AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006800.t1 MTR_4g081850 92.540 563 32 1 1 553 1 563 0.0 1042
MS.gene006800.t1 MTR_2g079510 88.770 561 55 2 1 553 1 561 0.0 1021
MS.gene006800.t1 MTR_1g048030 38.676 287 153 3 189 452 125 411 2.79e-58 204
MS.gene006800.t1 MTR_4g050490 30.240 334 161 9 185 454 150 475 8.01e-34 135
MS.gene006800.t1 MTR_5g010400 66.667 72 24 0 7 78 14 85 2.79e-24 97.1
MS.gene006800.t1 MTR_7g094890 25.843 267 166 8 198 445 110 363 2.10e-15 78.6
MS.gene006800.t1 MTR_2g079540 70.000 50 13 1 7 54 15 64 1.17e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006800.t1 AT1G52980 72.263 548 136 3 4 535 3 550 0.0 786
MS.gene006800.t1 AT3G07050 35.714 308 174 2 169 452 100 407 4.24e-61 212
MS.gene006800.t1 AT2G27200 30.031 323 169 6 185 452 149 469 1.38e-36 143
MS.gene006800.t1 AT1G08410 27.614 373 201 8 185 490 149 519 1.69e-35 140
MS.gene006800.t1 AT4G02790 26.115 314 198 9 155 447 64 364 1.62e-17 85.1

Find 126 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTTGCAATACCTTTAA+TGG 0.138476 4.1:+25104579 None:intergenic
CTTTCAAATGCTTCTCTAAA+TGG 0.150218 4.1:+25105847 None:intergenic
GGTCAGGTTCACCGCCTTTA+AGG 0.208215 4.1:+25104761 None:intergenic
GCAAGCATTAATAAGTCTTT+TGG 0.224309 4.1:-25105705 MS.gene006800:CDS
CTTACAGGTTGCTCCAATTC+CGG 0.231915 4.1:-25105052 MS.gene006800:intron
CAGGCATCTGCTGCCATTAA+AGG 0.234669 4.1:-25104592 MS.gene006800:CDS
TCATCTGGCAAACTCCTTAA+AGG 0.256903 4.1:-25104775 MS.gene006800:CDS
ATATAATGAGAATGAGTTAA+AGG 0.292360 4.1:-25104512 MS.gene006800:CDS
GGCTGAGCGTGACTGGATTT+TGG 0.293828 4.1:+25106439 None:intergenic
AAGAAAACGTCCAAGTCTTT+TGG 0.296672 4.1:-25106090 MS.gene006800:CDS
AACCCGATCGCCAATGGTTC+GGG 0.298498 4.1:-25106307 MS.gene006800:CDS
TATGAGGAGCCTAATGTTAA+TGG 0.328014 4.1:-25104646 MS.gene006800:CDS
ATTAGAGTGCTTTGGTTTAC+CGG 0.328797 4.1:+25106484 None:intergenic
ACCGTAAGGGCCGTGTCTTA+TGG 0.341749 4.1:-25106370 MS.gene006800:CDS
CTTACGGTTGCGGACGGGTT+TGG 0.345951 4.1:+25106385 None:intergenic
ATGATTACCAGAAGCAATCT+AGG 0.346051 4.1:-25106166 MS.gene006800:CDS
CCGTAAGGGCCGTGTCTTAT+GGG 0.347948 4.1:-25106369 MS.gene006800:CDS
TTACAGGTTGCTCCAATTCC+GGG 0.351375 4.1:-25105051 MS.gene006800:intron
CAGTGGCGGCTGAGCGTGAC+TGG 0.355736 4.1:+25106432 None:intergenic
ACAGATGACTTCCCAACATT+TGG 0.356765 4.1:+25105597 None:intergenic
AAACCCGATCGCCAATGGTT+CGG 0.366201 4.1:-25106308 MS.gene006800:CDS
TATAATGAGAATGAGTTAAA+GGG 0.392821 4.1:-25104511 MS.gene006800:CDS
GGTGAACCCTAGATTGCTTC+TGG 0.393253 4.1:+25106159 None:intergenic
GGGCAACGAAAGGATGGCTT+AGG 0.399832 4.1:-25105764 MS.gene006800:CDS
TTCTTCAGATGTTGTTGTGC+AGG 0.401568 4.1:-25105907 MS.gene006800:CDS
AACATTAGGCTCCTCATACT+TGG 0.402135 4.1:+25104651 None:intergenic
GTTTCAGAACCTCGCCTATA+TGG 0.402474 4.1:+25104881 None:intergenic
TTCCCGAACCATTGGCGATC+GGG 0.409646 4.1:+25106305 None:intergenic
GAAACTCGTTATTCATTTGT+TGG 0.421464 4.1:+25104372 None:intergenic
CCCATAAGACACGGCCCTTA+CGG 0.423389 4.1:+25106369 None:intergenic
CTTCAGCTTTGCAAATCATC+TGG 0.430614 4.1:-25104790 MS.gene006800:CDS
AAACTCGTTATTCATTTGTT+GGG 0.434048 4.1:+25104373 None:intergenic
ACATCAATGCCATTAACATT+AGG 0.437807 4.1:+25104637 None:intergenic
AAAGATGCTGCTGACCATAT+AGG 0.439860 4.1:-25104895 MS.gene006800:CDS
TGGAAAGGGTTCACTTCTAT+CGG 0.440433 4.1:-25105685 MS.gene006800:CDS
TGGCAGCAGATGCCTGGTTA+TGG 0.442559 4.1:+25104599 None:intergenic
TTGGCGTCATTAGAGTGCTT+TGG 0.444184 4.1:+25106476 None:intergenic
AGGGTCAAAGCAAACGCATA+TGG 0.452368 4.1:-25105953 MS.gene006800:CDS
TTTGTTGGATATCCAAATGT+TGG 0.456100 4.1:-25105609 MS.gene006800:CDS
GCGACATACCATGTTTGAAA+AGG 0.465171 4.1:-25105973 MS.gene006800:CDS
TTTGGAGTCATTGCTGCGGT+TGG 0.465405 4.1:+25106457 None:intergenic
TTATATAAATCACCTTGAAC+TGG 0.466516 4.1:+25104529 None:intergenic
TTGTTGGATATCCAAATGTT+GGG 0.472784 4.1:-25105608 MS.gene006800:CDS
CAACAAAGTGTACCAGTTCA+AGG 0.472963 4.1:-25104541 MS.gene006800:CDS
GGGTCAAAGCAAACGCATAT+GGG 0.476137 4.1:-25105952 MS.gene006800:CDS
GTGTGATCTAATTCCTGCTT+GGG 0.482321 4.1:-25105784 MS.gene006800:CDS
CTTTAATGGCAGCAGATGCC+TGG 0.487148 4.1:+25104593 None:intergenic
TCATCTTTGCAGCAGTCATA+AGG 0.488979 4.1:+25104740 None:intergenic
GGAAGACCTGTCCAAGTATG+AGG 0.491469 4.1:-25104662 MS.gene006800:CDS
AAGACTTATTAATGCTTGCA+TGG 0.501286 4.1:+25105709 None:intergenic
TAATTATAATGTTATCATCA+AGG 0.504072 4.1:-25106216 MS.gene006800:CDS
GAAAGTAATGAAGCTGATGA+TGG 0.504709 4.1:-25106011 MS.gene006800:CDS
CATCCTTTCGTTGCCCAAGC+AGG 0.506924 4.1:+25105771 None:intergenic
CGGCCCTTACGGTTGCGGAC+GGG 0.508314 4.1:+25106380 None:intergenic
TTGTTGTGGTAGACAACTCC+TGG 0.509529 4.1:+25104970 None:intergenic
TAATCAGAAGCCAAAAGACT+TGG 0.511610 4.1:+25106080 None:intergenic
GAGAGAAGCGTGAATGTCTC+CGG 0.514912 4.1:-25106503 MS.gene006800:CDS
CAAACCCGTCCGCAACCGTA+AGG 0.516484 4.1:-25106384 MS.gene006800:CDS
GGTTCTGAAACGTGTGAAGA+AGG 0.518306 4.1:-25104869 MS.gene006800:CDS
CGTGAGGATTCCCGAACCAT+TGG 0.518846 4.1:+25106297 None:intergenic
CTGCTTGGGCAACGAAAGGA+TGG 0.519512 4.1:-25105770 MS.gene006800:CDS
CGACATACCATGTTTGAAAA+GGG 0.520906 4.1:-25105972 MS.gene006800:CDS
AGACACGGCCCTTACGGTTG+CGG 0.521696 4.1:+25106375 None:intergenic
TCGGGTTTGATTCTCGTGGA+TGG 0.524475 4.1:+25106323 None:intergenic
GTTTGATTCTCGTGGATGGA+AGG 0.525191 4.1:+25106327 None:intergenic
TTTGCAGCAGTCATAAGGTC+AGG 0.530012 4.1:+25104745 None:intergenic
AATTATAATGTTATCATCAA+GGG 0.531967 4.1:-25106215 MS.gene006800:CDS
AGCCTATAAAATAAAAGAGT+GGG 0.532348 4.1:-25104833 MS.gene006800:CDS
GAATCAAACCCGATCGCCAA+TGG 0.532452 4.1:-25106313 MS.gene006800:CDS
CAAAGATGATACTTCATGAC+TGG 0.544123 4.1:-25104726 MS.gene006800:CDS
GGCAACGAAAGGATGGCTTA+GGG 0.546997 4.1:-25105763 MS.gene006800:CDS
TGCTGACAAACTTCTGAACT+CGG 0.547967 4.1:-25104482 MS.gene006800:CDS
AGTGTGATCTAATTCCTGCT+TGG 0.549217 4.1:-25105785 MS.gene006800:CDS
GAGCCTATAAAATAAAAGAG+TGG 0.550840 4.1:-25104834 MS.gene006800:CDS
ATTCCCGAACCATTGGCGAT+CGG 0.551780 4.1:+25106304 None:intergenic
ACGGCCCTTACGGTTGCGGA+CGG 0.551921 4.1:+25106379 None:intergenic
TGAAACAGATGTTGTGCTGA+AGG 0.552137 4.1:-25104941 MS.gene006800:CDS
TGATACTTCATGACTGGCAG+AGG 0.552770 4.1:-25104720 MS.gene006800:CDS
GAACAGCTTACTTCTGCAGC+TGG 0.555564 4.1:-25104397 MS.gene006800:CDS
TCAGATGGAACCTCGGTGGA+TGG 0.556459 4.1:+25104418 None:intergenic
TTGTGCAGGTTATAGATGCA+AGG 0.560683 4.1:-25105893 MS.gene006800:CDS
CATATGGGGTGAACTCTACA+AGG 0.561859 4.1:-25105937 MS.gene006800:CDS
ATGATTTGCAAAGCTGAAGT+AGG 0.563324 4.1:+25104794 None:intergenic
TGGTAACATCTTGTACCTTG+TGG 0.564112 4.1:+25105867 None:intergenic
TAGGCTCCTCATACTTGGAC+AGG 0.566773 4.1:+25104656 None:intergenic
TTGGACAGGTCTTCCAGCCA+TGG 0.567698 4.1:+25104670 None:intergenic
AGATAGCGACACATTTGAGC+AGG 0.568986 4.1:-25104443 MS.gene006800:CDS
TCTTTCTGATTCACAACGTG+AGG 0.569890 4.1:+25106281 None:intergenic
TACAGGTTGCTCCAATTCCG+GGG 0.570126 4.1:-25105050 MS.gene006800:intron
GCGTACTAAGAATGTTTGCA+AGG 0.578208 4.1:-25105562 MS.gene006800:intron
GCAGAAGTAAGCTGTTCAGA+TGG 0.582024 4.1:+25104403 None:intergenic
CTTGCATGGAATGCTAGAGT+TGG 0.588926 4.1:+25105723 None:intergenic
TCTTTAGCTAAGAAAGCTGA+TGG 0.590099 4.1:-25106053 MS.gene006800:CDS
GCGATCGGGTTTGATTCTCG+TGG 0.591809 4.1:+25106319 None:intergenic
AGGTCTTCCAGCCATGGAGG+AGG 0.591963 4.1:+25104676 None:intergenic
TGGTATTGTACGTCTTGAGA+CGG 0.597906 4.1:+25106405 None:intergenic
ATTCCTGCTTGGGCAACGAA+AGG 0.599291 4.1:-25105774 MS.gene006800:CDS
TGATTACCAGAAGCAATCTA+GGG 0.600894 4.1:-25106165 MS.gene006800:CDS
CTTGAGACGGCGAACAGTGG+CGG 0.602056 4.1:+25106418 None:intergenic
AAACCCGTCCGCAACCGTAA+GGG 0.603072 4.1:-25106383 MS.gene006800:CDS
GATAAACAAGCAATATCTGT+CGG 0.606616 4.1:-25105633 MS.gene006800:CDS
GTAATCATTGAGAAGCGACA+TGG 0.608065 4.1:+25106181 None:intergenic
TGTGCAGGTTATAGATGCAA+GGG 0.613175 4.1:-25105892 MS.gene006800:CDS
GATACTTCATGACTGGCAGA+GGG 0.617838 4.1:-25104719 MS.gene006800:CDS
ATTATAATGTTATCATCAAG+GGG 0.619969 4.1:-25106214 MS.gene006800:CDS
AGTATATAACCCTTACAAAG+AGG 0.626422 4.1:-25105011 MS.gene006800:CDS
GAAACAGATGTTGTGCTGAA+GGG 0.627267 4.1:-25104940 MS.gene006800:CDS
AGATGTTGTGCTGAAGGGCG+TGG 0.627685 4.1:-25104935 MS.gene006800:CDS
CTGTTTCAGAGTCATTGTTG+TGG 0.635053 4.1:+25104956 None:intergenic
GGTCAAAGCAAACGCATATG+GGG 0.635960 4.1:-25105951 MS.gene006800:CDS
GACAGGTCTTCCAGCCATGG+AGG 0.641023 4.1:+25104673 None:intergenic
TGAGGCAGTTGACCATAACC+AGG 0.646672 4.1:-25104611 MS.gene006800:CDS
TGCTGCTGACCATATAGGCG+AGG 0.647460 4.1:-25104890 MS.gene006800:CDS
AAATTGCAAGCACAAACACA+TGG 0.648597 4.1:-25105823 MS.gene006800:CDS
CGTCTTGAGACGGCGAACAG+TGG 0.652459 4.1:+25106415 None:intergenic
ACAGGTTGCTCCAATTCCGG+GGG 0.652730 4.1:-25105049 MS.gene006800:intron
TAATGGCATTGATGTTGATG+AGG 0.665181 4.1:-25104629 MS.gene006800:CDS
TAATCATTGAGAAGCGACAT+GGG 0.665391 4.1:+25106182 None:intergenic
CTGTTCAGATGGAACCTCGG+TGG 0.679880 4.1:+25104414 None:intergenic
AAGCTGTTCAGATGGAACCT+CGG 0.685311 4.1:+25104411 None:intergenic
TGACAAACTTCTGAACTCGG+AGG 0.694828 4.1:-25104479 MS.gene006800:CDS
TCTGGCAAACTCCTTAAAGG+CGG 0.702803 4.1:-25104772 MS.gene006800:CDS
GATACTGCTCCCATAAGACA+CGG 0.708733 4.1:+25106360 None:intergenic
ATACTTCATGACTGGCAGAG+GGG 0.723483 4.1:-25104718 MS.gene006800:CDS
TGAGCAGGATCCATCCACCG+AGG 0.767844 4.1:-25104428 MS.gene006800:CDS
ATAGATGCAAGGGATCCACA+AGG 0.773503 4.1:-25105882 MS.gene006800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATTAATTATTCTTAC+AGG - chr4.1:25105835-25105854 MS.gene006800:CDS 10.0%
!! TTAATAATATAATTGCTTTA+TGG + chr4.1:25105825-25105844 None:intergenic 10.0%
!! AATTATAATGTTATCATCAA+GGG - chr4.1:25104687-25104706 MS.gene006800:CDS 15.0%
!! TAATTATAATGTTATCATCA+AGG - chr4.1:25104686-25104705 MS.gene006800:CDS 15.0%
!! AATATTTGCAATACCTTTAA+TGG + chr4.1:25106326-25106345 None:intergenic 20.0%
!! ATATAATGAGAATGAGTTAA+AGG - chr4.1:25106390-25106409 MS.gene006800:CDS 20.0%
!! ATTATAATGTTATCATCAAG+GGG - chr4.1:25104688-25104707 MS.gene006800:CDS 20.0%
!! TATAATGAGAATGAGTTAAA+GGG - chr4.1:25106391-25106410 MS.gene006800:CDS 20.0%
!! TTAGATGTAATTATAGAAAG+AGG - chr4.1:25105505-25105524 MS.gene006800:intron 20.0%
!!! AAACATTCGCTATAATTTTT+TGG + chr4.1:25105545-25105564 None:intergenic 20.0%
!!! ATTAATAAGTCTTTTGGAAA+GGG - chr4.1:25105203-25105222 MS.gene006800:intron 20.0%
! AATCAAAATTCTCACTTAAG+CGG - chr4.1:25105590-25105609 MS.gene006800:CDS 25.0%
! AATTACTAACTAATGCACAA+AGG + chr4.1:25105477-25105496 None:intergenic 25.0%
! AGCCTATAAAATAAAAGAGT+GGG - chr4.1:25106069-25106088 MS.gene006800:CDS 25.0%
! ATTATTCATGTGAATGTGAA+AGG + chr4.1:25105781-25105800 None:intergenic 25.0%
! TTATATAAATCACCTTGAAC+TGG + chr4.1:25106376-25106395 None:intergenic 25.0%
!!! AACCCACTCTTTTATTTTAT+AGG + chr4.1:25106074-25106093 None:intergenic 25.0%
!!! AGAGTTTTTTAGAGAAGAAA+TGG - chr4.1:25104647-25104666 MS.gene006800:CDS 25.0%
!!! CATTAATAAGTCTTTTGGAA+AGG - chr4.1:25105202-25105221 MS.gene006800:intron 25.0%
AAAAAGGTTCTCTATCAAGA+AGG + chr4.1:25104767-25104786 None:intergenic 30.0%
AAGACTTATTAATGCTTGCA+TGG + chr4.1:25105196-25105215 None:intergenic 30.0%
ACATCAATGCCATTAACATT+AGG + chr4.1:25106268-25106287 None:intergenic 30.0%
AGTATATAACCCTTACAAAG+AGG - chr4.1:25105891-25105910 MS.gene006800:CDS 30.0%
CAAAAAGATCCTCTTTGTAA+GGG + chr4.1:25105903-25105922 None:intergenic 30.0%
CTATATATATCGCGAAAAAG+TGG + chr4.1:25105688-25105707 None:intergenic 30.0%
CTTTCAAATGCTTCTCTAAA+TGG + chr4.1:25105058-25105077 None:intergenic 30.0%
GAGCCTATAAAATAAAAGAG+TGG - chr4.1:25106068-25106087 MS.gene006800:CDS 30.0%
GATAAACAAGCAATATCTGT+CGG - chr4.1:25105269-25105288 MS.gene006800:intron 30.0%
TCAAAAAGATCCTCTTTGTA+AGG + chr4.1:25105904-25105923 None:intergenic 30.0%
TGTTGCATATATTCATCAAG+AGG + chr4.1:25105738-25105757 None:intergenic 30.0%
TTGTTGGATATCCAAATGTT+GGG - chr4.1:25105294-25105313 MS.gene006800:intron 30.0%
TTTATGGTGACTCATATGTA+AGG + chr4.1:25105809-25105828 None:intergenic 30.0%
TTTGTTGGATATCCAAATGT+TGG - chr4.1:25105293-25105312 MS.gene006800:intron 30.0%
! GCAAGCATTAATAAGTCTTT+TGG - chr4.1:25105197-25105216 MS.gene006800:intron 30.0%
!! ATCTTTTTGATTGATTGTCC+AGG - chr4.1:25105914-25105933 MS.gene006800:CDS 30.0%
!! GCTTAAGTGAGAATTTTGAT+TGG + chr4.1:25105591-25105610 None:intergenic 30.0%
AAATTGCAAGCACAAACACA+TGG - chr4.1:25105079-25105098 MS.gene006800:intron 35.0%
ATGATTACCAGAAGCAATCT+AGG - chr4.1:25104736-25104755 MS.gene006800:CDS 35.0%
CAAAGATGATACTTCATGAC+TGG - chr4.1:25106176-25106195 MS.gene006800:CDS 35.0%
CGACATACCATGTTTGAAAA+GGG - chr4.1:25104930-25104949 MS.gene006800:CDS 35.0%
GAAAGTAATGAAGCTGATGA+TGG - chr4.1:25104891-25104910 MS.gene006800:CDS 35.0%
TAATCAGAAGCCAAAAGACT+TGG + chr4.1:25104825-25104844 None:intergenic 35.0%
TAATCATTGAGAAGCGACAT+GGG + chr4.1:25104723-25104742 None:intergenic 35.0%
TATGAGGAGCCTAATGTTAA+TGG - chr4.1:25106256-25106275 MS.gene006800:CDS 35.0%
TCTTTAGCTAAGAAAGCTGA+TGG - chr4.1:25104849-25104868 MS.gene006800:CDS 35.0%
TGATTACCAGAAGCAATCTA+GGG - chr4.1:25104737-25104756 MS.gene006800:CDS 35.0%
! AAGAAAACGTCCAAGTCTTT+TGG - chr4.1:25104812-25104831 MS.gene006800:CDS 35.0%
! ATGATTTGCAAAGCTGAAGT+AGG + chr4.1:25106111-25106130 None:intergenic 35.0%
! ATTAGAGTGCTTTGGTTTAC+CGG + chr4.1:25104421-25104440 None:intergenic 35.0%
! TTTGATTGGTCAACTGGTAA+TGG + chr4.1:25105577-25105596 None:intergenic 35.0%
!! GGACGTTTTCTTTTAGTCTT+AGG + chr4.1:25104804-25104823 None:intergenic 35.0%
!! TAATGGCATTGATGTTGATG+AGG - chr4.1:25106273-25106292 MS.gene006800:CDS 35.0%
!!! GAGAATTTTGATTGGTCAAC+TGG + chr4.1:25105583-25105602 None:intergenic 35.0%
AAAGATGCTGCTGACCATAT+AGG - chr4.1:25106007-25106026 MS.gene006800:CDS 40.0%
AACATTAGGCTCCTCATACT+TGG + chr4.1:25106254-25106273 None:intergenic 40.0%
ACAGATGACTTCCCAACATT+TGG + chr4.1:25105308-25105327 None:intergenic 40.0%
AGTGTGATCTAATTCCTGCT+TGG - chr4.1:25105117-25105136 MS.gene006800:intron 40.0%
CAACAAAGTGTACCAGTTCA+AGG - chr4.1:25106361-25106380 MS.gene006800:CDS 40.0%
CATGGAGGAGGAACAAAAAA+GGG + chr4.1:25106217-25106236 None:intergenic 40.0%
CTGTTTCAGAGTCATTGTTG+TGG + chr4.1:25105949-25105968 None:intergenic 40.0%
CTTCAGCTTTGCAAATCATC+TGG - chr4.1:25106112-25106131 MS.gene006800:CDS 40.0%
GAAACAGATGTTGTGCTGAA+GGG - chr4.1:25105962-25105981 MS.gene006800:CDS 40.0%
GCGACATACCATGTTTGAAA+AGG - chr4.1:25104929-25104948 MS.gene006800:CDS 40.0%
GCGTACTAAGAATGTTTGCA+AGG - chr4.1:25105340-25105359 MS.gene006800:intron 40.0%
GGAGTACATGGAAGTTGTTA+GGG - chr4.1:25105630-25105649 MS.gene006800:CDS 40.0%
GGTGCACGTGAATTTCTATA+AGG + chr4.1:25105717-25105736 None:intergenic 40.0%
GTAATCATTGAGAAGCGACA+TGG + chr4.1:25104724-25104743 None:intergenic 40.0%
GTGTGATCTAATTCCTGCTT+GGG - chr4.1:25105118-25105137 MS.gene006800:intron 40.0%
TCATCTGGCAAACTCCTTAA+AGG - chr4.1:25106127-25106146 MS.gene006800:CDS 40.0%
TCATCTTTGCAGCAGTCATA+AGG + chr4.1:25106165-25106184 None:intergenic 40.0%
TCTCACTTAAGCGGAATTCA+TGG - chr4.1:25105599-25105618 MS.gene006800:CDS 40.0%
TCTTTCTGATTCACAACGTG+AGG + chr4.1:25104624-25104643 None:intergenic 40.0%
TGAAACAGATGTTGTGCTGA+AGG - chr4.1:25105961-25105980 MS.gene006800:CDS 40.0%
TGCTGACAAACTTCTGAACT+CGG - chr4.1:25106420-25106439 MS.gene006800:CDS 40.0%
TGGAAAGGGTTCACTTCTAT+CGG - chr4.1:25105217-25105236 MS.gene006800:intron 40.0%
TGGTAACATCTTGTACCTTG+TGG + chr4.1:25105038-25105057 None:intergenic 40.0%
TGGTATTGTACGTCTTGAGA+CGG + chr4.1:25104500-25104519 None:intergenic 40.0%
TGTGCAGGTTATAGATGCAA+GGG - chr4.1:25105010-25105029 MS.gene006800:CDS 40.0%
TTCTTCAGATGTTGTTGTGC+AGG - chr4.1:25104995-25105014 MS.gene006800:CDS 40.0%
TTGTGCAGGTTATAGATGCA+AGG - chr4.1:25105009-25105028 MS.gene006800:CDS 40.0%
! AGGAGTACATGGAAGTTGTT+AGG - chr4.1:25105629-25105648 MS.gene006800:CDS 40.0%
! GCTTTGACCCTTTTCAAACA+TGG + chr4.1:25104940-25104959 None:intergenic 40.0%
!!! CGGTTTTGAGACAATTTGCA+AGG - chr4.1:25105237-25105256 MS.gene006800:intron 40.0%
!!! GAACCTTTTTTGCATGCGTT+TGG - chr4.1:25104777-25104796 MS.gene006800:CDS 40.0%
!!! GCAATATCTGTCGGTTTTGT+TGG - chr4.1:25105278-25105297 MS.gene006800:intron 40.0%
AAGCTGTTCAGATGGAACCT+CGG + chr4.1:25106494-25106513 None:intergenic 45.0%
AGATAGCGACACATTTGAGC+AGG - chr4.1:25106459-25106478 MS.gene006800:CDS 45.0%
AGGGTCAAAGCAAACGCATA+TGG - chr4.1:25104949-25104968 MS.gene006800:CDS 45.0%
ATACTTCATGACTGGCAGAG+GGG - chr4.1:25106184-25106203 MS.gene006800:CDS 45.0%
ATAGATGCAAGGGATCCACA+AGG - chr4.1:25105020-25105039 MS.gene006800:CDS 45.0%
CATATGGGGTGAACTCTACA+AGG - chr4.1:25104965-25104984 MS.gene006800:CDS 45.0%
CCATGGAGGAGGAACAAAAA+AGG + chr4.1:25106218-25106237 None:intergenic 45.0%
CTTACAGGTTGCTCCAATTC+CGG - chr4.1:25105850-25105869 MS.gene006800:CDS 45.0%
CTTGCATGGAATGCTAGAGT+TGG + chr4.1:25105182-25105201 None:intergenic 45.0%
GATACTGCTCCCATAAGACA+CGG + chr4.1:25104545-25104564 None:intergenic 45.0%
GATACTTCATGACTGGCAGA+GGG - chr4.1:25106183-25106202 MS.gene006800:CDS 45.0%
GCAGAAGTAAGCTGTTCAGA+TGG + chr4.1:25106502-25106521 None:intergenic 45.0%
GGGTCAAAGCAAACGCATAT+GGG - chr4.1:25104950-25104969 MS.gene006800:CDS 45.0%
GGTCAAAGCAAACGCATATG+GGG - chr4.1:25104951-25104970 MS.gene006800:CDS 45.0%
GGTCCAAACGCATGCAAAAA+AGG + chr4.1:25104783-25104802 None:intergenic 45.0%
GTTTCAGAACCTCGCCTATA+TGG + chr4.1:25106024-25106043 None:intergenic 45.0%
GTTTGATTCTCGTGGATGGA+AGG + chr4.1:25104578-25104597 None:intergenic 45.0%
TAAGCGGAATTCATGGCGAT+GGG - chr4.1:25105606-25105625 MS.gene006800:CDS 45.0%
TCTGGCAAACTCCTTAAAGG+CGG - chr4.1:25106130-25106149 MS.gene006800:CDS 45.0%
TGACAAACTTCTGAACTCGG+AGG - chr4.1:25106423-25106442 MS.gene006800:CDS 45.0%
TGATACTTCATGACTGGCAG+AGG - chr4.1:25106182-25106201 MS.gene006800:CDS 45.0%
TTAAGCGGAATTCATGGCGA+TGG - chr4.1:25105605-25105624 MS.gene006800:CDS 45.0%
TTACAGGTTGCTCCAATTCC+GGG - chr4.1:25105851-25105870 MS.gene006800:CDS 45.0%
TTCCGGGGGAAACAAAAGTT+TGG - chr4.1:25105867-25105886 MS.gene006800:CDS 45.0%
TTGTTGTGGTAGACAACTCC+TGG + chr4.1:25105935-25105954 None:intergenic 45.0%
TTTGCAGCAGTCATAAGGTC+AGG + chr4.1:25106160-25106179 None:intergenic 45.0%
! TTGGCGTCATTAGAGTGCTT+TGG + chr4.1:25104429-25104448 None:intergenic 45.0%
!! ACTTTTGTTTCCCCCGGAAT+TGG + chr4.1:25105866-25105885 None:intergenic 45.0%
!! GGTTCTGAAACGTGTGAAGA+AGG - chr4.1:25106033-25106052 MS.gene006800:CDS 45.0%
!! TGCCAAACTTTTGTTTCCCC+CGG + chr4.1:25105872-25105891 None:intergenic 45.0%
!!! CCTTTTTTGTTCCTCCTCCA+TGG - chr4.1:25106215-25106234 MS.gene006800:CDS 45.0%
!!! GGATTTTGGAGTCATTGCTG+CGG + chr4.1:25104452-25104471 None:intergenic 45.0%
AAACCCGATCGCCAATGGTT+CGG - chr4.1:25104594-25104613 MS.gene006800:CDS 50.0%
ATTCCCGAACCATTGGCGAT+CGG + chr4.1:25104601-25104620 None:intergenic 50.0%
ATTCCTGCTTGGGCAACGAA+AGG - chr4.1:25105128-25105147 MS.gene006800:intron 50.0%
CAGGCATCTGCTGCCATTAA+AGG - chr4.1:25106310-25106329 MS.gene006800:CDS 50.0%
CTTTAATGGCAGCAGATGCC+TGG + chr4.1:25106312-25106331 None:intergenic 50.0%
GAACAGCTTACTTCTGCAGC+TGG - chr4.1:25106505-25106524 MS.gene006800:CDS 50.0%
GAATCAAACCCGATCGCCAA+TGG - chr4.1:25104589-25104608 MS.gene006800:CDS 50.0%
GGAAGACCTGTCCAAGTATG+AGG - chr4.1:25106240-25106259 MS.gene006800:CDS 50.0%
GGCAACGAAAGGATGGCTTA+GGG - chr4.1:25105139-25105158 MS.gene006800:intron 50.0%
GGTGAACCCTAGATTGCTTC+TGG + chr4.1:25104746-25104765 None:intergenic 50.0%
TACAGGTTGCTCCAATTCCG+GGG - chr4.1:25105852-25105871 MS.gene006800:CDS 50.0%
TAGGCTCCTCATACTTGGAC+AGG + chr4.1:25106249-25106268 None:intergenic 50.0%
TCGGGTTTGATTCTCGTGGA+TGG + chr4.1:25104582-25104601 None:intergenic 50.0%
TGAGGCAGTTGACCATAACC+AGG - chr4.1:25106291-25106310 MS.gene006800:CDS 50.0%
! GAGAGAAGCGTGAATGTCTC+CGG - chr4.1:25104399-25104418 MS.gene006800:CDS 50.0%
! TGTTAGGGAAAGCACAGCAC+TGG - chr4.1:25105645-25105664 MS.gene006800:CDS 50.0%
! TTTGGAGTCATTGCTGCGGT+TGG + chr4.1:25104448-25104467 None:intergenic 50.0%
! TTTTGTTCCTCCTCCATGGC+TGG - chr4.1:25106219-25106238 MS.gene006800:CDS 50.0%
AAACCCGTCCGCAACCGTAA+GGG - chr4.1:25104519-25104538 MS.gene006800:CDS 55.0%
AACCCGATCGCCAATGGTTC+GGG - chr4.1:25104595-25104614 MS.gene006800:CDS 55.0%
ACAGGTTGCTCCAATTCCGG+GGG - chr4.1:25105853-25105872 MS.gene006800:CDS 55.0%
ACCGTAAGGGCCGTGTCTTA+TGG - chr4.1:25104532-25104551 MS.gene006800:CDS 55.0%
AGATGTTGTGCTGAAGGGCG+TGG - chr4.1:25105967-25105986 MS.gene006800:CDS 55.0%
CATCCTTTCGTTGCCCAAGC+AGG + chr4.1:25105134-25105153 None:intergenic 55.0%
CCCATAAGACACGGCCCTTA+CGG + chr4.1:25104536-25104555 None:intergenic 55.0%
CCGTAAGGGCCGTGTCTTAT+GGG - chr4.1:25104533-25104552 MS.gene006800:CDS 55.0%
CGTGAGGATTCCCGAACCAT+TGG + chr4.1:25104608-25104627 None:intergenic 55.0%
CTGCTTGGGCAACGAAAGGA+TGG - chr4.1:25105132-25105151 MS.gene006800:intron 55.0%
CTGTTCAGATGGAACCTCGG+TGG + chr4.1:25106491-25106510 None:intergenic 55.0%
GCGATCGGGTTTGATTCTCG+TGG + chr4.1:25104586-25104605 None:intergenic 55.0%
GGGCAACGAAAGGATGGCTT+AGG - chr4.1:25105138-25105157 MS.gene006800:intron 55.0%
GGTCAGGTTCACCGCCTTTA+AGG + chr4.1:25106144-25106163 None:intergenic 55.0%
TCAGATGGAACCTCGGTGGA+TGG + chr4.1:25106487-25106506 None:intergenic 55.0%
TGCTGCTGACCATATAGGCG+AGG - chr4.1:25106012-25106031 MS.gene006800:CDS 55.0%
TGGCAGCAGATGCCTGGTTA+TGG + chr4.1:25106306-25106325 None:intergenic 55.0%
TTCCCGAACCATTGGCGATC+GGG + chr4.1:25104600-25104619 None:intergenic 55.0%
TTGGACAGGTCTTCCAGCCA+TGG + chr4.1:25106235-25106254 None:intergenic 55.0%
! ATGGCGATGGGAGGAGTACA+TGG - chr4.1:25105618-25105637 MS.gene006800:CDS 55.0%
! GGCTGAGCGTGACTGGATTT+TGG + chr4.1:25104466-25104485 None:intergenic 55.0%
AGACACGGCCCTTACGGTTG+CGG + chr4.1:25104530-25104549 None:intergenic 60.0%
AGGTCTTCCAGCCATGGAGG+AGG + chr4.1:25106229-25106248 None:intergenic 60.0%
CAAACCCGTCCGCAACCGTA+AGG - chr4.1:25104518-25104537 MS.gene006800:CDS 60.0%
CGTCTTGAGACGGCGAACAG+TGG + chr4.1:25104490-25104509 None:intergenic 60.0%
CTTGAGACGGCGAACAGTGG+CGG + chr4.1:25104487-25104506 None:intergenic 60.0%
GACAGGTCTTCCAGCCATGG+AGG + chr4.1:25106232-25106251 None:intergenic 60.0%
GCGGAATTCATGGCGATGGG+AGG - chr4.1:25105609-25105628 MS.gene006800:CDS 60.0%
TGAGCAGGATCCATCCACCG+AGG - chr4.1:25106474-25106493 MS.gene006800:CDS 60.0%
! CTTACGGTTGCGGACGGGTT+TGG + chr4.1:25104520-25104539 None:intergenic 60.0%
ACGGCCCTTACGGTTGCGGA+CGG + chr4.1:25104526-25104545 None:intergenic 65.0%
CAGTGGCGGCTGAGCGTGAC+TGG + chr4.1:25104473-25104492 None:intergenic 70.0%
CGGCCCTTACGGTTGCGGAC+GGG + chr4.1:25104525-25104544 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 25104384 25106540 25104384 ID=MS.gene006800
chr4.1 mRNA 25104384 25106540 25104384 ID=MS.gene006800.t1;Parent=MS.gene006800
chr4.1 exon 25105563 25106540 25105563 ID=MS.gene006800.t1.exon1;Parent=MS.gene006800.t1
chr4.1 CDS 25105563 25106540 25105563 ID=cds.MS.gene006800.t1;Parent=MS.gene006800.t1
chr4.1 exon 25104384 25105067 25104384 ID=MS.gene006800.t1.exon2;Parent=MS.gene006800.t1
chr4.1 CDS 25104384 25105067 25104384 ID=cds.MS.gene006800.t1;Parent=MS.gene006800.t1
Gene Sequence

>MS.gene006800

ATGGCGAAGAAGAGAGAGAGAAGCGTGAATGTCTCCGGTAAACCAAAGCACTCTAATGACGCCAACCGCAGCAATGACTCCAAAATCCAGTCACGCTCAGCCGCCACTGTTCGCCGTCTCAAGACGTACAATACCAAACCCGTCCGCAACCGTAAGGGCCGTGTCTTATGGGAGCAGTATCAACTATCAGACCTTCCATCCACGAGAATCAAACCCGATCGCCAATGGTTCGGGAATCCTCACGTTGTGAATCAGAAAGAGCTAGAGTTTTTTAGAGAAGAAATGGCGAAGCATAGTTCGAGTAATTATAATGTTATCATCAAGGGGAAGAATTTACCCATGTCGCTTCTCAATGATTACCAGAAGCAATCTAGGGTTCACCTTCTTGATAGAGAACCTTTTTTGCATGCGTTTGGACCTAAGACTAAAAGAAAACGTCCAAGTCTTTTGGCTTCTGATTATGAGTCTTTAGCTAAGAAAGCTGATGGTTCTCAAGATGCTTTTGAAGAAAGTAATGAAGCTGATGATGGATTTAGAGATTTAGTGCGACATACCATGTTTGAAAAGGGTCAAAGCAAACGCATATGGGGTGAACTCTACAAGGTGATAGATTCTTCAGATGTTGTTGTGCAGGTTATAGATGCAAGGGATCCACAAGGTACAAGATGTTACCATTTAGAGAAGCATTTGAAAGAAAATTGCAAGCACAAACACATGGTGCTTTTATTGAACAAGTGTGATCTAATTCCTGCTTGGGCAACGAAAGGATGGCTTAGGGTTTTGTCAAAAGAATATCCAACTCTAGCATTCCATGCAAGCATTAATAAGTCTTTTGGAAAGGGTTCACTTCTATCGGTTTTGAGACAATTTGCAAGGTTCAAAAGTGATAAACAAGCAATATCTGTCGGTTTTGTTGGATATCCAAATGTTGGGAAGTCATCTGTGATCAATACATTGCGTACTAAGAATGTTTGCAAGGTTGTGTAAGTTTTAGTTTTCATAGTCATGTTTACATTCTAGAAAATTAACACATTTGATCTTGACATATATGATTCTCACATATTCGTTCTTGATGATAATATGATAGAATCCTTTGTGCATTAGTTAGTAATTTCATCATGTTAGATGTAATTATAGAAAGAGGTGTGCTATATCAAGCCAAAAAATTATAGCGAATGTTTCACGAATTACCATTACCAGTTGACCAATCAAAATTCTCACTTAAGCGGAATTCATGGCGATGGGAGGAGTACATGGAAGTTGTTAGGGAAAGCACAGCACTGGTGAAACAATGTCGCGAGCCACTTTTTCGCGATATATATAGCTTTATCCTTATAGAAATTCACGTGCACCTCTTGATGAATATATGCAACATTTCACATGAACATTTGCATCCTTTCACATTCACATGAATAATTGCATCCTTACATATGAGTCACCATAAAGCAATTATATTATTAATTATTCTTACAGGTTGCTCCAATTCCGGGGGAAACAAAAGTTTGGCAGTATATAACCCTTACAAAGAGGATCTTTTTGATTGATTGTCCAGGAGTTGTCTACCACAACAATGACTCTGAAACAGATGTTGTGCTGAAGGGCGTGGTACGTGTAACAAACTTGAAAGATGCTGCTGACCATATAGGCGAGGTTCTGAAACGTGTGAAGAAGGAGCACTTGACAAGAGCCTATAAAATAAAAGAGTGGGTTGATGAAAATGACTTCCTACTTCAGCTTTGCAAATCATCTGGCAAACTCCTTAAAGGCGGTGAACCTGACCTTATGACTGCTGCAAAGATGATACTTCATGACTGGCAGAGGGGTAAAATTCCCTTTTTTGTTCCTCCTCCATGGCTGGAAGACCTGTCCAAGTATGAGGAGCCTAATGTTAATGGCATTGATGTTGATGAGGCAGTTGACCATAACCAGGCATCTGCTGCCATTAAAGGTATTGCAAATATTCTTTCGTCGCAGCAGCAACAAAGTGTACCAGTTCAAGGTGATTTATATAATGAGAATGAGTTAAAGGGAGAAACTGCTGACAAACTTCTGAACTCGGAGGATGATACAGATGAAGATAGCGACACATTTGAGCAGGATCCATCCACCGAGGTTCCATCTGAACAGCTTACTTCTGCAGCTGGTCCCAACAAATGA
Protein sequence

>MS.gene006800.t1

MAKKRERSVNVSGKPKHSNDANRSNDSKIQSRSAATVRRLKTYNTKPVRNRKGRVLWEQYQLSDLPSTRIKPDRQWFGNPHVVNQKELEFFREEMAKHSSSNYNVIIKGKNLPMSLLNDYQKQSRVHLLDREPFLHAFGPKTKRKRPSLLASDYESLAKKADGSQDAFEESNEADDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVIDARDPQGTRCYHLEKHLKENCKHKHMVLLLNKCDLIPAWATKGWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFARFKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYHNNDSETDVVLKGVVRVTNLKDAADHIGEVLKRVKKEHLTRAYKIKEWVDENDFLLQLCKSSGKLLKGGEPDLMTAAKMILHDWQRGKIPFFVPPPWLEDLSKYEEPNVNGIDVDEAVDHNQASAAIKGIANILSSQQQQSVPVQGDLYNENELKGETADKLLNSEDDTDEDSDTFEQDPSTEVPSEQLTSAAGPNK