Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073324.t1 | GAU24300.1 | 85.7 | 210 | 28 | 1 | 1 | 210 | 35 | 242 | 5.60E-98 | 367.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073324.t1 | O74978 | 43.2 | 155 | 88 | 0 | 38 | 192 | 92 | 246 | 5.4e-33 | 142.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073324.t1 | A0A2Z6ML98 | 85.7 | 210 | 28 | 1 | 1 | 210 | 35 | 242 | 4.0e-98 | 367.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073324.t1 | MTR_4g127330 | 93.855 | 179 | 11 | 0 | 1 | 179 | 1 | 179 | 1.28e-124 | 350 |
| MS.gene073324.t1 | MTR_1g108290 | 87.692 | 195 | 22 | 1 | 16 | 210 | 20 | 212 | 1.06e-117 | 333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073324.t1 | AT5G04600 | 61.780 | 191 | 72 | 1 | 20 | 209 | 28 | 218 | 1.78e-90 | 265 |
Find 39 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCAAACTTTATCTTCTT+TGG | 0.169940 | 8.1:+5760325 | None:intergenic |
| ACTGGAAAATCAAGACATTT+TGG | 0.197189 | 8.1:-5761706 | MS.gene073324:CDS |
| CTTCAAACTTTATCTTCTTT+GGG | 0.255206 | 8.1:+5760326 | None:intergenic |
| GGCAATTCTCAATCTCTTAA+TGG | 0.261298 | 8.1:+5761741 | None:intergenic |
| CATGTCGTTCCCGTTCAATT+TGG | 0.309401 | 8.1:+5760671 | None:intergenic |
| CAGCCGTTGGATTGTGGTCC+TGG | 0.355366 | 8.1:-5761945 | MS.gene073324:CDS |
| GTGCATGGCTTTCTTTGCCT+TGG | 0.362218 | 8.1:+5762114 | None:intergenic |
| AACTTTATCTTCTTTGGGGC+AGG | 0.405333 | 8.1:+5760331 | None:intergenic |
| ATGCGAGCAATGTACAGAAC+AGG | 0.435394 | 8.1:+5761882 | None:intergenic |
| TTATCTTCTTTGGGGCAGGC+TGG | 0.440545 | 8.1:+5760335 | None:intergenic |
| CAATTATCGTTACAAGCCTC+TGG | 0.449754 | 8.1:-5760701 | MS.gene073324:CDS |
| TAATTAGTAACTTACAAATT+GGG | 0.454040 | 8.1:+5761568 | None:intergenic |
| GGACTCTCTCCAAATTGAAC+GGG | 0.463008 | 8.1:-5760680 | MS.gene073324:CDS |
| GCAGCAGCAGCAGGGTGAGA+TGG | 0.504318 | 8.1:+5762064 | None:intergenic |
| ATTTAAGTTCAGGAAGTTTG+CGG | 0.507275 | 8.1:+5761922 | None:intergenic |
| TACATTGCTCGCATTCCACA+CGG | 0.516540 | 8.1:-5761873 | MS.gene073324:CDS |
| TTGTCTCAGCCGTTGGATTG+TGG | 0.523207 | 8.1:-5761951 | MS.gene073324:intron |
| TCTTCTTTGGGGCAGGCTGG+AGG | 0.525567 | 8.1:+5760338 | None:intergenic |
| ACTTCCTGAACTTAAATCCC+TGG | 0.525683 | 8.1:-5761916 | MS.gene073324:CDS |
| AGTTCAGGAAGTTTGCGGCC+AGG | 0.544607 | 8.1:+5761927 | None:intergenic |
| TTAAGAGATTGAGAATTGCC+AGG | 0.546505 | 8.1:-5761738 | MS.gene073324:CDS |
| AAAACGTCGGAAAATGATAG+AGG | 0.547339 | 8.1:-5760491 | MS.gene073324:CDS |
| CGGAAAATGATAGAGGCTGC+TGG | 0.549291 | 8.1:-5760484 | MS.gene073324:CDS |
| GTCGTTTCAGGAAAGAACAT+TGG | 0.550223 | 8.1:-5760557 | MS.gene073324:intron |
| CCATGCACAAGAGTTTGAAA+AGG | 0.560682 | 8.1:-5762099 | MS.gene073324:CDS |
| TCCACACGGGTTCTACGAGA+TGG | 0.570256 | 8.1:-5761859 | MS.gene073324:CDS |
| CATAGAATTTGAATCTCCTG+AGG | 0.575091 | 8.1:-5761680 | MS.gene073324:CDS |
| GAGCATTGAGATGGGGACCA+AGG | 0.576294 | 8.1:-5762131 | None:intergenic |
| TGGACTCTCTCCAAATTGAA+CGG | 0.577893 | 8.1:-5760681 | MS.gene073324:CDS |
| CGGGTTCTACGAGATGGAGA+TGG | 0.590555 | 8.1:-5761853 | MS.gene073324:CDS |
| TTCAAACTTTATCTTCTTTG+GGG | 0.596652 | 8.1:+5760327 | None:intergenic |
| TGCGAGCAATGTACAGAACA+GGG | 0.622218 | 8.1:+5761883 | None:intergenic |
| CGGCCAGGACCACAATCCAA+CGG | 0.630149 | 8.1:+5761942 | None:intergenic |
| TGAACGGGAACGACATGACA+AGG | 0.640978 | 8.1:-5760665 | MS.gene073324:intron |
| ACATTGCTCGCATTCCACAC+GGG | 0.659129 | 8.1:-5761872 | MS.gene073324:CDS |
| TTCTACGAGATGGAGATGGA+TGG | 0.665561 | 8.1:-5761849 | MS.gene073324:intron |
| TCCATCTCGTAGAACCCGTG+TGG | 0.670939 | 8.1:+5761858 | None:intergenic |
| TCAATTTGGAGAGAGTCCAG+AGG | 0.681598 | 8.1:+5760685 | None:intergenic |
| GCGAGCAATGTACAGAACAG+GGG | 0.718926 | 8.1:+5761884 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACATAATTGTAAAACAA+TGG | - | chr8.1:5761568-5761587 | MS.gene073324:intron | 15.0% |
| !! | ATAATCATAAAGATGTTTAT+CGG | + | chr8.1:5761108-5761127 | None:intergenic | 15.0% |
| !! | ATATGTGTTTATCAATTTAT+TGG | - | chr8.1:5760648-5760667 | MS.gene073324:intron | 15.0% |
| !! | TAATTAGTAACTTACAAATT+GGG | + | chr8.1:5760877-5760896 | None:intergenic | 15.0% |
| !! | TTTAACTAGAATTATTTGAA+AGG | - | chr8.1:5761039-5761058 | MS.gene073324:intron | 15.0% |
| !!! | AAAAATCTCTCATTTATTTT+GGG | + | chr8.1:5761212-5761231 | None:intergenic | 15.0% |
| !!! | AGAAACAAATTTTTAAACAT+AGG | + | chr8.1:5761656-5761675 | None:intergenic | 15.0% |
| !!! | TAAAAATCTCTCATTTATTT+TGG | + | chr8.1:5761213-5761232 | None:intergenic | 15.0% |
| !! | AAAATAAGAAATTCTATTGG+AGG | - | chr8.1:5760993-5761012 | MS.gene073324:intron | 20.0% |
| !! | ATGTACAGTATATCATTATA+TGG | + | chr8.1:5761529-5761548 | None:intergenic | 20.0% |
| !! | GAGAAAATAAGAAATTCTAT+TGG | - | chr8.1:5760990-5761009 | MS.gene073324:intron | 20.0% |
| !! | GATAAACATCTTTATGATTA+TGG | - | chr8.1:5761107-5761126 | MS.gene073324:intron | 20.0% |
| !! | GTAATTAGTAACTTACAAAT+TGG | + | chr8.1:5760878-5760897 | None:intergenic | 20.0% |
| !! | TTACTAATTACTTCATTTGT+AGG | - | chr8.1:5760887-5760906 | MS.gene073324:intron | 20.0% |
| !!! | GTTTTACAATTATGTTATGT+TGG | + | chr8.1:5761566-5761585 | None:intergenic | 20.0% |
| ! | ACAACTAATCAGTAAAAGAA+AGG | + | chr8.1:5762022-5762041 | None:intergenic | 25.0% |
| ! | ACTTCAAACTTTATCTTCTT+TGG | + | chr8.1:5762120-5762139 | None:intergenic | 25.0% |
| ! | CTAGAATTATTTGAAAGGAA+AGG | - | chr8.1:5761044-5761063 | MS.gene073324:intron | 25.0% |
| ! | CTTCAAACTTTATCTTCTTT+GGG | + | chr8.1:5762119-5762138 | None:intergenic | 25.0% |
| ! | TATCATATCTCACAATGTTA+AGG | - | chr8.1:5761278-5761297 | MS.gene073324:intron | 25.0% |
| ! | TATTCTTCTTCATGAAATTC+AGG | + | chr8.1:5761681-5761700 | None:intergenic | 25.0% |
| ! | TCAAAATGAATTTGAGCTAA+TGG | - | chr8.1:5761614-5761633 | MS.gene073324:CDS | 25.0% |
| ! | TTCAAACTTTATCTTCTTTG+GGG | + | chr8.1:5762118-5762137 | None:intergenic | 25.0% |
| ! | TTTGTTAGAAATCAGAATGA+AGG | - | chr8.1:5761441-5761460 | MS.gene073324:intron | 25.0% |
| !! | GTAAAGTTTTTCTTTGTAGA+TGG | - | chr8.1:5761710-5761729 | MS.gene073324:CDS | 25.0% |
| !! | TTTTGTATTTTGTGTTAGCA+TGG | - | chr8.1:5761826-5761845 | MS.gene073324:intron | 25.0% |
| !!! | TACAGTTTAAGTTTTTGTGA+AGG | - | chr8.1:5760624-5760643 | MS.gene073324:intron | 25.0% |
| AACAGCAATTAGACATAACA+TGG | + | chr8.1:5762072-5762091 | None:intergenic | 30.0% | |
| AATCAGTTGTTATGGAAAGA+AGG | - | chr8.1:5761496-5761515 | MS.gene073324:intron | 30.0% | |
| AGATACCATACTCTAATAGT+TGG | - | chr8.1:5761246-5761265 | MS.gene073324:intron | 30.0% | |
| AGGAAATTCTAATAGTTGGT+AGG | - | chr8.1:5761302-5761321 | MS.gene073324:intron | 30.0% | |
| AGGAAGGAAATTCTAATAGT+TGG | - | chr8.1:5761298-5761317 | MS.gene073324:intron | 30.0% | |
| ATATCTCACAATGTTAAGGA+AGG | - | chr8.1:5761282-5761301 | MS.gene073324:intron | 30.0% | |
| ATGTTTATCGGATATCTAGA+GGG | + | chr8.1:5761096-5761115 | None:intergenic | 30.0% | |
| ATTGGATGAACACAAAAAGT+TGG | - | chr8.1:5761903-5761922 | MS.gene073324:CDS | 30.0% | |
| CATGGTAAAAATTAGAGACA+TGG | + | chr8.1:5762054-5762073 | None:intergenic | 30.0% | |
| ! | ACTGGAAAATCAAGACATTT+TGG | - | chr8.1:5760736-5760755 | MS.gene073324:intron | 30.0% |
| ! | ATTTAAGTTCAGGAAGTTTG+CGG | + | chr8.1:5760523-5760542 | None:intergenic | 30.0% |
| ! | TTTTCCAGTCTTTTTATTCC+TGG | + | chr8.1:5760725-5760744 | None:intergenic | 30.0% |
| !! | TTGGTTTTTGCAGCTTATTT+TGG | - | chr8.1:5760667-5760686 | MS.gene073324:CDS | 30.0% |
| !!! | TCTCATTTATTTTGGGAGAA+GGG | + | chr8.1:5761205-5761224 | None:intergenic | 30.0% |
| AAAACGTCGGAAAATGATAG+AGG | - | chr8.1:5761951-5761970 | MS.gene073324:intron | 35.0% | |
| AAGATGTAAGAGGACATATC+TGG | - | chr8.1:5761404-5761423 | MS.gene073324:intron | 35.0% | |
| ACCATACTCTAATAGTTGGT+AGG | - | chr8.1:5761250-5761269 | MS.gene073324:intron | 35.0% | |
| AGGCAAAAAAGCTCACAATA+TGG | + | chr8.1:5762002-5762021 | None:intergenic | 35.0% | |
| ATTGCCAGGAATAAAAAGAC+TGG | - | chr8.1:5760718-5760737 | MS.gene073324:intron | 35.0% | |
| CATAGAATTTGAATCTCCTG+AGG | - | chr8.1:5760762-5760781 | MS.gene073324:intron | 35.0% | |
| CATATCTGGTCAATCAGTTT+AGG | - | chr8.1:5761418-5761437 | MS.gene073324:intron | 35.0% | |
| GATGTTTATCGGATATCTAG+AGG | + | chr8.1:5761097-5761116 | None:intergenic | 35.0% | |
| GCAAAAAAGCTCACAATATG+GGG | + | chr8.1:5762000-5762019 | None:intergenic | 35.0% | |
| GGCAAAAAAGCTCACAATAT+GGG | + | chr8.1:5762001-5762020 | None:intergenic | 35.0% | |
| GGCAATTCTCAATCTCTTAA+TGG | + | chr8.1:5760704-5760723 | None:intergenic | 35.0% | |
| TCCTACCAACTATTAGAGTA+TGG | + | chr8.1:5761254-5761273 | None:intergenic | 35.0% | |
| TGAAACGTGACAAAAAACGT+CGG | - | chr8.1:5761938-5761957 | MS.gene073324:CDS | 35.0% | |
| TTAAGAGATTGAGAATTGCC+AGG | - | chr8.1:5760704-5760723 | MS.gene073324:CDS | 35.0% | |
| ! | AACACAAAAAGTTGGTTGAC+AGG | - | chr8.1:5761911-5761930 | MS.gene073324:CDS | 35.0% |
| ! | ACAAGGTATTTAGTGTGATG+AGG | - | chr8.1:5761794-5761813 | MS.gene073324:intron | 35.0% |
| ! | ACACAAAAAGTTGGTTGACA+GGG | - | chr8.1:5761912-5761931 | MS.gene073324:CDS | 35.0% |
| ! | GTTTTTCTTTGTAGATGGAG+AGG | - | chr8.1:5761715-5761734 | MS.gene073324:CDS | 35.0% |
| ! | TTATGTCTAATTGCTGTTGC+AGG | - | chr8.1:5762074-5762093 | MS.gene073324:CDS | 35.0% |
| ! | TTCATTATTGCTGTCGTTTC+AGG | - | chr8.1:5761873-5761892 | MS.gene073324:CDS | 35.0% |
| !! | TTTTCCAGGGATTTAAGTTC+AGG | + | chr8.1:5760533-5760552 | None:intergenic | 35.0% |
| !!! | CTCTCATTTATTTTGGGAGA+AGG | + | chr8.1:5761206-5761225 | None:intergenic | 35.0% |
| !!! | GCAGCTTATTTTGGACAATT+CGG | - | chr8.1:5760676-5760695 | MS.gene073324:CDS | 35.0% |
| ACTTCCTGAACTTAAATCCC+TGG | - | chr8.1:5760526-5760545 | MS.gene073324:CDS | 40.0% | |
| ATTGGAGGATCAACAATCCT+TGG | - | chr8.1:5761008-5761027 | MS.gene073324:intron | 40.0% | |
| CAATTATCGTTACAAGCCTC+TGG | - | chr8.1:5761741-5761760 | MS.gene073324:CDS | 40.0% | |
| CCATGCACAAGAGTTTGAAA+AGG | - | chr8.1:5760343-5760362 | MS.gene073324:CDS | 40.0% | |
| CCTCTTACATCTTACACACA+AGG | + | chr8.1:5761397-5761416 | None:intergenic | 40.0% | |
| CCTTGTGTGTAAGATGTAAG+AGG | - | chr8.1:5761394-5761413 | MS.gene073324:intron | 40.0% | |
| CTACCACAAAAACCTGAAGA+AGG | + | chr8.1:5760837-5760856 | None:intergenic | 40.0% | |
| CTTACATCTTACACACAAGG+CGG | + | chr8.1:5761394-5761413 | None:intergenic | 40.0% | |
| GTCGTTTCAGGAAAGAACAT+TGG | - | chr8.1:5761885-5761904 | MS.gene073324:CDS | 40.0% | |
| TATCGGATATCTAGAGGGAT+AGG | + | chr8.1:5761091-5761110 | None:intergenic | 40.0% | |
| TGGACTCTCTCCAAATTGAA+CGG | - | chr8.1:5761761-5761780 | MS.gene073324:CDS | 40.0% | |
| TGTTATGGAAAGAAGGCTCA+AGG | - | chr8.1:5761503-5761522 | MS.gene073324:intron | 40.0% | |
| TTACATCTTACACACAAGGC+GGG | + | chr8.1:5761393-5761412 | None:intergenic | 40.0% | |
| TTGGAGGATCAACAATCCTT+GGG | - | chr8.1:5761009-5761028 | MS.gene073324:intron | 40.0% | |
| ! | CAAAAACCTGAAGAAGGTGT+TGG | + | chr8.1:5760831-5760850 | None:intergenic | 40.0% |
| ! | CCTTTTCAAACTCTTGTGCA+TGG | + | chr8.1:5760346-5760365 | None:intergenic | 40.0% |
| ! | GCAACAATTTTTGCAACCTC+AGG | + | chr8.1:5760781-5760800 | None:intergenic | 40.0% |
| !! | AACTTTATCTTCTTTGGGGC+AGG | + | chr8.1:5762114-5762133 | None:intergenic | 40.0% |
| !! | ACACCTTCTTCAGGTTTTTG+TGG | - | chr8.1:5760831-5760850 | MS.gene073324:intron | 40.0% |
| !!! | AACAGGGGAAGTATTTTCCA+GGG | + | chr8.1:5760546-5760565 | None:intergenic | 40.0% |
| !!! | TTCGGTCTTTTTCAGACATG+TGG | + | chr8.1:5761355-5761374 | None:intergenic | 40.0% |
| AAAAAATCAGCAGCAGCAGC+AGG | + | chr8.1:5760390-5760409 | None:intergenic | 45.0% | |
| AAAAATCAGCAGCAGCAGCA+GGG | + | chr8.1:5760389-5760408 | None:intergenic | 45.0% | |
| AGGATCAACAATCCTTGGGT+GGG | - | chr8.1:5761013-5761032 | MS.gene073324:intron | 45.0% | |
| ATGCGAGCAATGTACAGAAC+AGG | + | chr8.1:5760563-5760582 | None:intergenic | 45.0% | |
| CATGTCGTTCCCGTTCAATT+TGG | + | chr8.1:5761774-5761793 | None:intergenic | 45.0% | |
| CCATAACAACTGATTGCCGA+CGG | + | chr8.1:5761491-5761510 | None:intergenic | 45.0% | |
| GGACTCTCTCCAAATTGAAC+GGG | - | chr8.1:5761762-5761781 | MS.gene073324:CDS | 45.0% | |
| TACATTGCTCGCATTCCACA+CGG | - | chr8.1:5760569-5760588 | MS.gene073324:intron | 45.0% | |
| TCAATTTGGAGAGAGTCCAG+AGG | + | chr8.1:5761760-5761779 | None:intergenic | 45.0% | |
| TGCGAGCAATGTACAGAACA+GGG | + | chr8.1:5760562-5760581 | None:intergenic | 45.0% | |
| TTCTACGAGATGGAGATGGA+TGG | - | chr8.1:5760593-5760612 | MS.gene073324:intron | 45.0% | |
| ! | CAGACATGTGGTGGTGTATT+TGG | + | chr8.1:5761343-5761362 | None:intergenic | 45.0% |
| ! | GCTTTTCCAACACCTTCTTC+AGG | - | chr8.1:5760822-5760841 | MS.gene073324:intron | 45.0% |
| ! | GTCTAATTGCTGTTGCAGGT+GGG | - | chr8.1:5762078-5762097 | MS.gene073324:CDS | 45.0% |
| ! | TGTCTAATTGCTGTTGCAGG+TGG | - | chr8.1:5762077-5762096 | MS.gene073324:CDS | 45.0% |
| !! | GTTGATTTTGTCTCAGCCGT+TGG | - | chr8.1:5760484-5760503 | MS.gene073324:CDS | 45.0% |
| !!! | GAACAGGGGAAGTATTTTCC+AGG | + | chr8.1:5760547-5760566 | None:intergenic | 45.0% |
| !!! | GGTCTTTTTCAGACATGTGG+TGG | + | chr8.1:5761352-5761371 | None:intergenic | 45.0% |
| !!! | TGCTGCTGCTGCTGATTTTT+TGG | - | chr8.1:5760389-5760408 | MS.gene073324:intron | 45.0% |
| AACTGATTGCCGACGGCTTT+AGG | + | chr8.1:5761484-5761503 | None:intergenic | 50.0% | |
| ACATTGCTCGCATTCCACAC+GGG | - | chr8.1:5760570-5760589 | MS.gene073324:intron | 50.0% | |
| ACGAGATGGAGATGGATGGT+AGG | - | chr8.1:5760597-5760616 | MS.gene073324:intron | 50.0% | |
| ATCAACAATCCTTGGGTGGG+GGG | - | chr8.1:5761016-5761035 | MS.gene073324:intron | 50.0% | |
| CCGTCGGCAATCAGTTGTTA+TGG | - | chr8.1:5761488-5761507 | MS.gene073324:intron | 50.0% | |
| CGGAAAATGATAGAGGCTGC+TGG | - | chr8.1:5761958-5761977 | MS.gene073324:intron | 50.0% | |
| CTTACACACAAGGCGGGAAA+AGG | + | chr8.1:5761387-5761406 | None:intergenic | 50.0% | |
| GAGGATCAACAATCCTTGGG+TGG | - | chr8.1:5761012-5761031 | MS.gene073324:intron | 50.0% | |
| GATCAACAATCCTTGGGTGG+GGG | - | chr8.1:5761015-5761034 | MS.gene073324:intron | 50.0% | |
| GCGAGCAATGTACAGAACAG+GGG | + | chr8.1:5760561-5760580 | None:intergenic | 50.0% | |
| GGATCAACAATCCTTGGGTG+GGG | - | chr8.1:5761014-5761033 | MS.gene073324:intron | 50.0% | |
| GGGAAAAGGATCGAGAGCTT+CGG | + | chr8.1:5761373-5761392 | None:intergenic | 50.0% | |
| GTGCATGGCTTTCTTTGCCT+TGG | + | chr8.1:5760331-5760350 | None:intergenic | 50.0% | |
| TGAACGGGAACGACATGACA+AGG | - | chr8.1:5761777-5761796 | MS.gene073324:intron | 50.0% | |
| TTGTCTCAGCCGTTGGATTG+TGG | - | chr8.1:5760491-5760510 | MS.gene073324:CDS | 50.0% | |
| ! | CTTGAAGCACCTAAAGCCGT+CGG | - | chr8.1:5761472-5761491 | MS.gene073324:intron | 50.0% |
| !! | ACGGCTTTAGGTGCTTCAAG+TGG | + | chr8.1:5761472-5761491 | None:intergenic | 50.0% |
| !! | TTATCTTCTTTGGGGCAGGC+TGG | + | chr8.1:5762110-5762129 | None:intergenic | 50.0% |
| AGTTCAGGAAGTTTGCGGCC+AGG | + | chr8.1:5760518-5760537 | None:intergenic | 55.0% | |
| CGGGTTCTACGAGATGGAGA+TGG | - | chr8.1:5760589-5760608 | MS.gene073324:intron | 55.0% | |
| CTAGTTAAACCCCCCACCCA+AGG | + | chr8.1:5761028-5761047 | None:intergenic | 55.0% | |
| TCCACACGGGTTCTACGAGA+TGG | - | chr8.1:5760583-5760602 | MS.gene073324:intron | 55.0% | |
| TCCATCTCGTAGAACCCGTG+TGG | + | chr8.1:5760587-5760606 | None:intergenic | 55.0% | |
| CAGCCGTTGGATTGTGGTCC+TGG | - | chr8.1:5760497-5760516 | MS.gene073324:CDS | 60.0% | |
| CGGCCAGGACCACAATCCAA+CGG | + | chr8.1:5760503-5760522 | None:intergenic | 60.0% | |
| !! | TCTTCTTTGGGGCAGGCTGG+AGG | + | chr8.1:5762107-5762126 | None:intergenic | 60.0% |
| GCAGCAGCAGCAGGGTGAGA+TGG | + | chr8.1:5760381-5760400 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 5760321 | 5762143 | 5760321 | ID=MS.gene073324 |
| chr8.1 | mRNA | 5760321 | 5762143 | 5760321 | ID=MS.gene073324.t1;Parent=MS.gene073324 |
| chr8.1 | exon | 5762054 | 5762143 | 5762054 | ID=MS.gene073324.t1.exon1;Parent=MS.gene073324.t1 |
| chr8.1 | CDS | 5762054 | 5762143 | 5762054 | ID=cds.MS.gene073324.t1;Parent=MS.gene073324.t1 |
| chr8.1 | exon | 5761850 | 5761964 | 5761850 | ID=MS.gene073324.t1.exon2;Parent=MS.gene073324.t1 |
| chr8.1 | CDS | 5761850 | 5761964 | 5761850 | ID=cds.MS.gene073324.t1;Parent=MS.gene073324.t1 |
| chr8.1 | exon | 5761583 | 5761784 | 5761583 | ID=MS.gene073324.t1.exon3;Parent=MS.gene073324.t1 |
| chr8.1 | CDS | 5761583 | 5761784 | 5761583 | ID=cds.MS.gene073324.t1;Parent=MS.gene073324.t1 |
| chr8.1 | exon | 5760666 | 5760735 | 5760666 | ID=MS.gene073324.t1.exon4;Parent=MS.gene073324.t1 |
| chr8.1 | CDS | 5760666 | 5760735 | 5760666 | ID=cds.MS.gene073324.t1;Parent=MS.gene073324.t1 |
| chr8.1 | exon | 5760459 | 5760569 | 5760459 | ID=MS.gene073324.t1.exon5;Parent=MS.gene073324.t1 |
| chr8.1 | CDS | 5760459 | 5760569 | 5760459 | ID=cds.MS.gene073324.t1;Parent=MS.gene073324.t1 |
| chr8.1 | exon | 5760321 | 5760368 | 5760321 | ID=MS.gene073324.t1.exon6;Parent=MS.gene073324.t1 |
| chr8.1 | CDS | 5760321 | 5760368 | 5760321 | ID=cds.MS.gene073324.t1;Parent=MS.gene073324.t1 |
| Gene Sequence |
| Protein sequence |
