Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66352.t1 | XP_024642002.1 | 99.2 | 121 | 1 | 0 | 1 | 121 | 1 | 121 | 6.50E-59 | 236.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66352.t1 | Q9M573 | 86.0 | 121 | 17 | 0 | 1 | 121 | 1 | 121 | 1.3e-52 | 206.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66352.t1 | G7KIQ1 | 99.2 | 121 | 1 | 0 | 1 | 121 | 1 | 121 | 4.7e-59 | 236.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene029547 | MS.gene66352 | PPI |
MS.gene023381 | MS.gene66352 | PPI |
MS.gene20153 | MS.gene66352 | PPI |
MS.gene08260 | MS.gene66352 | PPI |
MS.gene57660 | MS.gene66352 | PPI |
MS.gene049030 | MS.gene66352 | PPI |
MS.gene006800 | MS.gene66352 | PPI |
MS.gene66352 | MS.gene96780 | PPI |
MS.gene065652 | MS.gene66352 | PPI |
MS.gene06169 | MS.gene66352 | PPI |
MS.gene66352 | MS.gene064028 | PPI |
MS.gene66352 | MS.gene030304 | PPI |
MS.gene66352 | MS.gene75054 | PPI |
MS.gene068781 | MS.gene66352 | PPI |
MS.gene073324 | MS.gene66352 | PPI |
MS.gene66352 | MS.gene09046 | PPI |
MS.gene053790 | MS.gene66352 | PPI |
MS.gene012331 | MS.gene66352 | PPI |
MS.gene55890 | MS.gene66352 | PPI |
MS.gene96312 | MS.gene66352 | PPI |
MS.gene66352 | MS.gene031406 | PPI |
MS.gene66352 | MS.gene56525 | PPI |
MS.gene66352 | MS.gene99599 | PPI |
MS.gene66352 | MS.gene08259 | PPI |
MS.gene66352 | MS.gene031484 | PPI |
MS.gene09188 | MS.gene66352 | PPI |
MS.gene065189 | MS.gene66352 | PPI |
MS.gene92970 | MS.gene66352 | PPI |
MS.gene09187 | MS.gene66352 | PPI |
MS.gene012333 | MS.gene66352 | PPI |
MS.gene059846 | MS.gene66352 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66352.t1 | MTR_6g091630 | 99.174 | 121 | 1 | 0 | 1 | 121 | 1 | 121 | 1.12e-84 | 243 |
MS.gene66352.t1 | MTR_8g101980 | 96.694 | 121 | 4 | 0 | 1 | 121 | 1 | 121 | 1.18e-82 | 237 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66352.t1 | AT5G56710 | 83.333 | 114 | 19 | 0 | 8 | 121 | 6 | 119 | 5.97e-67 | 197 |
MS.gene66352.t1 | AT4G26230 | 84.211 | 114 | 18 | 0 | 8 | 121 | 6 | 119 | 7.43e-67 | 197 |
MS.gene66352.t1 | AT2G19740 | 80.833 | 120 | 22 | 1 | 2 | 121 | 1 | 119 | 7.12e-66 | 195 |
MS.gene66352.t1 | AT5G56710 | 57.895 | 114 | 14 | 1 | 8 | 121 | 6 | 85 | 1.15e-37 | 122 |
Find 38 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATCTCCTTGATAGCTTT+TGG | 0.199036 | 6.4:+63068072 | None:intergenic |
ATTCCTAAAGAAGAGTTAAA+AGG | 0.277484 | 6.4:-63067868 | MS.gene66352:CDS |
TAAAGAAGAGTTAAAAGGTT+TGG | 0.305277 | 6.4:-63067863 | MS.gene66352:CDS |
TCAAGCTGAACAAGGCTATC+TGG | 0.323250 | 6.4:-63068002 | MS.gene66352:CDS |
AAAGAAGAGTTAAAAGGTTT+GGG | 0.335880 | 6.4:-63067862 | MS.gene66352:CDS |
GATCAGAAAATTTGCTCAAA+AGG | 0.384063 | 6.4:-63068055 | MS.gene66352:CDS |
TTGGGACACTTCTGATTCCC+TGG | 0.397200 | 6.4:+63067977 | None:intergenic |
GAAGTGTCCCAAGGAGGATC+AGG | 0.403517 | 6.4:-63067966 | MS.gene66352:CDS |
GTCTTCATCATCGATGATCT+TGG | 0.459511 | 6.4:+63067837 | None:intergenic |
ATGCGTACCCTGATCCTCCT+TGG | 0.463330 | 6.4:+63067958 | None:intergenic |
AAGATTGAAATTACCATCCA+TGG | 0.468912 | 6.4:+63070053 | None:intergenic |
GAAGGCACCAAAAGCTATCA+AGG | 0.472855 | 6.4:-63068079 | MS.gene66352:CDS |
TGCGTACCCTGATCCTCCTT+GGG | 0.477887 | 6.4:+63067959 | None:intergenic |
GAACAAGGCTATCTGGAGCC+AGG | 0.480113 | 6.4:-63067995 | MS.gene66352:CDS |
ATGGTGGAGAAGGGTGCAGC+AGG | 0.507040 | 6.4:-63070130 | MS.gene66352:CDS |
GAGACGCTTGTGGAGATTGA+TGG | 0.526766 | 6.4:+63070075 | None:intergenic |
GAAGCTGAAAATGGTGGAGA+AGG | 0.536786 | 6.4:-63070140 | None:intergenic |
AAACAGCACCTTCAAGAAGA+AGG | 0.555549 | 6.4:-63068097 | MS.gene66352:intron |
AATCTCCACAAGCGTCTCCA+TGG | 0.563199 | 6.4:-63070070 | MS.gene66352:CDS |
TCCACAAGCGTCTCCATGGA+TGG | 0.567901 | 6.4:-63070066 | MS.gene66352:intron |
TGCAGCAGGTAGAAAAGAAG+AGG | 0.581022 | 6.4:-63070116 | MS.gene66352:CDS |
TCTAACATCGTTAGTACCCA+TGG | 0.582220 | 6.4:+63068032 | None:intergenic |
AAAATTTGCTCAAAAGGCCA+TGG | 0.583183 | 6.4:-63068049 | MS.gene66352:CDS |
AAAAGAAGAGGTGGTTACAC+GGG | 0.584738 | 6.4:-63070104 | MS.gene66352:CDS |
GAAAAGAAGAGGTGGTTACA+CGG | 0.586191 | 6.4:-63070105 | MS.gene66352:CDS |
ACCATCCATGGAGACGCTTG+TGG | 0.589153 | 6.4:+63070065 | None:intergenic |
GAATTTCAACGACAGTGACA+AGG | 0.604839 | 6.4:+63067887 | None:intergenic |
AAGCTGAAAATGGTGGAGAA+GGG | 0.607163 | 6.4:-63070139 | None:intergenic |
AACAAGGCTATCTGGAGCCA+GGG | 0.614836 | 6.4:-63067994 | MS.gene66352:CDS |
GAATGACGACGAAGATGCAA+AGG | 0.619084 | 6.4:-63067923 | MS.gene66352:CDS |
AAGTGTCCCAAGGAGGATCA+GGG | 0.621071 | 6.4:-63067965 | MS.gene66352:CDS |
AAATTTGCTCAAAAGGCCAT+GGG | 0.623564 | 6.4:-63068048 | MS.gene66352:CDS |
AGTTGATGTCAAGCTGAACA+AGG | 0.626602 | 6.4:-63068010 | MS.gene66352:CDS |
AGCAGGTAGAAAAGAAGAGG+TGG | 0.632837 | 6.4:-63070113 | MS.gene66352:CDS |
AGGGAATCAGAAGTGTCCCA+AGG | 0.639457 | 6.4:-63067975 | MS.gene66352:CDS |
AATTTCAACGACAGTGACAA+GGG | 0.644182 | 6.4:+63067888 | None:intergenic |
GGGTACGCATTGCTCGCAAG+AGG | 0.652748 | 6.4:-63067945 | MS.gene66352:CDS |
GAATCAGAAGTGTCCCAAGG+AGG | 0.720888 | 6.4:-63067972 | MS.gene66352:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTATAAGTGTTAATTAA+CGG | - | chr6.4:63068256-63068275 | MS.gene66352:intron | 10.0% |
!!! | ATAATCTTTTAAAGAATTAT+GGG | + | chr6.4:63068338-63068357 | None:intergenic | 10.0% |
!!! | TATAATCTTTTAAAGAATTA+TGG | + | chr6.4:63068339-63068358 | None:intergenic | 10.0% |
!! | TTATGTAACACAATAATTAT+GGG | + | chr6.4:63068563-63068582 | None:intergenic | 15.0% |
!!! | TGTTTTAAAAAAAAACATCA+TGG | + | chr6.4:63068936-63068955 | None:intergenic | 15.0% |
!! | AAATGAACAGCATATATTTA+GGG | + | chr6.4:63069530-63069549 | None:intergenic | 20.0% |
!! | ATTAAACTGTTAATCAAAAC+AGG | + | chr6.4:63069052-63069071 | None:intergenic | 20.0% |
!! | CTATTCATGATTTGAAAAAT+CGG | - | chr6.4:63069659-63069678 | MS.gene66352:intron | 20.0% |
!! | CTTATGTAACACAATAATTA+TGG | + | chr6.4:63068564-63068583 | None:intergenic | 20.0% |
!! | TACTAATTTCTGTTTATGTT+TGG | - | chr6.4:63069825-63069844 | MS.gene66352:intron | 20.0% |
!! | TATGTAACACAATAATTATG+GGG | + | chr6.4:63068562-63068581 | None:intergenic | 20.0% |
!! | TTAAACTGTTAATCAAAACA+GGG | + | chr6.4:63069051-63069070 | None:intergenic | 20.0% |
!! | TTGATATTCATATTGTGAAT+TGG | + | chr6.4:63069689-63069708 | None:intergenic | 20.0% |
!!! | TAAGCTATTTCTATTTCAAA+AGG | - | chr6.4:63068402-63068421 | MS.gene66352:intron | 20.0% |
! | AAAGAAGAGTTAAAAGGTTT+GGG | - | chr6.4:63070102-63070121 | MS.gene66352:CDS | 25.0% |
! | ACTAAGTTATTTATCCATAC+AGG | + | chr6.4:63068096-63068115 | None:intergenic | 25.0% |
! | ATGAATTCAAAAACAGCTTA+TGG | + | chr6.4:63069421-63069440 | None:intergenic | 25.0% |
! | ATGTAACACAATAATTATGG+GGG | + | chr6.4:63068561-63068580 | None:intergenic | 25.0% |
! | ATTCCTAAAGAAGAGTTAAA+AGG | - | chr6.4:63070096-63070115 | MS.gene66352:CDS | 25.0% |
! | CAAATGAACAGCATATATTT+AGG | + | chr6.4:63069531-63069550 | None:intergenic | 25.0% |
! | CTAAATATATGCTGTTCATT+TGG | - | chr6.4:63069529-63069548 | MS.gene66352:intron | 25.0% |
! | CTAAGTTATTTATCCATACA+GGG | + | chr6.4:63068095-63068114 | None:intergenic | 25.0% |
! | GTGAGTAAATTAATAGTTTG+TGG | - | chr6.4:63069551-63069570 | MS.gene66352:intron | 25.0% |
! | TAAAATAAGCCAATCTAAAC+AGG | + | chr6.4:63068232-63068251 | None:intergenic | 25.0% |
! | TAAAGAAGAGTTAAAAGGTT+TGG | - | chr6.4:63070101-63070120 | MS.gene66352:CDS | 25.0% |
! | TATGAAAATAAGCTGAATAC+AGG | + | chr6.4:63068907-63068926 | None:intergenic | 25.0% |
! | TTATTTGCATCTAATCCAAA+TGG | - | chr6.4:63068312-63068331 | MS.gene66352:intron | 25.0% |
! | TTTCATGATCTAACTACATT+AGG | - | chr6.4:63069025-63069044 | MS.gene66352:intron | 25.0% |
!! | AGTGATGAAATTGATGATTA+TGG | + | chr6.4:63068994-63069013 | None:intergenic | 25.0% |
!! | CTCAAATAAGCTATTTCAAA+AGG | - | chr6.4:63069263-63069282 | MS.gene66352:intron | 25.0% |
!! | TACACTGTGTTAGATAATTT+TGG | - | chr6.4:63068455-63068474 | MS.gene66352:intron | 25.0% |
!! | TCAATTTTGTAGATCTACTA+GGG | - | chr6.4:63068776-63068795 | MS.gene66352:intron | 25.0% |
!! | TGGATTAGATGCAAATAAAT+AGG | + | chr6.4:63068310-63068329 | None:intergenic | 25.0% |
!! | TTCAATTTTGTAGATCTACT+AGG | - | chr6.4:63068775-63068794 | MS.gene66352:intron | 25.0% |
!!! | AAACCTTTTAACTCTTCTTT+AGG | + | chr6.4:63070102-63070121 | None:intergenic | 25.0% |
!!! | TCCTGTAATATTGTTTTAGT+TGG | - | chr6.4:63068749-63068768 | MS.gene66352:intron | 25.0% |
!!! | TGAGATCAAGTTATTTTTTG+TGG | - | chr6.4:63069731-63069750 | MS.gene66352:intron | 25.0% |
!!! | TGTGGTTTTAATATGAATTG+AGG | - | chr6.4:63069569-63069588 | MS.gene66352:intron | 25.0% |
AAGATTGAAATTACCATCCA+TGG | + | chr6.4:63067914-63067933 | None:intergenic | 30.0% | |
ATTCTCTAATGGCATAACAT+TGG | + | chr6.4:63069243-63069262 | None:intergenic | 30.0% | |
GAAATAAGCTGAAACAACTT+AGG | - | chr6.4:63069176-63069195 | MS.gene66352:intron | 30.0% | |
GCCAACTAAAACAATATTAC+AGG | + | chr6.4:63068753-63068772 | None:intergenic | 30.0% | |
GCTATGTGTAATTGCATAAT+TGG | - | chr6.4:63069763-63069782 | MS.gene66352:intron | 30.0% | |
TGTCATCAACTGTTTCAATA+AGG | + | chr6.4:63068875-63068894 | None:intergenic | 30.0% | |
TTAAAGAATTATGGGCCATT+TGG | + | chr6.4:63068330-63068349 | None:intergenic | 30.0% | |
! | GATCAGAAAATTTGCTCAAA+AGG | - | chr6.4:63069909-63069928 | MS.gene66352:intron | 30.0% |
! | GCATATATTTAGGGTTTGTT+TGG | + | chr6.4:63069521-63069540 | None:intergenic | 30.0% |
! | GCTTATTTGAGATTCTCTAA+TGG | + | chr6.4:63069254-63069273 | None:intergenic | 30.0% |
! | TATTTAGGGTTTGTTTGGAT+AGG | + | chr6.4:63069516-63069535 | None:intergenic | 30.0% |
! | TCAGTTTTCTGTGTTTACAT+TGG | - | chr6.4:63068695-63068714 | MS.gene66352:intron | 30.0% |
!! | CGTTTCAAATTTGTTGATCT+AGG | - | chr6.4:63068584-63068603 | MS.gene66352:intron | 30.0% |
!! | TAATATGAATTGAGGTGTTG+TGG | - | chr6.4:63069577-63069596 | MS.gene66352:intron | 30.0% |
!!! | TGTTTTTTATAAGCGACTCT+TGG | - | chr6.4:63069143-63069162 | MS.gene66352:intron | 30.0% |
AACACAATAATTATGGGGGA+AGG | + | chr6.4:63068557-63068576 | None:intergenic | 35.0% | |
AATTTCAACGACAGTGACAA+GGG | + | chr6.4:63070079-63070098 | None:intergenic | 35.0% | |
TGTCATTGTTCATAAGTTGC+TGG | + | chr6.4:63069462-63069481 | None:intergenic | 35.0% | |
! | AAAATTTGCTCAAAAGGCCA+TGG | - | chr6.4:63069915-63069934 | MS.gene66352:intron | 35.0% |
! | AAATTTGCTCAAAAGGCCAT+GGG | - | chr6.4:63069916-63069935 | MS.gene66352:intron | 35.0% |
AAAAGAAGAGGTGGTTACAC+GGG | - | chr6.4:63067860-63067879 | MS.gene66352:CDS | 40.0% | |
AAACAGCACCTTCAAGAAGA+AGG | - | chr6.4:63069867-63069886 | MS.gene66352:intron | 40.0% | |
AGCTAAGTGCCTGTTTAGAT+TGG | - | chr6.4:63068220-63068239 | MS.gene66352:intron | 40.0% | |
CTATAGATCTAGACCCTGTA+TGG | - | chr6.4:63068079-63068098 | MS.gene66352:CDS | 40.0% | |
CTATTTGCATAAGCTCCTGT+TGG | - | chr6.4:63068836-63068855 | MS.gene66352:intron | 40.0% | |
GAAAAGAAGAGGTGGTTACA+CGG | - | chr6.4:63067859-63067878 | MS.gene66352:CDS | 40.0% | |
GAATTTCAACGACAGTGACA+AGG | + | chr6.4:63070080-63070099 | None:intergenic | 40.0% | |
GTCTTCATCATCGATGATCT+TGG | + | chr6.4:63070130-63070149 | None:intergenic | 40.0% | |
TCTAACATCGTTAGTACCCA+TGG | + | chr6.4:63069935-63069954 | None:intergenic | 40.0% | |
! | AGTTGATGTCAAGCTGAACA+AGG | - | chr6.4:63069954-63069973 | MS.gene66352:intron | 40.0% |
! | ATCTACTAGGGTGTTAGGAT+CGG | - | chr6.4:63068788-63068807 | MS.gene66352:intron | 40.0% |
! | TGTAGATCTACTAGGGTGTT+AGG | - | chr6.4:63068783-63068802 | MS.gene66352:intron | 40.0% |
! | TTCATAAGTTGCTGGCTGTT+TGG | + | chr6.4:63069454-63069473 | None:intergenic | 40.0% |
!! | CTGATCTCCTTGATAGCTTT+TGG | + | chr6.4:63069895-63069914 | None:intergenic | 40.0% |
!!! | TTTTGGTGCCTTCTTCTTGA+AGG | + | chr6.4:63069878-63069897 | None:intergenic | 40.0% |
AAGCTCCTGTTGGACTGTTT+GGG | - | chr6.4:63068846-63068865 | MS.gene66352:intron | 45.0% | |
AGCAGGTAGAAAAGAAGAGG+TGG | - | chr6.4:63067851-63067870 | MS.gene66352:CDS | 45.0% | |
GAATGACGACGAAGATGCAA+AGG | - | chr6.4:63070041-63070060 | MS.gene66352:intron | 45.0% | |
TAAGCTCCTGTTGGACTGTT+TGG | - | chr6.4:63068845-63068864 | MS.gene66352:intron | 45.0% | |
TCAAGCTGAACAAGGCTATC+TGG | - | chr6.4:63069962-63069981 | MS.gene66352:intron | 45.0% | |
TGCAGCAGGTAGAAAAGAAG+AGG | - | chr6.4:63067848-63067867 | MS.gene66352:CDS | 45.0% | |
!! | GAAGGCACCAAAAGCTATCA+AGG | - | chr6.4:63069885-63069904 | MS.gene66352:intron | 45.0% |
!! | TTAATTAAAATTAAAATCAT+GGG | + | chr6.4:63068049-63068068 | None:intergenic | 5.0% |
!! | TTTAATTAAAATTAAAATCA+TGG | + | chr6.4:63068050-63068069 | None:intergenic | 5.0% |
AAGTGTCCCAAGGAGGATCA+GGG | - | chr6.4:63069999-63070018 | MS.gene66352:intron | 50.0% | |
AATCTCCACAAGCGTCTCCA+TGG | - | chr6.4:63067894-63067913 | MS.gene66352:CDS | 50.0% | |
AGCGACTCTTGGAGAGCTTA+TGG | - | chr6.4:63069154-63069173 | MS.gene66352:intron | 50.0% | |
GAGACGCTTGTGGAGATTGA+TGG | + | chr6.4:63067892-63067911 | None:intergenic | 50.0% | |
TTGGGACACTTCTGATTCCC+TGG | + | chr6.4:63069990-63070009 | None:intergenic | 50.0% | |
! | AACAAGGCTATCTGGAGCCA+GGG | - | chr6.4:63069970-63069989 | MS.gene66352:intron | 50.0% |
! | CTAGGGTGTTAGGATCGGTT+TGG | - | chr6.4:63068793-63068812 | MS.gene66352:intron | 50.0% |
!! | AGGGAATCAGAAGTGTCCCA+AGG | - | chr6.4:63069989-63070008 | MS.gene66352:intron | 50.0% |
!! | GAATCAGAAGTGTCCCAAGG+AGG | - | chr6.4:63069992-63070011 | MS.gene66352:intron | 50.0% |
ACCATCCATGGAGACGCTTG+TGG | + | chr6.4:63067902-63067921 | None:intergenic | 55.0% | |
ATGCGTACCCTGATCCTCCT+TGG | + | chr6.4:63070009-63070028 | None:intergenic | 55.0% | |
GGTCTCCCAAACAGTCCAAC+AGG | + | chr6.4:63068854-63068873 | None:intergenic | 55.0% | |
TCCACAAGCGTCTCCATGGA+TGG | - | chr6.4:63067898-63067917 | MS.gene66352:CDS | 55.0% | |
TGCGTACCCTGATCCTCCTT+GGG | + | chr6.4:63070008-63070027 | None:intergenic | 55.0% | |
! | GAACAAGGCTATCTGGAGCC+AGG | - | chr6.4:63069969-63069988 | MS.gene66352:intron | 55.0% |
! | GAAGTGTCCCAAGGAGGATC+AGG | - | chr6.4:63069998-63070017 | MS.gene66352:intron | 55.0% |
GGGTACGCATTGCTCGCAAG+AGG | - | chr6.4:63070019-63070038 | MS.gene66352:intron | 60.0% | |
! | ATGGTGGAGAAGGGTGCAGC+AGG | - | chr6.4:63067834-63067853 | MS.gene66352:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 63067834 | 63070152 | 63067834 | ID=MS.gene66352 |
chr6.4 | mRNA | 63067834 | 63070152 | 63067834 | ID=MS.gene66352.t1;Parent=MS.gene66352 |
chr6.4 | exon | 63070067 | 63070152 | 63070067 | ID=MS.gene66352.t1.exon1;Parent=MS.gene66352.t1 |
chr6.4 | CDS | 63070067 | 63070152 | 63070067 | ID=cds.MS.gene66352.t1;Parent=MS.gene66352.t1 |
chr6.4 | exon | 63067834 | 63068113 | 63067834 | ID=MS.gene66352.t1.exon2;Parent=MS.gene66352.t1 |
chr6.4 | CDS | 63067834 | 63068113 | 63067834 | ID=cds.MS.gene66352.t1;Parent=MS.gene66352.t1 |
Gene Sequence |
Protein sequence |