCCAA+CGG | 0.630149 | 8.4:+7331882 | None:intergenic |
| TGAACGGGAACGACATGACA+AGG | 0.640978 | 8.4:-7330367 | MS.gene57660:intron |
| ACATTGCTCGCATTCCACAC+GGG | 0.659129 | 8.4:-7331812 | MS.gene57660:CDS |
| TTCTACGAGATGGAGATGGA+TGG | 0.665561 | 8.4:-7331789 | MS.gene57660:intron |
| TCCATCTCGTAGAACCCGTG+TGG | 0.670939 | 8.4:+7331798 | None:intergenic |
| TCAATTTGGAGAGAGTCCAG+AGG | 0.681598 | 8.4:+7330387 | None:intergenic |
| GCGAGCAATGTACAGAACAG+GGG | 0.718926 | 8.4:+7331824 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATTAAAAAAAAAAAAG+AGG | - | chr8.4:7331221-7331240 | MS.gene57660:intron | 10.0% |
| !! | ACTATTCATTTATATATAAG+AGG | - | chr8.4:7331249-7331268 | MS.gene57660:intron | 15.0% |
| !! | ATAATCATAAAGATGTTTAT+CGG | + | chr8.4:7330809-7330828 | None:intergenic | 15.0% |
| !! | ATATGTGTTTATCAATTTAT+TGG | - | chr8.4:7330349-7330368 | MS.gene57660:intron | 15.0% |
| !! | TAATTAGTAACTTACAAATT+GGG | + | chr8.4:7330578-7330597 | None:intergenic | 15.0% |
| !! | TTTAACTAGAATTATTTGAA+AGG | - | chr8.4:7330740-7330759 | MS.gene57660:intron | 15.0% |
| !!! | TTTTGTAATTGTATTTTGTA+CGG | + | chr8.4:7331481-7331500 | None:intergenic | 15.0% |
| !! | AAAATAAGAAATTCTATTGG+AGG | - | chr8.4:7330694-7330713 | MS.gene57660:intron | 20.0% |
| !! | AACAGCAATTAGATATAATA+TGG | + | chr8.4:7332012-7332031 | None:intergenic | 20.0% |
| !! | GAAACAAATCATTTAAACTT+AGG | + | chr8.4:7331594-7331613 | None:intergenic | 20.0% |
| !! | GAGAAAATAAGAAATTCTAT+TGG | - | chr8.4:7330691-7330710 | MS.gene57660:intron | 20.0% |
| !! | GATAAACATCTTTATGATTA+TGG | - | chr8.4:7330808-7330827 | MS.gene57660:intron | 20.0% |
| !! | GTAATTAGTAACTTACAAAT+TGG | + | chr8.4:7330579-7330598 | None:intergenic | 20.0% |
| !!! | AAAAGTCTCTCATTTATTTT+GGG | + | chr8.4:7330913-7330932 | None:intergenic | 20.0% |
| !!! | ATTGTATTTTGTACGATATA+TGG | + | chr8.4:7331376-7331395 | None:intergenic | 20.0% |
| !!! | TAAAAGTCTCTCATTTATTT+TGG | + | chr8.4:7330914-7330933 | None:intergenic | 20.0% |
| !!! | TACAGTTTAAGTTTTTTTGA+AGG | - | chr8.4:7330325-7330344 | MS.gene57660:intron | 20.0% |
| !!! | TATTCTTCTTGATGATATTT+AGG | + | chr8.4:7331620-7331639 | None:intergenic | 20.0% |
| !!! | TTACTAATTACTTCTTTTGT+AGG | - | chr8.4:7330588-7330607 | MS.gene57660:intron | 20.0% |
| !!! | TTTTACAGTTAATGTTATGT+TGG | + | chr8.4:7331405-7331424 | None:intergenic | 20.0% |
| !!! | TTTTGTATTTTGTGCTATTA+TGG | - | chr8.4:7331765-7331784 | MS.gene57660:intron | 20.0% |
| ! | CAAAAATGAATTTGAACTGA+TGG | - | chr8.4:7331552-7331571 | MS.gene57660:CDS | 25.0% |
| ! | CTAGAATTATTTGAAAGGAA+AGG | - | chr8.4:7330745-7330764 | MS.gene57660:intron | 25.0% |
| ! | TTTGTTAGAAATCAGAATGA+AGG | - | chr8.4:7331134-7331153 | MS.gene57660:intron | 25.0% |
| !! | TGCTGTTTGTATTGATATAT+TGG | - | chr8.4:7331194-7331213 | MS.gene57660:intron | 25.0% |
| AAAACGTCGTAAAATGATAG+AGG | - | chr8.4:7331890-7331909 | MS.gene57660:intron | 30.0% | |
| AATCAGTTGTTATGGAAAGA+AGG | - | chr8.4:7331340-7331359 | MS.gene57660:intron | 30.0% | |
| AATTTCCTTCCTTAACATTG+TGG | + | chr8.4:7330986-7331005 | None:intergenic | 30.0% | |
| ACTTCGAACTTTATCTTCTT+TGG | + | chr8.4:7332060-7332079 | None:intergenic | 30.0% | |
| AGATACCATACTCTAATAGT+TGG | - | chr8.4:7330942-7330961 | MS.gene57660:intron | 30.0% | |
| AGGAAATTCTAATAGTTGGT+AGG | - | chr8.4:7330998-7331017 | MS.gene57660:intron | 30.0% | |
| AGGAAGGAAATTCTAATAGT+TGG | - | chr8.4:7330994-7331013 | MS.gene57660:intron | 30.0% | |
| ATGGTTAAAAATTCGAGTCA+TGG | + | chr8.4:7331993-7332012 | None:intergenic | 30.0% | |
| ATGTTTATCGGATATCTAGA+GGG | + | chr8.4:7330797-7330816 | None:intergenic | 30.0% | |
| ATTTCCTTCCTTAACATTGT+GGG | + | chr8.4:7330985-7331004 | None:intergenic | 30.0% | |
| GTAACAGAACTATGTATTCA+AGG | - | chr8.4:7331437-7331456 | MS.gene57660:intron | 30.0% | |
| TATCATATCCCACAATGTTA+AGG | - | chr8.4:7330974-7330993 | MS.gene57660:intron | 30.0% | |
| TGGTGCTCTGTTTAAAAAAA+AGG | - | chr8.4:7331785-7331804 | MS.gene57660:intron | 30.0% | |
| TTAAAAATTCGAGTCATGGA+TGG | + | chr8.4:7331989-7332008 | None:intergenic | 30.0% | |
| TTGTACGGTATATCATTGTA+TGG | + | chr8.4:7331466-7331485 | None:intergenic | 30.0% | |
| ! | AACACAAAAAGTTGATTGAC+AGG | - | chr8.4:7331850-7331869 | MS.gene57660:CDS | 30.0% |
| ! | ACACAAAAAGTTGATTGACA+GGG | - | chr8.4:7331851-7331870 | MS.gene57660:CDS | 30.0% |
| ! | ACTGGAAAATCAAGACATTT+TGG | - | chr8.4:7330437-7330456 | MS.gene57660:intron | 30.0% |
| ! | ATCTAATTGCTGTTACAGAT+GGG | - | chr8.4:7332018-7332037 | MS.gene57660:CDS | 30.0% |
| ! | ATTTAAGTTCAGGAAGTTTG+CGG | + | chr8.4:7330224-7330243 | None:intergenic | 30.0% |
| ! | GTAAAGCTTTTCTTTGTAGA+TGG | - | chr8.4:7331649-7331668 | MS.gene57660:CDS | 30.0% |
| ! | GTATTTTGTACGATATATGG+TGG | + | chr8.4:7331373-7331392 | None:intergenic | 30.0% |
| ! | TATCTAATTGCTGTTACAGA+TGG | - | chr8.4:7332017-7332036 | MS.gene57660:CDS | 30.0% |
| ! | TTTTCCAGTCTTTTTATTCC+TGG | + | chr8.4:7330426-7330445 | None:intergenic | 30.0% |
| !! | TTGGTTTTTGCAGCTTATTT+TGG | - | chr8.4:7330368-7330387 | MS.gene57660:CDS | 30.0% |
| !!! | TCTCATTTATTTTGGGAGAA+GGG | + | chr8.4:7330906-7330925 | None:intergenic | 30.0% |
| AAGATGTAAGAGGACATATC+TGG | - | chr8.4:7331097-7331116 | MS.gene57660:intron | 35.0% | |
| ACCATACTCTAATAGTTGGT+AGG | - | chr8.4:7330946-7330965 | MS.gene57660:intron | 35.0% | |
| ATATCCCACAATGTTAAGGA+AGG | - | chr8.4:7330978-7330997 | MS.gene57660:intron | 35.0% | |
| ATTGCCAGGAATAAAAAGAC+TGG | - | chr8.4:7330419-7330438 | MS.gene57660:intron | 35.0% | |
| CATAGAATTTGAATCTCCTG+AGG | - | chr8.4:7330463-7330482 | MS.gene57660:intron | 35.0% | |
| CATATCTGGTCAATCAGTTT+AGG | - | chr8.4:7331111-7331130 | MS.gene57660:intron | 35.0% | |
| GATGATACTGTCAAAGTTGT+AGG | - | chr8.4:7330842-7330861 | MS.gene57660:intron | 35.0% | |
| GATGTTTATCGGATATCTAG+AGG | + | chr8.4:7330798-7330817 | None:intergenic | 35.0% | |
| GGCAATTCTCAATCTCTTAA+TGG | + | chr8.4:7330405-7330424 | None:intergenic | 35.0% | |
| TACGGTATATCATTGTATGG+CGG | + | chr8.4:7331463-7331482 | None:intergenic | 35.0% | |
| TCCAATGTTCTTTCCTGAAA+TGG | + | chr8.4:7331828-7331847 | None:intergenic | 35.0% | |
| TCCTACCAACTATTAGAGTA+TGG | + | chr8.4:7330950-7330969 | None:intergenic | 35.0% | |
| TTAAGAGATTGAGAATTGCC+AGG | - | chr8.4:7330405-7330424 | MS.gene57660:CDS | 35.0% | |
| TTTCAGACATGTGGTGTATT+TGG | + | chr8.4:7331039-7331058 | None:intergenic | 35.0% | |
| ! | ACAAGGTATTTAGTGTGATG+AGG | - | chr8.4:7331733-7331752 | MS.gene57660:intron | 35.0% |
| ! | TTCATTATTGCTGCCATTTC+AGG | - | chr8.4:7331812-7331831 | MS.gene57660:CDS | 35.0% |
| !! | AACTTTATCTTCTTTGGAGC+AGG | + | chr8.4:7332054-7332073 | None:intergenic | 35.0% |
| !! | TTTTCCAGGGATTTAAGTTC+AGG | + | chr8.4:7330234-7330253 | None:intergenic | 35.0% |
| !!! | CTCTCATTTATTTTGGGAGA+AGG | + | chr8.4:7330907-7330926 | None:intergenic | 35.0% |
| !!! | GCAGCTTATTTTGGACAATT+CGG | - | chr8.4:7330377-7330396 | MS.gene57660:CDS | 35.0% |
| !!! | TTTGGTCTTTTTCAGACATG+TGG | + | chr8.4:7331048-7331067 | None:intergenic | 35.0% |
| AACTGATTGCAGATGGCTTT+AGG | + | chr8.4:7331328-7331347 | None:intergenic | 40.0% | |
| ACTTCCTGAACTTAAATCCC+TGG | - | chr8.4:7330227-7330246 | MS.gene57660:CDS | 40.0% | |
| AGGCAAAAAAGCTCACAATC+TGG | + | chr8.4:7331941-7331960 | None:intergenic | 40.0% | |
| ATTGGAGGATCAACAATCCT+TGG | - | chr8.4:7330709-7330728 | MS.gene57660:intron | 40.0% | |
| CAATTATCGTTACAAGCCTC+TGG | - | chr8.4:7331680-7331699 | MS.gene57660:CDS | 40.0% | |
| CCATAACAACTGATTGCAGA+TGG | + | chr8.4:7331335-7331354 | None:intergenic | 40.0% | |
| CCATCTGCAATCAGTTGTTA+TGG | - | chr8.4:7331332-7331351 | MS.gene57660:intron | 40.0% | |
| CCATGCACAAGAGTTTGAAA+AGG | - | chr8.4:7330044-7330063 | MS.gene57660:CDS | 40.0% | |
| CCTCTTACATCTTACACACA+AGG | + | chr8.4:7331090-7331109 | None:intergenic | 40.0% | |
| CCTTGTGTGTAAGATGTAAG+AGG | - | chr8.4:7331087-7331106 | MS.gene57660:intron | 40.0% | |
| CTTACATCTTACACACAAGG+CGG | + | chr8.4:7331087-7331106 | None:intergenic | 40.0% | |
| GCAAAAAAGCTCACAATCTG+GGG | + | chr8.4:7331939-7331958 | None:intergenic | 40.0% | |
| GCCATTTCAGGAAAGAACAT+TGG | - | chr8.4:7331824-7331843 | MS.gene57660:CDS | 40.0% | |
| GGCAAAAAAGCTCACAATCT+GGG | + | chr8.4:7331940-7331959 | None:intergenic | 40.0% | |
| GGGAAAATGATTGAGAGCTT+TGG | + | chr8.4:7331066-7331085 | None:intergenic | 40.0% | |
| GGGACATTCATAATCAATGC+CGG | + | chr8.4:7331919-7331938 | None:intergenic | 40.0% | |
| GTACCACAAAAACCTGAAGA+AGG | + | chr8.4:7330538-7330557 | None:intergenic | 40.0% | |
| TATCGGATATCTAGAGGGAT+AGG | + | chr8.4:7330792-7330811 | None:intergenic | 40.0% | |
| TGGACTCTCTCCAAATTGAA+CGG | - | chr8.4:7331700-7331719 | MS.gene57660:CDS | 40.0% | |
| TGTTATGGAAAGAAGGCTCA+AGG | - | chr8.4:7331347-7331366 | MS.gene57660:intron | 40.0% | |
| TTACATCTTACACACAAGGC+GGG | + | chr8.4:7331086-7331105 | None:intergenic | 40.0% | |
| TTGGGATGAACATCTTCTGA+AGG | + | chr8.4:7330560-7330579 | None:intergenic | 40.0% | |
| ! | CCTTTTCAAACTCTTGTGCA+TGG | + | chr8.4:7330047-7330066 | None:intergenic | 40.0% |
| ! | GCAACAATTTTTGCAACCTC+AGG | + | chr8.4:7330482-7330501 | None:intergenic | 40.0% |
| ! | GCTTTTCTTTGTAGATGGAG+AGG | - | chr8.4:7331654-7331673 | MS.gene57660:CDS | 40.0% |
| !! | ACACCTTCTTCAGGTTTTTG+TGG | - | chr8.4:7330532-7330551 | MS.gene57660:intron | 40.0% |
| !!! | AACAGGGGAAGTATTTTCCA+GGG | + | chr8.4:7330247-7330266 | None:intergenic | 40.0% |
| AAAAAATCAGCAGCAGCAGC+AGG | + | chr8.4:7330091-7330110 | None:intergenic | 45.0% | |
| AAAAATCAGCAGCAGCAGCA+GGG | + | chr8.4:7330090-7330109 | None:intergenic | 45.0% | |
| AGGATCAACAATCCTTGGCT+GGG | - | chr8.4:7330714-7330733 | MS.gene57660:intron | 45.0% | |
| ATGCGAGCAATGTACAGAAC+AGG | + | chr8.4:7330264-7330283 | None:intergenic | 45.0% | |
| CATGTCGTTCCCGTTCAATT+TGG | + | chr8.4:7331713-7331732 | None:intergenic | 45.0% | |
| CGTAAAATGATAGAGGCTGC+CGG | - | chr8.4:7331897-7331916 | MS.gene57660:intron | 45.0% | |
| GGACTCTCTCCAAATTGAAC+GGG | - | chr8.4:7331701-7331720 | MS.gene57660:CDS | 45.0% | |
| GGATGGTCAAAACAGCTACT+CGG | + | chr8.4:7331972-7331991 | None:intergenic | 45.0% | |
| TACATTGCTCGCATTCCACA+CGG | - | chr8.4:7330270-7330289 | MS.gene57660:intron | 45.0% | |
| TCAATTTGGAGAGAGTCCAG+AGG | + | chr8.4:7331699-7331718 | None:intergenic | 45.0% | |
| TGCGAGCAATGTACAGAACA+GGG | + | chr8.4:7330263-7330282 | None:intergenic | 45.0% | |
| TTCTACGAGATGGAGATGGA+TGG | - | chr8.4:7330294-7330313 | MS.gene57660:intron | 45.0% | |
| ! | ACAGCTACTCGGTGAAAGAA+AGG | + | chr8.4:7331961-7331980 | None:intergenic | 45.0% |
| ! | GCTTTTCGAACACCTTCTTC+AGG | - | chr8.4:7330523-7330542 | MS.gene57660:intron | 45.0% |
| !! | GTTGATTTTGTCTCAGCCGT+TGG | - | chr8.4:7330185-7330204 | MS.gene57660:CDS | 45.0% |
| !! | TTATCTTCTTTGGAGCAGGC+TGG | + | chr8.4:7332050-7332069 | None:intergenic | 45.0% |
| !!! | GAACAGGGGAAGTATTTTCC+AGG | + | chr8.4:7330248-7330267 | None:intergenic | 45.0% |
| !!! | TGCTGCTGCTGCTGATTTTT+TGG | - | chr8.4:7330090-7330109 | MS.gene57660:intron | 45.0% |
| ACATTGCTCGCATTCCACAC+GGG | - | chr8.4:7330271-7330290 | MS.gene57660:intron | 50.0% | |
| ACGAGATGGAGATGGATGGT+AGG | - | chr8.4:7330298-7330317 | MS.gene57660:intron | 50.0% | |
| ATCAACAATCCTTGGCTGGG+GGG | - | chr8.4:7330717-7330736 | MS.gene57660:intron | 50.0% | |
| GAGGATCAACAATCCTTGGC+TGG | - | chr8.4:7330713-7330732 | MS.gene57660:intron | 50.0% | |
| GATCAACAATCCTTGGCTGG+GGG | - | chr8.4:7330716-7330735 | MS.gene57660:intron | 50.0% | |
| GCGAGCAATGTACAGAACAG+GGG | + | chr8.4:7330262-7330281 | None:intergenic | 50.0% | |
| GGATCAACAATCCTTGGCTG+GGG | - | chr8.4:7330715-7330734 | MS.gene57660:intron | 50.0% | |
| GTGCATGGCTTTCTTTGCCT+TGG | + | chr8.4:7330032-7330051 | None:intergenic | 50.0% | |
| TGAACGGGAACGACATGACA+AGG | - | chr8.4:7331716-7331735 | MS.gene57660:intron | 50.0% | |
| TTGTCTCAGCCGTTGGATTG+TGG | - | chr8.4:7330192-7330211 | MS.gene57660:CDS | 50.0% | |
| !! | ATGGCTTTAGGCGCTTCATG+CGG | + | chr8.4:7331316-7331335 | None:intergenic | 50.0% |
| AGTTCAGGAAGTTTGCGGCC+AGG | + | chr8.4:7330219-7330238 | None:intergenic | 55.0% | |
| CGGGTTCTACGAGATGGAGA+TGG | - | chr8.4:7330290-7330309 | MS.gene57660:intron | 55.0% | |
| CTAGTTAAACCCCCCAGCCA+AGG | + | chr8.4:7330729-7330748 | None:intergenic | 55.0% | |
| TCCACACGGGTTCTACGAGA+TGG | - | chr8.4:7330284-7330303 | MS.gene57660:intron | 55.0% | |
| TCCATCTCGTAGAACCCGTG+TGG | + | chr8.4:7330288-7330307 | None:intergenic | 55.0% | |
| TTAGGCGCTTCATGCGGCAA+GGG | + | chr8.4:7331310-7331329 | None:intergenic | 55.0% | |
| TTTAGGCGCTTCATGCGGCA+AGG | + | chr8.4:7331311-7331330 | None:intergenic | 55.0% | |
| !! | TCTTCTTTGGAGCAGGCTGG+AGG | + | chr8.4:7332047-7332066 | None:intergenic | 55.0% |
| CAGCCGTTGGATTGTGGTCC+TGG | - | chr8.4:7330198-7330217 | MS.gene57660:CDS | 60.0% | |
| CGGCCAGGACCACAATCCAA+CGG | + | chr8.4:7330204-7330223 | None:intergenic | 60.0% | |
| GCAGCAGCAGCAGGGTGAGA+TGG | + | chr8.4:7330082-7330101 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 7330022 | 7332083 | 7330022 | ID=MS.gene57660 |
| chr8.4 | mRNA | 7330022 | 7332083 | 7330022 | ID=MS.gene57660.t1;Parent=MS.gene57660 |
| chr8.4 | exon | 7331994 | 7332083 | 7331994 | ID=MS.gene57660.t1.exon1;Parent=MS.gene57660.t1 |
| chr8.4 | CDS | 7331994 | 7332083 | 7331994 | ID=cds.MS.gene57660.t1;Parent=MS.gene57660.t1 |
| chr8.4 | exon | 7331790 | 7331904 | 7331790 | ID=MS.gene57660.t1.exon2;Parent=MS.gene57660.t1 |
| chr8.4 | CDS | 7331790 | 7331904 | 7331790 | ID=cds.MS.gene57660.t1;Parent=MS.gene57660.t1 |
| chr8.4 | exon | 7331523 | 7331724 | 7331523 | ID=MS.gene57660.t1.exon3;Parent=MS.gene57660.t1 |
| chr8.4 | CDS | 7331523 | 7331724 | 7331523 | ID=cds.MS.gene57660.t1;Parent=MS.gene57660.t1 |
| chr8.4 | exon | 7330368 | 7330437 | 7330368 | ID=MS.gene57660.t1.exon4;Parent=MS.gene57660.t1 |
| chr8.4 | CDS | 7330368 | 7330437 | 7330368 | ID=cds.MS.gene57660.t1;Parent=MS.gene57660.t1 |
| chr8.4 | exon | 7330161 | 7330271 | 7330161 | ID=MS.gene57660.t1.exon5;Parent=MS.gene57660.t1 |
| chr8.4 | CDS | 7330161 | 7330271 | 7330161 | ID=cds.MS.gene57660.t1;Parent=MS.gene57660.t1 |
| chr8.4 | exon | 7330022 | 7330069 | 7330022 | ID=MS.gene57660.t1.exon6;Parent=MS.gene57660.t1 |
| chr8.4 | CDS | 7330022 | 7330069 | 7330022 | ID=cds.MS.gene57660.t1;Parent=MS.gene57660.t1 |
| Gene Sequence |
| Protein sequence |
