Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96780.t1 | XP_003607729.1 | 92 | 563 | 35 | 1 | 1 | 553 | 1 | 563 | 5.40E-294 | 1019.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96780.t1 | Q9C923 | 75.8 | 504 | 111 | 2 | 4 | 496 | 3 | 506 | 3.4e-220 | 765.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96780.t1 | G7JF60 | 92.0 | 563 | 35 | 1 | 1 | 553 | 1 | 563 | 3.9e-294 | 1019.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96780.t1 | MTR_4g081850 | 92.540 | 563 | 32 | 1 | 1 | 553 | 1 | 563 | 0.0 | 1042 |
| MS.gene96780.t1 | MTR_2g079510 | 88.592 | 561 | 56 | 2 | 1 | 553 | 1 | 561 | 0.0 | 1018 |
| MS.gene96780.t1 | MTR_1g048030 | 38.676 | 287 | 153 | 3 | 189 | 452 | 125 | 411 | 2.94e-58 | 204 |
| MS.gene96780.t1 | MTR_4g050490 | 28.721 | 383 | 190 | 11 | 185 | 492 | 150 | 524 | 7.29e-34 | 136 |
| MS.gene96780.t1 | MTR_5g010400 | 65.278 | 72 | 25 | 0 | 7 | 78 | 14 | 85 | 2.99e-23 | 94.4 |
| MS.gene96780.t1 | MTR_7g094890 | 25.843 | 267 | 166 | 8 | 198 | 445 | 110 | 363 | 2.02e-15 | 78.6 |
| MS.gene96780.t1 | MTR_2g079540 | 70.000 | 50 | 13 | 1 | 7 | 54 | 15 | 64 | 1.24e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96780.t1 | AT1G52980 | 72.263 | 548 | 136 | 3 | 4 | 535 | 3 | 550 | 0.0 | 785 |
| MS.gene96780.t1 | AT3G07050 | 35.714 | 308 | 174 | 2 | 169 | 452 | 100 | 407 | 4.75e-61 | 212 |
| MS.gene96780.t1 | AT2G27200 | 30.031 | 323 | 169 | 6 | 185 | 452 | 149 | 469 | 1.39e-36 | 143 |
| MS.gene96780.t1 | AT1G08410 | 27.614 | 373 | 201 | 8 | 185 | 490 | 149 | 519 | 1.51e-35 | 141 |
| MS.gene96780.t1 | AT4G02790 | 26.115 | 314 | 198 | 9 | 155 | 447 | 64 | 364 | 1.47e-17 | 85.1 |
Find 129 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATTTGCAATACCTTTAA+TGG | 0.138476 | 4.3:+28266841 | None:intergenic |
| CTTTCAAATGCTTCTCTAAA+TGG | 0.150218 | 4.3:+28268109 | None:intergenic |
| GCTCCTTCTTCACACGTTTC+AGG | 0.189901 | 4.3:+28267128 | None:intergenic |
| GGTCAGGTTCACCGCCTTTA+AGG | 0.208215 | 4.3:+28267023 | None:intergenic |
| GCAAGCATTAATAAGTCTTT+TGG | 0.224309 | 4.3:-28267967 | MS.gene96780:CDS |
| CTTACAGGTTGCTCCAATTC+CGG | 0.231915 | 4.3:-28267314 | MS.gene96780:intron |
| CAGGCATCTGCTGCCATTAA+AGG | 0.234669 | 4.3:-28266854 | MS.gene96780:CDS |
| TCATCTGGCAAACTCCTTAA+AGG | 0.256903 | 4.3:-28267037 | MS.gene96780:CDS |
| ATATAATGAGAATGAGTTAA+AGG | 0.292360 | 4.3:-28266774 | MS.gene96780:CDS |
| GGCTGAGCGTGACTGGATTT+TGG | 0.293828 | 4.3:+28268701 | None:intergenic |
| AACCCGATCGCCAATGGTTC+GGG | 0.298498 | 4.3:-28268569 | MS.gene96780:CDS |
| TATGAGGAGCCTAATGTTAA+TGG | 0.328014 | 4.3:-28266908 | MS.gene96780:CDS |
| ATTAGAGTGCTTTGGTTTAC+CGG | 0.328797 | 4.3:+28268746 | None:intergenic |
| AAGAAAACGTCCAAGCCTTT+TGG | 0.329842 | 4.3:-28268352 | MS.gene96780:CDS |
| ACCGTAAGGGCCGTGTCTTA+TGG | 0.341749 | 4.3:-28268632 | MS.gene96780:CDS |
| CTTACGGTTGCGGACGGGTT+TGG | 0.345951 | 4.3:+28268647 | None:intergenic |
| ATGATTACCAGAAGCAATCT+AGG | 0.346051 | 4.3:-28268428 | MS.gene96780:CDS |
| CCGTAAGGGCCGTGTCTTAT+GGG | 0.347948 | 4.3:-28268631 | MS.gene96780:CDS |
| TTACAGGTTGCTCCAATTCC+GGG | 0.351375 | 4.3:-28267313 | MS.gene96780:intron |
| CAGTGGCGGCTGAGCGTGAC+TGG | 0.355736 | 4.3:+28268694 | None:intergenic |
| ACAGATGACTTCCCAACATT+TGG | 0.356765 | 4.3:+28267859 | None:intergenic |
| AAACCCGATCGCCAATGGTT+CGG | 0.366201 | 4.3:-28268570 | MS.gene96780:CDS |
| TATAATGAGAATGAGTTAAA+GGG | 0.392821 | 4.3:-28266773 | MS.gene96780:CDS |
| GGTGAACCCTAGATTGCTTC+TGG | 0.393253 | 4.3:+28268421 | None:intergenic |
| TGGGAGCAGTATCAACTATC+AGG | 0.394601 | 4.3:-28268612 | MS.gene96780:CDS |
| GGGCAACGAAAGGATGGCTT+AGG | 0.399832 | 4.3:-28268026 | MS.gene96780:CDS |
| TTCTTCAGATGTTGTTGTGC+AGG | 0.401568 | 4.3:-28268169 | MS.gene96780:CDS |
| AACATTAGGCTCCTCATACT+TGG | 0.402135 | 4.3:+28266913 | None:intergenic |
| GTTTCAGGACCTCGCCTATA+TGG | 0.404770 | 4.3:+28267143 | None:intergenic |
| TTCCCGAACCATTGGCGATC+GGG | 0.409646 | 4.3:+28268567 | None:intergenic |
| GAAACTCGTTATTCATTTGT+TGG | 0.421464 | 4.3:+28266634 | None:intergenic |
| CCCATAAGACACGGCCCTTA+CGG | 0.423389 | 4.3:+28268631 | None:intergenic |
| CTTCAGCTTTGCAAATCATC+TGG | 0.430614 | 4.3:-28267052 | MS.gene96780:CDS |
| AAACTCGTTATTCATTTGTT+GGG | 0.434048 | 4.3:+28266635 | None:intergenic |
| ACATCAATGCCATTAACATT+AGG | 0.437807 | 4.3:+28266899 | None:intergenic |
| AAAGATGCTGCTGACCATAT+AGG | 0.439860 | 4.3:-28267157 | MS.gene96780:CDS |
| TGGAAAGGGTTCACTTCTAT+CGG | 0.440433 | 4.3:-28267947 | MS.gene96780:CDS |
| TGGCAGCAGATGCCTGGTTA+TGG | 0.442559 | 4.3:+28266861 | None:intergenic |
| TTGGCGTCATTAGAGTGCTT+TGG | 0.444184 | 4.3:+28268738 | None:intergenic |
| AGGGTCAAAGCAAACGCATA+TGG | 0.452368 | 4.3:-28268215 | MS.gene96780:CDS |
| TTTGTTGGATATCCAAATGT+TGG | 0.456100 | 4.3:-28267871 | MS.gene96780:CDS |
| GCGACATACCATGTTTGAAA+AGG | 0.465171 | 4.3:-28268235 | MS.gene96780:CDS |
| TTTGGAGTCATTGCTGCGGT+TGG | 0.465405 | 4.3:+28268719 | None:intergenic |
| TTATATAAATCACCTTGAAC+TGG | 0.466516 | 4.3:+28266791 | None:intergenic |
| TTGTTGGATATCCAAATGTT+GGG | 0.472784 | 4.3:-28267870 | MS.gene96780:CDS |
| CAACAAAGTGTACCAGTTCA+AGG | 0.472963 | 4.3:-28266803 | MS.gene96780:CDS |
| GGGTCAAAGCAAACGCATAT+GGG | 0.476137 | 4.3:-28268214 | MS.gene96780:CDS |
| GTGTGATCTAATTCCTGCTT+GGG | 0.482321 | 4.3:-28268046 | MS.gene96780:CDS |
| CTTTAATGGCAGCAGATGCC+TGG | 0.487148 | 4.3:+28266855 | None:intergenic |
| TCATCTTTGCAGCAGTCATA+AGG | 0.488979 | 4.3:+28267002 | None:intergenic |
| GGAAGACCTGTCCAAGTATG+AGG | 0.491469 | 4.3:-28266924 | MS.gene96780:CDS |
| AAGACTTATTAATGCTTGCA+TGG | 0.501286 | 4.3:+28267971 | None:intergenic |
| TAATTATAATGTTATCATCA+AGG | 0.504072 | 4.3:-28268478 | MS.gene96780:CDS |
| GAAAGTAATGAAGCTGATGA+TGG | 0.504709 | 4.3:-28268273 | MS.gene96780:CDS |
| CATCCTTTCGTTGCCCAAGC+AGG | 0.506924 | 4.3:+28268033 | None:intergenic |
| CGGCCCTTACGGTTGCGGAC+GGG | 0.508314 | 4.3:+28268642 | None:intergenic |
| TTGTTGTGGTAGACAACTCC+TGG | 0.509529 | 4.3:+28267232 | None:intergenic |
| TAATCAGAAGCCAAAAGGCT+TGG | 0.510436 | 4.3:+28268342 | None:intergenic |
| GTTTGATTCTCGTGGATGGA+AGG | 0.510865 | 4.3:+28268589 | None:intergenic |
| GAGAGAAGCGTGAATGTCTC+CGG | 0.514912 | 4.3:-28268765 | MS.gene96780:CDS |
| CAAACCCGTCCGCAACCGTA+AGG | 0.516484 | 4.3:-28268646 | MS.gene96780:CDS |
| CGTGAGGATTCCCGAACCAT+TGG | 0.518846 | 4.3:+28268559 | None:intergenic |
| CTGCTTGGGCAACGAAAGGA+TGG | 0.519512 | 4.3:-28268032 | MS.gene96780:CDS |
| GGTCCTGAAACGTGTGAAGA+AGG | 0.520602 | 4.3:-28267131 | MS.gene96780:CDS |
| CGACATACCATGTTTGAAAA+GGG | 0.520906 | 4.3:-28268234 | MS.gene96780:CDS |
| AGACACGGCCCTTACGGTTG+CGG | 0.521696 | 4.3:+28268637 | None:intergenic |
| TCGGGTTTGATTCTCGTGGA+TGG | 0.524475 | 4.3:+28268585 | None:intergenic |
| ACTCATAATCAGAAGCCAAA+AGG | 0.529611 | 4.3:+28268337 | None:intergenic |
| TTTGCAGCAGTCATAAGGTC+AGG | 0.530012 | 4.3:+28267007 | None:intergenic |
| AATTATAATGTTATCATCAA+GGG | 0.531967 | 4.3:-28268477 | MS.gene96780:CDS |
| AGCCTATAAAATAAAAGAGT+GGG | 0.532348 | 4.3:-28267095 | MS.gene96780:CDS |
| GAATCAAACCCGATCGCCAA+TGG | 0.532452 | 4.3:-28268575 | MS.gene96780:CDS |
| CAAAGATGATACTTCATGAC+TGG | 0.544123 | 4.3:-28266988 | MS.gene96780:CDS |
| GGCAACGAAAGGATGGCTTA+GGG | 0.546997 | 4.3:-28268025 | MS.gene96780:CDS |
| TGCTGACAAACTTCTGAACT+CGG | 0.547967 | 4.3:-28266744 | MS.gene96780:CDS |
| AGTGTGATCTAATTCCTGCT+TGG | 0.549217 | 4.3:-28268047 | MS.gene96780:CDS |
| GAGCCTATAAAATAAAAGAG+TGG | 0.550840 | 4.3:-28267096 | MS.gene96780:CDS |
| ATTCCCGAACCATTGGCGAT+CGG | 0.551780 | 4.3:+28268566 | None:intergenic |
| ACGGCCCTTACGGTTGCGGA+CGG | 0.551921 | 4.3:+28268641 | None:intergenic |
| TGAAACAGATGTTGTGCTGA+AGG | 0.552137 | 4.3:-28267203 | MS.gene96780:CDS |
| TGATACTTCATGACTGGCAG+AGG | 0.552770 | 4.3:-28266982 | MS.gene96780:CDS |
| GAACAGCTTACTTCTGCAGC+TGG | 0.555564 | 4.3:-28266659 | MS.gene96780:CDS |
| TCAGATGGAACCTCGGTGGA+TGG | 0.556459 | 4.3:+28266680 | None:intergenic |
| TTGTGCAGGTTATAGATGCA+AGG | 0.560683 | 4.3:-28268155 | MS.gene96780:CDS |
| CATATGGGGTGAACTCTACA+AGG | 0.561859 | 4.3:-28268199 | MS.gene96780:CDS |
| ATGATTTGCAAAGCTGAAGT+AGG | 0.563324 | 4.3:+28267056 | None:intergenic |
| TGGTAACATCTTGTACCTTG+TGG | 0.564112 | 4.3:+28268129 | None:intergenic |
| TAGGCTCCTCATACTTGGAC+AGG | 0.566773 | 4.3:+28266918 | None:intergenic |
| TTGGACAGGTCTTCCAGCCA+TGG | 0.567698 | 4.3:+28266932 | None:intergenic |
| AGATAGCGACACATTTGAGC+AGG | 0.568986 | 4.3:-28266705 | MS.gene96780:CDS |
| TCTTTCTGATTCACAACGTG+AGG | 0.569890 | 4.3:+28268543 | None:intergenic |
| TACAGGTTGCTCCAATTCCG+GGG | 0.570126 | 4.3:-28267312 | MS.gene96780:intron |
| GCGTACTAAGAATGTTTGCA+AGG | 0.578208 | 4.3:-28267824 | MS.gene96780:intron |
| GCAGAAGTAAGCTGTTCAGA+TGG | 0.582024 | 4.3:+28266665 | None:intergenic |
| CTTGCATGGAATGCTAGAGT+TGG | 0.588926 | 4.3:+28267985 | None:intergenic |
| TCTTTAGCTAAGAAAGCTGA+TGG | 0.590099 | 4.3:-28268315 | MS.gene96780:CDS |
| GCGATCGGGTTTGATTCTCG+TGG | 0.591809 | 4.3:+28268581 | None:intergenic |
| AGGTCTTCCAGCCATGGAGG+AGG | 0.591963 | 4.3:+28266938 | None:intergenic |
| TGGTATTGTACGTCTTGAGA+CGG | 0.597906 | 4.3:+28268667 | None:intergenic |
| ATTCCTGCTTGGGCAACGAA+AGG | 0.599291 | 4.3:-28268036 | MS.gene96780:CDS |
| TGATTACCAGAAGCAATCTA+GGG | 0.600894 | 4.3:-28268427 | MS.gene96780:CDS |
| CTTGAGACGGCGAACAGTGG+CGG | 0.602056 | 4.3:+28268680 | None:intergenic |
| AAACCCGTCCGCAACCGTAA+GGG | 0.603072 | 4.3:-28268645 | MS.gene96780:CDS |
| GATAAACAAGCAATATCTGT+CGG | 0.606616 | 4.3:-28267895 | MS.gene96780:CDS |
| GTAATCATTGAGAAGCGACA+TGG | 0.608065 | 4.3:+28268443 | None:intergenic |
| TGTGCAGGTTATAGATGCAA+GGG | 0.613175 | 4.3:-28268154 | MS.gene96780:CDS |
| GATACTTCATGACTGGCAGA+GGG | 0.617838 | 4.3:-28266981 | MS.gene96780:CDS |
| ATTATAATGTTATCATCAAG+GGG | 0.619969 | 4.3:-28268476 | MS.gene96780:CDS |
| AGTATATAACCCTTACAAAG+AGG | 0.626422 | 4.3:-28267273 | MS.gene96780:CDS |
| GAAACAGATGTTGTGCTGAA+GGG | 0.627267 | 4.3:-28267202 | MS.gene96780:CDS |
| AGATGTTGTGCTGAAGGGCG+TGG | 0.627685 | 4.3:-28267197 | MS.gene96780:CDS |
| CTGTTTCAGAGTCATTGTTG+TGG | 0.635053 | 4.3:+28267218 | None:intergenic |
| GGTCAAAGCAAACGCATATG+GGG | 0.635960 | 4.3:-28268213 | MS.gene96780:CDS |
| GACAGGTCTTCCAGCCATGG+AGG | 0.641023 | 4.3:+28266935 | None:intergenic |
| TGAGGCAGTTGACCATAACC+AGG | 0.646672 | 4.3:-28266873 | MS.gene96780:CDS |
| TGCTGCTGACCATATAGGCG+AGG | 0.647460 | 4.3:-28267152 | MS.gene96780:CDS |
| AAATTGCAAGCACAAACACA+TGG | 0.648597 | 4.3:-28268085 | MS.gene96780:CDS |
| CGTCTTGAGACGGCGAACAG+TGG | 0.652459 | 4.3:+28268677 | None:intergenic |
| ACAGGTTGCTCCAATTCCGG+GGG | 0.652730 | 4.3:-28267311 | MS.gene96780:intron |
| TAATGGCATTGATGTTGATG+AGG | 0.665181 | 4.3:-28266891 | MS.gene96780:CDS |
| TAATCATTGAGAAGCGACAT+GGG | 0.665391 | 4.3:+28268444 | None:intergenic |
| CTGTTCAGATGGAACCTCGG+TGG | 0.679880 | 4.3:+28266676 | None:intergenic |
| AAGCTGTTCAGATGGAACCT+CGG | 0.685311 | 4.3:+28266673 | None:intergenic |
| TGACAAACTTCTGAACTCGG+AGG | 0.694828 | 4.3:-28266741 | MS.gene96780:CDS |
| TCTGGCAAACTCCTTAAAGG+CGG | 0.702803 | 4.3:-28267034 | MS.gene96780:CDS |
| GATACTGCTCCCATAAGACA+CGG | 0.708733 | 4.3:+28268622 | None:intergenic |
| ATACTTCATGACTGGCAGAG+GGG | 0.723483 | 4.3:-28266980 | MS.gene96780:CDS |
| TGAGCAGGATCCATCCACCG+AGG | 0.767844 | 4.3:-28266690 | MS.gene96780:CDS |
| ATAGATGCAAGGGATCCACA+AGG | 0.773503 | 4.3:-28268144 | MS.gene96780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTAATTATTCTTAC+AGG | - | chr4.3:28268097-28268116 | MS.gene96780:CDS | 10.0% |
| !! | TTAATAATATAATTGCTTTA+TGG | + | chr4.3:28268087-28268106 | None:intergenic | 10.0% |
| !! | AATTATAATGTTATCATCAA+GGG | - | chr4.3:28266949-28266968 | MS.gene96780:CDS | 15.0% |
| !! | TAATTATAATGTTATCATCA+AGG | - | chr4.3:28266948-28266967 | MS.gene96780:CDS | 15.0% |
| !! | AATATTTGCAATACCTTTAA+TGG | + | chr4.3:28268588-28268607 | None:intergenic | 20.0% |
| !! | ATATAATGAGAATGAGTTAA+AGG | - | chr4.3:28268652-28268671 | MS.gene96780:CDS | 20.0% |
| !! | ATTATAATGTTATCATCAAG+GGG | - | chr4.3:28266950-28266969 | MS.gene96780:CDS | 20.0% |
| !! | TATAATGAGAATGAGTTAAA+GGG | - | chr4.3:28268653-28268672 | MS.gene96780:CDS | 20.0% |
| !! | TTACATGTAATTATAGAAAG+AGG | - | chr4.3:28267767-28267786 | MS.gene96780:intron | 20.0% |
| !!! | AAACATTCGCTATAATTTTT+TGG | + | chr4.3:28267807-28267826 | None:intergenic | 20.0% |
| !!! | ATTAATAAGTCTTTTGGAAA+GGG | - | chr4.3:28267465-28267484 | MS.gene96780:intron | 20.0% |
| ! | AATTACTAACTAATGCACAA+AGG | + | chr4.3:28267739-28267758 | None:intergenic | 25.0% |
| ! | AGCCTATAAAATAAAAGAGT+GGG | - | chr4.3:28268331-28268350 | MS.gene96780:CDS | 25.0% |
| ! | ATTATTCATGTGAATGTGAA+AGG | + | chr4.3:28268043-28268062 | None:intergenic | 25.0% |
| ! | TTATATAAATCACCTTGAAC+TGG | + | chr4.3:28268638-28268657 | None:intergenic | 25.0% |
| !!! | AACCCACTCTTTTATTTTAT+AGG | + | chr4.3:28268336-28268355 | None:intergenic | 25.0% |
| !!! | AGAGTTTTTTAGAGAAGAAA+TGG | - | chr4.3:28266909-28266928 | MS.gene96780:CDS | 25.0% |
| !!! | CATTAATAAGTCTTTTGGAA+AGG | - | chr4.3:28267464-28267483 | MS.gene96780:intron | 25.0% |
| AAAAAGGTTCTCTATCAAGA+AGG | + | chr4.3:28267029-28267048 | None:intergenic | 30.0% | |
| AAGACTTATTAATGCTTGCA+TGG | + | chr4.3:28267458-28267477 | None:intergenic | 30.0% | |
| AATCAAAATTCTCACTTCAG+CGG | - | chr4.3:28267852-28267871 | MS.gene96780:CDS | 30.0% | |
| ACATCAATGCCATTAACATT+AGG | + | chr4.3:28268530-28268549 | None:intergenic | 30.0% | |
| AGTATATAACCCTTACAAAG+AGG | - | chr4.3:28268153-28268172 | MS.gene96780:CDS | 30.0% | |
| CAAAAAGATCCTCTTTGTAA+GGG | + | chr4.3:28268165-28268184 | None:intergenic | 30.0% | |
| CTATATATATCGCGAAAAAG+TGG | + | chr4.3:28267950-28267969 | None:intergenic | 30.0% | |
| CTTTCAAATGCTTCTCTAAA+TGG | + | chr4.3:28267320-28267339 | None:intergenic | 30.0% | |
| GAGCCTATAAAATAAAAGAG+TGG | - | chr4.3:28268330-28268349 | MS.gene96780:CDS | 30.0% | |
| GATAAACAAGCAATATCTGT+CGG | - | chr4.3:28267531-28267550 | MS.gene96780:intron | 30.0% | |
| TCAAAAAGATCCTCTTTGTA+AGG | + | chr4.3:28268166-28268185 | None:intergenic | 30.0% | |
| TGTTGCATATATTCATCAAG+AGG | + | chr4.3:28268000-28268019 | None:intergenic | 30.0% | |
| TTGTTGGATATCCAAATGTT+GGG | - | chr4.3:28267556-28267575 | MS.gene96780:intron | 30.0% | |
| TTTATGGTGACTCATATGTA+AGG | + | chr4.3:28268071-28268090 | None:intergenic | 30.0% | |
| TTTGTTGGATATCCAAATGT+TGG | - | chr4.3:28267555-28267574 | MS.gene96780:intron | 30.0% | |
| ! | GCAAGCATTAATAAGTCTTT+TGG | - | chr4.3:28267459-28267478 | MS.gene96780:intron | 30.0% |
| !! | ATCTTTTTGATTGATTGTCC+AGG | - | chr4.3:28268176-28268195 | MS.gene96780:CDS | 30.0% |
| AAATTGCAAGCACAAACACA+TGG | - | chr4.3:28267341-28267360 | MS.gene96780:intron | 35.0% | |
| ACTCATAATCAGAAGCCAAA+AGG | + | chr4.3:28267092-28267111 | None:intergenic | 35.0% | |
| ATGATTACCAGAAGCAATCT+AGG | - | chr4.3:28266998-28267017 | MS.gene96780:CDS | 35.0% | |
| CAAAGATGATACTTCATGAC+TGG | - | chr4.3:28268438-28268457 | MS.gene96780:CDS | 35.0% | |
| CGACATACCATGTTTGAAAA+GGG | - | chr4.3:28267192-28267211 | MS.gene96780:CDS | 35.0% | |
| GAAAGTAATGAAGCTGATGA+TGG | - | chr4.3:28267153-28267172 | MS.gene96780:CDS | 35.0% | |
| TAATCATTGAGAAGCGACAT+GGG | + | chr4.3:28266985-28267004 | None:intergenic | 35.0% | |
| TATGAGGAGCCTAATGTTAA+TGG | - | chr4.3:28268518-28268537 | MS.gene96780:CDS | 35.0% | |
| TCTTTAGCTAAGAAAGCTGA+TGG | - | chr4.3:28267111-28267130 | MS.gene96780:CDS | 35.0% | |
| TGATTACCAGAAGCAATCTA+GGG | - | chr4.3:28266999-28267018 | MS.gene96780:CDS | 35.0% | |
| ! | ATGATTTGCAAAGCTGAAGT+AGG | + | chr4.3:28268373-28268392 | None:intergenic | 35.0% |
| ! | ATTAGAGTGCTTTGGTTTAC+CGG | + | chr4.3:28266683-28266702 | None:intergenic | 35.0% |
| ! | TTTGATTGGTCAACTGGTAA+TGG | + | chr4.3:28267839-28267858 | None:intergenic | 35.0% |
| !! | GCTGAAGTGAGAATTTTGAT+TGG | + | chr4.3:28267853-28267872 | None:intergenic | 35.0% |
| !! | GGACGTTTTCTTTTAGTCTT+AGG | + | chr4.3:28267066-28267085 | None:intergenic | 35.0% |
| !! | TAATGGCATTGATGTTGATG+AGG | - | chr4.3:28268535-28268554 | MS.gene96780:CDS | 35.0% |
| !!! | GAGAATTTTGATTGGTCAAC+TGG | + | chr4.3:28267845-28267864 | None:intergenic | 35.0% |
| AAAGATGCTGCTGACCATAT+AGG | - | chr4.3:28268269-28268288 | MS.gene96780:CDS | 40.0% | |
| AACATTAGGCTCCTCATACT+TGG | + | chr4.3:28268516-28268535 | None:intergenic | 40.0% | |
| ACAGATGACTTCCCAACATT+TGG | + | chr4.3:28267570-28267589 | None:intergenic | 40.0% | |
| AGTGTGATCTAATTCCTGCT+TGG | - | chr4.3:28267379-28267398 | MS.gene96780:intron | 40.0% | |
| CAACAAAGTGTACCAGTTCA+AGG | - | chr4.3:28268623-28268642 | MS.gene96780:CDS | 40.0% | |
| CATGGAGGAGGAACAAAAAA+GGG | + | chr4.3:28268479-28268498 | None:intergenic | 40.0% | |
| CTGTTTCAGAGTCATTGTTG+TGG | + | chr4.3:28268211-28268230 | None:intergenic | 40.0% | |
| CTTCAGCTTTGCAAATCATC+TGG | - | chr4.3:28268374-28268393 | MS.gene96780:CDS | 40.0% | |
| GAAACAGATGTTGTGCTGAA+GGG | - | chr4.3:28268224-28268243 | MS.gene96780:CDS | 40.0% | |
| GCGACATACCATGTTTGAAA+AGG | - | chr4.3:28267191-28267210 | MS.gene96780:CDS | 40.0% | |
| GCGTACTAAGAATGTTTGCA+AGG | - | chr4.3:28267602-28267621 | MS.gene96780:intron | 40.0% | |
| GGAGTACATGGAAGTTGTTA+GGG | - | chr4.3:28267892-28267911 | MS.gene96780:CDS | 40.0% | |
| GGTGCACGTGAATTTCTATA+AGG | + | chr4.3:28267979-28267998 | None:intergenic | 40.0% | |
| GTAATCATTGAGAAGCGACA+TGG | + | chr4.3:28266986-28267005 | None:intergenic | 40.0% | |
| GTGTGATCTAATTCCTGCTT+GGG | - | chr4.3:28267380-28267399 | MS.gene96780:intron | 40.0% | |
| TAATCAGAAGCCAAAAGGCT+TGG | + | chr4.3:28267087-28267106 | None:intergenic | 40.0% | |
| TCATCTGGCAAACTCCTTAA+AGG | - | chr4.3:28268389-28268408 | MS.gene96780:CDS | 40.0% | |
| TCATCTTTGCAGCAGTCATA+AGG | + | chr4.3:28268427-28268446 | None:intergenic | 40.0% | |
| TCTTTCTGATTCACAACGTG+AGG | + | chr4.3:28266886-28266905 | None:intergenic | 40.0% | |
| TGAAACAGATGTTGTGCTGA+AGG | - | chr4.3:28268223-28268242 | MS.gene96780:CDS | 40.0% | |
| TGCTGACAAACTTCTGAACT+CGG | - | chr4.3:28268682-28268701 | MS.gene96780:CDS | 40.0% | |
| TGGAAAGGGTTCACTTCTAT+CGG | - | chr4.3:28267479-28267498 | MS.gene96780:intron | 40.0% | |
| TGGTAACATCTTGTACCTTG+TGG | + | chr4.3:28267300-28267319 | None:intergenic | 40.0% | |
| TGGTATTGTACGTCTTGAGA+CGG | + | chr4.3:28266762-28266781 | None:intergenic | 40.0% | |
| TGTGCAGGTTATAGATGCAA+GGG | - | chr4.3:28267272-28267291 | MS.gene96780:CDS | 40.0% | |
| TTCTTCAGATGTTGTTGTGC+AGG | - | chr4.3:28267257-28267276 | MS.gene96780:CDS | 40.0% | |
| TTGTGCAGGTTATAGATGCA+AGG | - | chr4.3:28267271-28267290 | MS.gene96780:CDS | 40.0% | |
| ! | AAGAAAACGTCCAAGCCTTT+TGG | - | chr4.3:28267074-28267093 | MS.gene96780:CDS | 40.0% |
| ! | AGGAGTACATGGAAGTTGTT+AGG | - | chr4.3:28267891-28267910 | MS.gene96780:CDS | 40.0% |
| ! | GCTTTGACCCTTTTCAAACA+TGG | + | chr4.3:28267202-28267221 | None:intergenic | 40.0% |
| !!! | CGGTTTTGAGACAATTTGCA+AGG | - | chr4.3:28267499-28267518 | MS.gene96780:intron | 40.0% |
| !!! | GAACCTTTTTTGCATGCGTT+TGG | - | chr4.3:28267039-28267058 | MS.gene96780:CDS | 40.0% |
| !!! | GCAATATCTGTCGGTTTTGT+TGG | - | chr4.3:28267540-28267559 | MS.gene96780:intron | 40.0% |
| AAGCTGTTCAGATGGAACCT+CGG | + | chr4.3:28268756-28268775 | None:intergenic | 45.0% | |
| AGATAGCGACACATTTGAGC+AGG | - | chr4.3:28268721-28268740 | MS.gene96780:CDS | 45.0% | |
| AGGGTCAAAGCAAACGCATA+TGG | - | chr4.3:28267211-28267230 | MS.gene96780:CDS | 45.0% | |
| ATACTTCATGACTGGCAGAG+GGG | - | chr4.3:28268446-28268465 | MS.gene96780:CDS | 45.0% | |
| ATAGATGCAAGGGATCCACA+AGG | - | chr4.3:28267282-28267301 | MS.gene96780:CDS | 45.0% | |
| CATATGGGGTGAACTCTACA+AGG | - | chr4.3:28267227-28267246 | MS.gene96780:CDS | 45.0% | |
| CCATGGAGGAGGAACAAAAA+AGG | + | chr4.3:28268480-28268499 | None:intergenic | 45.0% | |
| CTTACAGGTTGCTCCAATTC+CGG | - | chr4.3:28268112-28268131 | MS.gene96780:CDS | 45.0% | |
| CTTGCATGGAATGCTAGAGT+TGG | + | chr4.3:28267444-28267463 | None:intergenic | 45.0% | |
| GATACTGCTCCCATAAGACA+CGG | + | chr4.3:28266807-28266826 | None:intergenic | 45.0% | |
| GATACTTCATGACTGGCAGA+GGG | - | chr4.3:28268445-28268464 | MS.gene96780:CDS | 45.0% | |
| GCAGAAGTAAGCTGTTCAGA+TGG | + | chr4.3:28268764-28268783 | None:intergenic | 45.0% | |
| GGGTCAAAGCAAACGCATAT+GGG | - | chr4.3:28267212-28267231 | MS.gene96780:CDS | 45.0% | |
| GGTCAAAGCAAACGCATATG+GGG | - | chr4.3:28267213-28267232 | MS.gene96780:CDS | 45.0% | |
| GGTCCAAACGCATGCAAAAA+AGG | + | chr4.3:28267045-28267064 | None:intergenic | 45.0% | |
| GTTTGATTCTCGTGGATGGA+AGG | + | chr4.3:28266840-28266859 | None:intergenic | 45.0% | |
| TCTCACTTCAGCGGAATTCA+TGG | - | chr4.3:28267861-28267880 | MS.gene96780:CDS | 45.0% | |
| TCTGGCAAACTCCTTAAAGG+CGG | - | chr4.3:28268392-28268411 | MS.gene96780:CDS | 45.0% | |
| TGACAAACTTCTGAACTCGG+AGG | - | chr4.3:28268685-28268704 | MS.gene96780:CDS | 45.0% | |
| TGATACTTCATGACTGGCAG+AGG | - | chr4.3:28268444-28268463 | MS.gene96780:CDS | 45.0% | |
| TGGGAGCAGTATCAACTATC+AGG | - | chr4.3:28266814-28266833 | MS.gene96780:CDS | 45.0% | |
| TTACAGGTTGCTCCAATTCC+GGG | - | chr4.3:28268113-28268132 | MS.gene96780:CDS | 45.0% | |
| TTCCGGGGGAAACAAAAGTT+TGG | - | chr4.3:28268129-28268148 | MS.gene96780:CDS | 45.0% | |
| TTGTTGTGGTAGACAACTCC+TGG | + | chr4.3:28268197-28268216 | None:intergenic | 45.0% | |
| TTTGCAGCAGTCATAAGGTC+AGG | + | chr4.3:28268422-28268441 | None:intergenic | 45.0% | |
| ! | TTGGCGTCATTAGAGTGCTT+TGG | + | chr4.3:28266691-28266710 | None:intergenic | 45.0% |
| !! | ACTTTTGTTTCCCCCGGAAT+TGG | + | chr4.3:28268128-28268147 | None:intergenic | 45.0% |
| !! | TGCCAAACTTTTGTTTCCCC+CGG | + | chr4.3:28268134-28268153 | None:intergenic | 45.0% |
| !!! | CCTTTTTTGTTCCTCCTCCA+TGG | - | chr4.3:28268477-28268496 | MS.gene96780:CDS | 45.0% |
| !!! | GGATTTTGGAGTCATTGCTG+CGG | + | chr4.3:28266714-28266733 | None:intergenic | 45.0% |
| AAACCCGATCGCCAATGGTT+CGG | - | chr4.3:28266856-28266875 | MS.gene96780:CDS | 50.0% | |
| ATTCCCGAACCATTGGCGAT+CGG | + | chr4.3:28266863-28266882 | None:intergenic | 50.0% | |
| ATTCCTGCTTGGGCAACGAA+AGG | - | chr4.3:28267390-28267409 | MS.gene96780:intron | 50.0% | |
| CAGGCATCTGCTGCCATTAA+AGG | - | chr4.3:28268572-28268591 | MS.gene96780:CDS | 50.0% | |
| CTTTAATGGCAGCAGATGCC+TGG | + | chr4.3:28268574-28268593 | None:intergenic | 50.0% | |
| GAACAGCTTACTTCTGCAGC+TGG | - | chr4.3:28268767-28268786 | MS.gene96780:CDS | 50.0% | |
| GAATCAAACCCGATCGCCAA+TGG | - | chr4.3:28266851-28266870 | MS.gene96780:CDS | 50.0% | |
| GCTCCTTCTTCACACGTTTC+AGG | + | chr4.3:28268301-28268320 | None:intergenic | 50.0% | |
| GGAAGACCTGTCCAAGTATG+AGG | - | chr4.3:28268502-28268521 | MS.gene96780:CDS | 50.0% | |
| GGCAACGAAAGGATGGCTTA+GGG | - | chr4.3:28267401-28267420 | MS.gene96780:intron | 50.0% | |
| GGTCCTGAAACGTGTGAAGA+AGG | - | chr4.3:28268295-28268314 | MS.gene96780:CDS | 50.0% | |
| GGTGAACCCTAGATTGCTTC+TGG | + | chr4.3:28267008-28267027 | None:intergenic | 50.0% | |
| GTTTCAGGACCTCGCCTATA+TGG | + | chr4.3:28268286-28268305 | None:intergenic | 50.0% | |
| TACAGGTTGCTCCAATTCCG+GGG | - | chr4.3:28268114-28268133 | MS.gene96780:CDS | 50.0% | |
| TAGGCTCCTCATACTTGGAC+AGG | + | chr4.3:28268511-28268530 | None:intergenic | 50.0% | |
| TCAGCGGAATTCATGGCGAT+GGG | - | chr4.3:28267868-28267887 | MS.gene96780:CDS | 50.0% | |
| TCGGGTTTGATTCTCGTGGA+TGG | + | chr4.3:28266844-28266863 | None:intergenic | 50.0% | |
| TGAGGCAGTTGACCATAACC+AGG | - | chr4.3:28268553-28268572 | MS.gene96780:CDS | 50.0% | |
| TTCAGCGGAATTCATGGCGA+TGG | - | chr4.3:28267867-28267886 | MS.gene96780:CDS | 50.0% | |
| ! | GAGAGAAGCGTGAATGTCTC+CGG | - | chr4.3:28266661-28266680 | MS.gene96780:CDS | 50.0% |
| ! | TGTTAGGGAAAGCACAGCAC+TGG | - | chr4.3:28267907-28267926 | MS.gene96780:CDS | 50.0% |
| ! | TTTGGAGTCATTGCTGCGGT+TGG | + | chr4.3:28266710-28266729 | None:intergenic | 50.0% |
| ! | TTTTGTTCCTCCTCCATGGC+TGG | - | chr4.3:28268481-28268500 | MS.gene96780:CDS | 50.0% |
| AAACCCGTCCGCAACCGTAA+GGG | - | chr4.3:28266781-28266800 | MS.gene96780:CDS | 55.0% | |
| AACCCGATCGCCAATGGTTC+GGG | - | chr4.3:28266857-28266876 | MS.gene96780:CDS | 55.0% | |
| ACAGGTTGCTCCAATTCCGG+GGG | - | chr4.3:28268115-28268134 | MS.gene96780:CDS | 55.0% | |
| ACCGTAAGGGCCGTGTCTTA+TGG | - | chr4.3:28266794-28266813 | MS.gene96780:CDS | 55.0% | |
| AGATGTTGTGCTGAAGGGCG+TGG | - | chr4.3:28268229-28268248 | MS.gene96780:CDS | 55.0% | |
| CATCCTTTCGTTGCCCAAGC+AGG | + | chr4.3:28267396-28267415 | None:intergenic | 55.0% | |
| CCCATAAGACACGGCCCTTA+CGG | + | chr4.3:28266798-28266817 | None:intergenic | 55.0% | |
| CCGTAAGGGCCGTGTCTTAT+GGG | - | chr4.3:28266795-28266814 | MS.gene96780:CDS | 55.0% | |
| CGTGAGGATTCCCGAACCAT+TGG | + | chr4.3:28266870-28266889 | None:intergenic | 55.0% | |
| CTGCTTGGGCAACGAAAGGA+TGG | - | chr4.3:28267394-28267413 | MS.gene96780:intron | 55.0% | |
| CTGTTCAGATGGAACCTCGG+TGG | + | chr4.3:28268753-28268772 | None:intergenic | 55.0% | |
| GCGATCGGGTTTGATTCTCG+TGG | + | chr4.3:28266848-28266867 | None:intergenic | 55.0% | |
| GGGCAACGAAAGGATGGCTT+AGG | - | chr4.3:28267400-28267419 | MS.gene96780:intron | 55.0% | |
| GGTCAGGTTCACCGCCTTTA+AGG | + | chr4.3:28268406-28268425 | None:intergenic | 55.0% | |
| TCAGATGGAACCTCGGTGGA+TGG | + | chr4.3:28268749-28268768 | None:intergenic | 55.0% | |
| TGCTGCTGACCATATAGGCG+AGG | - | chr4.3:28268274-28268293 | MS.gene96780:CDS | 55.0% | |
| TGGCAGCAGATGCCTGGTTA+TGG | + | chr4.3:28268568-28268587 | None:intergenic | 55.0% | |
| TTCCCGAACCATTGGCGATC+GGG | + | chr4.3:28266862-28266881 | None:intergenic | 55.0% | |
| TTGGACAGGTCTTCCAGCCA+TGG | + | chr4.3:28268497-28268516 | None:intergenic | 55.0% | |
| ! | ATGGCGATGGGAGGAGTACA+TGG | - | chr4.3:28267880-28267899 | MS.gene96780:CDS | 55.0% |
| ! | GGCTGAGCGTGACTGGATTT+TGG | + | chr4.3:28266728-28266747 | None:intergenic | 55.0% |
| AGACACGGCCCTTACGGTTG+CGG | + | chr4.3:28266792-28266811 | None:intergenic | 60.0% | |
| AGGTCTTCCAGCCATGGAGG+AGG | + | chr4.3:28268491-28268510 | None:intergenic | 60.0% | |
| CAAACCCGTCCGCAACCGTA+AGG | - | chr4.3:28266780-28266799 | MS.gene96780:CDS | 60.0% | |
| CGTCTTGAGACGGCGAACAG+TGG | + | chr4.3:28266752-28266771 | None:intergenic | 60.0% | |
| CTTGAGACGGCGAACAGTGG+CGG | + | chr4.3:28266749-28266768 | None:intergenic | 60.0% | |
| GACAGGTCTTCCAGCCATGG+AGG | + | chr4.3:28268494-28268513 | None:intergenic | 60.0% | |
| GCGGAATTCATGGCGATGGG+AGG | - | chr4.3:28267871-28267890 | MS.gene96780:CDS | 60.0% | |
| TGAGCAGGATCCATCCACCG+AGG | - | chr4.3:28268736-28268755 | MS.gene96780:CDS | 60.0% | |
| ! | CTTACGGTTGCGGACGGGTT+TGG | + | chr4.3:28266782-28266801 | None:intergenic | 60.0% |
| ACGGCCCTTACGGTTGCGGA+CGG | + | chr4.3:28266788-28266807 | None:intergenic | 65.0% | |
| CAGTGGCGGCTGAGCGTGAC+TGG | + | chr4.3:28266735-28266754 | None:intergenic | 70.0% | |
| CGGCCCTTACGGTTGCGGAC+GGG | + | chr4.3:28266787-28266806 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 28266646 | 28268802 | 28266646 | ID=MS.gene96780 |
| chr4.3 | mRNA | 28266646 | 28268802 | 28266646 | ID=MS.gene96780.t1;Parent=MS.gene96780 |
| chr4.3 | exon | 28267825 | 28268802 | 28267825 | ID=MS.gene96780.t1.exon1;Parent=MS.gene96780.t1 |
| chr4.3 | CDS | 28267825 | 28268802 | 28267825 | ID=cds.MS.gene96780.t1;Parent=MS.gene96780.t1 |
| chr4.3 | exon | 28266646 | 28267329 | 28266646 | ID=MS.gene96780.t1.exon2;Parent=MS.gene96780.t1 |
| chr4.3 | CDS | 28266646 | 28267329 | 28266646 | ID=cds.MS.gene96780.t1;Parent=MS.gene96780.t1 |
| Gene Sequence |
| Protein sequence |
