Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96312.t1 | GAU24300.1 | 85.7 | 210 | 28 | 1 | 1 | 210 | 35 | 242 | 5.60E-98 | 367.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96312.t1 | O74978 | 43.2 | 155 | 88 | 0 | 38 | 192 | 92 | 246 | 5.4e-33 | 142.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96312.t1 | A0A2Z6ML98 | 85.7 | 210 | 28 | 1 | 1 | 210 | 35 | 242 | 4.0e-98 | 367.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96312.t1 | MTR_4g127330 | 93.855 | 179 | 11 | 0 | 1 | 179 | 1 | 179 | 1.28e-124 | 350 |
| MS.gene96312.t1 | MTR_1g108290 | 87.692 | 195 | 22 | 1 | 16 | 210 | 20 | 212 | 1.06e-117 | 333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96312.t1 | AT5G04600 | 61.780 | 191 | 72 | 1 | 20 | 209 | 28 | 218 | 1.78e-90 | 265 |
Find 39 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCAAACTTTATCTTCTT+TGG | 0.169940 | 8.3:+3724086 | None:intergenic |
| ACTGGAAAATCAAGACATTT+TGG | 0.197189 | 8.3:-3725467 | MS.gene96312:CDS |
| CTTCAAACTTTATCTTCTTT+GGG | 0.255206 | 8.3:+3724087 | None:intergenic |
| GGCAATTCTCAATCTCTTAA+TGG | 0.261298 | 8.3:+3725502 | None:intergenic |
| CATGTCGTTCCCGTTCAATT+TGG | 0.309401 | 8.3:+3724432 | None:intergenic |
| CAGCCGTTGGATTGTGGTCC+TGG | 0.355366 | 8.3:-3725706 | MS.gene96312:CDS |
| GTGCATGGCTTTCTTTGCCT+TGG | 0.362218 | 8.3:+3725875 | None:intergenic |
| AACTTTATCTTCTTTGGGGC+AGG | 0.405333 | 8.3:+3724092 | None:intergenic |
| ATGCGAGCAATGTACAGAAC+AGG | 0.435394 | 8.3:+3725643 | None:intergenic |
| TTATCTTCTTTGGGGCAGGC+TGG | 0.440545 | 8.3:+3724096 | None:intergenic |
| CAATTATCGTTACAAGCCTC+TGG | 0.449754 | 8.3:-3724462 | MS.gene96312:CDS |
| TAATTAGTAACTTACAAATT+GGG | 0.454040 | 8.3:+3725329 | None:intergenic |
| GGACTCTCTCCAAATTGAAC+GGG | 0.463008 | 8.3:-3724441 | MS.gene96312:CDS |
| GCAGCAGCAGCAGGGTGAGA+TGG | 0.504318 | 8.3:+3725825 | None:intergenic |
| ATTTAAGTTCAGGAAGTTTG+CGG | 0.507275 | 8.3:+3725683 | None:intergenic |
| TACATTGCTCGCATTCCACA+CGG | 0.516540 | 8.3:-3725634 | MS.gene96312:CDS |
| TTGTCTCAGCCGTTGGATTG+TGG | 0.523207 | 8.3:-3725712 | MS.gene96312:intron |
| TCTTCTTTGGGGCAGGCTGG+AGG | 0.525567 | 8.3:+3724099 | None:intergenic |
| ACTTCCTGAACTTAAATCCC+TGG | 0.525683 | 8.3:-3725677 | MS.gene96312:CDS |
| AGTTCAGGAAGTTTGCGGCC+AGG | 0.544607 | 8.3:+3725688 | None:intergenic |
| TTAAGAGATTGAGAATTGCC+AGG | 0.546505 | 8.3:-3725499 | MS.gene96312:CDS |
| AAAACGTCGGAAAATGATAG+AGG | 0.547339 | 8.3:-3724252 | MS.gene96312:CDS |
| CGGAAAATGATAGAGGCTGC+TGG | 0.549291 | 8.3:-3724245 | MS.gene96312:CDS |
| GTCGTTTCAGGAAAGAACAT+TGG | 0.550223 | 8.3:-3724318 | MS.gene96312:intron |
| CCATGCACAAGAGTTTGAAA+AGG | 0.560682 | 8.3:-3725860 | MS.gene96312:CDS |
| TCCACACGGGTTCTACGAGA+TGG | 0.570256 | 8.3:-3725620 | MS.gene96312:CDS |
| CATAGAATTTGAATCTCCTG+AGG | 0.575091 | 8.3:-3725441 | MS.gene96312:CDS |
| GAGCATTGAGATGGGGACCA+AGG | 0.576294 | 8.3:-3725892 | None:intergenic |
| TGGACTCTCTCCAAATTGAA+CGG | 0.577893 | 8.3:-3724442 | MS.gene96312:CDS |
| CGGGTTCTACGAGATGGAGA+TGG | 0.590555 | 8.3:-3725614 | MS.gene96312:CDS |
| TTCAAACTTTATCTTCTTTG+GGG | 0.596652 | 8.3:+3724088 | None:intergenic |
| TGCGAGCAATGTACAGAACA+GGG | 0.622218 | 8.3:+3725644 | None:intergenic |
| CGGCCAGGACCACAATCCAA+CGG | 0.630149 | 8.3:+3725703 | None:intergenic |
| TGAACGGGAACGACATGACA+AGG | 0.640978 | 8.3:-3724426 | MS.gene96312:intron |
| ACATTGCTCGCATTCCACAC+GGG | 0.659129 | 8.3:-3725633 | MS.gene96312:CDS |
| TTCTACGAGATGGAGATGGA+TGG | 0.665561 | 8.3:-3725610 | MS.gene96312:intron |
| TCCATCTCGTAGAACCCGTG+TGG | 0.670939 | 8.3:+3725619 | None:intergenic |
| TCAATTTGGAGAGAGTCCAG+AGG | 0.681598 | 8.3:+3724446 | None:intergenic |
| GCGAGCAATGTACAGAACAG+GGG | 0.718926 | 8.3:+3725645 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACATAATTGTAAAACAA+TGG | - | chr8.3:3725329-3725348 | MS.gene96312:intron | 15.0% |
| !! | ATAATCATAAAGATGTTTAT+CGG | + | chr8.3:3724869-3724888 | None:intergenic | 15.0% |
| !! | ATATGTGTTTATCAATTTAT+TGG | - | chr8.3:3724409-3724428 | MS.gene96312:intron | 15.0% |
| !! | TAATTAGTAACTTACAAATT+GGG | + | chr8.3:3724638-3724657 | None:intergenic | 15.0% |
| !! | TTTAACTAGAATTATTTGAA+AGG | - | chr8.3:3724800-3724819 | MS.gene96312:intron | 15.0% |
| !!! | AAAAATCTCTCATTTATTTT+GGG | + | chr8.3:3724973-3724992 | None:intergenic | 15.0% |
| !!! | AGAAACAAATTTTTAAACAT+AGG | + | chr8.3:3725417-3725436 | None:intergenic | 15.0% |
| !!! | TAAAAATCTCTCATTTATTT+TGG | + | chr8.3:3724974-3724993 | None:intergenic | 15.0% |
| !! | AAAATAAGAAATTCTATTGG+AGG | - | chr8.3:3724754-3724773 | MS.gene96312:intron | 20.0% |
| !! | ATGTACAGTATATCATTATA+TGG | + | chr8.3:3725290-3725309 | None:intergenic | 20.0% |
| !! | GAGAAAATAAGAAATTCTAT+TGG | - | chr8.3:3724751-3724770 | MS.gene96312:intron | 20.0% |
| !! | GATAAACATCTTTATGATTA+TGG | - | chr8.3:3724868-3724887 | MS.gene96312:intron | 20.0% |
| !! | GTAATTAGTAACTTACAAAT+TGG | + | chr8.3:3724639-3724658 | None:intergenic | 20.0% |
| !! | TTACTAATTACTTCATTTGT+AGG | - | chr8.3:3724648-3724667 | MS.gene96312:intron | 20.0% |
| !!! | GTTTTACAATTATGTTATGT+TGG | + | chr8.3:3725327-3725346 | None:intergenic | 20.0% |
| ! | ACAACTAATCAGTAAAAGAA+AGG | + | chr8.3:3725783-3725802 | None:intergenic | 25.0% |
| ! | ACTTCAAACTTTATCTTCTT+TGG | + | chr8.3:3725881-3725900 | None:intergenic | 25.0% |
| ! | CTAGAATTATTTGAAAGGAA+AGG | - | chr8.3:3724805-3724824 | MS.gene96312:intron | 25.0% |
| ! | CTTCAAACTTTATCTTCTTT+GGG | + | chr8.3:3725880-3725899 | None:intergenic | 25.0% |
| ! | TATCATATCTCACAATGTTA+AGG | - | chr8.3:3725039-3725058 | MS.gene96312:intron | 25.0% |
| ! | TATTCTTCTTCATGAAATTC+AGG | + | chr8.3:3725442-3725461 | None:intergenic | 25.0% |
| ! | TCAAAATGAATTTGAGCTAA+TGG | - | chr8.3:3725375-3725394 | MS.gene96312:CDS | 25.0% |
| ! | TTCAAACTTTATCTTCTTTG+GGG | + | chr8.3:3725879-3725898 | None:intergenic | 25.0% |
| ! | TTTGTTAGAAATCAGAATGA+AGG | - | chr8.3:3725202-3725221 | MS.gene96312:intron | 25.0% |
| !! | GTAAAGTTTTTCTTTGTAGA+TGG | - | chr8.3:3725471-3725490 | MS.gene96312:CDS | 25.0% |
| !! | TTTTGTATTTTGTGTTAGCA+TGG | - | chr8.3:3725587-3725606 | MS.gene96312:intron | 25.0% |
| !!! | TACAGTTTAAGTTTTTGTGA+AGG | - | chr8.3:3724385-3724404 | MS.gene96312:intron | 25.0% |
| AACAGCAATTAGACATAACA+TGG | + | chr8.3:3725833-3725852 | None:intergenic | 30.0% | |
| AATCAGTTGTTATGGAAAGA+AGG | - | chr8.3:3725257-3725276 | MS.gene96312:intron | 30.0% | |
| AGATACCATACTCTAATAGT+TGG | - | chr8.3:3725007-3725026 | MS.gene96312:intron | 30.0% | |
| AGGAAATTCTAATAGTTGGT+AGG | - | chr8.3:3725063-3725082 | MS.gene96312:intron | 30.0% | |
| AGGAAGGAAATTCTAATAGT+TGG | - | chr8.3:3725059-3725078 | MS.gene96312:intron | 30.0% | |
| ATATCTCACAATGTTAAGGA+AGG | - | chr8.3:3725043-3725062 | MS.gene96312:intron | 30.0% | |
| ATGTTTATCGGATATCTAGA+GGG | + | chr8.3:3724857-3724876 | None:intergenic | 30.0% | |
| ATTGGATGAACACAAAAAGT+TGG | - | chr8.3:3725664-3725683 | MS.gene96312:CDS | 30.0% | |
| CATGGTAAAAATTAGAGACA+TGG | + | chr8.3:3725815-3725834 | None:intergenic | 30.0% | |
| ! | ACTGGAAAATCAAGACATTT+TGG | - | chr8.3:3724497-3724516 | MS.gene96312:intron | 30.0% |
| ! | ATTTAAGTTCAGGAAGTTTG+CGG | + | chr8.3:3724284-3724303 | None:intergenic | 30.0% |
| ! | TTTTCCAGTCTTTTTATTCC+TGG | + | chr8.3:3724486-3724505 | None:intergenic | 30.0% |
| !! | TTGGTTTTTGCAGCTTATTT+TGG | - | chr8.3:3724428-3724447 | MS.gene96312:CDS | 30.0% |
| !!! | TCTCATTTATTTTGGGAGAA+GGG | + | chr8.3:3724966-3724985 | None:intergenic | 30.0% |
| AAAACGTCGGAAAATGATAG+AGG | - | chr8.3:3725712-3725731 | MS.gene96312:intron | 35.0% | |
| AAGATGTAAGAGGACATATC+TGG | - | chr8.3:3725165-3725184 | MS.gene96312:intron | 35.0% | |
| ACCATACTCTAATAGTTGGT+AGG | - | chr8.3:3725011-3725030 | MS.gene96312:intron | 35.0% | |
| AGGCAAAAAAGCTCACAATA+TGG | + | chr8.3:3725763-3725782 | None:intergenic | 35.0% | |
| ATTGCCAGGAATAAAAAGAC+TGG | - | chr8.3:3724479-3724498 | MS.gene96312:intron | 35.0% | |
| CATAGAATTTGAATCTCCTG+AGG | - | chr8.3:3724523-3724542 | MS.gene96312:intron | 35.0% | |
| CATATCTGGTCAATCAGTTT+AGG | - | chr8.3:3725179-3725198 | MS.gene96312:intron | 35.0% | |
| GATGTTTATCGGATATCTAG+AGG | + | chr8.3:3724858-3724877 | None:intergenic | 35.0% | |
| GCAAAAAAGCTCACAATATG+GGG | + | chr8.3:3725761-3725780 | None:intergenic | 35.0% | |
| GGCAAAAAAGCTCACAATAT+GGG | + | chr8.3:3725762-3725781 | None:intergenic | 35.0% | |
| GGCAATTCTCAATCTCTTAA+TGG | + | chr8.3:3724465-3724484 | None:intergenic | 35.0% | |
| TCCTACCAACTATTAGAGTA+TGG | + | chr8.3:3725015-3725034 | None:intergenic | 35.0% | |
| TGAAACGTGACAAAAAACGT+CGG | - | chr8.3:3725699-3725718 | MS.gene96312:CDS | 35.0% | |
| TTAAGAGATTGAGAATTGCC+AGG | - | chr8.3:3724465-3724484 | MS.gene96312:CDS | 35.0% | |
| ! | AACACAAAAAGTTGGTTGAC+AGG | - | chr8.3:3725672-3725691 | MS.gene96312:CDS | 35.0% |
| ! | ACAAGGTATTTAGTGTGATG+AGG | - | chr8.3:3725555-3725574 | MS.gene96312:intron | 35.0% |
| ! | ACACAAAAAGTTGGTTGACA+GGG | - | chr8.3:3725673-3725692 | MS.gene96312:CDS | 35.0% |
| ! | GTTTTTCTTTGTAGATGGAG+AGG | - | chr8.3:3725476-3725495 | MS.gene96312:CDS | 35.0% |
| ! | TTATGTCTAATTGCTGTTGC+AGG | - | chr8.3:3725835-3725854 | MS.gene96312:CDS | 35.0% |
| ! | TTCATTATTGCTGTCGTTTC+AGG | - | chr8.3:3725634-3725653 | MS.gene96312:CDS | 35.0% |
| !! | TTTTCCAGGGATTTAAGTTC+AGG | + | chr8.3:3724294-3724313 | None:intergenic | 35.0% |
| !!! | CTCTCATTTATTTTGGGAGA+AGG | + | chr8.3:3724967-3724986 | None:intergenic | 35.0% |
| !!! | GCAGCTTATTTTGGACAATT+CGG | - | chr8.3:3724437-3724456 | MS.gene96312:CDS | 35.0% |
| ACTTCCTGAACTTAAATCCC+TGG | - | chr8.3:3724287-3724306 | MS.gene96312:CDS | 40.0% | |
| ATTGGAGGATCAACAATCCT+TGG | - | chr8.3:3724769-3724788 | MS.gene96312:intron | 40.0% | |
| CAATTATCGTTACAAGCCTC+TGG | - | chr8.3:3725502-3725521 | MS.gene96312:CDS | 40.0% | |
| CCATGCACAAGAGTTTGAAA+AGG | - | chr8.3:3724104-3724123 | MS.gene96312:CDS | 40.0% | |
| CCTCTTACATCTTACACACA+AGG | + | chr8.3:3725158-3725177 | None:intergenic | 40.0% | |
| CCTTGTGTGTAAGATGTAAG+AGG | - | chr8.3:3725155-3725174 | MS.gene96312:intron | 40.0% | |
| CTACCACAAAAACCTGAAGA+AGG | + | chr8.3:3724598-3724617 | None:intergenic | 40.0% | |
| CTTACATCTTACACACAAGG+CGG | + | chr8.3:3725155-3725174 | None:intergenic | 40.0% | |
| GTCGTTTCAGGAAAGAACAT+TGG | - | chr8.3:3725646-3725665 | MS.gene96312:CDS | 40.0% | |
| TATCGGATATCTAGAGGGAT+AGG | + | chr8.3:3724852-3724871 | None:intergenic | 40.0% | |
| TGGACTCTCTCCAAATTGAA+CGG | - | chr8.3:3725522-3725541 | MS.gene96312:CDS | 40.0% | |
| TGTTATGGAAAGAAGGCTCA+AGG | - | chr8.3:3725264-3725283 | MS.gene96312:intron | 40.0% | |
| TTACATCTTACACACAAGGC+GGG | + | chr8.3:3725154-3725173 | None:intergenic | 40.0% | |
| TTGGAGGATCAACAATCCTT+GGG | - | chr8.3:3724770-3724789 | MS.gene96312:intron | 40.0% | |
| ! | CAAAAACCTGAAGAAGGTGT+TGG | + | chr8.3:3724592-3724611 | None:intergenic | 40.0% |
| ! | CCTTTTCAAACTCTTGTGCA+TGG | + | chr8.3:3724107-3724126 | None:intergenic | 40.0% |
| ! | GCAACAATTTTTGCAACCTC+AGG | + | chr8.3:3724542-3724561 | None:intergenic | 40.0% |
| !! | AACTTTATCTTCTTTGGGGC+AGG | + | chr8.3:3725875-3725894 | None:intergenic | 40.0% |
| !! | ACACCTTCTTCAGGTTTTTG+TGG | - | chr8.3:3724592-3724611 | MS.gene96312:intron | 40.0% |
| !!! | AACAGGGGAAGTATTTTCCA+GGG | + | chr8.3:3724307-3724326 | None:intergenic | 40.0% |
| !!! | TTCGGTCTTTTTCAGACATG+TGG | + | chr8.3:3725116-3725135 | None:intergenic | 40.0% |
| AAAAAATCAGCAGCAGCAGC+AGG | + | chr8.3:3724151-3724170 | None:intergenic | 45.0% | |
| AAAAATCAGCAGCAGCAGCA+GGG | + | chr8.3:3724150-3724169 | None:intergenic | 45.0% | |
| AGGATCAACAATCCTTGGGT+GGG | - | chr8.3:3724774-3724793 | MS.gene96312:intron | 45.0% | |
| ATGCGAGCAATGTACAGAAC+AGG | + | chr8.3:3724324-3724343 | None:intergenic | 45.0% | |
| CATGTCGTTCCCGTTCAATT+TGG | + | chr8.3:3725535-3725554 | None:intergenic | 45.0% | |
| CCATAACAACTGATTGCCGA+CGG | + | chr8.3:3725252-3725271 | None:intergenic | 45.0% | |
| GGACTCTCTCCAAATTGAAC+GGG | - | chr8.3:3725523-3725542 | MS.gene96312:CDS | 45.0% | |
| TACATTGCTCGCATTCCACA+CGG | - | chr8.3:3724330-3724349 | MS.gene96312:intron | 45.0% | |
| TCAATTTGGAGAGAGTCCAG+AGG | + | chr8.3:3725521-3725540 | None:intergenic | 45.0% | |
| TGCGAGCAATGTACAGAACA+GGG | + | chr8.3:3724323-3724342 | None:intergenic | 45.0% | |
| TTCTACGAGATGGAGATGGA+TGG | - | chr8.3:3724354-3724373 | MS.gene96312:intron | 45.0% | |
| ! | CAGACATGTGGTGGTGTATT+TGG | + | chr8.3:3725104-3725123 | None:intergenic | 45.0% |
| ! | GCTTTTCCAACACCTTCTTC+AGG | - | chr8.3:3724583-3724602 | MS.gene96312:intron | 45.0% |
| ! | GTCTAATTGCTGTTGCAGGT+GGG | - | chr8.3:3725839-3725858 | MS.gene96312:CDS | 45.0% |
| ! | TGTCTAATTGCTGTTGCAGG+TGG | - | chr8.3:3725838-3725857 | MS.gene96312:CDS | 45.0% |
| !! | GTTGATTTTGTCTCAGCCGT+TGG | - | chr8.3:3724245-3724264 | MS.gene96312:CDS | 45.0% |
| !!! | GAACAGGGGAAGTATTTTCC+AGG | + | chr8.3:3724308-3724327 | None:intergenic | 45.0% |
| !!! | GGTCTTTTTCAGACATGTGG+TGG | + | chr8.3:3725113-3725132 | None:intergenic | 45.0% |
| !!! | TGCTGCTGCTGCTGATTTTT+TGG | - | chr8.3:3724150-3724169 | MS.gene96312:intron | 45.0% |
| AACTGATTGCCGACGGCTTT+AGG | + | chr8.3:3725245-3725264 | None:intergenic | 50.0% | |
| ACATTGCTCGCATTCCACAC+GGG | - | chr8.3:3724331-3724350 | MS.gene96312:intron | 50.0% | |
| ACGAGATGGAGATGGATGGT+AGG | - | chr8.3:3724358-3724377 | MS.gene96312:intron | 50.0% | |
| ATCAACAATCCTTGGGTGGG+GGG | - | chr8.3:3724777-3724796 | MS.gene96312:intron | 50.0% | |
| CCGTCGGCAATCAGTTGTTA+TGG | - | chr8.3:3725249-3725268 | MS.gene96312:intron | 50.0% | |
| CGGAAAATGATAGAGGCTGC+TGG | - | chr8.3:3725719-3725738 | MS.gene96312:intron | 50.0% | |
| CTTACACACAAGGCGGGAAA+AGG | + | chr8.3:3725148-3725167 | None:intergenic | 50.0% | |
| GAGGATCAACAATCCTTGGG+TGG | - | chr8.3:3724773-3724792 | MS.gene96312:intron | 50.0% | |
| GATCAACAATCCTTGGGTGG+GGG | - | chr8.3:3724776-3724795 | MS.gene96312:intron | 50.0% | |
| GCGAGCAATGTACAGAACAG+GGG | + | chr8.3:3724322-3724341 | None:intergenic | 50.0% | |
| GGATCAACAATCCTTGGGTG+GGG | - | chr8.3:3724775-3724794 | MS.gene96312:intron | 50.0% | |
| GGGAAAAGGATCGAGAGCTT+CGG | + | chr8.3:3725134-3725153 | None:intergenic | 50.0% | |
| GTGCATGGCTTTCTTTGCCT+TGG | + | chr8.3:3724092-3724111 | None:intergenic | 50.0% | |
| TGAACGGGAACGACATGACA+AGG | - | chr8.3:3725538-3725557 | MS.gene96312:intron | 50.0% | |
| TTGTCTCAGCCGTTGGATTG+TGG | - | chr8.3:3724252-3724271 | MS.gene96312:CDS | 50.0% | |
| ! | CTTGAAGCACCTAAAGCCGT+CGG | - | chr8.3:3725233-3725252 | MS.gene96312:intron | 50.0% |
| !! | ACGGCTTTAGGTGCTTCAAG+TGG | + | chr8.3:3725233-3725252 | None:intergenic | 50.0% |
| !! | TTATCTTCTTTGGGGCAGGC+TGG | + | chr8.3:3725871-3725890 | None:intergenic | 50.0% |
| AGTTCAGGAAGTTTGCGGCC+AGG | + | chr8.3:3724279-3724298 | None:intergenic | 55.0% | |
| CGGGTTCTACGAGATGGAGA+TGG | - | chr8.3:3724350-3724369 | MS.gene96312:intron | 55.0% | |
| CTAGTTAAACCCCCCACCCA+AGG | + | chr8.3:3724789-3724808 | None:intergenic | 55.0% | |
| TCCACACGGGTTCTACGAGA+TGG | - | chr8.3:3724344-3724363 | MS.gene96312:intron | 55.0% | |
| TCCATCTCGTAGAACCCGTG+TGG | + | chr8.3:3724348-3724367 | None:intergenic | 55.0% | |
| CAGCCGTTGGATTGTGGTCC+TGG | - | chr8.3:3724258-3724277 | MS.gene96312:CDS | 60.0% | |
| CGGCCAGGACCACAATCCAA+CGG | + | chr8.3:3724264-3724283 | None:intergenic | 60.0% | |
| !! | TCTTCTTTGGGGCAGGCTGG+AGG | + | chr8.3:3725868-3725887 | None:intergenic | 60.0% |
| GCAGCAGCAGCAGGGTGAGA+TGG | + | chr8.3:3724142-3724161 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 3724082 | 3725904 | 3724082 | ID=MS.gene96312 |
| chr8.3 | mRNA | 3724082 | 3725904 | 3724082 | ID=MS.gene96312.t1;Parent=MS.gene96312 |
| chr8.3 | exon | 3725815 | 3725904 | 3725815 | ID=MS.gene96312.t1.exon1;Parent=MS.gene96312.t1 |
| chr8.3 | CDS | 3725815 | 3725904 | 3725815 | ID=cds.MS.gene96312.t1;Parent=MS.gene96312.t1 |
| chr8.3 | exon | 3725611 | 3725725 | 3725611 | ID=MS.gene96312.t1.exon2;Parent=MS.gene96312.t1 |
| chr8.3 | CDS | 3725611 | 3725725 | 3725611 | ID=cds.MS.gene96312.t1;Parent=MS.gene96312.t1 |
| chr8.3 | exon | 3725344 | 3725545 | 3725344 | ID=MS.gene96312.t1.exon3;Parent=MS.gene96312.t1 |
| chr8.3 | CDS | 3725344 | 3725545 | 3725344 | ID=cds.MS.gene96312.t1;Parent=MS.gene96312.t1 |
| chr8.3 | exon | 3724427 | 3724496 | 3724427 | ID=MS.gene96312.t1.exon4;Parent=MS.gene96312.t1 |
| chr8.3 | CDS | 3724427 | 3724496 | 3724427 | ID=cds.MS.gene96312.t1;Parent=MS.gene96312.t1 |
| chr8.3 | exon | 3724220 | 3724330 | 3724220 | ID=MS.gene96312.t1.exon5;Parent=MS.gene96312.t1 |
| chr8.3 | CDS | 3724220 | 3724330 | 3724220 | ID=cds.MS.gene96312.t1;Parent=MS.gene96312.t1 |
| chr8.3 | exon | 3724082 | 3724129 | 3724082 | ID=MS.gene96312.t1.exon6;Parent=MS.gene96312.t1 |
| chr8.3 | CDS | 3724082 | 3724129 | 3724082 | ID=cds.MS.gene96312.t1;Parent=MS.gene96312.t1 |
| Gene Sequence |
| Protein sequence |
