Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75054.t1 | XP_024642002.1 | 99.2 | 121 | 1 | 0 | 1 | 121 | 1 | 121 | 6.50E-59 | 236.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75054.t1 | Q9M573 | 86.0 | 121 | 17 | 0 | 1 | 121 | 1 | 121 | 1.3e-52 | 206.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75054.t1 | G7KIQ1 | 99.2 | 121 | 1 | 0 | 1 | 121 | 1 | 121 | 4.7e-59 | 236.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75054.t1 | MTR_6g091630 | 99.174 | 121 | 1 | 0 | 1 | 121 | 1 | 121 | 1.12e-84 | 243 |
MS.gene75054.t1 | MTR_8g101980 | 96.694 | 121 | 4 | 0 | 1 | 121 | 1 | 121 | 1.18e-82 | 237 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75054.t1 | AT5G56710 | 83.333 | 114 | 19 | 0 | 8 | 121 | 6 | 119 | 5.97e-67 | 197 |
MS.gene75054.t1 | AT4G26230 | 84.211 | 114 | 18 | 0 | 8 | 121 | 6 | 119 | 7.43e-67 | 197 |
MS.gene75054.t1 | AT2G19740 | 80.833 | 120 | 22 | 1 | 2 | 121 | 1 | 119 | 7.12e-66 | 195 |
MS.gene75054.t1 | AT5G56710 | 57.895 | 114 | 14 | 1 | 8 | 121 | 6 | 85 | 1.15e-37 | 122 |
Find 38 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATCTCCTTGATAGCTTT+TGG | 0.199036 | 6.3:+83703277 | None:intergenic |
ATTCCTAAAGAAGAGTTAAA+AGG | 0.277484 | 6.3:-83703073 | MS.gene75054:CDS |
TAAAGAAGAGTTAAAAGGTT+TGG | 0.305277 | 6.3:-83703068 | MS.gene75054:CDS |
TCAAGCTGAACAAGGCTATC+TGG | 0.323250 | 6.3:-83703207 | MS.gene75054:CDS |
AAAGAAGAGTTAAAAGGTTT+GGG | 0.335880 | 6.3:-83703067 | MS.gene75054:CDS |
GATCAGAAAATTTGCTCAAA+AGG | 0.384063 | 6.3:-83703260 | MS.gene75054:CDS |
TTGGGACACTTCTGATTCCC+TGG | 0.397200 | 6.3:+83703182 | None:intergenic |
GAAGTGTCCCAAGGAGGATC+AGG | 0.403517 | 6.3:-83703171 | MS.gene75054:CDS |
GTCTTCATCATCGATGATCT+TGG | 0.459511 | 6.3:+83703042 | None:intergenic |
ATGCGTACCCTGATCCTCCT+TGG | 0.463330 | 6.3:+83703163 | None:intergenic |
AAGATTGAAATTACCATCCA+TGG | 0.468912 | 6.3:+83705764 | None:intergenic |
GAAGGCACCAAAAGCTATCA+AGG | 0.472855 | 6.3:-83703284 | MS.gene75054:CDS |
TGCGTACCCTGATCCTCCTT+GGG | 0.477887 | 6.3:+83703164 | None:intergenic |
GAACAAGGCTATCTGGAGCC+AGG | 0.480113 | 6.3:-83703200 | MS.gene75054:CDS |
ATGGTGGAGAAGGGTGCAGC+AGG | 0.507040 | 6.3:-83705841 | MS.gene75054:CDS |
GAGACGCTTGTGGAGATTGA+TGG | 0.526766 | 6.3:+83705786 | None:intergenic |
GAAGCTGAAAATGGTGGAGA+AGG | 0.536786 | 6.3:-83705851 | None:intergenic |
AAACAGCACCTTCAAGAAGA+AGG | 0.555549 | 6.3:-83703302 | MS.gene75054:intron |
AATCTCCACAAGCGTCTCCA+TGG | 0.563199 | 6.3:-83705781 | MS.gene75054:CDS |
TCCACAAGCGTCTCCATGGA+TGG | 0.567901 | 6.3:-83705777 | MS.gene75054:intron |
TGCAGCAGGTAGAAAAGAAG+AGG | 0.581022 | 6.3:-83705827 | MS.gene75054:CDS |
TCTAACATCGTTAGTACCCA+TGG | 0.582220 | 6.3:+83703237 | None:intergenic |
AAAATTTGCTCAAAAGGCCA+TGG | 0.583183 | 6.3:-83703254 | MS.gene75054:CDS |
AAAAGAAGAGGTGGTTACAC+GGG | 0.584738 | 6.3:-83705815 | MS.gene75054:CDS |
GAAAAGAAGAGGTGGTTACA+CGG | 0.586191 | 6.3:-83705816 | MS.gene75054:CDS |
ACCATCCATGGAGACGCTTG+TGG | 0.589153 | 6.3:+83705776 | None:intergenic |
GAATTTCAACGACAGTGACA+AGG | 0.604839 | 6.3:+83703092 | None:intergenic |
AAGCTGAAAATGGTGGAGAA+GGG | 0.607163 | 6.3:-83705850 | None:intergenic |
AACAAGGCTATCTGGAGCCA+GGG | 0.614836 | 6.3:-83703199 | MS.gene75054:CDS |
GAATGACGACGAAGATGCAA+AGG | 0.619084 | 6.3:-83703128 | MS.gene75054:CDS |
AAGTGTCCCAAGGAGGATCA+GGG | 0.621071 | 6.3:-83703170 | MS.gene75054:CDS |
AAATTTGCTCAAAAGGCCAT+GGG | 0.623564 | 6.3:-83703253 | MS.gene75054:CDS |
AGTTGATGTCAAGCTGAACA+AGG | 0.626602 | 6.3:-83703215 | MS.gene75054:CDS |
AGCAGGTAGAAAAGAAGAGG+TGG | 0.632837 | 6.3:-83705824 | MS.gene75054:CDS |
AGGGAATCAGAAGTGTCCCA+AGG | 0.639457 | 6.3:-83703180 | MS.gene75054:CDS |
AATTTCAACGACAGTGACAA+GGG | 0.644182 | 6.3:+83703093 | None:intergenic |
GGGTACGCATTGCTCGCAAG+AGG | 0.652748 | 6.3:-83703150 | MS.gene75054:CDS |
GAATCAGAAGTGTCCCAAGG+AGG | 0.720888 | 6.3:-83703177 | MS.gene75054:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTATAAGTGTTAATTAA+CGG | - | chr6.3:83703461-83703480 | MS.gene75054:intron | 10.0% |
!!! | ATAATCTTTTAAAGAATTAT+GGG | + | chr6.3:83703543-83703562 | None:intergenic | 10.0% |
!!! | TATAATCTTTTAAAGAATTA+TGG | + | chr6.3:83703544-83703563 | None:intergenic | 10.0% |
!! | TTATGTAACACAATAATTAT+GGG | + | chr6.3:83703767-83703786 | None:intergenic | 15.0% |
!! | AAATGAACAGCATATATTTA+GGG | + | chr6.3:83705206-83705225 | None:intergenic | 20.0% |
!! | ATTAAACTGTTAATCAAAAC+AGG | + | chr6.3:83704255-83704274 | None:intergenic | 20.0% |
!! | CTATTCATGATTTGAAAAAT+CGG | - | chr6.3:83705370-83705389 | MS.gene75054:intron | 20.0% |
!! | CTTATGTAACACAATAATTA+TGG | + | chr6.3:83703768-83703787 | None:intergenic | 20.0% |
!! | TACTAATTTCTGTTTATGTT+TGG | - | chr6.3:83705536-83705555 | MS.gene75054:intron | 20.0% |
!! | TATGTAACACAATAATTATG+GGG | + | chr6.3:83703766-83703785 | None:intergenic | 20.0% |
!! | TTAAACTGTTAATCAAAACA+GGG | + | chr6.3:83704254-83704273 | None:intergenic | 20.0% |
!! | TTGATATTCATATTGTGAAT+TGG | + | chr6.3:83705400-83705419 | None:intergenic | 20.0% |
!!! | CTGTTTTAAAAAAAACATCA+TGG | + | chr6.3:83704140-83704159 | None:intergenic | 20.0% |
!!! | TAAGCTATTTCTATTTCAAA+AGG | - | chr6.3:83703606-83703625 | MS.gene75054:intron | 20.0% |
!!! | TGATATCAAGTTATTTTTTG+TGG | - | chr6.3:83705442-83705461 | MS.gene75054:intron | 20.0% |
!!! | TTTTGTAAGTTATAAGCTAA+GGG | - | chr6.3:83703411-83703430 | MS.gene75054:intron | 20.0% |
!!! | TTTTTGTAAGTTATAAGCTA+AGG | - | chr6.3:83703410-83703429 | MS.gene75054:intron | 20.0% |
! | AAAGAAGAGTTAAAAGGTTT+GGG | - | chr6.3:83705813-83705832 | MS.gene75054:CDS | 25.0% |
! | ACTAAGTTATTTATCCATAC+AGG | + | chr6.3:83703301-83703320 | None:intergenic | 25.0% |
! | ATGAATTCAAAAACAGCTTA+TGG | + | chr6.3:83705097-83705116 | None:intergenic | 25.0% |
! | ATGTAACACAATAATTATGG+GGG | + | chr6.3:83703765-83703784 | None:intergenic | 25.0% |
! | ATTCCTAAAGAAGAGTTAAA+AGG | - | chr6.3:83705807-83705826 | MS.gene75054:CDS | 25.0% |
! | CAAATGAACAGCATATATTT+AGG | + | chr6.3:83705207-83705226 | None:intergenic | 25.0% |
! | CTAAATATATGCTGTTCATT+TGG | - | chr6.3:83705205-83705224 | MS.gene75054:intron | 25.0% |
! | CTAAGTTATTTATCCATACA+GGG | + | chr6.3:83703300-83703319 | None:intergenic | 25.0% |
! | GTGAGTAAATTAATAGTTTG+TGG | - | chr6.3:83705227-83705246 | MS.gene75054:intron | 25.0% |
! | TAAAATAAGCCAATCTAAAC+AGG | + | chr6.3:83703437-83703456 | None:intergenic | 25.0% |
! | TAAAGAAGAGTTAAAAGGTT+TGG | - | chr6.3:83705812-83705831 | MS.gene75054:CDS | 25.0% |
! | TATGAAAATAAGCTGAATAC+AGG | + | chr6.3:83704111-83704130 | None:intergenic | 25.0% |
! | TGTAATCAACTGTTTCAATA+AGG | + | chr6.3:83704079-83704098 | None:intergenic | 25.0% |
! | TTATTTGCATCTAATCCAAA+TGG | - | chr6.3:83703517-83703536 | MS.gene75054:intron | 25.0% |
! | TTTCATGATCTAACTACATT+AGG | - | chr6.3:83704228-83704247 | MS.gene75054:intron | 25.0% |
!! | CTCAAATAAGCTATTTCAAA+AGG | - | chr6.3:83704939-83704958 | MS.gene75054:intron | 25.0% |
!! | TACACTGTGTTAGATAATTT+TGG | - | chr6.3:83703659-83703678 | MS.gene75054:intron | 25.0% |
!! | TCAATTTTGTAGATCTACTA+GGG | - | chr6.3:83703980-83703999 | MS.gene75054:intron | 25.0% |
!! | TGGATTAGATGCAAATAAAT+AGG | + | chr6.3:83703515-83703534 | None:intergenic | 25.0% |
!! | TTCAATTTTGTAGATCTACT+AGG | - | chr6.3:83703979-83703998 | MS.gene75054:intron | 25.0% |
!!! | AAACCTTTTAACTCTTCTTT+AGG | + | chr6.3:83705813-83705832 | None:intergenic | 25.0% |
!!! | TAATATGAATTGAGTTGAGT+TGG | - | chr6.3:83705253-83705272 | MS.gene75054:intron | 25.0% |
!!! | TCCTGTAATATTGTTTTAGT+TGG | - | chr6.3:83703953-83703972 | MS.gene75054:intron | 25.0% |
AAGATTGAAATTACCATCCA+TGG | + | chr6.3:83703119-83703138 | None:intergenic | 30.0% | |
AGTGATGAAATCGATGATTA+TGG | + | chr6.3:83704197-83704216 | None:intergenic | 30.0% | |
ATTCTCTAATGGCATAACAT+TGG | + | chr6.3:83704919-83704938 | None:intergenic | 30.0% | |
GCCAACTAAAACAATATTAC+AGG | + | chr6.3:83703957-83703976 | None:intergenic | 30.0% | |
GCTATGTGTAATTGCATAAT+TGG | - | chr6.3:83705474-83705493 | MS.gene75054:intron | 30.0% | |
TTAAAGAATTATGGGCCATT+TGG | + | chr6.3:83703535-83703554 | None:intergenic | 30.0% | |
! | GATCAGAAAATTTGCTCAAA+AGG | - | chr6.3:83705620-83705639 | MS.gene75054:intron | 30.0% |
! | GCATATATTTAGGGTTTGTT+TGG | + | chr6.3:83705197-83705216 | None:intergenic | 30.0% |
! | GCTTATTTGAGATTCTCTAA+TGG | + | chr6.3:83704930-83704949 | None:intergenic | 30.0% |
! | TATTTAGGGTTTGTTTGGAT+AGG | + | chr6.3:83705192-83705211 | None:intergenic | 30.0% |
! | TCAGTTTTCTGTGTTTACAT+TGG | - | chr6.3:83703899-83703918 | MS.gene75054:intron | 30.0% |
!! | CGTTTCAAATTTGTTGATCT+AGG | - | chr6.3:83703788-83703807 | MS.gene75054:intron | 30.0% |
!!! | TGTTTTTTATAAGCGACTCT+TGG | - | chr6.3:83704819-83704838 | MS.gene75054:intron | 30.0% |
AACACAATAATTATGGGGGA+AGG | + | chr6.3:83703761-83703780 | None:intergenic | 35.0% | |
AATTTCAACGACAGTGACAA+GGG | + | chr6.3:83705790-83705809 | None:intergenic | 35.0% | |
TGTCATTGTTCATAAGTTGC+TGG | + | chr6.3:83705138-83705157 | None:intergenic | 35.0% | |
! | AAAATTTGCTCAAAAGGCCA+TGG | - | chr6.3:83705626-83705645 | MS.gene75054:intron | 35.0% |
! | AAATTTGCTCAAAAGGCCAT+GGG | - | chr6.3:83705627-83705646 | MS.gene75054:intron | 35.0% |
AAAAGAAGAGGTGGTTACAC+GGG | - | chr6.3:83703065-83703084 | MS.gene75054:CDS | 40.0% | |
AAACAGCACCTTCAAGAAGA+AGG | - | chr6.3:83705578-83705597 | MS.gene75054:intron | 40.0% | |
CTATAGATCTAGACCCTGTA+TGG | - | chr6.3:83703284-83703303 | MS.gene75054:CDS | 40.0% | |
CTATTTGCATAAGCTCCTGT+TGG | - | chr6.3:83704040-83704059 | MS.gene75054:intron | 40.0% | |
GAAAAGAAGAGGTGGTTACA+CGG | - | chr6.3:83703064-83703083 | MS.gene75054:CDS | 40.0% | |
GAATTTCAACGACAGTGACA+AGG | + | chr6.3:83705791-83705810 | None:intergenic | 40.0% | |
GTCTTCATCATCGATGATCT+TGG | + | chr6.3:83705841-83705860 | None:intergenic | 40.0% | |
TCTAACATCGTTAGTACCCA+TGG | + | chr6.3:83705646-83705665 | None:intergenic | 40.0% | |
! | AGTTGATGTCAAGCTGAACA+AGG | - | chr6.3:83705665-83705684 | MS.gene75054:intron | 40.0% |
! | ATCTACTAGGGTGTTAGGAT+CGG | - | chr6.3:83703992-83704011 | MS.gene75054:intron | 40.0% |
! | TGTAGATCTACTAGGGTGTT+AGG | - | chr6.3:83703987-83704006 | MS.gene75054:intron | 40.0% |
! | TTCATAAGTTGCTGGCTGTT+TGG | + | chr6.3:83705130-83705149 | None:intergenic | 40.0% |
!! | CTGATCTCCTTGATAGCTTT+TGG | + | chr6.3:83705606-83705625 | None:intergenic | 40.0% |
!!! | TTTTGGTGCCTTCTTCTTGA+AGG | + | chr6.3:83705589-83705608 | None:intergenic | 40.0% |
AAGCTCCTGTTGGACTGTTT+GGG | - | chr6.3:83704050-83704069 | MS.gene75054:intron | 45.0% | |
AGCAGGTAGAAAAGAAGAGG+TGG | - | chr6.3:83703056-83703075 | MS.gene75054:CDS | 45.0% | |
AGCTAAGGGCCTGTTTAGAT+TGG | - | chr6.3:83703425-83703444 | MS.gene75054:intron | 45.0% | |
GAATGACGACGAAGATGCAA+AGG | - | chr6.3:83705752-83705771 | MS.gene75054:intron | 45.0% | |
TAAGCTCCTGTTGGACTGTT+TGG | - | chr6.3:83704049-83704068 | MS.gene75054:intron | 45.0% | |
TCAAGCTGAACAAGGCTATC+TGG | - | chr6.3:83705673-83705692 | MS.gene75054:intron | 45.0% | |
TGCAGCAGGTAGAAAAGAAG+AGG | - | chr6.3:83703053-83703072 | MS.gene75054:CDS | 45.0% | |
! | TCGCACTGTTTTGTGTGTTG+TGG | - | chr6.3:83705288-83705307 | MS.gene75054:intron | 45.0% |
!! | GAAGGCACCAAAAGCTATCA+AGG | - | chr6.3:83705596-83705615 | MS.gene75054:intron | 45.0% |
!! | TTAATTAAAATTAAAATCAT+GGG | + | chr6.3:83703254-83703273 | None:intergenic | 5.0% |
!! | TTTAATTAAAATTAAAATCA+TGG | + | chr6.3:83703255-83703274 | None:intergenic | 5.0% |
AAGTGTCCCAAGGAGGATCA+GGG | - | chr6.3:83705710-83705729 | MS.gene75054:intron | 50.0% | |
AATCTCCACAAGCGTCTCCA+TGG | - | chr6.3:83703099-83703118 | MS.gene75054:CDS | 50.0% | |
AGCGACTCTTGGAGAGCTTA+TGG | - | chr6.3:83704830-83704849 | MS.gene75054:intron | 50.0% | |
GAGACGCTTGTGGAGATTGA+TGG | + | chr6.3:83703097-83703116 | None:intergenic | 50.0% | |
TTGGGACACTTCTGATTCCC+TGG | + | chr6.3:83705701-83705720 | None:intergenic | 50.0% | |
! | AACAAGGCTATCTGGAGCCA+GGG | - | chr6.3:83705681-83705700 | MS.gene75054:intron | 50.0% |
! | CTAGGGTGTTAGGATCGGTT+TGG | - | chr6.3:83703997-83704016 | MS.gene75054:intron | 50.0% |
!! | AGGGAATCAGAAGTGTCCCA+AGG | - | chr6.3:83705700-83705719 | MS.gene75054:intron | 50.0% |
!! | GAATCAGAAGTGTCCCAAGG+AGG | - | chr6.3:83705703-83705722 | MS.gene75054:intron | 50.0% |
ACCATCCATGGAGACGCTTG+TGG | + | chr6.3:83703107-83703126 | None:intergenic | 55.0% | |
ATGCGTACCCTGATCCTCCT+TGG | + | chr6.3:83705720-83705739 | None:intergenic | 55.0% | |
GGTCTCCCAAACAGTCCAAC+AGG | + | chr6.3:83704058-83704077 | None:intergenic | 55.0% | |
TCCACAAGCGTCTCCATGGA+TGG | - | chr6.3:83703103-83703122 | MS.gene75054:CDS | 55.0% | |
TGCGTACCCTGATCCTCCTT+GGG | + | chr6.3:83705719-83705738 | None:intergenic | 55.0% | |
! | GAACAAGGCTATCTGGAGCC+AGG | - | chr6.3:83705680-83705699 | MS.gene75054:intron | 55.0% |
! | GAAGTGTCCCAAGGAGGATC+AGG | - | chr6.3:83705709-83705728 | MS.gene75054:intron | 55.0% |
GGGTACGCATTGCTCGCAAG+AGG | - | chr6.3:83705730-83705749 | MS.gene75054:intron | 60.0% | |
! | ATGGTGGAGAAGGGTGCAGC+AGG | - | chr6.3:83703039-83703058 | MS.gene75054:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 83703039 | 83705863 | 83703039 | ID=MS.gene75054 |
chr6.3 | mRNA | 83703039 | 83705863 | 83703039 | ID=MS.gene75054.t1;Parent=MS.gene75054 |
chr6.3 | exon | 83705778 | 83705863 | 83705778 | ID=MS.gene75054.t1.exon1;Parent=MS.gene75054.t1 |
chr6.3 | CDS | 83705778 | 83705863 | 83705778 | ID=cds.MS.gene75054.t1;Parent=MS.gene75054.t1 |
chr6.3 | exon | 83703039 | 83703318 | 83703039 | ID=MS.gene75054.t1.exon2;Parent=MS.gene75054.t1 |
chr6.3 | CDS | 83703039 | 83703318 | 83703039 | ID=cds.MS.gene75054.t1;Parent=MS.gene75054.t1 |
Gene Sequence |
Protein sequence |