Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88672.t1 | XP_003610136.1 | 97.3 | 258 | 7 | 0 | 1 | 258 | 1 | 258 | 9.10E-138 | 500.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88672.t1 | Q10S27 | 57.8 | 258 | 107 | 1 | 1 | 258 | 1 | 256 | 3.2e-83 | 310.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88672.t1 | G7JVH4 | 97.3 | 258 | 7 | 0 | 1 | 258 | 1 | 258 | 6.6e-138 | 500.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene88672 | -0.831009 | 2.13E-55 | -1.69E-46 |
| MS.gene049151 | MS.gene88672 | -0.812352 | 4.43E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene88672 | -0.824625 | 7.29E-54 | -1.69E-46 |
| MS.gene049195 | MS.gene88672 | -0.818296 | 2.11E-52 | -1.69E-46 |
| MS.gene049260 | MS.gene88672 | -0.822876 | 1.87E-53 | -1.69E-46 |
| MS.gene049297 | MS.gene88672 | -0.838089 | 3.54E-57 | -1.69E-46 |
| MS.gene04933 | MS.gene88672 | -0.860234 | 2.38E-63 | -1.69E-46 |
| MS.gene049378 | MS.gene88672 | -0.850701 | 1.43E-60 | -1.69E-46 |
| MS.gene049599 | MS.gene88672 | 0.831731 | 1.41E-55 | -1.69E-46 |
| MS.gene049758 | MS.gene88672 | -0.82753 | 1.49E-54 | -1.69E-46 |
| MS.gene049910 | MS.gene88672 | -0.801948 | 7.08E-49 | -1.69E-46 |
| MS.gene050168 | MS.gene88672 | -0.826586 | 2.50E-54 | -1.69E-46 |
| MS.gene050226 | MS.gene88672 | -0.849918 | 2.37E-60 | -1.69E-46 |
| MS.gene050227 | MS.gene88672 | -0.866009 | 3.90E-65 | -1.69E-46 |
| MS.gene050228 | MS.gene88672 | -0.856397 | 3.31E-62 | -1.69E-46 |
| MS.gene050301 | MS.gene88672 | -0.810979 | 8.80E-51 | -1.69E-46 |
| MS.gene050330 | MS.gene88672 | 0.894 | 3.72E-75 | -1.69E-46 |
| MS.gene050442 | MS.gene88672 | -0.826502 | 2.62E-54 | -1.69E-46 |
| MS.gene050558 | MS.gene88672 | -0.842851 | 2.01E-58 | -1.69E-46 |
| MS.gene050623 | MS.gene88672 | 0.840969 | 6.31E-58 | -1.69E-46 |
| MS.gene050642 | MS.gene88672 | -0.851383 | 9.20E-61 | -1.69E-46 |
| MS.gene050680 | MS.gene88672 | -0.808614 | 2.84E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene88672 | -0.815434 | 9.26E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene88672 | -0.81532 | 9.82E-52 | -1.69E-46 |
| MS.gene050724 | MS.gene88672 | -0.802498 | 5.45E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene88672 | -0.824614 | 7.34E-54 | -1.69E-46 |
| MS.gene050820 | MS.gene88672 | -0.831186 | 1.93E-55 | -1.69E-46 |
| MS.gene05119 | MS.gene88672 | 0.852641 | 4.04E-61 | -1.69E-46 |
| MS.gene051860 | MS.gene88672 | -0.850488 | 1.64E-60 | -1.69E-46 |
| MS.gene051983 | MS.gene88672 | -0.866762 | 2.25E-65 | -1.69E-46 |
| MS.gene052011 | MS.gene88672 | 0.835291 | 1.83E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene88672 | -0.842877 | 1.98E-58 | -1.69E-46 |
| MS.gene052176 | MS.gene88672 | -0.881864 | 1.68E-70 | -1.69E-46 |
| MS.gene052253 | MS.gene88672 | -0.804907 | 1.72E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene88672 | 0.8509 | 1.26E-60 | -1.69E-46 |
| MS.gene052358 | MS.gene88672 | 0.837438 | 5.20E-57 | -1.69E-46 |
| MS.gene052361 | MS.gene88672 | 0.825938 | 3.57E-54 | -1.69E-46 |
| MS.gene052389 | MS.gene88672 | -0.83288 | 7.34E-56 | -1.69E-46 |
| MS.gene052600 | MS.gene88672 | -0.807534 | 4.82E-50 | -1.69E-46 |
| MS.gene053054 | MS.gene88672 | 0.806081 | 9.78E-50 | -1.69E-46 |
| MS.gene053176 | MS.gene88672 | -0.801168 | 1.02E-48 | -1.69E-46 |
| MS.gene053811 | MS.gene88672 | -0.819374 | 1.20E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene88672 | -0.867667 | 1.16E-65 | -1.69E-46 |
| MS.gene054183 | MS.gene88672 | -0.835196 | 1.93E-56 | -1.69E-46 |
| MS.gene054291 | MS.gene88672 | 0.809284 | 2.04E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene88672 | -0.807572 | 4.73E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene88672 | -0.837748 | 4.33E-57 | -1.69E-46 |
| MS.gene054473 | MS.gene88672 | -0.832516 | 9.04E-56 | -1.69E-46 |
| MS.gene054542 | MS.gene88672 | -0.835312 | 1.81E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene88672 | -0.856753 | 2.60E-62 | -1.69E-46 |
| MS.gene054942 | MS.gene88672 | -0.847647 | 1.01E-59 | -1.69E-46 |
| MS.gene054983 | MS.gene88672 | -0.841563 | 4.40E-58 | -1.69E-46 |
| MS.gene055217 | MS.gene88672 | -0.802026 | 6.82E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene88672 | -0.827482 | 1.53E-54 | -1.69E-46 |
| MS.gene055358 | MS.gene88672 | -0.860391 | 2.13E-63 | -1.69E-46 |
| MS.gene055367 | MS.gene88672 | -0.805161 | 1.53E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene88672 | -0.802114 | 6.54E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene88672 | -0.814592 | 1.42E-51 | -1.69E-46 |
| MS.gene055604 | MS.gene88672 | -0.856669 | 2.75E-62 | -1.69E-46 |
| MS.gene055701 | MS.gene88672 | -0.833264 | 5.89E-56 | -1.69E-46 |
| MS.gene056069 | MS.gene88672 | 0.849054 | 4.14E-60 | -1.69E-46 |
| MS.gene056087 | MS.gene88672 | -0.814141 | 1.79E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene88672 | -0.818811 | 1.61E-52 | -1.69E-46 |
| MS.gene056612 | MS.gene88672 | -0.808117 | 3.63E-50 | -1.69E-46 |
| MS.gene056723 | MS.gene88672 | -0.804586 | 2.01E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene88672 | -0.85431 | 1.34E-61 | -1.69E-46 |
| MS.gene057026 | MS.gene88672 | -0.80552 | 1.28E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene88672 | -0.803616 | 3.20E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene88672 | -0.80598 | 1.03E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene88672 | -0.836946 | 6.95E-57 | -1.69E-46 |
| MS.gene057469 | MS.gene88672 | -0.836763 | 7.73E-57 | -1.69E-46 |
| MS.gene05761 | MS.gene88672 | -0.802136 | 6.47E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene88672 | -0.806402 | 8.37E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene88672 | -0.828272 | 9.86E-55 | -1.69E-46 |
| MS.gene058139 | MS.gene88672 | -0.843091 | 1.73E-58 | -1.69E-46 |
| MS.gene058142 | MS.gene88672 | -0.858529 | 7.74E-63 | -1.69E-46 |
| MS.gene058378 | MS.gene88672 | -0.815998 | 6.93E-52 | -1.69E-46 |
| MS.gene058710 | MS.gene88672 | -0.847246 | 1.31E-59 | -1.69E-46 |
| MS.gene058749 | MS.gene88672 | -0.818714 | 1.70E-52 | -1.69E-46 |
| MS.gene05886 | MS.gene88672 | -0.8026 | 5.19E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene88672 | -0.80248 | 5.50E-49 | -1.69E-46 |
| MS.gene059161 | MS.gene88672 | -0.805561 | 1.26E-49 | -1.69E-46 |
| MS.gene059247 | MS.gene88672 | -0.821503 | 3.90E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene88672 | -0.801052 | 1.08E-48 | -1.69E-46 |
| MS.gene059609 | MS.gene88672 | -0.808181 | 3.51E-50 | -1.69E-46 |
| MS.gene059789 | MS.gene88672 | -0.803089 | 4.12E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene88672 | -0.831705 | 1.44E-55 | -1.69E-46 |
| MS.gene060137 | MS.gene88672 | 0.819585 | 1.07E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene88672 | -0.826895 | 2.11E-54 | -1.69E-46 |
| MS.gene060685 | MS.gene88672 | -0.817774 | 2.77E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene88672 | -0.800505 | 1.40E-48 | -1.69E-46 |
| MS.gene061040 | MS.gene88672 | 0.851916 | 6.50E-61 | -1.69E-46 |
| MS.gene061049 | MS.gene88672 | -0.837637 | 4.62E-57 | -1.69E-46 |
| MS.gene061114 | MS.gene88672 | 0.862833 | 3.83E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88672.t1 | MTR_4g128290 | 99.640 | 278 | 1 | 0 | 322 | 599 | 4 | 281 | 0.0 | 550 |
| MS.gene88672.t1 | MTR_4g128300 | 97.287 | 258 | 7 | 0 | 1 | 258 | 1 | 258 | 0.0 | 513 |
| MS.gene88672.t1 | MTR_6g011390 | 43.525 | 278 | 146 | 3 | 1 | 276 | 1 | 269 | 5.61e-69 | 225 |
| MS.gene88672.t1 | MTR_7g009330 | 40.493 | 284 | 159 | 3 | 2 | 284 | 3 | 277 | 2.14e-66 | 218 |
| MS.gene88672.t1 | MTR_8g469150 | 40.214 | 281 | 159 | 2 | 1 | 281 | 1 | 272 | 5.89e-66 | 217 |
| MS.gene88672.t1 | MTR_8g469150 | 40.580 | 276 | 155 | 2 | 1 | 276 | 1 | 267 | 1.52e-65 | 216 |
| MS.gene88672.t1 | MTR_5g015580 | 41.288 | 264 | 153 | 1 | 1 | 264 | 1 | 262 | 2.28e-64 | 213 |
| MS.gene88672.t1 | MTR_1g018205 | 39.453 | 256 | 153 | 1 | 2 | 257 | 3 | 256 | 7.29e-57 | 193 |
| MS.gene88672.t1 | MTR_4g107840 | 25.185 | 270 | 143 | 6 | 1 | 258 | 1 | 223 | 1.31e-17 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88672.t1 | AT2G18840 | 80.496 | 282 | 45 | 4 | 323 | 599 | 5 | 281 | 6.59e-128 | 377 |
| MS.gene88672.t1 | AT4G30260 | 78.723 | 282 | 51 | 3 | 322 | 599 | 4 | 280 | 1.78e-118 | 353 |
| MS.gene88672.t1 | AT4G30260 | 78.723 | 282 | 51 | 3 | 322 | 599 | 4 | 280 | 1.78e-118 | 353 |
| MS.gene88672.t1 | AT4G30260 | 78.723 | 282 | 51 | 3 | 322 | 599 | 79 | 355 | 1.91e-117 | 353 |
| MS.gene88672.t1 | AT5G57490 | 56.589 | 258 | 108 | 2 | 1 | 258 | 1 | 254 | 1.36e-95 | 294 |
| MS.gene88672.t1 | AT5G67500 | 43.023 | 258 | 145 | 2 | 1 | 258 | 1 | 256 | 2.03e-65 | 216 |
| MS.gene88672.t1 | AT5G15090 | 42.248 | 258 | 145 | 3 | 1 | 258 | 1 | 254 | 2.68e-65 | 215 |
| MS.gene88672.t1 | AT5G15090 | 42.248 | 258 | 145 | 3 | 1 | 258 | 1 | 254 | 2.68e-65 | 215 |
| MS.gene88672.t1 | AT5G67500 | 43.023 | 258 | 145 | 2 | 1 | 258 | 1 | 256 | 6.35e-65 | 215 |
| MS.gene88672.t1 | AT3G01280 | 40.217 | 276 | 156 | 2 | 1 | 276 | 1 | 267 | 2.95e-62 | 207 |
| MS.gene88672.t1 | AT5G67500 | 39.298 | 285 | 144 | 3 | 1 | 258 | 1 | 283 | 2.37e-60 | 203 |
| MS.gene88672.t1 | AT3G49920 | 29.845 | 258 | 129 | 3 | 1 | 258 | 1 | 206 | 4.75e-30 | 118 |
| MS.gene88672.t1 | AT3G49920 | 43.011 | 93 | 51 | 1 | 1 | 93 | 1 | 91 | 3.39e-16 | 75.9 |
| MS.gene88672.t1 | AT3G49920 | 43.011 | 93 | 51 | 1 | 1 | 93 | 1 | 91 | 3.39e-16 | 75.9 |
| MS.gene88672.t1 | AT3G49920 | 45.679 | 81 | 44 | 0 | 1 | 81 | 1 | 81 | 3.51e-15 | 72.0 |
Find 153 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGCGTGATTGGGATCTT+TGG | 0.212274 | 8.1:+4504839 | MS.gene88672:CDS |
| TCTTAGGTCTCACTCTTTCT+TGG | 0.230737 | 8.1:+4504884 | MS.gene88672:CDS |
| GATAGGGTTATGAGTGAATT+TGG | 0.233277 | 8.1:-4502209 | None:intergenic |
| CAGACTACAAGCATGTTTCT+TGG | 0.237224 | 8.1:+4502899 | MS.gene88672:CDS |
| GAGGGGTGAGAAGAGGATTT+GGG | 0.249482 | 8.1:-4504607 | None:intergenic |
| AGAGGGGTGAGAAGAGGATT+TGG | 0.272320 | 8.1:-4504608 | None:intergenic |
| TTTGCGTGATTGGGATCTTT+GGG | 0.284611 | 8.1:+4504840 | MS.gene88672:CDS |
| GACATTGAATGTCCTGCTTC+TGG | 0.295731 | 8.1:+4507484 | MS.gene88672:CDS |
| TGGAAACAAAGATATATCTA+TGG | 0.307586 | 8.1:+4500570 | MS.gene88672:CDS |
| CTGGTAAGGCTTTGCGTGAT+TGG | 0.311351 | 8.1:+4504830 | MS.gene88672:CDS |
| TTACCAGGATCTTCACGATT+AGG | 0.314504 | 8.1:-4504814 | None:intergenic |
| TACCTTGACTGAACCTGTTT+GGG | 0.319249 | 8.1:+4504729 | MS.gene88672:CDS |
| GAAGAAGGAGGAGGAGGAAG+AGG | 0.324483 | 8.1:-4504661 | None:intergenic |
| TGACATTGGCGTGGAGCTCT+TGG | 0.332939 | 8.1:+4507836 | MS.gene88672:CDS |
| TACCAGGATCTTCACGATTA+GGG | 0.334276 | 8.1:-4504813 | None:intergenic |
| TTGGAGCTTTCTGCTGCAAT+TGG | 0.346421 | 8.1:+4500550 | MS.gene88672:CDS |
| GCAGCAACTGTTAATCCATC+TGG | 0.352067 | 8.1:-4502047 | None:intergenic |
| TTGGTCTGCTTCTGTCAAAA+AGG | 0.353322 | 8.1:+4504903 | MS.gene88672:CDS |
| ATACCTTGACTGAACCTGTT+TGG | 0.358956 | 8.1:+4504728 | MS.gene88672:CDS |
| GCATTTGCCTTACTTGCTGC+TGG | 0.365044 | 8.1:+4507449 | MS.gene88672:CDS |
| CTGAGAACAGATTTACCTTT+GGG | 0.368712 | 8.1:+4502096 | MS.gene88672:CDS |
| AATCCGGAGGTGGAGATATC+AGG | 0.373882 | 8.1:-4504691 | None:intergenic |
| GCAGCTATTGATTCAAGTAT+TGG | 0.376139 | 8.1:+4500508 | MS.gene88672:CDS |
| GAAGGAGGAGGAGGAAGAGG+AGG | 0.377972 | 8.1:-4504658 | None:intergenic |
| TGGAGTCATACTCGGCAGAT+AGG | 0.385640 | 8.1:-4502226 | None:intergenic |
| AGGGGTGAGAAGAGGATTTG+GGG | 0.387373 | 8.1:-4504606 | None:intergenic |
| TGTTTATGCAGGGCTGATAA+AGG | 0.390368 | 8.1:+4501984 | MS.gene88672:intron |
| ATAAGTGTTGCAGAGAAATC+TGG | 0.396923 | 8.1:-4500664 | None:intergenic |
| TGGTAAGGCTTTGCGTGATT+GGG | 0.399572 | 8.1:+4504831 | MS.gene88672:CDS |
| GATATCTCCACCTCCGGATT+CGG | 0.401652 | 8.1:+4504694 | MS.gene88672:CDS |
| CTTGAACCCAGCCCCTCAAT+TGG | 0.403062 | 8.1:+4500531 | MS.gene88672:CDS |
| GCCTCCACGCTCGTTGGCAT+TGG | 0.411252 | 8.1:-4502187 | None:intergenic |
| CGGGTAGAAGAAGGAGGAGG+AGG | 0.413219 | 8.1:-4504667 | None:intergenic |
| TCTTTAACCCTGTGGCTGTA+AGG | 0.413704 | 8.1:-4499366 | None:intergenic |
| TGCTTATTCCCTCTTGATGT+TGG | 0.413824 | 8.1:+4507757 | MS.gene88672:CDS |
| TCTGAGAACAGATTTACCTT+TGG | 0.415880 | 8.1:+4502095 | MS.gene88672:CDS |
| CGATCTCGTCGATGTCAGAT+TGG | 0.423884 | 8.1:-4504453 | None:intergenic |
| GAAAGCTCCAATTGAGGGGC+TGG | 0.425247 | 8.1:-4500538 | None:intergenic |
| ACAGGTTCAGTCAAGGTATT+GGG | 0.426001 | 8.1:-4504724 | None:intergenic |
| AGAGAAATCTGGTTTATTGA+AGG | 0.430478 | 8.1:-4500653 | None:intergenic |
| CAAGAAACATGCTTGTAGTC+TGG | 0.432639 | 8.1:-4502898 | None:intergenic |
| AACCGAGCAGACTCAGACTC+TGG | 0.433237 | 8.1:-4507732 | None:intergenic |
| TGGTTTATTGAAGGCAATCC+CGG | 0.439965 | 8.1:-4500644 | None:intergenic |
| GATCTCGTCGATGTCAGATT+GGG | 0.440020 | 8.1:-4504452 | None:intergenic |
| GACATTGGCGTGGAGCTCTT+GGG | 0.445245 | 8.1:+4507837 | MS.gene88672:CDS |
| ACCTTTCCTGACTTGTGATC+GGG | 0.446241 | 8.1:-4499811 | None:intergenic |
| AGAGGAGGGAGAGAAGAAGA+AGG | 0.446255 | 8.1:-4504643 | None:intergenic |
| GGATCTTCACGATTAGGGTT+AGG | 0.446271 | 8.1:-4504808 | None:intergenic |
| AACAGGTTCAGTCAAGGTAT+TGG | 0.450830 | 8.1:-4504725 | None:intergenic |
| GAACAATGTTATAGTAAAAG+TGG | 0.451640 | 8.1:+4507801 | MS.gene88672:CDS |
| TTTCAAATTACTAACAATCC+TGG | 0.451701 | 8.1:-4504773 | None:intergenic |
| CACCTTTCCTGACTTGTGAT+CGG | 0.452824 | 8.1:-4499812 | None:intergenic |
| GAAGAAGTGGAAGAAGTGAC+GGG | 0.456726 | 8.1:-4504547 | None:intergenic |
| ATTACCAATCCAGTGGAACT+TGG | 0.458092 | 8.1:-4497237 | None:intergenic |
| AAGGAGGAGGAGGAAGAGGA+GGG | 0.458852 | 8.1:-4504657 | None:intergenic |
| AAGACTCGATTCAGCGATGA+TGG | 0.459917 | 8.1:+4502152 | MS.gene88672:CDS |
| ATATCTATGGGTGCTGAAGT+TGG | 0.460121 | 8.1:+4500583 | MS.gene88672:CDS |
| GGATGATGCGTGAAGGGGTA+TGG | 0.460845 | 8.1:-4504431 | None:intergenic |
| GGCATCTTACATTCATTATG+TGG | 0.465201 | 8.1:+4502019 | MS.gene88672:CDS |
| GAGGAGGGAGAGAAGAAGAA+GGG | 0.465284 | 8.1:-4504642 | None:intergenic |
| AGAAGAAGTGGAAGAAGTGA+CGG | 0.467329 | 8.1:-4504548 | None:intergenic |
| TACAGCACCAGCAGCAAGTA+AGG | 0.473133 | 8.1:-4507456 | None:intergenic |
| ATTGAAGCGCGTGGAGGAGA+TGG | 0.474354 | 8.1:-4504523 | None:intergenic |
| GATTCCAAGTTCCACTGGAT+TGG | 0.477100 | 8.1:+4497233 | MS.gene88672:CDS |
| TTTCTCATGTATGTATCTGT+TGG | 0.477366 | 8.1:+4507925 | MS.gene88672:CDS |
| TGGGAGAGAGGGGTGAGAAG+AGG | 0.477680 | 8.1:-4504614 | None:intergenic |
| ACATTGATGCATTTAGTCAA+TGG | 0.480573 | 8.1:-4507962 | None:intergenic |
| GGAGGAGATGGTGGACGAGC+AGG | 0.480676 | 8.1:-4504511 | None:intergenic |
| ATTGGGAGCAGGTCCGAATC+CGG | 0.481172 | 8.1:-4504707 | None:intergenic |
| AAATCTCATTTACGCTTCTC+CGG | 0.482794 | 8.1:+4504477 | MS.gene88672:CDS |
| AATATACCCGATCACAAGTC+AGG | 0.484667 | 8.1:+4499805 | MS.gene88672:CDS |
| CTGTCAAAAGAGATCTCTCC+AGG | 0.485149 | 8.1:+4504755 | MS.gene88672:CDS |
| CATTCTCAAAATATAATGCC+GGG | 0.487500 | 8.1:+4500626 | MS.gene88672:CDS |
| CAAGCATGTTTCTTGGACAC+CGG | 0.487657 | 8.1:+4502906 | MS.gene88672:CDS |
| ATTAATGCACCAACATCAAG+AGG | 0.490162 | 8.1:-4507766 | None:intergenic |
| GCCTGCAGACCTCTTGTACA+AGG | 0.492635 | 8.1:+4497179 | MS.gene88672:intron |
| CAATCACGCAAAGCCTTACC+AGG | 0.493751 | 8.1:-4504829 | None:intergenic |
| TTCCAGAGTCTGAGTCTGCT+CGG | 0.495796 | 8.1:+4507730 | MS.gene88672:CDS |
| TTCTCATTCATTATGGCTAA+CGG | 0.496771 | 8.1:+4496530 | None:intergenic |
| CAGCAGAAAGCTCCAATTGA+GGG | 0.498390 | 8.1:-4500543 | None:intergenic |
| GGGTGCAGGATTAGGAAGAT+TGG | 0.498637 | 8.1:-4504584 | None:intergenic |
| ATTGATGAAAGGAGAAGAAG+TGG | 0.504994 | 8.1:-4504560 | None:intergenic |
| CGAGCAGGAAGAACGGTGGC+CGG | 0.505096 | 8.1:-4504496 | None:intergenic |
| AACCCTAATCGTGAAGATCC+TGG | 0.505934 | 8.1:+4504811 | MS.gene88672:CDS |
| CGACCTGATATCTCCACCTC+CGG | 0.510188 | 8.1:+4504688 | MS.gene88672:CDS |
| GGAGTCATACTCGGCAGATA+GGG | 0.510982 | 8.1:-4502225 | None:intergenic |
| AGCAGGTCCGAATCCGGAGG+TGG | 0.512160 | 8.1:-4504701 | None:intergenic |
| TCATTCTCAAAATATAATGC+CGG | 0.512651 | 8.1:+4500625 | MS.gene88672:CDS |
| TTACAGGGCCTTACAGCCAC+AGG | 0.513580 | 8.1:+4499358 | MS.gene88672:intron |
| CCACGCTCGTTGGCATTGGA+AGG | 0.521657 | 8.1:-4502183 | None:intergenic |
| CCTTCCAATGCCAACGAGCG+TGG | 0.522608 | 8.1:+4502183 | MS.gene88672:CDS |
| TGTTATAGTAAAAGTGGTAG+TGG | 0.523207 | 8.1:+4507807 | MS.gene88672:CDS |
| AAGAAAACAATGAAGAAGAA+AGG | 0.524288 | 8.1:-4504865 | None:intergenic |
| CCAATCTCAGAAAACGGTGC+TGG | 0.527039 | 8.1:-4496554 | None:intergenic |
| AGGAGGGAGAGAAGAAGAAG+GGG | 0.529098 | 8.1:-4504641 | None:intergenic |
| TTAAACACGCTTTACAAGAG+TGG | 0.532667 | 8.1:+4499412 | MS.gene88672:CDS |
| TCAGTCAAGGTATTGGGAGC+AGG | 0.534017 | 8.1:-4504718 | None:intergenic |
| CAGTGGAACTTGGAATCGAC+AGG | 0.536873 | 8.1:-4497227 | None:intergenic |
| AAAGCTCCAATTGAGGGGCT+GGG | 0.537060 | 8.1:-4500537 | None:intergenic |
| GGAAACAAAGATATATCTAT+GGG | 0.538401 | 8.1:+4500571 | MS.gene88672:CDS |
| GGAAGATTGGAATTGATGAA+AGG | 0.538609 | 8.1:-4504571 | None:intergenic |
| ATATCAGGTCGGGTAGAAGA+AGG | 0.544326 | 8.1:-4504676 | None:intergenic |
| GGGGTGAGAAGAGGATTTGG+GGG | 0.544891 | 8.1:-4504605 | None:intergenic |
| CTGTCGATTCCAAGTTCCAC+TGG | 0.545124 | 8.1:+4497228 | MS.gene88672:CDS |
| AATAGGCTATTACCAGAAGC+AGG | 0.546838 | 8.1:-4507496 | None:intergenic |
| CATTATGTGGACCGCCCAGA+TGG | 0.549135 | 8.1:+4502032 | MS.gene88672:CDS |
| GGTAAATCTGTTCTCAGAAG+AGG | 0.550061 | 8.1:-4502090 | None:intergenic |
| TTACAGCCACAGGGTTAAAG+AGG | 0.550287 | 8.1:+4499368 | MS.gene88672:CDS |
| GGAGGTGGAGATATCAGGTC+GGG | 0.555612 | 8.1:-4504686 | None:intergenic |
| TAATCGTGAAGATCCTGGTA+AGG | 0.562164 | 8.1:+4504816 | MS.gene88672:CDS |
| CAGCAACTGTTAATCCATCT+GGG | 0.562264 | 8.1:-4502046 | None:intergenic |
| AATTATAGTCCTTGTACAAG+AGG | 0.562661 | 8.1:-4497188 | None:intergenic |
| GCAGCAGAAAGCTCCAATTG+AGG | 0.563516 | 8.1:-4500544 | None:intergenic |
| TTGCGTGATTGGGATCTTTG+GGG | 0.563543 | 8.1:+4504841 | MS.gene88672:CDS |
| TTGCTGCTGAACTCGCTCAC+AGG | 0.569987 | 8.1:+4502063 | MS.gene88672:CDS |
| AAGCATGTTTCTTGGACACC+GGG | 0.581324 | 8.1:+4502907 | MS.gene88672:CDS |
| TTCTACTGTCAAGAAAGGCA+TGG | 0.582877 | 8.1:+4503083 | MS.gene88672:CDS |
| GGGTGAGAAGAGGATTTGGG+GGG | 0.585558 | 8.1:-4504604 | None:intergenic |
| CAGACATCACTCACAAAGGC+AGG | 0.586272 | 8.1:+4503160 | MS.gene88672:CDS |
| TGGTGGACGAGCAGGAAGAA+CGG | 0.593661 | 8.1:-4504503 | None:intergenic |
| AATTTGGCCTCCACGCTCGT+TGG | 0.596800 | 8.1:-4502193 | None:intergenic |
| GAGATTGGCAAAAGAGCAAG+AGG | 0.602548 | 8.1:+4496569 | MS.gene88672:CDS |
| AGATTGGGATGATGCGTGAA+GGG | 0.609226 | 8.1:-4504437 | None:intergenic |
| GAAGCGCGTGGAGGAGATGG+TGG | 0.610651 | 8.1:-4504520 | None:intergenic |
| TGATAAAGGACAGTCTCTGA+AGG | 0.622839 | 8.1:+4501998 | MS.gene88672:CDS |
| GGAGGGAGAGAAGAAGAAGG+GGG | 0.622958 | 8.1:-4504640 | None:intergenic |
| ATCCCAAACAGGTTCAGTCA+AGG | 0.623683 | 8.1:-4504731 | None:intergenic |
| GAATCGACAGGCTAAACTTG+TGG | 0.624169 | 8.1:-4497215 | None:intergenic |
| TATTAACTGTGAGGTCCCAA+AGG | 0.625879 | 8.1:-4502111 | None:intergenic |
| CAGATTGGGATGATGCGTGA+AGG | 0.631170 | 8.1:-4504438 | None:intergenic |
| GGTCGGGTAGAAGAAGGAGG+AGG | 0.632753 | 8.1:-4504670 | None:intergenic |
| ACCCGATCACAAGTCAGGAA+AGG | 0.634719 | 8.1:+4499810 | MS.gene88672:CDS |
| TTGATCCCTCTTTAACCCTG+TGG | 0.639663 | 8.1:-4499374 | None:intergenic |
| GTGACGGGGATTGAAGCGCG+TGG | 0.640207 | 8.1:-4504532 | None:intergenic |
| TACAGGGCCTTACAGCCACA+GGG | 0.642664 | 8.1:+4499359 | MS.gene88672:intron |
| TTGACTGCAGAACTCATGAA+AGG | 0.643060 | 8.1:-4507868 | None:intergenic |
| TGGTATGTGTGACATTGGCG+TGG | 0.645314 | 8.1:+4507827 | MS.gene88672:CDS |
| AAGAAGTGGAAGAAGTGACG+GGG | 0.646121 | 8.1:-4504546 | None:intergenic |
| CTTGAATCAATAGCTGCATG+AGG | 0.648302 | 8.1:-4500502 | None:intergenic |
| TCCAATGCCAACGAGCGTGG+AGG | 0.648958 | 8.1:+4502186 | MS.gene88672:CDS |
| AGCAGAAAGCTCCAATTGAG+GGG | 0.649829 | 8.1:-4500542 | None:intergenic |
| GGTAGTGGTATGTGTGACAT+TGG | 0.650583 | 8.1:+4507822 | MS.gene88672:CDS |
| CGGAGGTGGAGATATCAGGT+CGG | 0.655202 | 8.1:-4504687 | None:intergenic |
| TCAGGTCGGGTAGAAGAAGG+AGG | 0.656155 | 8.1:-4504673 | None:intergenic |
| TACAGCCACAGGGTTAAAGA+GGG | 0.657577 | 8.1:+4499369 | MS.gene88672:CDS |
| GGGAGCAGGTCCGAATCCGG+AGG | 0.659096 | 8.1:-4504704 | None:intergenic |
| GATTGGGATGATGCGTGAAG+GGG | 0.661855 | 8.1:-4504436 | None:intergenic |
| ACGGGGATTGAAGCGCGTGG+AGG | 0.669835 | 8.1:-4504529 | None:intergenic |
| TTGTCAGACATCACTCACAA+AGG | 0.681977 | 8.1:+4503156 | MS.gene88672:CDS |
| GGTAAGAATTACCAATCCAG+TGG | 0.685271 | 8.1:-4497244 | None:intergenic |
| TTAATGCACCAACATCAAGA+GGG | 0.688001 | 8.1:-4507765 | None:intergenic |
| TGGACGAGCAGGAAGAACGG+TGG | 0.746906 | 8.1:-4504500 | None:intergenic |
| CAACTGTTAATCCATCTGGG+CGG | 0.787246 | 8.1:-4502043 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 4496542 | 4507972 | 4496542 | ID=MS.gene88672 |
| chr8.1 | mRNA | 4496542 | 4507972 | 4496542 | ID=MS.gene88672.t1;Parent=MS.gene88672 |
| chr8.1 | exon | 4496542 | 4496590 | 4496542 | ID=MS.gene88672.t1.exon1;Parent=MS.gene88672.t1 |
| chr8.1 | CDS | 4496542 | 4496590 | 4496542 | ID=cds.MS.gene88672.t1;Parent=MS.gene88672.t1 |
| chr8.1 | exon | 4497187 | 4497254 | 4497187 | ID=MS.gene88672.t1.exon2;Parent=MS.gene88672.t1 |
| chr8.1 | CDS | 4497187 | 4497254 | 4497187 | ID=cds.MS.gene88672.t1;Parent=MS.gene88672.t1 |
| chr8.1 | exon | 4499364 | 4499474 | 4499364 | ID=MS.gene88672.t1.exon3;Parent=MS.gene88672.t1 |
| chr8.1 | CDS | 4499364 | 4499474 | 4499364 | ID=cds.MS.gene88672.t1;Parent=MS.gene88672.t1 |
| chr8.1 | exon | 4499739 | 4499831 | 4499739 | ID=MS.gene88672.t1.exon4;Parent=MS.gene88672.t1 |
| chr8.1 | CDS | 4499739 | 4499831 | 4499739 | ID=cds.MS.gene88672.t1;Parent=MS.gene88672.t1 |
| chr8.1 | exon | 4500481 | 4500689 | 4500481 | ID=MS.gene88672.t1.exon5;Parent=MS.gene88672.t1 |
| chr8.1 | CDS | 4500481 | 4500689 | 4500481 | ID=cds.MS.gene88672.t1;Parent=MS.gene88672.t1 |
| chr8.1 | exon | 4501995 | 4502237 | 4501995 | ID=MS.gene88672.t1.exon6;Parent=MS.gene88672.t1 |
| chr8.1 | CDS | 4501995 | 4502237 | 4501995 | ID=cds.MS.gene88672.t1;Parent=MS.gene88672.t1 |
| chr8.1 | exon | 4502896 | 4502928 | 4502896 | ID=MS.gene88672.t1.exon7;Parent=MS.gene88672.t1 |
| chr8.1 | CDS | 4502896 | 4502928 | 4502896 | ID=cds.MS.gene88672.t1;Parent=MS.gene88672.t1 |
| chr8.1 | exon | 4503023 | 4503181 | 4503023 | ID=MS.gene88672.t1.exon8;Parent=MS.gene88672.t1 |
| chr8.1 | CDS | 4503023 | 4503181 | 4503023 | ID=cds.MS.gene88672.t1;Parent=MS.gene88672.t1 |
| chr8.1 | exon | 4504426 | 4504924 | 4504426 | ID=MS.gene88672.t1.exon9;Parent=MS.gene88672.t1 |
| chr8.1 | CDS | 4504426 | 4504924 | 4504426 | ID=cds.MS.gene88672.t1;Parent=MS.gene88672.t1 |
| chr8.1 | exon | 4507431 | 4507505 | 4507431 | ID=MS.gene88672.t1.exon10;Parent=MS.gene88672.t1 |
| chr8.1 | CDS | 4507431 | 4507505 | 4507431 | ID=cds.MS.gene88672.t1;Parent=MS.gene88672.t1 |
| chr8.1 | exon | 4507712 | 4507972 | 4507712 | ID=MS.gene88672.t1.exon11;Parent=MS.gene88672.t1 |
| chr8.1 | CDS | 4507712 | 4507972 | 4507712 | ID=cds.MS.gene88672.t1;Parent=MS.gene88672.t1 |
| Gene Sequence |
| Protein sequence |
