AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059846

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059846.t1 MTR_2g079510 98.258 574 10 0 1 574 1 574 0.0 1173
MS.gene059846.t1 MTR_4g081850 88.078 562 49 3 1 552 1 554 0.0 990
MS.gene059846.t1 MTR_1g048030 34.625 387 221 6 205 566 134 513 3.29e-59 207
MS.gene059846.t1 MTR_4g050490 30.422 332 159 9 193 460 150 473 1.25e-33 135
MS.gene059846.t1 MTR_5g010400 72.222 72 20 0 7 78 14 85 4.88e-28 107
MS.gene059846.t1 MTR_7g094890 26.354 277 170 9 206 461 110 373 1.74e-15 79.0
MS.gene059846.t1 MTR_2g079540 69.388 49 13 1 7 53 15 63 1.44e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059846.t1 AT1G52980 73.675 566 138 4 4 561 3 565 0.0 822
MS.gene059846.t1 AT3G07050 32.468 385 232 5 182 539 105 488 1.14e-63 219
MS.gene059846.t1 AT2G27200 29.412 323 171 7 193 460 149 469 1.13e-36 144
MS.gene059846.t1 AT1G08410 28.235 340 180 8 193 473 149 483 6.32e-36 142
MS.gene059846.t1 AT4G02790 28.253 269 161 8 206 455 109 364 9.40e-18 85.9

Find 140 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTTGCAATAGCTTTAA+TGG 0.156377 2.2:-15721072 None:intergenic
GGCGGAGCGCCTCTCGGTCT+TGG 0.227628 2.2:-15716701 None:intergenic
GCGGAGCGCCTCTCGGTCTT+GGG 0.263427 2.2:-15716700 None:intergenic
GTTGGAGTGCTTTGGTTTAC+CGG 0.301059 2.2:-15716656 None:intergenic
CTGGTACATTTCTTTGCTGC+TGG 0.301939 2.2:-15721103 None:intergenic
GGTCCAAATGCATCAGAAAA+AGG 0.325775 2.2:-15717202 None:intergenic
TCGGGTGGATGGAAGCTCTT+TGG 0.328019 2.2:-15716806 None:intergenic
TAATTACAATATTATTCTTA+AGG 0.328853 2.2:+15717019 MS.gene059846:CDS
TCTGAGGAGCCTAATGTTAA+TGG 0.331391 2.2:+15721005 MS.gene059846:CDS
TGCAAGGTTGCTCCAATTCC+AGG 0.333863 2.2:+15719294 MS.gene059846:CDS
GAAACTCATGATTCACTTGT+TGG 0.343827 2.2:-15721311 None:intergenic
TTGACGATCTGGTTTGATTC+GGG 0.349530 2.2:-15716824 None:intergenic
ACTGATGACTTCCCAACATT+TGG 0.350955 2.2:-15719090 None:intergenic
GCAAGTATTAATAAGTCCTT+TGG 0.355327 2.2:+15718809 MS.gene059846:CDS
AATTACAATATTATTCTTAA+GGG 0.359879 2.2:+15717020 MS.gene059846:CDS
ATCATCTGGCAAACTCCTTA+AGG 0.385274 2.2:+15720532 MS.gene059846:CDS
TTCGAAGAGAAGTATGCTTC+TGG 0.392309 2.2:+15717939 MS.gene059846:CDS
AAAGATGCGGCGGACCATAT+AGG 0.394706 2.2:+15720083 MS.gene059846:CDS
ATTGACGATCTGGTTTGATT+CGG 0.397208 2.2:-15716825 None:intergenic
GTTTCAAAACCTCGCCTATA+TGG 0.397582 2.2:-15720097 None:intergenic
TTACAAAGTGATAGATTCTT+CGG 0.406549 2.2:+15718058 MS.gene059846:CDS
AGCACTCCAACGACGCCAAC+CGG 0.410953 2.2:+15716668 MS.gene059846:CDS
TCTGTATAATCCCCAGTGTC+TGG 0.420228 2.2:-15721182 None:intergenic
ATTGCTCCGGTTGGCGTCGT+TGG 0.422660 2.2:-15716674 None:intergenic
CTTCAGCTTTGCAAATCATC+TGG 0.430614 2.2:+15720518 MS.gene059846:CDS
TGCTTAGGGTTCACTTCTAT+CGG 0.432048 2.2:+15719002 MS.gene059846:intron
CGGTCTTGGGGTCATTGCTC+CGG 0.432578 2.2:-15716687 None:intergenic
ACATCTATGCCATTAACATT+AGG 0.435407 2.2:-15721014 None:intergenic
ATACCGAACCATTGACGATC+TGG 0.435791 2.2:-15716835 None:intergenic
TTGGCGTCGTTGGAGTGCTT+TGG 0.439185 2.2:-15716664 None:intergenic
TGGCAGCAGATGCCTGGTTA+TGG 0.442559 2.2:-15721052 None:intergenic
CTTACGGTTACGAACGGGTC+GGG 0.448708 2.2:-15716755 None:intergenic
TCATCTTTGCTGCGGTCATA+AGG 0.452623 2.2:-15720911 None:intergenic
CAAAGAAATGTACCAGTTCA+AGG 0.453415 2.2:+15721110 MS.gene059846:CDS
AAGGCATCCTGTCGCGGAGG+AGG 0.459375 2.2:-15720975 None:intergenic
CATGATTCACTTGTTGGGTC+CGG 0.462278 2.2:-15721305 None:intergenic
TTATATAAATCCCCTTGAAC+TGG 0.467150 2.2:-15721122 None:intergenic
TGGTACATTTCTTTGCTGCT+GGG 0.469996 2.2:-15721102 None:intergenic
AAACTCATGATTCACTTGTT+GGG 0.470096 2.2:-15721310 None:intergenic
TTGTTGGATATCCAAATGTT+GGG 0.472784 2.2:+15719079 MS.gene059846:CDS
GTGGATGGATCCTGCTCAGA+TGG 0.476614 2.2:-15721248 None:intergenic
AGGGTCAAAGCAAACGCATA+TGG 0.478390 2.2:+15718027 MS.gene059846:CDS
TTCTTCGGATGTTGTTGTCC+AGG 0.479432 2.2:+15718073 MS.gene059846:CDS
CTTTAATGGCAGCAGATGCC+TGG 0.480035 2.2:-15721058 None:intergenic
GGTGGCGGCGGAGCGCCTCT+CGG 0.483620 2.2:-15716707 None:intergenic
CTTGAGACGGCGGACGGTGG+CGG 0.486993 2.2:-15716722 None:intergenic
GCAGAAATAAGTTGCTCAGA+TGG 0.487234 2.2:-15721278 None:intergenic
GTGCGATCTAATTCCTGCTT+GGG 0.492181 2.2:+15718730 MS.gene059846:intron
GGGTCAAAGCAAACGCATAT+GGG 0.495588 2.2:+15718028 MS.gene059846:CDS
TTCCAGGGGAAACAAAAGTC+TGG 0.495795 2.2:+15719310 MS.gene059846:CDS
CACTGAGGTCCCATCTGAGC+AGG 0.498975 2.2:+15721238 MS.gene059846:CDS
GCAACTTATTTCTGCTGAGC+CGG 0.499680 2.2:+15721286 MS.gene059846:CDS
TCTGGTTTGATTCGGGTGGA+TGG 0.500388 2.2:-15716817 None:intergenic
ATTCCTGCTTGGGCAACAAA+AGG 0.500766 2.2:+15718740 MS.gene059846:CDS
TGACCCTTACGGTTACGAAC+GGG 0.505883 2.2:-15716760 None:intergenic
AGTGCGATCTAATTCCTGCT+TGG 0.506473 2.2:+15718729 MS.gene059846:intron
TTTGCTGCGGTCATAAGGTC+AGG 0.508113 2.2:-15720906 None:intergenic
AAACCAGATCGTCAATGGTT+CGG 0.508424 2.2:+15716832 MS.gene059846:CDS
CTGACCAACTTCCAGACACT+GGG 0.509068 2.2:+15721171 MS.gene059846:CDS
TTGTTGTGGTAGACAACTCC+TGG 0.509529 2.2:-15719375 None:intergenic
TGCTCAAGACATGACCCTTA+CGG 0.510670 2.2:-15716771 None:intergenic
GAGACGGCGGACGGTGGCGG+CGG 0.511306 2.2:-15716719 None:intergenic
GAGCGAAACGTTAACCTCTC+CGG 0.518412 2.2:+15716637 MS.gene059846:CDS
TTTGTTGGATATCCAAATGT+TGG 0.518902 2.2:+15719078 MS.gene059846:CDS
CTTGGGGTCATTGCTCCGGT+TGG 0.520085 2.2:-15716683 None:intergenic
GAATCAAACCAGATCGTCAA+TGG 0.528473 2.2:+15716827 MS.gene059846:CDS
CTGCTTGGGCAACAAAAGGA+TGG 0.530434 2.2:+15718744 MS.gene059846:CDS
GAGCTTATAAAATAAAAGAA+TGG 0.536265 2.2:+15720144 MS.gene059846:CDS
AGGACTTATTAATACTTGCA+TGG 0.542141 2.2:-15718805 None:intergenic
GATAAGCAAGCAATATCTGT+TGG 0.542451 2.2:+15719054 MS.gene059846:CDS
GCTGACCAACTTCCAGACAC+TGG 0.544164 2.2:+15721170 MS.gene059846:CDS
GCTTTGACCCTTCTCAAACA+TGG 0.549519 2.2:-15718015 None:intergenic
TAATATGTCATAGGTTTGCA+AGG 0.549737 2.2:+15719278 MS.gene059846:intron
TGATACTTCACGATTGGCAG+AGG 0.551420 2.2:+15720931 MS.gene059846:CDS
CAAAGATGATACTTCACGAT+TGG 0.552750 2.2:+15720925 MS.gene059846:CDS
GCAAGGTTGCTCCAATTCCA+GGG 0.553714 2.2:+15719295 MS.gene059846:CDS
TGAAACAGATGTTGTGCTGA+AGG 0.557161 2.2:+15719404 MS.gene059846:CDS
AATCCCCAGTGTCTGGAAGT+TGG 0.559535 2.2:-15721175 None:intergenic
AGGCATCCTGTCGCGGAGGA+GGG 0.561993 2.2:-15720974 None:intergenic
ATGATTTGCAAAGCTGAAGT+AGG 0.563324 2.2:-15720514 None:intergenic
TGATACAGGTTATAGATGCA+AGG 0.563934 2.2:+15718516 MS.gene059846:intron
AAGAAAGCTGATGGTTCTCA+AGG 0.565803 2.2:+15717280 MS.gene059846:CDS
TAATCATTGAGAAGCGACAT+AGG 0.566710 2.2:-15717053 None:intergenic
GTGAATATTGTAGCAATCGA+GGG 0.567017 2.2:+15717159 MS.gene059846:intron
GGATGCCTTGTCCGAGTCTG+AGG 0.567765 2.2:+15720989 MS.gene059846:CDS
AAAGAAATGTACCAGTTCAA+GGG 0.570482 2.2:+15721111 MS.gene059846:CDS
AACATTAGGCTCCTCAGACT+CGG 0.574413 2.2:-15721000 None:intergenic
TAATCAGAAGCTAAAAGACT+TGG 0.574791 2.2:-15717244 None:intergenic
TATTAATAAGTCCTTTGGAA+AGG 0.575592 2.2:+15718814 MS.gene059846:CDS
TGATAACATCTTGTGCCTTG+TGG 0.576348 2.2:-15718542 None:intergenic
CTTGCATGGAATGCTAGCGT+TGG 0.576468 2.2:-15718791 None:intergenic
TCAGATGGGACCTCAGTGGA+TGG 0.578068 2.2:-15721233 None:intergenic
TGAAGATAGTGACGCATCTG+AGG 0.578703 2.2:+15721205 MS.gene059846:CDS
ATTACAATATTATTCTTAAG+GGG 0.583366 2.2:+15717021 MS.gene059846:CDS
GCAGAAGCTGATGAAGCAGA+TGG 0.586404 2.2:+15717969 MS.gene059846:CDS
CAAGGTTGCTCCAATTCCAG+GGG 0.586597 2.2:+15719296 MS.gene059846:CDS
CCGACCCGTTCGTAACCGTA+AGG 0.586850 2.2:+15716756 MS.gene059846:CDS
GCTTCTCAATGATTATCAGA+AGG 0.590205 2.2:+15717061 MS.gene059846:CDS
GTACATCTTGAGACGGCGGA+CGG 0.590589 2.2:-15716728 None:intergenic
GCGACATACCATGTTTGAGA+AGG 0.592879 2.2:+15718007 MS.gene059846:CDS
AGTGCTTTGGTTTACCGGAG+AGG 0.596572 2.2:-15716651 None:intergenic
ACGATCTGGTTTGATTCGGG+TGG 0.597307 2.2:-15716821 None:intergenic
GATACAGGTTATAGATGCAA+GGG 0.598294 2.2:+15718517 MS.gene059846:intron
TGGATGGATCCTGCTCAGAT+GGG 0.599401 2.2:-15721247 None:intergenic
CGACATACCATGTTTGAGAA+GGG 0.600865 2.2:+15718008 MS.gene059846:CDS
GCTTTAGCTAAGAAAGCTGA+TGG 0.603579 2.2:+15717271 MS.gene059846:CDS
TGTGAATATTGTAGCAATCG+AGG 0.604952 2.2:+15717158 MS.gene059846:intron
CGAGGCAGTTGACCATAACC+AGG 0.605444 2.2:+15721040 MS.gene059846:CDS
GATACTTCACGATTGGCAGA+GGG 0.606800 2.2:+15720932 MS.gene059846:CDS
CATCTTGAGACGGCGGACGG+TGG 0.606870 2.2:-15716725 None:intergenic
CGGAGCGCCTCTCGGTCTTG+GGG 0.607369 2.2:-15716699 None:intergenic
TCGGACAAGGCATCCTGTCG+CGG 0.610044 2.2:-15720981 None:intergenic
AGAGAAGTATGCTTCTGGTA+CGG 0.614990 2.2:+15717944 MS.gene059846:CDS
AAGAAATGTACCAGTTCAAG+GGG 0.617586 2.2:+15721112 MS.gene059846:CDS
AGGCTCCTCAGACTCGGACA+AGG 0.620195 2.2:-15720994 None:intergenic
AGATGTTGTGCTGAAGGGTG+TGG 0.624230 2.2:+15719410 MS.gene059846:CDS
TCAAAAGTATACCTTTCCAA+AGG 0.626771 2.2:-15718825 None:intergenic
GAAACAGATGTTGTGCTGAA+GGG 0.627938 2.2:+15719405 MS.gene059846:CDS
TTGCTCAGATGGAACATCAG+TGG 0.632602 2.2:-15721267 None:intergenic
CTGTTTCAGAGTCATTGTTG+TGG 0.635053 2.2:-15719389 None:intergenic
AGATAGTGACGCATCTGAGG+AGG 0.635212 2.2:+15721208 MS.gene059846:CDS
CCTTACGGTTACGAACGGGT+CGG 0.635620 2.2:-15716756 None:intergenic
ATGACCCTTACGGTTACGAA+CGG 0.636046 2.2:-15716761 None:intergenic
CTGCTCAGATGGGACCTCAG+TGG 0.639451 2.2:-15721237 None:intergenic
CGACCCGTTCGTAACCGTAA+GGG 0.644461 2.2:+15716757 MS.gene059846:CDS
AGTATATTACCCTTACAAAG+AGG 0.647626 2.2:+15719334 MS.gene059846:CDS
AAATTGCAAGCACAAACACA+TGG 0.648597 2.2:+15718586 MS.gene059846:CDS
GACAAGGCATCCTGTCGCGG+AGG 0.650985 2.2:-15720978 None:intergenic
GGTCAAAGCAAACGCATATG+GGG 0.655411 2.2:+15718029 MS.gene059846:CDS
TCAGATGGAACATCAGTGGA+TGG 0.659620 2.2:-15721263 None:intergenic
GTGAAGTATCATCTTTGCTG+CGG 0.666582 2.2:-15720919 None:intergenic
AACAAACTTGAAAGATGCGG+CGG 0.666795 2.2:+15720073 MS.gene059846:CDS
TGCGGCGGACCATATAGGCG+AGG 0.667170 2.2:+15720088 MS.gene059846:CDS
TGTAACAAACTTGAAAGATG+CGG 0.682782 2.2:+15720070 MS.gene059846:CDS
GCAATGACCCCAAGACCGAG+AGG 0.683849 2.2:+15716692 MS.gene059846:CDS
ATACTTCACGATTGGCAGAG+GGG 0.703263 2.2:+15720933 MS.gene059846:CDS
TAATGGCATAGATGTTGACG+AGG 0.722337 2.2:+15721022 MS.gene059846:CDS
ATAGATGCAAGGGATCCACA+AGG 0.751368 2.2:+15718527 MS.gene059846:CDS
TGACCAACTTCCAGACACTG+GGG 0.753638 2.2:+15721172 MS.gene059846:CDS
TGAGGAGGATCCATCCACTG+AGG 0.772372 2.2:+15721223 MS.gene059846:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATAGTTTAAATGA+AGG + chr2.2:15719915-15719934 MS.gene059846:intron 10.0%
!! AATAAAATAGTTTAAATGAA+GGG + chr2.2:15719916-15719935 MS.gene059846:intron 10.0%
!! AATGTAAAGAAATAAATTAA+GGG - chr2.2:15718678-15718697 None:intergenic 10.0%
!! AATTACAATATTATTCTTAA+GGG + chr2.2:15717020-15717039 MS.gene059846:CDS 10.0%
!! TAATGTAAAGAAATAAATTA+AGG - chr2.2:15718679-15718698 None:intergenic 10.0%
!! TAATTACAATATTATTCTTA+AGG + chr2.2:15717019-15717038 MS.gene059846:CDS 10.0%
!! TTACTTTGATATTAAAAAAA+AGG + chr2.2:15720581-15720600 MS.gene059846:intron 10.0%
!! AAAAACAAGAATATAAAAGT+TGG - chr2.2:15720225-15720244 None:intergenic 15.0%
!! ATAATGAATTTATATTCTGT+GGG - chr2.2:15719784-15719803 None:intergenic 15.0%
!! ATCACAATAATATTAAACAA+TGG - chr2.2:15718186-15718205 None:intergenic 15.0%
!! ATTACAATATTATTCTTAAG+GGG + chr2.2:15717021-15717040 MS.gene059846:CDS 15.0%
!! TATAATGAATTTATATTCTG+TGG - chr2.2:15719785-15719804 None:intergenic 15.0%
!! TTTATTTGCTTAATAAAGAA+TGG + chr2.2:15717784-15717803 MS.gene059846:intron 15.0%
!!! TTAATACTTTACTTATTTTC+AGG + chr2.2:15720043-15720062 MS.gene059846:intron 15.0%
!! AAAGTTCAAGAAAAACAAAT+TGG - chr2.2:15720815-15720834 None:intergenic 20.0%
!! AAGTTTGTCATAGTAAAATA+AGG + chr2.2:15718308-15718327 MS.gene059846:intron 20.0%
!! AATTCAAAAAGAATACCTTA+AGG - chr2.2:15720550-15720569 None:intergenic 20.0%
!! AGTTTGTCATAGTAAAATAA+GGG + chr2.2:15718309-15718328 MS.gene059846:intron 20.0%
!! ATGTTCTTCCTTAAATAATT+TGG - chr2.2:15717695-15717714 None:intergenic 20.0%
!! GAGCTTATAAAATAAAAGAA+TGG + chr2.2:15720144-15720163 MS.gene059846:CDS 20.0%
!! TAATAGTTTCTTAAAACCAA+AGG + chr2.2:15717522-15717541 MS.gene059846:intron 20.0%
!! TATATTTCTTATGTAAGACA+AGG + chr2.2:15720835-15720854 MS.gene059846:intron 20.0%
!! TTCAAAAACCAGAAAAATAT+AGG - chr2.2:15719607-15719626 None:intergenic 20.0%
!!! AAATTCAGCTTGTTAATTTT+AGG + chr2.2:15716899-15716918 MS.gene059846:intron 20.0%
!!! AATTCAGCTTGTTAATTTTA+GGG + chr2.2:15716900-15716919 MS.gene059846:intron 20.0%
!!! ATAATATAAAGAGCATACAT+GGG - chr2.2:15719972-15719991 None:intergenic 20.0%
!!! ATATTATTCATGTGTTGTTT+TGG + chr2.2:15719635-15719654 MS.gene059846:intron 20.0%
!!! GTCATATACTCATATTTTAA+GGG + chr2.2:15719839-15719858 MS.gene059846:intron 20.0%
!!! TAAACAAAATTTTAGCAACA+GGG - chr2.2:15718109-15718128 None:intergenic 20.0%
!!! TATAATATAAAGAGCATACA+TGG - chr2.2:15719973-15719992 None:intergenic 20.0%
!!! TATGTGAATTTATTGGTTTA+TGG + chr2.2:15717134-15717153 MS.gene059846:intron 20.0%
!!! TATTATTCATGTGTTGTTTT+GGG + chr2.2:15719636-15719655 MS.gene059846:intron 20.0%
!!! TTAAACAAAATTTTAGCAAC+AGG - chr2.2:15718110-15718129 None:intergenic 20.0%
!!! TTCCTTAAATAATTTGGTTT+TGG - chr2.2:15717689-15717708 None:intergenic 20.0%
! AAAACACAAAAACAGTTATC+AGG - chr2.2:15717891-15717910 None:intergenic 25.0%
! AAAATATAGGATGTATCACA+AGG - chr2.2:15719594-15719613 None:intergenic 25.0%
! AATATTGTTCCTATTGTAGT+GGG + chr2.2:15719813-15719832 MS.gene059846:intron 25.0%
! AGATTACTAAACAATCATGT+TGG + chr2.2:15719553-15719572 MS.gene059846:intron 25.0%
! AGGTTAAAAACAACATCATT+TGG - chr2.2:15717871-15717890 None:intergenic 25.0%
! ATTTAAGGAAGAACATGAAA+GGG + chr2.2:15717699-15717718 MS.gene059846:intron 25.0%
! CAAACCTATGACATATTAAT+CGG - chr2.2:15719276-15719295 None:intergenic 25.0%
! CTCCAAAACCAAATTATTTA+AGG + chr2.2:15717684-15717703 MS.gene059846:intron 25.0%
! GCTTAATTGTTGAAATGATT+TGG + chr2.2:15717106-15717125 MS.gene059846:intron 25.0%
! GGTGAATTATGTGAATTTAT+TGG + chr2.2:15717127-15717146 MS.gene059846:intron 25.0%
! TAAAGATAATCTATGTAGCA+CGG + chr2.2:15717369-15717388 MS.gene059846:intron 25.0%
! TAATATTGTTCCTATTGTAG+TGG + chr2.2:15719812-15719831 MS.gene059846:intron 25.0%
! TATTTAAGGAAGAACATGAA+AGG + chr2.2:15717698-15717717 MS.gene059846:intron 25.0%
! TGCTAAAATGCTTATAATTC+TGG - chr2.2:15719236-15719255 None:intergenic 25.0%
! TTACAAAGTGATAGATTCTT+CGG + chr2.2:15718058-15718077 MS.gene059846:CDS 25.0%
! TTTCTTAAAACCAAAGGAAA+GGG + chr2.2:15717528-15717547 MS.gene059846:intron 25.0%
!! GGTCATATACTCATATTTTA+AGG + chr2.2:15719838-15719857 MS.gene059846:intron 25.0%
!! TATTAATAAGTCCTTTGGAA+AGG + chr2.2:15718814-15718833 MS.gene059846:CDS 25.0%
!! TGATACATCCTATATTTTTC+TGG + chr2.2:15719596-15719615 MS.gene059846:intron 25.0%
!!! AACATTTGCAATAGCTTTAA+TGG - chr2.2:15721075-15721094 None:intergenic 25.0%
!!! AGAATTATAAGCATTTTAGC+AGG + chr2.2:15719235-15719254 MS.gene059846:intron 25.0%
!!! TATTTAAGTTGATGAATCCA+TGG + chr2.2:15718409-15718428 MS.gene059846:intron 25.0%
!!! TTCATCTTTAGTTGATTTGT+TGG + chr2.2:15718849-15718868 MS.gene059846:intron 25.0%
!!! TTCCTGCTTAAGTTTTAATT+TGG + chr2.2:15719170-15719189 MS.gene059846:intron 25.0%
AAAGAAATGTACCAGTTCAA+GGG + chr2.2:15721111-15721130 MS.gene059846:CDS 30.0%
AAGGGAAAAAACTAGAAGTT+GGG + chr2.2:15718327-15718346 MS.gene059846:intron 30.0%
ACATCTATGCCATTAACATT+AGG - chr2.2:15721017-15721036 None:intergenic 30.0%
AGGACTTATTAATACTTGCA+TGG - chr2.2:15718808-15718827 None:intergenic 30.0%
AGTATATTACCCTTACAAAG+AGG + chr2.2:15719334-15719353 MS.gene059846:CDS 30.0%
ATAAAAAAGACAAGTGAAGC+TGG + chr2.2:15718901-15718920 MS.gene059846:intron 30.0%
ATAAGATAGCAAATAGCTGA+AGG - chr2.2:15718966-15718985 None:intergenic 30.0%
ATATTGTTCCTATTGTAGTG+GGG + chr2.2:15719814-15719833 MS.gene059846:intron 30.0%
ATCTAGTCTAAGTCAAATTG+AGG - chr2.2:15720650-15720669 None:intergenic 30.0%
ATGAAGATCTACTATTCAAC+AGG - chr2.2:15720193-15720212 None:intergenic 30.0%
ATGCTATTACTTCAAAGGAA+AGG + chr2.2:15717569-15717588 MS.gene059846:intron 30.0%
ATTAACGCATTACTGGAAAT+TGG - chr2.2:15718875-15718894 None:intergenic 30.0%
ATTGCTCATTATCATGCTTA+GGG + chr2.2:15718988-15719007 MS.gene059846:intron 30.0%
CAAAAAGATCCTCTTTGTAA+GGG - chr2.2:15719346-15719365 None:intergenic 30.0%
CTCCAAATTAAAACTTAAGC+AGG - chr2.2:15719175-15719194 None:intergenic 30.0%
CTTCAATGCTATTACTTCAA+AGG + chr2.2:15717564-15717583 MS.gene059846:intron 30.0%
GCAAGTATTAATAAGTCCTT+TGG + chr2.2:15718809-15718828 MS.gene059846:CDS 30.0%
GTAAGGAATTATGAACAGTA+AGG + chr2.2:15720316-15720335 MS.gene059846:intron 30.0%
GTTTCTTAAAACCAAAGGAA+AGG + chr2.2:15717527-15717546 MS.gene059846:intron 30.0%
TAAGGGAAAAAACTAGAAGT+TGG + chr2.2:15718326-15718345 MS.gene059846:intron 30.0%
TAATATGTCATAGGTTTGCA+AGG + chr2.2:15719278-15719297 MS.gene059846:intron 30.0%
TAATCAGAAGCTAAAAGACT+TGG - chr2.2:15717247-15717266 None:intergenic 30.0%
TATTGCTCATTATCATGCTT+AGG + chr2.2:15718987-15719006 MS.gene059846:intron 30.0%
TCAAAAAGATCCTCTTTGTA+AGG - chr2.2:15719347-15719366 None:intergenic 30.0%
TGCTATTACTTCAAAGGAAA+GGG + chr2.2:15717570-15717589 MS.gene059846:intron 30.0%
TGTAACAAACTTGAAAGATG+CGG + chr2.2:15720070-15720089 MS.gene059846:CDS 30.0%
TTATATAAATCCCCTTGAAC+TGG - chr2.2:15721125-15721144 None:intergenic 30.0%
TTCACCAAATAAAAGACTCA+TGG - chr2.2:15717626-15717645 None:intergenic 30.0%
TTGACATGCTGTAACATAAA+GGG - chr2.2:15720770-15720789 None:intergenic 30.0%
TTGTTGGATATCCAAATGTT+GGG + chr2.2:15719079-15719098 MS.gene059846:CDS 30.0%
TTTAAGGAAGAACATGAAAG+GGG + chr2.2:15717700-15717719 MS.gene059846:intron 30.0%
TTTGACATGCTGTAACATAA+AGG - chr2.2:15720771-15720790 None:intergenic 30.0%
TTTGTTGGATATCCAAATGT+TGG + chr2.2:15719078-15719097 MS.gene059846:CDS 30.0%
! ACTTTACATGCCATTTATAC+TGG + chr2.2:15720367-15720386 MS.gene059846:intron 30.0%
! GTAGCTTGTATACAAAAACT+AGG + chr2.2:15720442-15720461 MS.gene059846:intron 30.0%
! GTTTGTGTTTGTGATTTGTA+GGG + chr2.2:15716928-15716947 MS.gene059846:intron 30.0%
! TCAAAAGTATACCTTTCCAA+AGG - chr2.2:15718828-15718847 None:intergenic 30.0%
! TGAAGGTATACAAGTGTTAA+TGG - chr2.2:15718949-15718968 None:intergenic 30.0%
! TTATTTGGTGAAATTCACGT+TGG + chr2.2:15717634-15717653 MS.gene059846:intron 30.0%
! TTCATTGATTAACGCATTAC+TGG - chr2.2:15718882-15718901 None:intergenic 30.0%
!! ATCTTTTTGATTGATTGTCC+AGG + chr2.2:15719357-15719376 MS.gene059846:CDS 30.0%
!! CTCTTGTTTCCTTTTTACTT+TGG + chr2.2:15719441-15719460 MS.gene059846:intron 30.0%
!! GAAATAAATTAAGGGTATCG+AGG - chr2.2:15718670-15718689 None:intergenic 30.0%
!! TGAGTTTTTCAGAGAAGAAA+TGG + chr2.2:15716980-15716999 MS.gene059846:CDS 30.0%
!!! GCTTGTTAATTTTAGGGTTT+TGG + chr2.2:15716906-15716925 MS.gene059846:intron 30.0%
!!! TCTTTTAGCTTCTGATTATG+AGG + chr2.2:15717249-15717268 MS.gene059846:CDS 30.0%
AAATTGCAAGCACAAACACA+TGG + chr2.2:15718586-15718605 MS.gene059846:CDS 35.0%
AACCCTGATGACAAGATATA+TGG - chr2.2:15720480-15720499 None:intergenic 35.0%
AAGAAATGTACCAGTTCAAG+GGG + chr2.2:15721112-15721131 MS.gene059846:CDS 35.0%
AATCTAAGAATAGCTCTTCC+TGG - chr2.2:15719670-15719689 None:intergenic 35.0%
AGGAATTATGAACAGTAAGG+TGG + chr2.2:15720319-15720338 MS.gene059846:intron 35.0%
ATACACAGATAACCAAATCC+AGG - chr2.2:15720393-15720412 None:intergenic 35.0%
ATCAACAAGTATTCCCACTA+AGG - chr2.2:15717829-15717848 None:intergenic 35.0%
ATCACGCAACCAAAGTAAAA+AGG - chr2.2:15719453-15719472 None:intergenic 35.0%
ATCTAAGAATAGCTCTTCCT+GGG - chr2.2:15719669-15719688 None:intergenic 35.0%
ATGCCATATATCTTGTCATC+AGG + chr2.2:15720474-15720493 MS.gene059846:intron 35.0%
CAAAGAAATGTACCAGTTCA+AGG + chr2.2:15721110-15721129 MS.gene059846:CDS 35.0%
CAAAGATGATACTTCACGAT+TGG + chr2.2:15720925-15720944 MS.gene059846:CDS 35.0%
CAAGTGTTAATGGAGAGAAA+AGG - chr2.2:15718939-15718958 None:intergenic 35.0%
CACAATCCATCAACATAGAA+AGG - chr2.2:15718140-15718159 None:intergenic 35.0%
CCAAATAAAAGACTCATGGT+TGG - chr2.2:15717622-15717641 None:intergenic 35.0%
GAAACACATAAATGCTTGTC+AGG - chr2.2:15718164-15718183 None:intergenic 35.0%
GATAAGCAAGCAATATCTGT+TGG + chr2.2:15719054-15719073 MS.gene059846:CDS 35.0%
GATACAGGTTATAGATGCAA+GGG + chr2.2:15718517-15718536 MS.gene059846:intron 35.0%
GCTTCTCAATGATTATCAGA+AGG + chr2.2:15717061-15717080 MS.gene059846:CDS 35.0%
GTGAATATTGTAGCAATCGA+GGG + chr2.2:15717159-15717178 MS.gene059846:intron 35.0%
GTTCGGTATGTTCAATTTCA+GGG + chr2.2:15716849-15716868 MS.gene059846:intron 35.0%
TAATATACGACCAGTGTAAG+TGG - chr2.2:15719748-15719767 None:intergenic 35.0%
TAATCATTGAGAAGCGACAT+AGG - chr2.2:15717056-15717075 None:intergenic 35.0%
TATTGTATCTGTCCTGATAC+AGG + chr2.2:15718502-15718521 MS.gene059846:intron 35.0%
TCTGCAAACGAAAGTAATGT+AGG - chr2.2:15717915-15717934 None:intergenic 35.0%
TCTTCACCTTTCTATGTTGA+TGG + chr2.2:15718131-15718150 MS.gene059846:intron 35.0%
TGACTAGCATATTACCTATG+TGG + chr2.2:15719706-15719725 MS.gene059846:intron 35.0%
TGATACAGGTTATAGATGCA+AGG + chr2.2:15718516-15718535 MS.gene059846:intron 35.0%
TGCCATATATCTTGTCATCA+GGG + chr2.2:15720475-15720494 MS.gene059846:intron 35.0%
TGCTCTGTTAATGTGAAGTA+CGG + chr2.2:15718264-15718283 MS.gene059846:intron 35.0%
TGTAGTTCAAGCATCTTGTA+AGG + chr2.2:15720299-15720318 MS.gene059846:intron 35.0%
TGTGAATATTGTAGCAATCG+AGG + chr2.2:15717158-15717177 MS.gene059846:intron 35.0%
TTGCATCTATAACCTGTATC+AGG - chr2.2:15718517-15718536 None:intergenic 35.0%
! ATAAAGAGCATACATGGGTT+TGG - chr2.2:15719967-15719986 None:intergenic 35.0%
! ATGATTTGCAAAGCTGAAGT+AGG - chr2.2:15720517-15720536 None:intergenic 35.0%
! ATTGACGATCTGGTTTGATT+CGG - chr2.2:15716828-15716847 None:intergenic 35.0%
! CAGTTTTCTGTTTCCTTAGT+GGG + chr2.2:15717813-15717832 MS.gene059846:intron 35.0%
! CATGGTGCTTTTATTGAACA+AGG + chr2.2:15718604-15718623 MS.gene059846:CDS 35.0%
! CCAACCATGAGTCTTTTATT+TGG + chr2.2:15717619-15717638 MS.gene059846:intron 35.0%
! GGTTTATTTAGCTCATCCAT+AGG + chr2.2:15717721-15717740 MS.gene059846:intron 35.0%
! GGTTTGTGTTTGTGATTTGT+AGG + chr2.2:15716927-15716946 MS.gene059846:intron 35.0%
! TAAAGAGCATACATGGGTTT+GGG - chr2.2:15719966-15719985 None:intergenic 35.0%
! TATCGTTGTTGTTGTTGTTG+TGG + chr2.2:15720019-15720038 MS.gene059846:intron 35.0%
! TTGATGCGACTTTTACTCAA+TGG + chr2.2:15720865-15720884 MS.gene059846:intron 35.0%
! TTTACTCAATGGCTTTTCCA+GGG + chr2.2:15720876-15720895 MS.gene059846:intron 35.0%
! TTTTACTCAATGGCTTTTCC+AGG + chr2.2:15720875-15720894 MS.gene059846:intron 35.0%
!! TAAGTTGATGAATCCATGGT+TGG + chr2.2:15718413-15718432 MS.gene059846:intron 35.0%
!!! GCAATATCTGTTGGTTTTGT+TGG + chr2.2:15719063-15719082 MS.gene059846:CDS 35.0%
AAACCAGATCGTCAATGGTT+CGG + chr2.2:15716832-15716851 MS.gene059846:CDS 40.0%
AACAAACTTGAAAGATGCGG+CGG + chr2.2:15720073-15720092 MS.gene059846:CDS 40.0%
AAGAAAGCTGATGGTTCTCA+AGG + chr2.2:15717280-15717299 MS.gene059846:CDS 40.0%
ACTGATGACTTCCCAACATT+TGG - chr2.2:15719093-15719112 None:intergenic 40.0%
ATCATCTGGCAAACTCCTTA+AGG + chr2.2:15720532-15720551 MS.gene059846:CDS 40.0%
ATCGCACTGCAAAAAGAATG+AGG - chr2.2:15718717-15718736 None:intergenic 40.0%
ATGTTTGCACATCCAGTCTT+GGG - chr2.2:15719504-15719523 None:intergenic 40.0%
CAAACAAATTCGACCAACCA+TGG - chr2.2:15718429-15718448 None:intergenic 40.0%
CAAATCCAGGCCAGTATAAA+TGG - chr2.2:15720380-15720399 None:intergenic 40.0%
CAGGAAATAAGAAGCAGTGA+AGG - chr2.2:15719156-15719175 None:intergenic 40.0%
CGACATACCATGTTTGAGAA+GGG + chr2.2:15718008-15718027 MS.gene059846:CDS 40.0%
CTACTATTCAACAGGAAGTG+AGG - chr2.2:15720185-15720204 None:intergenic 40.0%
CTGTTTCAGAGTCATTGTTG+TGG - chr2.2:15719392-15719411 None:intergenic 40.0%
CTTCAGCTTTGCAAATCATC+TGG + chr2.2:15720518-15720537 MS.gene059846:CDS 40.0%
GAAACAGATGTTGTGCTGAA+GGG + chr2.2:15719405-15719424 MS.gene059846:CDS 40.0%
GAATCAAACCAGATCGTCAA+TGG + chr2.2:15716827-15716846 MS.gene059846:CDS 40.0%
GCAGAAATAAGTTGCTCAGA+TGG - chr2.2:15721281-15721300 None:intergenic 40.0%
GCTTTAGCTAAGAAAGCTGA+TGG + chr2.2:15717271-15717290 MS.gene059846:CDS 40.0%
GGTCCAAATGCATCAGAAAA+AGG - chr2.2:15717205-15717224 None:intergenic 40.0%
GTGGCCGATTAATATGTCAT+AGG + chr2.2:15719269-15719288 MS.gene059846:intron 40.0%
GTTTCAAAACCTCGCCTATA+TGG - chr2.2:15720100-15720119 None:intergenic 40.0%
TAACCAAGTTACATCGCCTA+TGG - chr2.2:15717740-15717759 None:intergenic 40.0%
TAATGGCATAGATGTTGACG+AGG + chr2.2:15721022-15721041 MS.gene059846:CDS 40.0%
TATGTTTGCACATCCAGTCT+TGG - chr2.2:15719505-15719524 None:intergenic 40.0%
TCTGAGGAGCCTAATGTTAA+TGG + chr2.2:15721005-15721024 MS.gene059846:CDS 40.0%
TGAAACAGATGTTGTGCTGA+AGG + chr2.2:15719404-15719423 MS.gene059846:CDS 40.0%
TGATAACATCTTGTGCCTTG+TGG - chr2.2:15718545-15718564 None:intergenic 40.0%
TGCTTAGGGTTCACTTCTAT+CGG + chr2.2:15719002-15719021 MS.gene059846:intron 40.0%
TGGTACATTTCTTTGCTGCT+GGG - chr2.2:15721105-15721124 None:intergenic 40.0%
! AGAGAAGTATGCTTCTGGTA+CGG + chr2.2:15717944-15717963 MS.gene059846:CDS 40.0%
! CATTTATACTGGCCTGGATT+TGG + chr2.2:15720378-15720397 MS.gene059846:intron 40.0%
! GAGCCTTTTTCTGATGCATT+TGG + chr2.2:15717199-15717218 MS.gene059846:CDS 40.0%
! GCAGTTTTCTGTTTCCTTAG+TGG + chr2.2:15717812-15717831 MS.gene059846:intron 40.0%
! GGTTCGGTATGTTCAATTTC+AGG + chr2.2:15716848-15716867 MS.gene059846:intron 40.0%
! GTGAAGTATCATCTTTGCTG+CGG - chr2.2:15720922-15720941 None:intergenic 40.0%
! TTCGAAGAGAAGTATGCTTC+TGG + chr2.2:15717939-15717958 MS.gene059846:CDS 40.0%
! TTCTTTAGCTCCATCACAGA+GGG - chr2.2:15720676-15720695 None:intergenic 40.0%
! TTGACGATCTGGTTTGATTC+GGG - chr2.2:15716827-15716846 None:intergenic 40.0%
! TTTCTTTAGCTCCATCACAG+AGG - chr2.2:15720677-15720696 None:intergenic 40.0%
! TTTTGTACATCTTGAGACGG+CGG - chr2.2:15716735-15716754 None:intergenic 40.0%
!! ACTTTTGTTTCCCCTGGAAT+TGG - chr2.2:15719309-15719328 None:intergenic 40.0%
!! GGGTTTTGTACATCTTGAGA+CGG - chr2.2:15716738-15716757 None:intergenic 40.0%
!! GGTCGCTTTCTTTTAGTCTT+AGG - chr2.2:15717226-15717245 None:intergenic 40.0%
!! TTAGCAGGTTGATTGACATG+TGG + chr2.2:15719250-15719269 MS.gene059846:intron 40.0%
!!! GGTTTTGAAACGTGTGAAGA+AGG + chr2.2:15720109-15720128 MS.gene059846:CDS 40.0%
AACATTAGGCTCCTCAGACT+CGG - chr2.2:15721003-15721022 None:intergenic 45.0%
ACTAGATATGCCCTCTGTGA+TGG + chr2.2:15720663-15720682 MS.gene059846:intron 45.0%
AGGGTCAAAGCAAACGCATA+TGG + chr2.2:15718027-15718046 MS.gene059846:CDS 45.0%
AGTGCGATCTAATTCCTGCT+TGG + chr2.2:15718729-15718748 MS.gene059846:intron 45.0%
ATACCGAACCATTGACGATC+TGG - chr2.2:15716838-15716857 None:intergenic 45.0%
ATACTTCACGATTGGCAGAG+GGG + chr2.2:15720933-15720952 MS.gene059846:CDS 45.0%
ATAGATGCAAGGGATCCACA+AGG + chr2.2:15718527-15718546 MS.gene059846:CDS 45.0%
ATGACCCTTACGGTTACGAA+CGG - chr2.2:15716764-15716783 None:intergenic 45.0%
ATTCCTGCTTGGGCAACAAA+AGG + chr2.2:15718740-15718759 MS.gene059846:CDS 45.0%
CATCCATAGGCGATGTAACT+TGG + chr2.2:15717734-15717753 MS.gene059846:intron 45.0%
CTGGTACATTTCTTTGCTGC+TGG - chr2.2:15721106-15721125 None:intergenic 45.0%
GATACTTCACGATTGGCAGA+GGG + chr2.2:15720932-15720951 MS.gene059846:CDS 45.0%
GCGACATACCATGTTTGAGA+AGG + chr2.2:15718007-15718026 MS.gene059846:CDS 45.0%
GCTTTGACCCTTCTCAAACA+TGG - chr2.2:15718018-15718037 None:intergenic 45.0%
GGATGTATCACAAGGCTGAT+TGG - chr2.2:15719586-15719605 None:intergenic 45.0%
GGGTAAAATGACAGCCACAT+AGG - chr2.2:15719723-15719742 None:intergenic 45.0%
GGGTCAAAGCAAACGCATAT+GGG + chr2.2:15718028-15718047 MS.gene059846:CDS 45.0%
GGTCAAAGCAAACGCATATG+GGG + chr2.2:15718029-15718048 MS.gene059846:CDS 45.0%
GTGCGATCTAATTCCTGCTT+GGG + chr2.2:15718730-15718749 MS.gene059846:intron 45.0%
TATGACCACCCCACTACAAT+AGG - chr2.2:15719825-15719844 None:intergenic 45.0%
TCAGATGGAACATCAGTGGA+TGG - chr2.2:15721266-15721285 None:intergenic 45.0%
TCATCTTTGCTGCGGTCATA+AGG - chr2.2:15720914-15720933 None:intergenic 45.0%
TCTGTATAATCCCCAGTGTC+TGG - chr2.2:15721185-15721204 None:intergenic 45.0%
TGAAGATAGTGACGCATCTG+AGG + chr2.2:15721205-15721224 MS.gene059846:CDS 45.0%
TGATACTTCACGATTGGCAG+AGG + chr2.2:15720931-15720950 MS.gene059846:CDS 45.0%
TGCTCAAGACATGACCCTTA+CGG - chr2.2:15716774-15716793 None:intergenic 45.0%
TTCCAGGGGAAACAAAAGTC+TGG + chr2.2:15719310-15719329 MS.gene059846:CDS 45.0%
TTCTTCGGATGTTGTTGTCC+AGG + chr2.2:15718073-15718092 MS.gene059846:CDS 45.0%
TTGCTCAGATGGAACATCAG+TGG - chr2.2:15721270-15721289 None:intergenic 45.0%
TTGTTGTGGTAGACAACTCC+TGG - chr2.2:15719378-15719397 None:intergenic 45.0%
! ACATGCCATTTATACTGGCC+TGG + chr2.2:15720372-15720391 MS.gene059846:intron 45.0%
! CATGATTCACTTGTTGGGTC+CGG - chr2.2:15721308-15721327 None:intergenic 45.0%
! GTTGGAGTGCTTTGGTTTAC+CGG - chr2.2:15716659-15716678 None:intergenic 45.0%
! TTGTTCCTATTGTAGTGGGG+TGG + chr2.2:15719817-15719836 MS.gene059846:intron 45.0%
! TTTTACCCAGCCACTTACAC+TGG + chr2.2:15719735-15719754 MS.gene059846:intron 45.0%
! TTTTGTTCGACTCCCAAGAC+TGG + chr2.2:15719489-15719508 MS.gene059846:intron 45.0%
!! GCAACTTATTTCTGCTGAGC+CGG + chr2.2:15721286-15721305 MS.gene059846:CDS 45.0%
!!! TTGTTTTGGGACTAAGTCCC+AGG + chr2.2:15719649-15719668 MS.gene059846:intron 45.0%
AAAGATGCGGCGGACCATAT+AGG + chr2.2:15720083-15720102 MS.gene059846:CDS 50.0%
AATCCCCAGTGTCTGGAAGT+TGG - chr2.2:15721178-15721197 None:intergenic 50.0%
AGATAGTGACGCATCTGAGG+AGG + chr2.2:15721208-15721227 MS.gene059846:CDS 50.0%
AGATGTTGTGCTGAAGGGTG+TGG + chr2.2:15719410-15719429 MS.gene059846:CDS 50.0%
ATACGACCAGTGTAAGTGGC+TGG - chr2.2:15719744-15719763 None:intergenic 50.0%
CAACAGGAAGTGAGGAGAGA+AGG - chr2.2:15720177-15720196 None:intergenic 50.0%
CAAGGTTGCTCCAATTCCAG+GGG + chr2.2:15719296-15719315 MS.gene059846:CDS 50.0%
CTGACCAACTTCCAGACACT+GGG + chr2.2:15721171-15721190 MS.gene059846:CDS 50.0%
CTGCTTGGGCAACAAAAGGA+TGG + chr2.2:15718744-15718763 MS.gene059846:CDS 50.0%
CTTGCATGGAATGCTAGCGT+TGG - chr2.2:15718794-15718813 None:intergenic 50.0%
CTTTAATGGCAGCAGATGCC+TGG - chr2.2:15721061-15721080 None:intergenic 50.0%
GAGCGAAACGTTAACCTCTC+CGG + chr2.2:15716637-15716656 MS.gene059846:CDS 50.0%
GCAAGGTTGCTCCAATTCCA+GGG + chr2.2:15719295-15719314 MS.gene059846:CDS 50.0%
GCAGAAGCTGATGAAGCAGA+TGG + chr2.2:15717969-15717988 MS.gene059846:CDS 50.0%
TACGACCAGTGTAAGTGGCT+GGG - chr2.2:15719743-15719762 None:intergenic 50.0%
TGACCAACTTCCAGACACTG+GGG + chr2.2:15721172-15721191 MS.gene059846:CDS 50.0%
TGACCCTTACGGTTACGAAC+GGG - chr2.2:15716763-15716782 None:intergenic 50.0%
TGCAAGGTTGCTCCAATTCC+AGG + chr2.2:15719294-15719313 MS.gene059846:CDS 50.0%
TGGATGGATCCTGCTCAGAT+GGG - chr2.2:15721250-15721269 None:intergenic 50.0%
TTTGCTGCGGTCATAAGGTC+AGG - chr2.2:15720909-15720928 None:intergenic 50.0%
! ACTCAATGGCTTTTCCAGGG+TGG + chr2.2:15720879-15720898 MS.gene059846:intron 50.0%
! AGTGCTTTGGTTTACCGGAG+AGG - chr2.2:15716654-15716673 None:intergenic 50.0%
! CATCCTTTTGTTGCCCAAGC+AGG - chr2.2:15718746-15718765 None:intergenic 50.0%
! GTGTTGCTAGCCCTTTCCTT+TGG - chr2.2:15717541-15717560 None:intergenic 50.0%
!! ACGATCTGGTTTGATTCGGG+TGG - chr2.2:15716824-15716843 None:intergenic 50.0%
!! TCTGGTTTGATTCGGGTGGA+TGG - chr2.2:15716820-15716839 None:intergenic 50.0%
!! TGCCAGACTTTTGTTTCCCC+TGG - chr2.2:15719315-15719334 None:intergenic 50.0%
ACGTGTTCAGTGTGCGACAC+GGG - chr2.2:15717469-15717488 None:intergenic 55.0%
CAACAGGGTGACACACTACC+TGG - chr2.2:15718094-15718113 None:intergenic 55.0%
CCTTACGGTTACGAACGGGT+CGG - chr2.2:15716759-15716778 None:intergenic 55.0%
CGACCCGTTCGTAACCGTAA+GGG + chr2.2:15716757-15716776 MS.gene059846:CDS 55.0%
CGAGGCAGTTGACCATAACC+AGG + chr2.2:15721040-15721059 MS.gene059846:CDS 55.0%
CGCGGAGGAGGGACAAAAAA+GGG - chr2.2:15720966-15720985 None:intergenic 55.0%
CTTACGGTTACGAACGGGTC+GGG - chr2.2:15716758-15716777 None:intergenic 55.0%
GACGTGTTCAGTGTGCGACA+CGG - chr2.2:15717470-15717489 None:intergenic 55.0%
GAGCATACATGGGTTTGGGC+TGG - chr2.2:15719962-15719981 None:intergenic 55.0%
GCTGACCAACTTCCAGACAC+TGG + chr2.2:15721170-15721189 MS.gene059846:CDS 55.0%
GTACATCTTGAGACGGCGGA+CGG - chr2.2:15716731-15716750 None:intergenic 55.0%
GTGGATGGATCCTGCTCAGA+TGG - chr2.2:15721251-15721270 None:intergenic 55.0%
TAAGGTCAGGTTCACCACCC+TGG - chr2.2:15720896-15720915 None:intergenic 55.0%
TCAGATGGGACCTCAGTGGA+TGG - chr2.2:15721236-15721255 None:intergenic 55.0%
TCAGTGTGCGACACGGGTAA+GGG - chr2.2:15717463-15717482 None:intergenic 55.0%
TCGCGGAGGAGGGACAAAAA+AGG - chr2.2:15720967-15720986 None:intergenic 55.0%
TCGGGTGGATGGAAGCTCTT+TGG - chr2.2:15716809-15716828 None:intergenic 55.0%
TGAGGAGGATCCATCCACTG+AGG + chr2.2:15721223-15721242 MS.gene059846:CDS 55.0%
TGGCAGCAGATGCCTGGTTA+TGG - chr2.2:15721055-15721074 None:intergenic 55.0%
TTCAGTGTGCGACACGGGTA+AGG - chr2.2:15717464-15717483 None:intergenic 55.0%
! GTTGTGCTGAAGGGTGTGGT+AGG + chr2.2:15719414-15719433 MS.gene059846:intron 55.0%
! TTGGCGTCGTTGGAGTGCTT+TGG - chr2.2:15716667-15716686 None:intergenic 55.0%
AGCACTCCAACGACGCCAAC+CGG + chr2.2:15716668-15716687 MS.gene059846:CDS 60.0%
AGGCTCCTCAGACTCGGACA+AGG - chr2.2:15720997-15721016 None:intergenic 60.0%
ATTGCTCCGGTTGGCGTCGT+TGG - chr2.2:15716677-15716696 None:intergenic 60.0%
CACTGAGGTCCCATCTGAGC+AGG + chr2.2:15721238-15721257 MS.gene059846:CDS 60.0%
CCGACCCGTTCGTAACCGTA+AGG + chr2.2:15716756-15716775 MS.gene059846:CDS 60.0%
CGGTCTTGGGGTCATTGCTC+CGG - chr2.2:15716690-15716709 None:intergenic 60.0%
CTGCTCAGATGGGACCTCAG+TGG - chr2.2:15721240-15721259 None:intergenic 60.0%
CTTGGGGTCATTGCTCCGGT+TGG - chr2.2:15716686-15716705 None:intergenic 60.0%
GCAATGACCCCAAGACCGAG+AGG + chr2.2:15716692-15716711 MS.gene059846:CDS 60.0%
GGATGCCTTGTCCGAGTCTG+AGG + chr2.2:15720989-15721008 MS.gene059846:CDS 60.0%
! TCGGACAAGGCATCCTGTCG+CGG - chr2.2:15720984-15721003 None:intergenic 60.0%
! TTTTGTCCCTCCTCCGCGAC+AGG + chr2.2:15720968-15720987 MS.gene059846:CDS 60.0%
AGGCATCCTGTCGCGGAGGA+GGG - chr2.2:15720977-15720996 None:intergenic 65.0%
CATCTTGAGACGGCGGACGG+TGG - chr2.2:15716728-15716747 None:intergenic 65.0%
TGCGGCGGACCATATAGGCG+AGG + chr2.2:15720088-15720107 MS.gene059846:CDS 65.0%
! AAGGCATCCTGTCGCGGAGG+AGG - chr2.2:15720978-15720997 None:intergenic 65.0%
! GACAAGGCATCCTGTCGCGG+AGG - chr2.2:15720981-15721000 None:intergenic 65.0%
CTTGAGACGGCGGACGGTGG+CGG - chr2.2:15716725-15716744 None:intergenic 70.0%
! CGGAGCGCCTCTCGGTCTTG+GGG - chr2.2:15716702-15716721 None:intergenic 70.0%
! GCGGAGCGCCTCTCGGTCTT+GGG - chr2.2:15716703-15716722 None:intergenic 70.0%
! GGCGGAGCGCCTCTCGGTCT+TGG - chr2.2:15716704-15716723 None:intergenic 75.0%
!! GAGACGGCGGACGGTGGCGG+CGG - chr2.2:15716722-15716741 None:intergenic 80.0%
!! GGTGGCGGCGGAGCGCCTCT+CGG - chr2.2:15716710-15716729 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 15716622 15721328 15716622 ID=MS.gene059846
chr2.2 mRNA 15716622 15721328 15716622 ID=MS.gene059846.t1;Parent=MS.gene059846
chr2.2 exon 15716622 15716853 15716622 ID=MS.gene059846.t1.exon1;Parent=MS.gene059846.t1
chr2.2 CDS 15716622 15716853 15716622 ID=cds.MS.gene059846.t1;Parent=MS.gene059846.t1
chr2.2 exon 15716949 15717082 15716949 ID=MS.gene059846.t1.exon2;Parent=MS.gene059846.t1
chr2.2 CDS 15716949 15717082 15716949 ID=cds.MS.gene059846.t1;Parent=MS.gene059846.t1
chr2.2 exon 15717172 15717301 15717172 ID=MS.gene059846.t1.exon3;Parent=MS.gene059846.t1
chr2.2 CDS 15717172 15717301 15717172 ID=cds.MS.gene059846.t1;Parent=MS.gene059846.t1
chr2.2 exon 15717934 15718094 15717934 ID=MS.gene059846.t1.exon4;Parent=MS.gene059846.t1
chr2.2 CDS 15717934 15718094 15717934 ID=cds.MS.gene059846.t1;Parent=MS.gene059846.t1
chr2.2 exon 15718524 15718625 15718524 ID=MS.gene059846.t1.exon5;Parent=MS.gene059846.t1
chr2.2 CDS 15718524 15718625 15718524 ID=cds.MS.gene059846.t1;Parent=MS.gene059846.t1
chr2.2 exon 15718731 15718835 15718731 ID=MS.gene059846.t1.exon6;Parent=MS.gene059846.t1
chr2.2 CDS 15718731 15718835 15718731 ID=cds.MS.gene059846.t1;Parent=MS.gene059846.t1
chr2.2 exon 15719009 15719137 15719009 ID=MS.gene059846.t1.exon7;Parent=MS.gene059846.t1
chr2.2 CDS 15719009 15719137 15719009 ID=cds.MS.gene059846.t1;Parent=MS.gene059846.t1
chr2.2 exon 15719291 15719431 15719291 ID=MS.gene059846.t1.exon8;Parent=MS.gene059846.t1
chr2.2 CDS 15719291 15719431 15719291 ID=cds.MS.gene059846.t1;Parent=MS.gene059846.t1
chr2.2 exon 15720065 15720165 15720065 ID=MS.gene059846.t1.exon9;Parent=MS.gene059846.t1
chr2.2 CDS 15720065 15720165 15720065 ID=cds.MS.gene059846.t1;Parent=MS.gene059846.t1
chr2.2 exon 15720496 15720553 15720496 ID=MS.gene059846.t1.exon10;Parent=MS.gene059846.t1
chr2.2 CDS 15720496 15720553 15720496 ID=cds.MS.gene059846.t1;Parent=MS.gene059846.t1
chr2.2 exon 15720897 15721328 15720897 ID=MS.gene059846.t1.exon11;Parent=MS.gene059846.t1
chr2.2 CDS 15720897 15721328 15720897 ID=cds.MS.gene059846.t1;Parent=MS.gene059846.t1
Gene Sequence

>MS.gene059846

ATGGCGAAGAAGAAAGAGCGAAACGTTAACCTCTCCGGTAAACCAAAGCACTCCAACGACGCCAACCGGAGCAATGACCCCAAGACCGAGAGGCGCTCCGCCGCCACCGTCCGCCGTCTCAAGATGTACAAAACCCGACCCGTTCGTAACCGTAAGGGTCATGTCTTGAGCAACGAGTTTCAATCCAAAGAGCTTCCATCCACCCGAATCAAACCAGATCGTCAATGGTTCGGTATGTTCAATTTCAGGGATTCGATTTTGTTCACTGTGATTCTTCAAATTCAGCTTGTTAATTTTAGGGTTTTGGTTTGTGTTTGTGATTTGTAGGGAATACTCGTGTTGTGAATCAGAAAGAGCTTGAGTTTTTCAGAGAAGAAATGGCGAAGCATAGTGCAAGTAATTACAATATTATTCTTAAGGGGAAGAATTTGCCTATGTCGCTTCTCAATGATTATCAGAAGGTTTGTTTGTTTCTTCGTGAACTGCTTAATTGTTGAAATGATTTGGTGAATTATGTGAATTTATTGGTTTATGGTTGTGAATATTGTAGCAATCGAGGGTTCATCTTCTTGATAGAGAGCCTTTTTCTGATGCATTTGGACCTAAGACTAAAAGAAAGCGACCAAGTCTTTTAGCTTCTGATTATGAGGCTTTAGCTAAGAAAGCTGATGGTTCTCAAGGTAGAAATCTGATTTCGATATAAATTCTGTTTTGTTGTGCTAAAAGATATGTTTTTCTTTAGAAAGTTAAAGATAATCTATGTAGCACGGACACGTCAATACTGAAAATAATTTGTAAAAGTGACATAATCGAATGTAATCACATGTGTCGTGCTTGACCCTTACCCGTGTCGCACACTGAACACGTCTTAAATCATGAGTGTCAGTACTACAAAGAAAATAATAGTTTCTTAAAACCAAAGGAAAGGGCTAGCAACACTTACTTCAATGCTATTACTTCAAAGGAAAGGGCTAAGCAACACTTCAATGCTATTTTTCCAACCATGAGTCTTTTATTTGGTGAAATTCACGTTGGTTCTACAACTTTATGTTGCTAACACTTCTCCAAAACCAAATTATTTAAGGAAGAACATGAAAGGGGTTTATTTAGCTCATCCATAGGCGATGTAACTTGGTTACTTGTTTTACATTTGTGTGTTCAGTTTATTTGCTTAATAAAGAATGGTTGATGCAGTTTTCTGTTTCCTTAGTGGGAATACTTGTTGATATTTGATATGTTTCTTTGACCAAATGATGTTGTTTTTAACCTGATAACTGTTTTTGTGTTTTTCCTACATTACTTTCGTTTGCAGATGCTTTCGAAGAGAAGTATGCTTCTGGTACGGCTGCAGAAGCTGATGAAGCAGATGGATTTAGAGATTTAGTGCGACATACCATGTTTGAGAAGGGTCAAAGCAAACGCATATGGGGTGAACTTTACAAAGTGATAGATTCTTCGGATGTTGTTGTCCAGGTAGTGTGTCACCCTGTTGCTAAAATTTTGTTTAACTCTTCACCTTTCTATGTTGATGGATTGTGACCTGACAAGCATTTATGTGTTTCCATTGTTTAATATTATTGTGATAATGTTAAAAAATTACGCTTTATGATGTGTATTTCTGCTGCAAATCTGCATGCTATATTGCTCTGTTAATGTGAAGTACGGACATTGTTATGAATTTGAATAAAGTTTGTCATAGTAAAATAAGGGAAAAAACTAGAAGTTGGGAGCTCATGCGTTACACTGATAAAGCATTTTTATTTTTCTTAATATGATTGTTTCATGCTTATTTAAGTTGATGAATCCATGGTTGGTCGAATTTGTTTGACTTTTAGATTCGCAGCAGATATCACACACTTTTGTCTTCAAATCTTTGAAAGTATTGTATCTGTCCTGATACAGGTTATAGATGCAAGGGATCCACAAGGCACAAGATGTTATCATTTAGAGAAGCATTTGAAAGAAAATTGCAAGCACAAACACATGGTGCTTTTATTGAACAAGGTAAGTAATATCTTTTTTTGCTCTTTTTGTTTTAAATTGTTCCTCGATACCCTTAATTTATTTCTTTACATTATAAATCATTTCAAATCCTCATTCTTTTTGCAGTGCGATCTAATTCCTGCTTGGGCAACAAAAGGATGGCTTAGAGTTTTGTCAAAAGAATATCCAACGCTAGCATTCCATGCAAGTATTAATAAGTCCTTTGGAAAGGTATACTTTTGACTTCATCTTTAGTTGATTTGTTGGCCAATTTCCAGTAATGCGTTAATCAATGAATAAAAAAGACAAGTGAAGCTGGAGATAATCATCTCCTTTTCTCTCCATTAACACTTGTATACCTTCAGCTATTTGCTATCTTATTTATTGCTCATTATCATGCTTAGGGTTCACTTCTATCGGTTCTAAGACAATTTGCAAGATTGAAAAGTGATAAGCAAGCAATATCTGTTGGTTTTGTTGGATATCCAAATGTTGGGAAGTCATCAGTGATCAACACATTGCGTACAAAGAATGTAATCTTTCTTTTTCCTTCACTGCTTCTTATTTCCTGCTTAAGTTTTAATTTGGAGATGAGTTAAAGCATAGAAGTACAAGTATATTTGCAACTCCAGAATTATAAGCATTTTAGCAGGTTGATTGACATGTGGCCGATTAATATGTCATAGGTTTGCAAGGTTGCTCCAATTCCAGGGGAAACAAAAGTCTGGCAGTATATTACCCTTACAAAGAGGATCTTTTTGATTGATTGTCCAGGAGTTGTCTACCACAACAATGACTCTGAAACAGATGTTGTGCTGAAGGGTGTGGTAGGTTTTCTCTTGTTTCCTTTTTACTTTGGTTGCGTGATACTTCAATAAAGAATATTTTGTTCGACTCCCAAGACTGGATGTGCAAACATAATTTATTTGAATCTGAACGATATTTGAAAGATTACTAAACAATCATGTTGGTTGTAGACCAATCAGCCTTGTGATACATCCTATATTTTTCTGGTTTTTGAACTTGTGATATATTATTCATGTGTTGTTTTGGGACTAAGTCCCAGGAAGAGCTATTCTTAGATTTTGTTAGATTTAATATTGACTAGCATATTACCTATGTGGCTGTCATTTTACCCAGCCACTTACACTGGTCGTATATTAAGAATTATTCATGCCCACAGAATATAAATTCATTATATAGTGTATAATATTGTTCCTATTGTAGTGGGGTGGTCATATACTCATATTTTAAGGGAATTTAATTTTTTAATTAATATTTGAAATAATATTTTTAAAAGATAAAATAGTAAATAAAATAGTTTAAATGAAGGGTAAAATATGTAAGAAAAATGCCAGCCCAAACCCATGTATGCTCTTTATATTATATATAGTATAGATATAGTATAGATTATTATCGTTGTTGTTGTTGTTGTGGCTTAATACTTTACTTATTTTCAGGTTCGTGTAACAAACTTGAAAGATGCGGCGGACCATATAGGCGAGGTTTTGAAACGTGTGAAGAAGGAGCACTTGACAAGAGCTTATAAAATAAAAGAATGGTATTGTTCCTTCTCTCCTCACTTCCTGTTGAATAGTAGATCTTCATATAGTGTGTCCAACTTTTATATTCTTGTTTTTGCTAAGAACAACATATTATTTAAAAGCTTTTGTTAGATTTTAATTTTTCTTTGCTGTAGTTCAAGCATCTTGTAAGGAATTATGAACAGTAAGGTGGTGATGATATGATTATTCTTGATGCGACTTTACATGCCATTTATACTGGCCTGGATTTGGTTATCTGTGTATTATTATAGCTTGTTTATAATGTAACAATAGTAGCTTGTATACAAAAACTAGGTATTTAATAATGCCATATATCTTGTCATCAGGGTTGATGAAAATGACTTCCTACTTCAGCTTTGCAAATCATCTGGCAAACTCCTTAAGGTATTCTTTTTGAATTGATCTAAATTCTTACTTTGATATTAAAAAAAAGGTTGTCTAGACTGATCATCAGCTTTATTAGTATACTCTAGCTTTCCTCAATTTGACTTAGACTAGATATGCCCTCTGTGATGGAGCTAAAGAAACACATTTTTCATCTCTTGATCTTCTGCTTGCTTTATAGAAGAAAGCAGTGAACTTCAATTACTAATTTTTCCCTTTATGTTACAGCATGTCAAATCGTTTCATTTAGTTACTCTTCCAATTTGTTTTTCTTGAACTTTTATATTTCTTATGTAAGACAAGGTTACACTTTGATGCGACTTTTACTCAATGGCTTTTCCAGGGTGGTGAACCTGACCTTATGACCGCAGCAAAGATGATACTTCACGATTGGCAGAGGGGTAAAATTCCCTTTTTTGTCCCTCCTCCGCGACAGGATGCCTTGTCCGAGTCTGAGGAGCCTAATGTTAATGGCATAGATGTTGACGAGGCAGTTGACCATAACCAGGCATCTGCTGCCATTAAAGCTATTGCAAATGTTCTTTCGTCCCAGCAGCAAAGAAATGTACCAGTTCAAGGGGATTTATATAACGAGAATGAGCTGAATGAAGAAACTGCTGACCAACTTCCAGACACTGGGGATTATACAGATGAAGATAGTGACGCATCTGAGGAGGATCCATCCACTGAGGTCCCATCTGAGCAGGATCCATCCACTGATGTTCCATCTGAGCAACTTATTTCTGCTGAGCCGGACCCAACAAGTGAATCATGA
Protein sequence

>MS.gene059846.t1

MAKKKERNVNLSGKPKHSNDANRSNDPKTERRSAATVRRLKMYKTRPVRNRKGHVLSNEFQSKELPSTRIKPDRQWFGNTRVVNQKELEFFREEMAKHSASNYNIILKGKNLPMSLLNDYQKQSRVHLLDREPFSDAFGPKTKRKRPSLLASDYEALAKKADGSQDAFEEKYASGTAAEADEADGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVIDARDPQGTRCYHLEKHLKENCKHKHMVLLLNKCDLIPAWATKGWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYHNNDSETDVVLKGVVRVTNLKDAADHIGEVLKRVKKEHLTRAYKIKEWVDENDFLLQLCKSSGKLLKGGEPDLMTAAKMILHDWQRGKIPFFVPPPRQDALSESEEPNVNGIDVDEAVDHNQASAAIKAIANVLSSQQQRNVPVQGDLYNENELNEETADQLPDTGDYTDEDSDASEEDPSTEVPSEQDPSTDVPSEQLISAEPDPTSES