AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67010.t1 MTR_1g018790 98.901 546 6 0 1 546 1 546 0.0 1093
MS.gene67010.t1 MTR_4g094932 54.268 492 219 3 52 538 34 524 0.0 537
MS.gene67010.t1 MTR_2g021030 27.489 462 261 13 59 449 5 463 2.25e-29 122
MS.gene67010.t1 MTR_2g021030 26.171 363 224 12 98 453 245 570 7.71e-18 87.4
MS.gene67010.t1 MTR_2g021030 27.945 433 239 12 59 421 5 434 4.89e-27 114
MS.gene67010.t1 MTR_4g091290 24.375 480 252 18 57 443 19 480 3.04e-18 88.6
MS.gene67010.t1 MTR_7g083610 24.187 492 260 16 61 446 1 485 1.38e-16 83.2
MS.gene67010.t1 MTR_1g088950 21.756 501 256 17 64 446 14 496 1.07e-15 80.5
MS.gene67010.t1 MTR_1g114610 24.471 425 230 13 66 455 23 391 2.04e-15 79.0
MS.gene67010.t1 MTR_3g088895 30.806 211 139 5 257 462 77 285 5.35e-15 77.0
MS.gene67010.t1 MTR_4g013255 29.600 250 168 6 134 381 342 585 1.09e-14 77.4
MS.gene67010.t1 MTR_4g013255 26.538 260 182 6 187 443 318 571 6.15e-14 75.1
MS.gene67010.t1 MTR_4g013255 25.629 437 241 13 103 472 99 518 2.05e-11 67.0
MS.gene67010.t1 MTR_4g080020 24.307 469 248 15 54 470 3 416 2.00e-13 73.6
MS.gene67010.t1 MTR_8g028140 24.234 359 207 14 45 341 4 359 2.31e-13 72.4
MS.gene67010.t1 MTR_1g012520 24.398 332 223 11 136 450 200 520 6.86e-13 71.6
MS.gene67010.t1 MTR_1g012520 30.370 135 66 3 320 453 177 284 1.12e-11 67.8
MS.gene67010.t1 MTR_3g107280 37.143 140 82 4 320 453 143 282 7.54e-13 71.6
MS.gene67010.t1 MTR_3g107280 22.374 514 258 15 61 434 68 580 9.75e-12 68.2
MS.gene67010.t1 MTR_3g107280 30.052 193 98 7 294 453 200 388 3.75e-11 66.2
MS.gene67010.t1 MTR_1g054625 27.668 253 159 9 120 361 77 316 8.49e-13 70.1
MS.gene67010.t1 MTR_7g112570 26.149 348 215 13 138 453 197 534 2.08e-12 70.1
MS.gene67010.t1 MTR_7g112570 23.022 417 231 14 79 453 63 431 6.54e-11 65.5
MS.gene67010.t1 MTR_7g112570 26.149 348 215 13 138 453 197 534 2.86e-12 69.7
MS.gene67010.t1 MTR_7g112570 23.022 417 231 14 79 453 63 431 8.92e-11 65.1
MS.gene67010.t1 MTR_7g112570 26.149 348 215 13 138 453 197 534 3.57e-12 69.7
MS.gene67010.t1 MTR_2g104760 24.163 418 256 13 71 453 9 400 1.42e-11 67.0
MS.gene67010.t1 MTR_1g054625 27.511 229 127 6 138 361 25 219 1.48e-11 65.1
MS.gene67010.t1 MTR_4g130630 32.653 147 92 4 296 438 73 216 6.48e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67010.t1 AT1G47056 66.322 484 157 4 55 536 34 513 0.0 628
MS.gene67010.t1 AT4G07400 61.036 521 186 6 13 531 34 539 0.0 605
MS.gene67010.t1 AT5G67250 56.169 543 208 6 1 538 1 518 0.0 555
MS.gene67010.t1 AT3G50080 56.790 486 200 6 56 538 36 514 0.0 531
MS.gene67010.t1 AT4G15475 29.394 330 211 13 127 447 274 590 2.57e-23 104
MS.gene67010.t1 AT4G15475 27.451 408 244 12 51 453 3 363 2.93e-21 98.2
MS.gene67010.t1 AT2G25490 26.107 429 273 16 61 453 64 484 7.10e-17 84.3
MS.gene67010.t1 AT2G25490 24.931 361 204 9 134 433 212 566 3.26e-14 75.9
MS.gene67010.t1 AT5G27920 27.019 359 213 13 137 459 158 503 5.67e-16 81.6
MS.gene67010.t1 AT5G27920 26.087 299 148 9 158 446 332 567 4.52e-11 65.9
MS.gene67010.t1 AT1G12820 24.590 427 252 13 61 443 1 401 7.86e-15 77.8
MS.gene67010.t1 AT3G26810 24.146 410 224 12 61 393 1 400 2.23e-14 76.3
MS.gene67010.t1 AT5G23340 25.672 335 180 12 66 365 13 313 2.79e-14 75.5
MS.gene67010.t1 AT5G01720 28.516 256 165 6 134 382 338 582 4.94e-14 75.5
MS.gene67010.t1 AT5G01720 23.577 492 265 17 64 452 16 499 2.06e-12 70.5
MS.gene67010.t1 AT3G07550 25.294 340 217 14 61 377 15 340 1.24e-13 73.2
MS.gene67010.t1 AT1G80570 24.368 435 263 17 55 453 8 412 2.88e-13 72.8
MS.gene67010.t1 AT1G80570 24.476 429 258 17 61 453 1 399 8.14e-13 71.2
MS.gene67010.t1 AT1G80570 24.476 429 258 17 61 453 1 399 8.14e-13 71.2
MS.gene67010.t1 AT5G25350 33.163 196 88 7 294 453 180 368 1.22e-12 70.9
MS.gene67010.t1 AT3G07550 24.176 364 218 14 61 377 15 367 2.62e-12 69.3
MS.gene67010.t1 AT3G07550 24.176 364 218 14 61 377 15 367 2.62e-12 69.3
MS.gene67010.t1 AT1G21410 27.230 213 148 5 243 450 52 262 1.97e-11 66.2
MS.gene67010.t1 AT1G21410 27.230 213 148 5 243 450 52 262 1.97e-11 66.2
MS.gene67010.t1 AT4G03190 21.224 490 272 14 64 446 5 487 4.95e-11 65.9

Find 151 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCACCAATTCTTGCAAATT+AGG 0.147721 1.2:+29859954 None:intergenic
GACCTTCACTTTCACCAAAT+TGG 0.167556 1.2:+29859725 None:intergenic
TATTTCGAATTGTTCGAATT+TGG 0.247249 1.2:-29860129 MS.gene67010:CDS
AGTTGTCCTGTTTCTGATCT+TGG 0.260446 1.2:-29859774 MS.gene67010:CDS
GCCGCGGAGCCGGGCATTGC+AGG 0.275184 1.2:+29859555 None:intergenic
CAGAAAGATGTAAGTTGTTA+AGG 0.285853 1.2:-29860049 MS.gene67010:CDS
AGGCTTCAGATTAGTGATAT+TGG 0.286479 1.2:-29860161 MS.gene67010:CDS
TTGCAAGAATTGGTGCTTAT+TGG 0.291569 1.2:-29859948 MS.gene67010:CDS
TCGTGTGGATCTTGTACTTT+TGG 0.297932 1.2:-29860485 MS.gene67010:CDS
CTTTATAATGGACAGTGTTT+TGG 0.307331 1.2:-29860311 MS.gene67010:CDS
ATCGGTTGCCTGCACTTTCC+CGG 0.307896 1.2:+29860993 None:intergenic
GCACCAATTCTTGCAAATTA+GGG 0.310819 1.2:+29859955 None:intergenic
GGCGGTGGATCTGTTGGTTT+TGG 0.323583 1.2:+29860967 None:intergenic
TTGCCCTAATTTGCAAGAAT+TGG 0.326430 1.2:-29859958 MS.gene67010:CDS
GGCAAATGGGTGTCCCAATT+TGG 0.327661 1.2:-29859739 MS.gene67010:CDS
ACCTTCACTTTCACCAAATT+GGG 0.329278 1.2:+29859726 None:intergenic
GACACCCGAGTGTACTGATA+TGG 0.331300 1.2:-29860087 MS.gene67010:CDS
ATCAGTGTTCACTCGTTTGC+CGG 0.338793 1.2:-29860787 MS.gene67010:CDS
TGTTTGAAGGAACTTTATAA+TGG 0.338946 1.2:-29860323 MS.gene67010:CDS
TATTTCGATGTTCCGGTGAT+TGG 0.339573 1.2:-29860247 MS.gene67010:CDS
TGATCTTGGGATGGAAGCTT+TGG 0.344571 1.2:-29859760 MS.gene67010:CDS
CTAAGAATTGTAAGGGTTTG+AGG 0.347732 1.2:-29860514 MS.gene67010:CDS
AATTGTCGGTGAAGCGGCTT+AGG 0.348422 1.2:-29860415 MS.gene67010:CDS
GTTGTCCTGTTTCTGATCTT+GGG 0.350129 1.2:-29859773 MS.gene67010:CDS
CGCGACACGCGCGGAGCTTA+AGG 0.354968 1.2:+29860567 None:intergenic
TTGCATTGCTGCAAAGTGTT+TGG 0.356470 1.2:-29859820 MS.gene67010:CDS
CGCGAAGTTTGATCTTCTTC+CGG 0.356911 1.2:-29860717 MS.gene67010:CDS
CTCAACCAATCCCCACCTTC+AGG 0.369729 1.2:+29859681 None:intergenic
TTGAAGCTATTTCGATGTTC+CGG 0.378035 1.2:-29860254 MS.gene67010:CDS
TAACCCTACGAGAGTGAGTT+TGG 0.378471 1.2:-29859922 MS.gene67010:CDS
AGTTCATTCAAGCAAAGGTT+AGG 0.388373 1.2:-29859489 MS.gene67010:CDS
GGGATTGGTTGAGGCACACT+AGG 0.389313 1.2:-29859671 MS.gene67010:CDS
AAAGCCAATCTCTCTAGATT+CGG 0.392075 1.2:+29859879 None:intergenic
GTTGAAGACGATTTGTTTGA+AGG 0.397116 1.2:-29860336 MS.gene67010:CDS
GGGATGGAAGCTTTGGCAAA+TGG 0.408413 1.2:-29859753 MS.gene67010:CDS
TTAAGGAAGCTACATATTGA+TGG 0.408793 1.2:-29860032 MS.gene67010:CDS
CGATGTAGATGCCGCGGAGC+CGG 0.410875 1.2:+29859545 None:intergenic
ATTTCGATGTTCCGGTGATT+GGG 0.419025 1.2:-29860246 MS.gene67010:CDS
GGTTTCTGTAGCTGTGAATC+TGG 0.425023 1.2:-29859649 MS.gene67010:CDS
ACTTTCCCGGCGGTTGGTTC+CGG 0.430973 1.2:+29861006 None:intergenic
CGCTGCGCTCGAGGAATTGT+CGG 0.432114 1.2:-29860429 MS.gene67010:CDS
CCGCGCGTGTCGCGAACTTA+CGG 0.432226 1.2:-29860558 MS.gene67010:CDS
GATGTAGATGCCGCGGAGCC+GGG 0.436914 1.2:+29859546 None:intergenic
TTACACCTGAAGGTGGGGAT+TGG 0.440333 1.2:-29859686 MS.gene67010:CDS
GCCTGCACTTTCCCGGCGGT+TGG 0.443897 1.2:+29861000 None:intergenic
GTTCACTCGTTTGCCGGCGG+TGG 0.448947 1.2:-29860781 MS.gene67010:CDS
GCAAATCGGATTGGCGATGA+AGG 0.452211 1.2:-29860002 MS.gene67010:CDS
TGGCTAGCACTTTGAGAAGA+TGG 0.454655 1.2:-29859443 MS.gene67010:CDS
TTGCCCGAATCTAGAGAGAT+TGG 0.454730 1.2:-29859883 MS.gene67010:CDS
TTAAACAGAGAAGGAATTAC+CGG 0.456733 1.2:+29860698 None:intergenic
CGGTGACGATGTTGCAGATC+CGG 0.458209 1.2:-29860915 MS.gene67010:CDS
TCGTTACCGTCACCGTCAAC+CGG 0.458796 1.2:+29860896 None:intergenic
CGGCGGTGGCTTCACGTTGA+AGG 0.459312 1.2:-29860767 MS.gene67010:CDS
TGTCGCGAACTTACGGATGC+TGG 0.459477 1.2:-29860551 MS.gene67010:CDS
AGGTAGATCTGATATATAAT+CGG 0.459744 1.2:+29860859 None:intergenic
CGAACTTACGGATGCTGGAA+TGG 0.461081 1.2:-29860546 MS.gene67010:CDS
CAAAGGTTAGGGCTACTGTC+CGG 0.463095 1.2:-29859477 MS.gene67010:CDS
AGCTTAAGGCGCGTGAGATT+AGG 0.464192 1.2:+29860581 None:intergenic
TCCTGTTTCTGATCTTGGGA+TGG 0.465939 1.2:-29859769 MS.gene67010:CDS
GGATGGAAGCTTTGGCAAAT+GGG 0.471037 1.2:-29859752 MS.gene67010:CDS
TCCATCCCAAGATCAGAAAC+AGG 0.475671 1.2:+29859768 None:intergenic
AGTGAAGGTCAAGAAGTGTA+AGG 0.477496 1.2:-29859712 MS.gene67010:CDS
ATTGAATTTCCTGCAATGCC+CGG 0.481428 1.2:-29859564 MS.gene67010:CDS
AAGCCAATCTCTCTAGATTC+GGG 0.481744 1.2:+29859880 None:intergenic
TTGATGGATGGAAGGCAAAT+CGG 0.482279 1.2:-29860016 MS.gene67010:CDS
GATGGTGGAGCACAAGAGAA+TGG 0.489500 1.2:-29859588 MS.gene67010:CDS
CGGTGACCGTGGAAGCTGCT+TGG 0.490935 1.2:+29861026 None:intergenic
GCGGCCACACCCGGTCCAAT+CGG 0.492352 1.2:+29860365 None:intergenic
GGTGGCTGAGCCGATTGGAC+CGG 0.494009 1.2:-29860375 MS.gene67010:CDS
AAAGGTTAGGGCTACTGTCC+GGG 0.502510 1.2:-29859476 MS.gene67010:CDS
CAAGCAGCTTCCACGGTCAC+CGG 0.502543 1.2:-29861025 MS.gene67010:CDS
ACCAACCGCCGGGAAAGTGC+AGG 0.508208 1.2:-29861001 MS.gene67010:CDS
GATCGAGTTCATTCAAGCAA+AGG 0.510836 1.2:-29859494 MS.gene67010:CDS
GCAGCAATGCAAGATATCTC+AGG 0.514016 1.2:+29859831 None:intergenic
ATTGTCGGTGAAGCGGCTTA+GGG 0.516744 1.2:-29860414 MS.gene67010:CDS
CGGCTCCGCGGCATCTACAT+CGG 0.517144 1.2:-29859544 MS.gene67010:CDS
TGAAAATTGCGCTGCGCTCG+AGG 0.520318 1.2:-29860438 MS.gene67010:CDS
AGCACTTTGAGAAGATGGTC+AGG 0.520658 1.2:-29859438 MS.gene67010:CDS
CTCTTGTCTCTAACCATGAC+GGG 0.521217 1.2:+29859401 None:intergenic
GAGAGTGAGTTTGGAAATGT+TGG 0.521536 1.2:-29859913 MS.gene67010:CDS
CGGTCACCGGAACCAACCGC+CGG 0.521564 1.2:-29861012 MS.gene67010:CDS
AACCAACAGATCCACCGCCT+TGG 0.526292 1.2:-29860963 MS.gene67010:CDS
ATGGTGGAGCACAAGAGAAT+GGG 0.527565 1.2:-29859587 MS.gene67010:CDS
CTGAAGGTGGGGATTGGTTG+AGG 0.528050 1.2:-29859680 MS.gene67010:CDS
ACAATCGCTAAACATTCATC+AGG 0.529545 1.2:+29860839 None:intergenic
ACTGCGGTGGCTGAGCCGAT+TGG 0.531430 1.2:-29860380 MS.gene67010:CDS
AACCAAGGCGGTGGATCTGT+TGG 0.533705 1.2:+29860961 None:intergenic
TCCTGCAATGCCCGGCTCCG+CGG 0.534211 1.2:-29859556 MS.gene67010:CDS
GGTGACGGTAACGACGGAAT+CGG 0.538000 1.2:-29860887 MS.gene67010:CDS
GATGGGCCAAGCAGCTTCCA+CGG 0.538513 1.2:-29861032 MS.gene67010:CDS
GGATGGAAGGCAAATCGGAT+TGG 0.542728 1.2:-29860011 MS.gene67010:CDS
GGATTGGTTGAGGCACACTA+GGG 0.546523 1.2:-29859670 MS.gene67010:CDS
TACGCTTATGGCTGAAAGAG+TGG 0.548501 1.2:-29860213 MS.gene67010:CDS
ACACCCGAGTGTACTGATAT+GGG 0.549063 1.2:-29860086 MS.gene67010:CDS
AGTTGTTGAATCCCTCTGAT+CGG 0.551499 1.2:-29860811 MS.gene67010:CDS
GTTCATTCAAGCAAAGGTTA+GGG 0.551510 1.2:-29859488 MS.gene67010:CDS
GTGGCTGAGCCGATTGGACC+GGG 0.559010 1.2:-29860374 MS.gene67010:CDS
CATCGGAGAAACCAAGGCGG+TGG 0.561191 1.2:+29860952 None:intergenic
AACGACGCAGCGGCCACACC+CGG 0.561295 1.2:+29860356 None:intergenic
TCAAATCGATTAAACAGAGA+AGG 0.563215 1.2:+29860689 None:intergenic
TTTCCAAACTCACTCTCGTA+GGG 0.564500 1.2:+29859919 None:intergenic
AAGTCCCATATCAGTACACT+CGG 0.573118 1.2:+29860082 None:intergenic
GGTCACCGGAACCAACCGCC+GGG 0.573207 1.2:-29861011 MS.gene67010:CDS
CTTCAACGTGAAGCCACCGC+CGG 0.574094 1.2:+29860768 None:intergenic
CCGTCGTCGGTGGAGATCAT+CGG 0.576061 1.2:+29860935 None:intergenic
ATTTCCAAACTCACTCTCGT+AGG 0.578841 1.2:+29859918 None:intergenic
CCGTAAGTTCGCGACACGCG+CGG 0.579903 1.2:+29860558 None:intergenic
TGAGCCGATTGGACCGGGTG+TGG 0.583172 1.2:-29860369 MS.gene67010:CDS
AGGGTGTTACACCTGAAGGT+GGG 0.590987 1.2:-29859692 MS.gene67010:CDS
TGCAACATCGTCACCGTCGT+CGG 0.591831 1.2:+29860922 None:intergenic
GCAGATCCGGTTGACGGTGA+CGG 0.594512 1.2:-29860902 MS.gene67010:CDS
TCGAGGAATTGTCGGTGAAG+CGG 0.594693 1.2:-29860421 MS.gene67010:CDS
GGAAGCTACATATTGATGGA+TGG 0.598307 1.2:-29860028 MS.gene67010:CDS
GCTACATATTGATGGATGGA+AGG 0.601245 1.2:-29860024 MS.gene67010:CDS
GCGGTTGGTTCCGGTGACCG+TGG 0.602758 1.2:+29861015 None:intergenic
TGAACACTGATTCCGATCAG+AGG 0.604053 1.2:+29860799 None:intergenic
TAGGGGAATTGCTGAGACTG+CGG 0.604704 1.2:-29860396 MS.gene67010:CDS
GTGAAGGTCAAGAAGTGTAA+GGG 0.606922 1.2:-29859711 MS.gene67010:CDS
GCTCTTGTCTCTAACCATGA+CGG 0.610454 1.2:+29859400 None:intergenic
GAACACTGATTCCGATCAGA+GGG 0.612028 1.2:+29860800 None:intergenic
TGTAAGGGTGTTACACCTGA+AGG 0.612165 1.2:-29859696 MS.gene67010:CDS
GATGCTAGTGCTAGTGATGG+TGG 0.613432 1.2:-29859603 MS.gene67010:CDS
TGTAGCTGTGAATCTGGACG+CGG 0.617383 1.2:-29859643 MS.gene67010:CDS
GGGTGTTACACCTGAAGGTG+GGG 0.621074 1.2:-29859691 MS.gene67010:CDS
TTGAAGGACAGAGTCGTCAA+CGG 0.623455 1.2:-29860751 MS.gene67010:CDS
TTGTCGGTGAAGCGGCTTAG+GGG 0.627341 1.2:-29860413 MS.gene67010:CDS
CAAATCGGATTGGCGATGAA+GGG 0.628264 1.2:-29860001 MS.gene67010:CDS
TGGCGATGAAGGGTTAATTG+CGG 0.631783 1.2:-29859991 MS.gene67010:CDS
TCCCAATTTGGTGAAAGTGA+AGG 0.632374 1.2:-29859727 MS.gene67010:CDS
TTGTGTGCAAGTGATACTGT+TGG 0.633448 1.2:-29859858 MS.gene67010:CDS
AGTGTTCACTCGTTTGCCGG+CGG 0.634069 1.2:-29860784 MS.gene67010:CDS
AAGGGTGTTACACCTGAAGG+TGG 0.641667 1.2:-29859693 MS.gene67010:CDS
GGAGATCATCGGAGAAACCA+AGG 0.642236 1.2:+29860946 None:intergenic
AGTGGCGAGTATGATTGTTG+AGG 0.646663 1.2:-29860195 MS.gene67010:CDS
GATGTTGCAGATCCGGTTGA+CGG 0.647651 1.2:-29860908 MS.gene67010:CDS
AACATCGTCACCGTCGTCGG+TGG 0.649647 1.2:+29860925 None:intergenic
GGGAATTGCTGAGACTGCGG+TGG 0.651918 1.2:-29860393 MS.gene67010:CDS
ATTTGCCGATGTAGATGCCG+CGG 0.660814 1.2:+29859539 None:intergenic
GGTAGCACTAGTGCCCGTCA+TGG 0.661122 1.2:-29859414 None:intergenic
CCGATGATCTCCACCGACGA+CGG 0.668098 1.2:-29860935 MS.gene67010:CDS
CAAGATGCTAGTGCTAGTGA+TGG 0.682263 1.2:-29859606 MS.gene67010:CDS
GGTTTGAGGAAATTATCGTG+TGG 0.686243 1.2:-29860500 MS.gene67010:CDS
ACTGTCCGGGAGGAAAATTG+TGG 0.692257 1.2:-29859463 MS.gene67010:CDS
ACTTTGAGAAGATGGTCAGG+TGG 0.698161 1.2:-29859435 MS.gene67010:CDS
GTTGACGGTGACGGTAACGA+CGG 0.702577 1.2:-29860893 MS.gene67010:CDS
AATCGTCTTCAACGACGCAG+CGG 0.706961 1.2:+29860346 None:intergenic
GGTTGCCTGCACTTTCCCGG+CGG 0.709663 1.2:+29860996 None:intergenic
GGTTAGGGCTACTGTCCGGG+AGG 0.714520 1.2:-29859473 MS.gene67010:CDS
TGGATCTAAAGGTATGAACG+CGG 0.726086 1.2:-29860465 MS.gene67010:CDS
AGTCCCATATCAGTACACTC+GGG 0.741022 1.2:+29860083 None:intergenic
GATCATCGGAGAAACCAAGG+CGG 0.832722 1.2:+29860949 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGGTAGATCTGATATATAAT+CGG + chr1.2:29859590-29859609 None:intergenic 25.0%
! TATTTCGAATTGTTCGAATT+TGG - chr1.2:29860317-29860336 MS.gene67010:CDS 25.0%
! TGTTTGAAGGAACTTTATAA+TGG - chr1.2:29860123-29860142 MS.gene67010:CDS 25.0%
CAGAAAGATGTAAGTTGTTA+AGG - chr1.2:29860397-29860416 MS.gene67010:CDS 30.0%
TCAAATCGATTAAACAGAGA+AGG + chr1.2:29859760-29859779 None:intergenic 30.0%
TTAAACAGAGAAGGAATTAC+CGG + chr1.2:29859751-29859770 None:intergenic 30.0%
TTAAGGAAGCTACATATTGA+TGG - chr1.2:29860414-29860433 MS.gene67010:CDS 30.0%
! AGCTTTTGCTAAGAATTGTA+AGG - chr1.2:29859924-29859943 MS.gene67010:CDS 30.0%
! GCTTTTGCTAAGAATTGTAA+GGG - chr1.2:29859925-29859944 MS.gene67010:CDS 30.0%
! TCTTGTACTTTTGGATCTAA+AGG - chr1.2:29859970-29859989 MS.gene67010:CDS 30.0%
!!! CTTTATAATGGACAGTGTTT+TGG - chr1.2:29860135-29860154 MS.gene67010:CDS 30.0%
!!! TGTTTTGGTTCGTTGATTTT+AGG - chr1.2:29860150-29860169 MS.gene67010:CDS 30.0%
AAAGCCAATCTCTCTAGATT+CGG + chr1.2:29860570-29860589 None:intergenic 35.0%
ACAATCGCTAAACATTCATC+AGG + chr1.2:29859610-29859629 None:intergenic 35.0%
ACCTTCACTTTCACCAAATT+GGG + chr1.2:29860723-29860742 None:intergenic 35.0%
AGCACCAATTCTTGCAAATT+AGG + chr1.2:29860495-29860514 None:intergenic 35.0%
AGGCTTCAGATTAGTGATAT+TGG - chr1.2:29860285-29860304 MS.gene67010:CDS 35.0%
AGTTCATTCAAGCAAAGGTT+AGG - chr1.2:29860957-29860976 MS.gene67010:CDS 35.0%
CTAAGAATTGTAAGGGTTTG+AGG - chr1.2:29859932-29859951 MS.gene67010:CDS 35.0%
GCACCAATTCTTGCAAATTA+GGG + chr1.2:29860494-29860513 None:intergenic 35.0%
GTTCATTCAAGCAAAGGTTA+GGG - chr1.2:29860958-29860977 MS.gene67010:CDS 35.0%
! GTTGAAGACGATTTGTTTGA+AGG - chr1.2:29860110-29860129 MS.gene67010:CDS 35.0%
! TTGAAGCTATTTCGATGTTC+CGG - chr1.2:29860192-29860211 MS.gene67010:CDS 35.0%
! TTGCAAGAATTGGTGCTTAT+TGG - chr1.2:29860498-29860517 MS.gene67010:CDS 35.0%
! TTGCCCTAATTTGCAAGAAT+TGG - chr1.2:29860488-29860507 MS.gene67010:CDS 35.0%
! TTGTTGAGGTTCATTTTGAG+AGG - chr1.2:29860265-29860284 MS.gene67010:CDS 35.0%
!!! ATCTGTTGGTTTTGGTAGAT+CGG + chr1.2:29859474-29859493 None:intergenic 35.0%
AAGCCAATCTCTCTAGATTC+GGG + chr1.2:29860569-29860588 None:intergenic 40.0%
AAGTCCCATATCAGTACACT+CGG + chr1.2:29860367-29860386 None:intergenic 40.0%
AGTTGTTGAATCCCTCTGAT+CGG - chr1.2:29859635-29859654 MS.gene67010:CDS 40.0%
ATTGAATTTCCTGCAATGCC+CGG - chr1.2:29860882-29860901 MS.gene67010:CDS 40.0%
ATTTCCAAACTCACTCTCGT+AGG + chr1.2:29860531-29860550 None:intergenic 40.0%
ATTTCGATGTTCCGGTGATT+GGG - chr1.2:29860200-29860219 MS.gene67010:CDS 40.0%
GACCTTCACTTTCACCAAAT+TGG + chr1.2:29860724-29860743 None:intergenic 40.0%
GAGAGTGAGTTTGGAAATGT+TGG - chr1.2:29860533-29860552 MS.gene67010:CDS 40.0%
GATCGAGTTCATTCAAGCAA+AGG - chr1.2:29860952-29860971 MS.gene67010:CDS 40.0%
GGAAGCTACATATTGATGGA+TGG - chr1.2:29860418-29860437 MS.gene67010:CDS 40.0%
GGTTTGAGGAAATTATCGTG+TGG - chr1.2:29859946-29859965 MS.gene67010:CDS 40.0%
TATTTCGATGTTCCGGTGAT+TGG - chr1.2:29860199-29860218 MS.gene67010:CDS 40.0%
TTGTGTGCAAGTGATACTGT+TGG - chr1.2:29860588-29860607 MS.gene67010:CDS 40.0%
TTTCCAAACTCACTCTCGTA+GGG + chr1.2:29860530-29860549 None:intergenic 40.0%
! AAAAAGCGTATCCCAATCAC+CGG + chr1.2:29860214-29860233 None:intergenic 40.0%
! AGTGAAGGTCAAGAAGTGTA+AGG - chr1.2:29860734-29860753 MS.gene67010:CDS 40.0%
! GCTACATATTGATGGATGGA+AGG - chr1.2:29860422-29860441 MS.gene67010:CDS 40.0%
! GTGAAGGTCAAGAAGTGTAA+GGG - chr1.2:29860735-29860754 MS.gene67010:CDS 40.0%
! TCCCAATTTGGTGAAAGTGA+AGG - chr1.2:29860719-29860738 MS.gene67010:CDS 40.0%
! TCGTGTGGATCTTGTACTTT+TGG - chr1.2:29859961-29859980 MS.gene67010:CDS 40.0%
! TGGATCTAAAGGTATGAACG+CGG - chr1.2:29859981-29860000 MS.gene67010:CDS 40.0%
! TTGATGGATGGAAGGCAAAT+CGG - chr1.2:29860430-29860449 MS.gene67010:CDS 40.0%
! TTGCATTGCTGCAAAGTGTT+TGG - chr1.2:29860626-29860645 MS.gene67010:CDS 40.0%
!! AGTTGTCCTGTTTCTGATCT+TGG - chr1.2:29860672-29860691 MS.gene67010:CDS 40.0%
!! GGATACGCTTTTTACGCTTA+TGG - chr1.2:29860221-29860240 MS.gene67010:CDS 40.0%
!! GTTGTCCTGTTTCTGATCTT+GGG - chr1.2:29860673-29860692 MS.gene67010:CDS 40.0%
AGTCCCATATCAGTACACTC+GGG + chr1.2:29860366-29860385 None:intergenic 45.0%
AGTGGCGAGTATGATTGTTG+AGG - chr1.2:29860251-29860270 MS.gene67010:CDS 45.0%
ATCAGTGTTCACTCGTTTGC+CGG - chr1.2:29859659-29859678 MS.gene67010:CDS 45.0%
CAAGATGCTAGTGCTAGTGA+TGG - chr1.2:29860840-29860859 MS.gene67010:CDS 45.0%
CGCGAAGTTTGATCTTCTTC+CGG - chr1.2:29859729-29859748 MS.gene67010:CDS 45.0%
GCAGCAATGCAAGATATCTC+AGG + chr1.2:29860618-29860637 None:intergenic 45.0%
GGTTTCTGTAGCTGTGAATC+TGG - chr1.2:29860797-29860816 MS.gene67010:CDS 45.0%
TAACCCTACGAGAGTGAGTT+TGG - chr1.2:29860524-29860543 MS.gene67010:CDS 45.0%
TACGCTTATGGCTGAAAGAG+TGG - chr1.2:29860233-29860252 MS.gene67010:CDS 45.0%
TCCATCCCAAGATCAGAAAC+AGG + chr1.2:29860681-29860700 None:intergenic 45.0%
TGATCTTGGGATGGAAGCTT+TGG - chr1.2:29860686-29860705 MS.gene67010:CDS 45.0%
TGGCGATGAAGGGTTAATTG+CGG - chr1.2:29860455-29860474 MS.gene67010:CDS 45.0%
TTGAAGGACAGAGTCGTCAA+CGG - chr1.2:29859695-29859714 MS.gene67010:CDS 45.0%
TTGCCCGAATCTAGAGAGAT+TGG - chr1.2:29860563-29860582 MS.gene67010:CDS 45.0%
! ACACCCGAGTGTACTGATAT+GGG - chr1.2:29860360-29860379 MS.gene67010:CDS 45.0%
! ACTTTGAGAAGATGGTCAGG+TGG - chr1.2:29861011-29861030 MS.gene67010:CDS 45.0%
! AGCACTTTGAGAAGATGGTC+AGG - chr1.2:29861008-29861027 MS.gene67010:CDS 45.0%
! ATGGTGGAGCACAAGAGAAT+GGG - chr1.2:29860859-29860878 MS.gene67010:CDS 45.0%
! GGATGGAAGCTTTGGCAAAT+GGG - chr1.2:29860694-29860713 MS.gene67010:CDS 45.0%
! TGGCTAGCACTTTGAGAAGA+TGG - chr1.2:29861003-29861022 MS.gene67010:CDS 45.0%
!! CAAATCGGATTGGCGATGAA+GGG - chr1.2:29860445-29860464 MS.gene67010:CDS 45.0%
!! GAACACTGATTCCGATCAGA+GGG + chr1.2:29859649-29859668 None:intergenic 45.0%
!! TCCTGTTTCTGATCTTGGGA+TGG - chr1.2:29860677-29860696 MS.gene67010:CDS 45.0%
!! TGAACACTGATTCCGATCAG+AGG + chr1.2:29859650-29859669 None:intergenic 45.0%
!! TGTAAGGGTGTTACACCTGA+AGG - chr1.2:29860750-29860769 MS.gene67010:CDS 45.0%
AAAGGTTAGGGCTACTGTCC+GGG - chr1.2:29860970-29860989 MS.gene67010:CDS 50.0%
AATCGTCTTCAACGACGCAG+CGG + chr1.2:29860103-29860122 None:intergenic 50.0%
AATTGTCGGTGAAGCGGCTT+AGG - chr1.2:29860031-29860050 MS.gene67010:CDS 50.0%
ACTGTCCGGGAGGAAAATTG+TGG - chr1.2:29860983-29861002 MS.gene67010:CDS 50.0%
AGCTTAAGGCGCGTGAGATT+AGG + chr1.2:29859868-29859887 None:intergenic 50.0%
ATTGTCGGTGAAGCGGCTTA+GGG - chr1.2:29860032-29860051 MS.gene67010:CDS 50.0%
ATTTGCCGATGTAGATGCCG+CGG + chr1.2:29860910-29860929 None:intergenic 50.0%
CAAAGGTTAGGGCTACTGTC+CGG - chr1.2:29860969-29860988 MS.gene67010:CDS 50.0%
CGAACTTACGGATGCTGGAA+TGG - chr1.2:29859900-29859919 MS.gene67010:CDS 50.0%
GATCATCGGAGAAACCAAGG+CGG + chr1.2:29859500-29859519 None:intergenic 50.0%
GATGCTAGTGCTAGTGATGG+TGG - chr1.2:29860843-29860862 MS.gene67010:CDS 50.0%
GATGTTGCAGATCCGGTTGA+CGG - chr1.2:29859538-29859557 MS.gene67010:CDS 50.0%
GGAGATCATCGGAGAAACCA+AGG + chr1.2:29859503-29859522 None:intergenic 50.0%
GGATGGAAGGCAAATCGGAT+TGG - chr1.2:29860435-29860454 MS.gene67010:CDS 50.0%
GGCAAATGGGTGTCCCAATT+TGG - chr1.2:29860707-29860726 MS.gene67010:CDS 50.0%
TAGGGGAATTGCTGAGACTG+CGG - chr1.2:29860050-29860069 MS.gene67010:CDS 50.0%
TCGAGGAATTGTCGGTGAAG+CGG - chr1.2:29860025-29860044 MS.gene67010:CDS 50.0%
TGTAGCTGTGAATCTGGACG+CGG - chr1.2:29860803-29860822 MS.gene67010:CDS 50.0%
TTACACCTGAAGGTGGGGAT+TGG - chr1.2:29860760-29860779 MS.gene67010:CDS 50.0%
! AGGGTGTTACACCTGAAGGT+GGG - chr1.2:29860754-29860773 MS.gene67010:CDS 50.0%
! GACACCCGAGTGTACTGATA+TGG - chr1.2:29860359-29860378 MS.gene67010:CDS 50.0%
! GCTAGCCACAATTTTCCTCC+CGG + chr1.2:29860991-29861010 None:intergenic 50.0%
! GGGATGGAAGCTTTGGCAAA+TGG - chr1.2:29860693-29860712 MS.gene67010:CDS 50.0%
!! AAGGGTGTTACACCTGAAGG+TGG - chr1.2:29860753-29860772 MS.gene67010:CDS 50.0%
!! GATGGTGGAGCACAAGAGAA+TGG - chr1.2:29860858-29860877 MS.gene67010:CDS 50.0%
!! GCAAATCGGATTGGCGATGA+AGG - chr1.2:29860444-29860463 MS.gene67010:CDS 50.0%
!! GGATTGGTTGAGGCACACTA+GGG - chr1.2:29860776-29860795 MS.gene67010:CDS 50.0%
AACCAACAGATCCACCGCCT+TGG - chr1.2:29859483-29859502 MS.gene67010:CDS 55.0%
AACCAAGGCGGTGGATCTGT+TGG + chr1.2:29859488-29859507 None:intergenic 55.0%
AGTGTTCACTCGTTTGCCGG+CGG - chr1.2:29859662-29859681 MS.gene67010:CDS 55.0%
ATCGGTTGCCTGCACTTTCC+CGG + chr1.2:29859456-29859475 None:intergenic 55.0%
CGGTGACGATGTTGCAGATC+CGG - chr1.2:29859531-29859550 MS.gene67010:CDS 55.0%
CTCAACCAATCCCCACCTTC+AGG + chr1.2:29860768-29860787 None:intergenic 55.0%
TCGTTACCGTCACCGTCAAC+CGG + chr1.2:29859553-29859572 None:intergenic 55.0%
TGAAAATTGCGCTGCGCTCG+AGG - chr1.2:29860008-29860027 MS.gene67010:CDS 55.0%
TGCAACATCGTCACCGTCGT+CGG + chr1.2:29859527-29859546 None:intergenic 55.0%
TGTCGCGAACTTACGGATGC+TGG - chr1.2:29859895-29859914 MS.gene67010:CDS 55.0%
TTGTCGGTGAAGCGGCTTAG+GGG - chr1.2:29860033-29860052 MS.gene67010:CDS 55.0%
! GGGTGTTACACCTGAAGGTG+GGG - chr1.2:29860755-29860774 MS.gene67010:CDS 55.0%
! GGTGACGGTAACGACGGAAT+CGG - chr1.2:29859559-29859578 MS.gene67010:CDS 55.0%
! GTTGACGGTGACGGTAACGA+CGG - chr1.2:29859553-29859572 MS.gene67010:CDS 55.0%
!! CTGAAGGTGGGGATTGGTTG+AGG - chr1.2:29860766-29860785 MS.gene67010:CDS 55.0%
!! GGGATTGGTTGAGGCACACT+AGG - chr1.2:29860775-29860794 MS.gene67010:CDS 55.0%
!!! GGCGGTGGATCTGTTGGTTT+TGG + chr1.2:29859482-29859501 None:intergenic 55.0%
AACATCGTCACCGTCGTCGG+TGG + chr1.2:29859524-29859543 None:intergenic 60.0%
CAAGCAGCTTCCACGGTCAC+CGG - chr1.2:29859421-29859440 MS.gene67010:CDS 60.0%
CATCGGAGAAACCAAGGCGG+TGG + chr1.2:29859497-29859516 None:intergenic 60.0%
CCGATGATCTCCACCGACGA+CGG - chr1.2:29859511-29859530 MS.gene67010:CDS 60.0%
CCGTCGTCGGTGGAGATCAT+CGG + chr1.2:29859514-29859533 None:intergenic 60.0%
CGCTGCGCTCGAGGAATTGT+CGG - chr1.2:29860017-29860036 MS.gene67010:CDS 60.0%
CTTCAACGTGAAGCCACCGC+CGG + chr1.2:29859681-29859700 None:intergenic 60.0%
GCAGATCCGGTTGACGGTGA+CGG - chr1.2:29859544-29859563 MS.gene67010:CDS 60.0%
GGGAATTGCTGAGACTGCGG+TGG - chr1.2:29860053-29860072 MS.gene67010:CDS 60.0%
! ACTTTCCCGGCGGTTGGTTC+CGG + chr1.2:29859443-29859462 None:intergenic 60.0%
ACTGCGGTGGCTGAGCCGAT+TGG - chr1.2:29860066-29860085 MS.gene67010:CDS 65.0%
CCGCGCGTGTCGCGAACTTA+CGG - chr1.2:29859888-29859907 MS.gene67010:CDS 65.0%
CCGTAAGTTCGCGACACGCG+CGG + chr1.2:29859891-29859910 None:intergenic 65.0%
CGATGTAGATGCCGCGGAGC+CGG + chr1.2:29860904-29860923 None:intergenic 65.0%
CGGCGGTGGCTTCACGTTGA+AGG - chr1.2:29859679-29859698 MS.gene67010:CDS 65.0%
CGGCTCCGCGGCATCTACAT+CGG - chr1.2:29860902-29860921 MS.gene67010:CDS 65.0%
CGGTGACCGTGGAAGCTGCT+TGG + chr1.2:29859423-29859442 None:intergenic 65.0%
GATGTAGATGCCGCGGAGCC+GGG + chr1.2:29860903-29860922 None:intergenic 65.0%
GGTGGCTGAGCCGATTGGAC+CGG - chr1.2:29860071-29860090 MS.gene67010:CDS 65.0%
GGTTAGGGCTACTGTCCGGG+AGG - chr1.2:29860973-29860992 MS.gene67010:CDS 65.0%
GGTTGCCTGCACTTTCCCGG+CGG + chr1.2:29859453-29859472 None:intergenic 65.0%
GTGGCTGAGCCGATTGGACC+GGG - chr1.2:29860072-29860091 MS.gene67010:CDS 65.0%
GTTCACTCGTTTGCCGGCGG+TGG - chr1.2:29859665-29859684 MS.gene67010:CDS 65.0%
TGAGCCGATTGGACCGGGTG+TGG - chr1.2:29860077-29860096 MS.gene67010:CDS 65.0%
! ACCAACCGCCGGGAAAGTGC+AGG - chr1.2:29859445-29859464 MS.gene67010:CDS 65.0%
AACGACGCAGCGGCCACACC+CGG + chr1.2:29860093-29860112 None:intergenic 70.0%
CGCGACACGCGCGGAGCTTA+AGG + chr1.2:29859882-29859901 None:intergenic 70.0%
CGGTCACCGGAACCAACCGC+CGG - chr1.2:29859434-29859453 MS.gene67010:CDS 70.0%
GCCTGCACTTTCCCGGCGGT+TGG + chr1.2:29859449-29859468 None:intergenic 70.0%
GCGGCCACACCCGGTCCAAT+CGG + chr1.2:29860084-29860103 None:intergenic 70.0%
GGTCACCGGAACCAACCGCC+GGG - chr1.2:29859435-29859454 MS.gene67010:CDS 70.0%
TCCTGCAATGCCCGGCTCCG+CGG - chr1.2:29860890-29860909 MS.gene67010:CDS 70.0%
! GCGGTTGGTTCCGGTGACCG+TGG + chr1.2:29859434-29859453 None:intergenic 70.0%
!! GCCGCGGAGCCGGGCATTGC+AGG + chr1.2:29860894-29860913 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 29859415 29861053 29859415 ID=MS.gene67010
chr1.2 mRNA 29859415 29861053 29859415 ID=MS.gene67010.t1;Parent=MS.gene67010
chr1.2 exon 29859415 29861053 29859415 ID=MS.gene67010.t1.exon1;Parent=MS.gene67010.t1
chr1.2 CDS 29859415 29861053 29859415 ID=cds.MS.gene67010.t1;Parent=MS.gene67010.t1
Gene Sequence

>MS.gene67010

ATGGGCCAAGCAGCTTCCACGGTCACCGGAACCAACCGCCGGGAAAGTGCAGGCAACCGATCTACCAAAACCAACAGATCCACCGCCTTGGTTTCTCCGATGATCTCCACCGACGACGGTGACGATGTTGCAGATCCGGTTGACGGTGACGGTAACGACGGAATCGGAAACTCCGATTATATATCAGATCTACCTGATGAATGTTTAGCGATTGTGTTTCAGTTGTTGAATCCCTCTGATCGGAATCAGTGTTCACTCGTTTGCCGGCGGTGGCTTCACGTTGAAGGACAGAGTCGTCAACGGCTTTCGTTGAACGCGAAGTTTGATCTTCTTCCGGTAATTCCTTCTCTGTTTAATCGATTTGATTCAGTGACGAAATTAGCGTTGAAGTGTGATCGTAGATCTGCGAGTATTAGAGATGAAGCGCTTGTGATAATCTCTGAGCGTTGTCCTAATCTCACGCGCCTTAAGCTCCGCGCGTGTCGCGAACTTACGGATGCTGGAATGGAAGCTTTTGCTAAGAATTGTAAGGGTTTGAGGAAATTATCGTGTGGATCTTGTACTTTTGGATCTAAAGGTATGAACGCGGTGCTTGAAAATTGCGCTGCGCTCGAGGAATTGTCGGTGAAGCGGCTTAGGGGAATTGCTGAGACTGCGGTGGCTGAGCCGATTGGACCGGGTGTGGCCGCTGCGTCGTTGAAGACGATTTGTTTGAAGGAACTTTATAATGGACAGTGTTTTGGTTCGTTGATTTTAGGTGCTAAGAATTTGAAGACTTTGAAGCTATTTCGATGTTCCGGTGATTGGGATACGCTTTTTACGCTTATGGCTGAAAGAGTGGCGAGTATGATTGTTGAGGTTCATTTTGAGAGGCTTCAGATTAGTGATATTGGATTGCAAGCTATTTCGAATTGTTCGAATTTGGAGATTTTGCATCTTGTTAAGACACCCGAGTGTACTGATATGGGACTTGTTGCGATAGCAGAAAGATGTAAGTTGTTAAGGAAGCTACATATTGATGGATGGAAGGCAAATCGGATTGGCGATGAAGGGTTAATTGCGGTTGCAAAGTTTTGCCCTAATTTGCAAGAATTGGTGCTTATTGGTGTTAACCCTACGAGAGTGAGTTTGGAAATGTTGGCATCGAATTGCCCGAATCTAGAGAGATTGGCTTTGTGTGCAAGTGATACTGTTGGTGATCCTGAGATATCTTGCATTGCTGCAAAGTGTTTGGCTTTGAAGAAACTTTGCATCAAGAGTTGTCCTGTTTCTGATCTTGGGATGGAAGCTTTGGCAAATGGGTGTCCCAATTTGGTGAAAGTGAAGGTCAAGAAGTGTAAGGGTGTTACACCTGAAGGTGGGGATTGGTTGAGGCACACTAGGGTTTCTGTAGCTGTGAATCTGGACGCGGTTGAAGCAGAACTTCAAGATGCTAGTGCTAGTGATGGTGGAGCACAAGAGAATGGGATTGAATTTCCTGCAATGCCCGGCTCCGCGGCATCTACATCGGCAAATATTGCATCGAGAAGTACTGTTCGATCGAGTTCATTCAAGCAAAGGTTAGGGCTACTGTCCGGGAGGAAAATTGTGGCTAGCACTTTGAGAAGATGGTCAGGTGGTAGCACTAGTGCCCGTCATG

Protein sequence

>MS.gene67010.t1

MGQAASTVTGTNRRESAGNRSTKTNRSTALVSPMISTDDGDDVADPVDGDGNDGIGNSDYISDLPDECLAIVFQLLNPSDRNQCSLVCRRWLHVEGQSRQRLSLNAKFDLLPVIPSLFNRFDSVTKLALKCDRRSASIRDEALVIISERCPNLTRLKLRACRELTDAGMEAFAKNCKGLRKLSCGSCTFGSKGMNAVLENCAALEELSVKRLRGIAETAVAEPIGPGVAAASLKTICLKELYNGQCFGSLILGAKNLKTLKLFRCSGDWDTLFTLMAERVASMIVEVHFERLQISDIGLQAISNCSNLEILHLVKTPECTDMGLVAIAERCKLLRKLHIDGWKANRIGDEGLIAVAKFCPNLQELVLIGVNPTRVSLEMLASNCPNLERLALCASDTVGDPEISCIAAKCLALKKLCIKSCPVSDLGMEALANGCPNLVKVKVKKCKGVTPEGGDWLRHTRVSVAVNLDAVEAELQDASASDGGAQENGIEFPAMPGSAASTSANIASRSTVRSSSFKQRLGLLSGRKIVASTLRRWSGGSTSARH