Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55817.t1 | KEH21251.1 | 98.2 | 869 | 16 | 0 | 1 | 869 | 1 | 869 | 0.00E+00 | 1528.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55817.t1 | Q5SMU7 | 68.8 | 674 | 203 | 3 | 197 | 869 | 126 | 793 | 8.2e-277 | 954.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55817.t1 | A0A072TVQ3 | 98.2 | 869 | 16 | 0 | 1 | 869 | 1 | 869 | 0.0e+00 | 1528.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene55817.t1 | TR | PHD |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049397 | MS.gene55817 | 0.827163 | 1.82E-54 | -1.69E-46 |
MS.gene049596 | MS.gene55817 | 0.844855 | 5.84E-59 | -1.69E-46 |
MS.gene04985 | MS.gene55817 | 0.86893 | 4.53E-66 | -1.69E-46 |
MS.gene049989 | MS.gene55817 | 0.889733 | 1.86E-73 | -1.69E-46 |
MS.gene050297 | MS.gene55817 | 0.882202 | 1.27E-70 | -1.69E-46 |
MS.gene050648 | MS.gene55817 | 0.82581 | 3.83E-54 | -1.69E-46 |
MS.gene05124 | MS.gene55817 | 0.852244 | 5.24E-61 | -1.69E-46 |
MS.gene051263 | MS.gene55817 | 0.813169 | 2.93E-51 | -1.69E-46 |
MS.gene051339 | MS.gene55817 | 0.80198 | 6.97E-49 | -1.69E-46 |
MS.gene051423 | MS.gene55817 | 0.807135 | 5.86E-50 | -1.69E-46 |
MS.gene051629 | MS.gene55817 | 0.831547 | 1.57E-55 | -1.69E-46 |
MS.gene051742 | MS.gene55817 | 0.816615 | 5.05E-52 | -1.69E-46 |
MS.gene051816 | MS.gene55817 | 0.808405 | 3.15E-50 | -1.69E-46 |
MS.gene051896 | MS.gene55817 | 0.802423 | 5.65E-49 | -1.69E-46 |
MS.gene051914 | MS.gene55817 | 0.836721 | 7.93E-57 | -1.69E-46 |
MS.gene051955 | MS.gene55817 | 0.828049 | 1.12E-54 | -1.69E-46 |
MS.gene052143 | MS.gene55817 | 0.836112 | 1.13E-56 | -1.69E-46 |
MS.gene052308 | MS.gene55817 | 0.843873 | 1.07E-58 | -1.69E-46 |
MS.gene052367 | MS.gene55817 | 0.894023 | 3.64E-75 | -1.69E-46 |
MS.gene053173 | MS.gene55817 | 0.899479 | 1.90E-77 | -1.69E-46 |
MS.gene053348 | MS.gene55817 | 0.871191 | 8.25E-67 | -1.69E-46 |
MS.gene053416 | MS.gene55817 | 0.892109 | 2.15E-74 | -1.69E-46 |
MS.gene053417 | MS.gene55817 | 0.891203 | 4.92E-74 | -1.69E-46 |
MS.gene05369 | MS.gene55817 | 0.839986 | 1.14E-57 | -1.69E-46 |
MS.gene053929 | MS.gene55817 | 0.803644 | 3.16E-49 | -1.69E-46 |
MS.gene054459 | MS.gene55817 | 0.822397 | 2.42E-53 | -1.69E-46 |
MS.gene054551 | MS.gene55817 | 0.893361 | 6.75E-75 | -1.69E-46 |
MS.gene054552 | MS.gene55817 | 0.832313 | 1.02E-55 | -1.69E-46 |
MS.gene054593 | MS.gene55817 | 0.867754 | 1.08E-65 | -1.69E-46 |
MS.gene054633 | MS.gene55817 | 0.83346 | 5.26E-56 | -1.69E-46 |
MS.gene054643 | MS.gene55817 | 0.839435 | 1.59E-57 | -1.69E-46 |
MS.gene054662 | MS.gene55817 | 0.843478 | 1.37E-58 | -1.69E-46 |
MS.gene054885 | MS.gene55817 | 0.837861 | 4.05E-57 | -1.69E-46 |
MS.gene055308 | MS.gene55817 | 0.858715 | 6.81E-63 | -1.69E-46 |
MS.gene055411 | MS.gene55817 | 0.841493 | 4.60E-58 | -1.69E-46 |
MS.gene055578 | MS.gene55817 | 0.870642 | 1.25E-66 | -1.69E-46 |
MS.gene055579 | MS.gene55817 | 0.800349 | 1.50E-48 | -1.69E-46 |
MS.gene055957 | MS.gene55817 | 0.868709 | 5.34E-66 | -1.69E-46 |
MS.gene056041 | MS.gene55817 | 0.892418 | 1.62E-74 | -1.69E-46 |
MS.gene05640 | MS.gene55817 | 0.894676 | 1.97E-75 | -1.69E-46 |
MS.gene056526 | MS.gene55817 | 0.86203 | 6.76E-64 | -1.69E-46 |
MS.gene056528 | MS.gene55817 | 0.806937 | 6.45E-50 | -1.69E-46 |
MS.gene05732 | MS.gene55817 | 0.822591 | 2.18E-53 | -1.69E-46 |
MS.gene057367 | MS.gene55817 | 0.85777 | 1.30E-62 | -1.69E-46 |
MS.gene057458 | MS.gene55817 | 0.85478 | 9.80E-62 | -1.69E-46 |
MS.gene057483 | MS.gene55817 | 0.815286 | 9.99E-52 | -1.69E-46 |
MS.gene058128 | MS.gene55817 | 0.817048 | 4.04E-52 | -1.69E-46 |
MS.gene058818 | MS.gene55817 | 0.874556 | 6.16E-68 | -1.69E-46 |
MS.gene058827 | MS.gene55817 | 0.840869 | 6.70E-58 | -1.69E-46 |
MS.gene058828 | MS.gene55817 | 0.809148 | 2.18E-50 | -1.69E-46 |
MS.gene058844 | MS.gene55817 | 0.836642 | 8.30E-57 | -1.69E-46 |
MS.gene058853 | MS.gene55817 | 0.839912 | 1.19E-57 | -1.69E-46 |
MS.gene059300 | MS.gene55817 | 0.834175 | 3.49E-56 | -1.69E-46 |
MS.gene059553 | MS.gene55817 | 0.86244 | 5.06E-64 | -1.69E-46 |
MS.gene060275 | MS.gene55817 | 0.825309 | 5.03E-54 | -1.69E-46 |
MS.gene060473 | MS.gene55817 | 0.884395 | 1.99E-71 | -1.69E-46 |
MS.gene060565 | MS.gene55817 | 0.879387 | 1.30E-69 | -1.69E-46 |
MS.gene06057 | MS.gene55817 | 0.84413 | 9.15E-59 | -1.69E-46 |
MS.gene06093 | MS.gene55817 | 0.920636 | 9.96E-88 | -1.69E-46 |
MS.gene061099 | MS.gene55817 | 0.840426 | 8.76E-58 | -1.69E-46 |
MS.gene061260 | MS.gene55817 | 0.903604 | 2.92E-79 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55817.t1 | MTR_8g099640 | 98.159 | 869 | 16 | 0 | 1 | 869 | 1 | 869 | 0.0 | 1779 |
MS.gene55817.t1 | MTR_3g060290 | 87.805 | 82 | 7 | 3 | 165 | 245 | 17 | 96 | 3.64e-32 | 122 |
MS.gene55817.t1 | MTR_3g463490 | 30.855 | 269 | 166 | 7 | 493 | 754 | 80 | 335 | 3.95e-27 | 116 |
MS.gene55817.t1 | MTR_3g463490 | 30.855 | 269 | 166 | 7 | 493 | 754 | 80 | 335 | 6.69e-27 | 116 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55817.t1 | AT4G14700 | 65.952 | 746 | 210 | 10 | 130 | 869 | 81 | 788 | 0.0 | 969 |
MS.gene55817.t1 | AT4G12620 | 70.606 | 677 | 180 | 6 | 197 | 869 | 131 | 792 | 0.0 | 961 |
MS.gene55817.t1 | AT1G07270 | 28.481 | 316 | 212 | 9 | 490 | 799 | 110 | 417 | 1.74e-30 | 126 |
MS.gene55817.t1 | AT1G07270 | 28.707 | 317 | 210 | 10 | 490 | 799 | 110 | 417 | 2.87e-30 | 126 |
MS.gene55817.t1 | AT2G29680 | 27.469 | 324 | 207 | 11 | 489 | 799 | 112 | 420 | 1.27e-26 | 115 |
MS.gene55817.t1 | AT2G29680 | 25.581 | 344 | 197 | 12 | 489 | 788 | 112 | 440 | 2.85e-21 | 99.4 |
Find 214 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCGATGAATCTGGCGATTT+TGG | 0.133439 | 4.3:-4398254 | None:intergenic |
GTTAGTTACCGACTGGTTTC+TGG | 0.202474 | 4.3:-4401718 | None:intergenic |
TGAAGCTGCTGATAATTATA+TGG | 0.208304 | 4.3:-4402136 | None:intergenic |
CTGCACAAGGGACGGTTCTT+TGG | 0.215974 | 4.3:+4400904 | MS.gene55817:CDS |
CGCCCAACAGAAGTCTCTTC+TGG | 0.247491 | 4.3:-4399010 | None:intergenic |
TCATCGGTTTGCATCATTAA+TGG | 0.257487 | 4.3:-4405234 | None:intergenic |
CTCTATATTCACGGTGTTCC+GGG | 0.266627 | 4.3:+4401209 | MS.gene55817:CDS |
TGGCAGCTGAAGAAGTAATA+AGG | 0.285779 | 4.3:-4405214 | None:intergenic |
CCTCTATATTCACGGTGTTC+CGG | 0.288739 | 4.3:+4401208 | MS.gene55817:CDS |
GTCATATATGAAGCATTAAA+TGG | 0.289669 | 4.3:+4401570 | MS.gene55817:CDS |
CTTCAGGTTGCAGCTATATC+AGG | 0.290038 | 4.3:+4402340 | MS.gene55817:intron |
TTTACAGATTTCGATGAATC+TGG | 0.295754 | 4.3:-4398263 | None:intergenic |
AACCTACATTCCTCCACTTC+TGG | 0.299054 | 4.3:-4398581 | None:intergenic |
CCGATTCTTCTCCCTCTTCT+CGG | 0.303926 | 4.3:-4398071 | None:intergenic |
CTAGCTTTGGCATACTCCTT+AGG | 0.308499 | 4.3:-4400390 | None:intergenic |
ATCTCCCTCATTGCTAGCTT+TGG | 0.313313 | 4.3:-4400403 | None:intergenic |
TTCTTACCCTTCGGCGGCTT+TGG | 0.317699 | 4.3:-4398761 | None:intergenic |
GGAGATCAATGGTCTGAAAT+TGG | 0.328776 | 4.3:+4401437 | MS.gene55817:CDS |
GGGAGATTGAAGAAGCTTCT+TGG | 0.333604 | 4.3:-4397910 | None:intergenic |
AAAGAATTCCAGAGCATATA+AGG | 0.339598 | 4.3:+4400947 | MS.gene55817:CDS |
TGAGATTCGGCAACGAGGTT+GGG | 0.339599 | 4.3:-4398032 | None:intergenic |
ATACCTGCAGCAACATTATC+AGG | 0.340644 | 4.3:-4402442 | None:intergenic |
TTTGTAGAAGGGAAGAAAAC+TGG | 0.345764 | 4.3:+4401639 | MS.gene55817:CDS |
CTAAATGAGAGGTTTGTAGA+AGG | 0.346073 | 4.3:+4401627 | MS.gene55817:CDS |
ATTGAGTGTGATAGTTGTTT+AGG | 0.355173 | 4.3:+4398632 | MS.gene55817:CDS |
TTGATCTCCACGAAACAGTA+TGG | 0.382365 | 4.3:-4401423 | None:intergenic |
CCACATATCCAATCCCCTTC+AGG | 0.385042 | 4.3:-4398698 | None:intergenic |
GCTGAATTGAAGAAGAGAAA+TGG | 0.386079 | 4.3:+4398314 | MS.gene55817:CDS |
AGGAGATGCACGTCGTGCTT+TGG | 0.389364 | 4.3:+4402360 | MS.gene55817:CDS |
TAGCTTTGGCATACTCCTTA+GGG | 0.393164 | 4.3:-4400389 | None:intergenic |
TTTCAACTCACTTGAATATG+AGG | 0.394384 | 4.3:-4403835 | None:intergenic |
TATTTCTGACAATCAATGTC+TGG | 0.396034 | 4.3:+4401178 | MS.gene55817:CDS |
ATAAGTCTTACCCAACTTGC+AGG | 0.400447 | 4.3:-4404890 | None:intergenic |
AGAGTGACGGTGACGAAGAC+TGG | 0.402154 | 4.3:+4400681 | MS.gene55817:CDS |
GGAGATTGAAGAAGCTTCTT+GGG | 0.412877 | 4.3:-4397909 | None:intergenic |
AGGGAGATTCCCTTAAGGTT+TGG | 0.416413 | 4.3:+4398339 | MS.gene55817:CDS |
CTAACAAGCTTCTTACCCTT+CGG | 0.416592 | 4.3:-4398770 | None:intergenic |
GCTATATCGGACCAACGATT+TGG | 0.417826 | 4.3:+4399057 | MS.gene55817:CDS |
TGAGAATTGTGAACGGAGGT+TGG | 0.424141 | 4.3:-4397943 | None:intergenic |
AAAACGGTTGTTACAAGAGC+TGG | 0.428477 | 4.3:+4398431 | MS.gene55817:CDS |
GAAGCTGCTGATAATTATAT+GGG | 0.430667 | 4.3:-4402135 | None:intergenic |
ATTTGAGCAGAGAGCTATAT+CGG | 0.433378 | 4.3:+4399044 | MS.gene55817:CDS |
TTCTTTGGACTTCAGAAGAT+AGG | 0.436400 | 4.3:+4400919 | MS.gene55817:CDS |
ATGATATCCTCCTGCAAGTT+GGG | 0.437262 | 4.3:+4404880 | MS.gene55817:CDS |
AGCAATGGTGAAGTGTTTCC+TGG | 0.439086 | 4.3:+4404855 | MS.gene55817:CDS |
GAGCTTTACAAAACAGGAAT+GGG | 0.441059 | 4.3:+4404407 | MS.gene55817:CDS |
TCCGACGTCGCCGGATCAAT+CGG | 0.442884 | 4.3:+4398367 | MS.gene55817:CDS |
GACGGCGGTGAATTTGAAGT+TGG | 0.443655 | 4.3:+4398506 | MS.gene55817:CDS |
GGGCGTTGCCTCTATATTCA+CGG | 0.455755 | 4.3:+4401200 | MS.gene55817:CDS |
GGCTTCAATCAAGTGATTTG+TGG | 0.457739 | 4.3:+4398807 | MS.gene55817:CDS |
CATTCCAAGCTAATTGTGAT+AGG | 0.457837 | 4.3:+4401864 | MS.gene55817:CDS |
GAGATTCGGCAACGAGGTTG+GGG | 0.462809 | 4.3:-4398031 | None:intergenic |
ATCATTTCGAGTCGCCTCAA+TGG | 0.464299 | 4.3:+4402163 | MS.gene55817:CDS |
ACGGCGGTGAATTTGAAGTT+GGG | 0.465132 | 4.3:+4398507 | MS.gene55817:CDS |
CTTACCTATCACAATTAGCT+TGG | 0.465486 | 4.3:-4401868 | None:intergenic |
AAGATGTTCCTGAAGGGGAT+TGG | 0.466368 | 4.3:+4398690 | MS.gene55817:CDS |
GGCAGCTGAAGAAGTAATAA+GGG | 0.468817 | 4.3:-4405213 | None:intergenic |
GTGCACGAGCTTTACAAAAC+AGG | 0.469313 | 4.3:+4404401 | MS.gene55817:CDS |
TGATTGTTGAATTTGAGATT+CGG | 0.470559 | 4.3:-4398045 | None:intergenic |
CATCAAACCATACTGTTTCG+TGG | 0.472974 | 4.3:+4401416 | MS.gene55817:CDS |
TTTCTACAAGGTAAAGACTT+AGG | 0.474900 | 4.3:-4401027 | None:intergenic |
TTGTGAGACCTTATATGCTC+TGG | 0.474919 | 4.3:-4400955 | None:intergenic |
TTCTTAGTTTCCGATTGATC+CGG | 0.476110 | 4.3:-4398377 | None:intergenic |
GCCCAACAGAAGTCTCTTCT+GGG | 0.476671 | 4.3:-4399009 | None:intergenic |
ATACGAGGAAGTAACTTCTC+TGG | 0.476939 | 4.3:-4402076 | None:intergenic |
CGGAGCGAACCAAACCTTAA+GGG | 0.479931 | 4.3:-4398348 | None:intergenic |
GCTTCAATCAAGTGATTTGT+GGG | 0.480427 | 4.3:+4398808 | MS.gene55817:CDS |
CCTGAAGGGGATTGGATATG+TGG | 0.480446 | 4.3:+4398698 | MS.gene55817:CDS |
TGGGAAGGGAGATTCCCTTA+AGG | 0.483741 | 4.3:+4398334 | MS.gene55817:CDS |
TCGGAGCGAACCAAACCTTA+AGG | 0.483771 | 4.3:-4398349 | None:intergenic |
TTGAGATTCGGCAACGAGGT+TGG | 0.484913 | 4.3:-4398033 | None:intergenic |
CTGAATTGAAGAAGAGAAAT+GGG | 0.485254 | 4.3:+4398315 | MS.gene55817:CDS |
GAGTGTGATAGTTGTTTAGG+TGG | 0.490466 | 4.3:+4398635 | MS.gene55817:CDS |
TTGGTTCGCTCCGACGTCGC+CGG | 0.492222 | 4.3:+4398358 | MS.gene55817:CDS |
TCATGTCTCTGCGGCAGCAA+TGG | 0.493304 | 4.3:+4404840 | MS.gene55817:CDS |
TGGTCTGAAATTGGCTTCAC+CGG | 0.494433 | 4.3:+4401446 | MS.gene55817:CDS |
TTCTGTACAATATTCTTGAC+TGG | 0.495175 | 4.3:+4401829 | MS.gene55817:CDS |
GCAGCTACTGGTGTCGGGTA+CGG | 0.495197 | 4.3:+4398975 | MS.gene55817:CDS |
TAAATGAGAGGTTTGTAGAA+GGG | 0.497183 | 4.3:+4401628 | MS.gene55817:CDS |
ATTCACGGTGTTCCGGGCAC+TGG | 0.498438 | 4.3:+4401215 | MS.gene55817:CDS |
AACAATGCAGTTGGCAATGA+CGG | 0.500318 | 4.3:+4404815 | MS.gene55817:intron |
GTGGCACAGTTTCAAACGCT+TGG | 0.500569 | 4.3:+4400461 | MS.gene55817:CDS |
GTTACAAGAGCTGGGAGAAA+AGG | 0.500757 | 4.3:+4398440 | MS.gene55817:CDS |
AAAGCCTCTGGATGCCCATT+CGG | 0.503391 | 4.3:-4402105 | None:intergenic |
GGATGGCAGCTACTGGTGTC+GGG | 0.503839 | 4.3:+4398970 | MS.gene55817:CDS |
TTCACCTTGTAAATATTCTC+CGG | 0.504027 | 4.3:-4401465 | None:intergenic |
CCGAGAAGAGGGAGAAGAAT+CGG | 0.504286 | 4.3:+4398071 | MS.gene55817:CDS |
GCAGCTAACTGATGGCTTGT+CGG | 0.504655 | 4.3:-4400788 | None:intergenic |
TGAGGTCAAGGTTGAGAAAA+CGG | 0.504688 | 4.3:+4398415 | MS.gene55817:CDS |
ATCTGTGAGGGTCGTAAGAT+GGG | 0.506846 | 4.3:+4398722 | MS.gene55817:CDS |
CCTCGTATATCAAGCCGAAT+GGG | 0.511380 | 4.3:+4402091 | MS.gene55817:CDS |
GATAGTACCTTGCCAGTGCC+CGG | 0.512164 | 4.3:-4401227 | None:intergenic |
ATCCCAGAAGAGACTTCTGT+TGG | 0.512492 | 4.3:+4399007 | MS.gene55817:CDS |
TCAAGACGAGATTTCGCAGC+TGG | 0.512532 | 4.3:-4398107 | None:intergenic |
CGGAAACTAAGAAGAGAAAG+AGG | 0.512657 | 4.3:+4398387 | MS.gene55817:CDS |
GATCTGTGAGGGTCGTAAGA+TGG | 0.515072 | 4.3:+4398721 | MS.gene55817:CDS |
TTGAAGTCAGAAGTTGATGC+AGG | 0.515204 | 4.3:+4401390 | MS.gene55817:CDS |
ATTTCTGACAATCAATGTCT+GGG | 0.516051 | 4.3:+4401179 | MS.gene55817:CDS |
AGCTTGGAATGTGGCTTGGT+TGG | 0.517458 | 4.3:-4401852 | None:intergenic |
CAAATATATCAATTCCATTG+AGG | 0.517649 | 4.3:-4402177 | None:intergenic |
TGGAGCAAATGCAATTTCAT+CGG | 0.518476 | 4.3:-4398234 | None:intergenic |
TACTGTTTCGTGGAGATCAA+TGG | 0.518500 | 4.3:+4401426 | MS.gene55817:CDS |
GATCCTGATAATGTTGCTGC+AGG | 0.521500 | 4.3:+4402439 | MS.gene55817:CDS |
TACAAGAAAGTTGTTTATGA+CGG | 0.522606 | 4.3:+4398488 | MS.gene55817:CDS |
GCATTAAATGGACACAGGGT+TGG | 0.523201 | 4.3:+4401582 | MS.gene55817:CDS |
AAAGAGGAAGAATGAGGTCA+AGG | 0.524216 | 4.3:+4398403 | MS.gene55817:CDS |
GGTAAGGAATGAGGAGTGAG+AGG | 0.524682 | 4.3:-4397966 | None:intergenic |
CAAACCTCTCATTTAGCAAA+CGG | 0.525477 | 4.3:-4401620 | None:intergenic |
ATGGGGCAAAGCAAAGCCTC+TGG | 0.529383 | 4.3:-4402117 | None:intergenic |
AGCGTTTGAAACTGTGCCAC+TGG | 0.529464 | 4.3:-4400458 | None:intergenic |
TCAACATACTTATTTCTACA+AGG | 0.530757 | 4.3:-4401039 | None:intergenic |
TTGAAGAAGAGAAATGGGAA+GGG | 0.532289 | 4.3:+4398320 | MS.gene55817:CDS |
GCTCGTGCACCATAGCTGTC+AGG | 0.532743 | 4.3:-4404388 | None:intergenic |
CGTGGATCTACGTGTAGGTA+AGG | 0.533392 | 4.3:-4397982 | None:intergenic |
CTCGATGTTGGCCAAATCGT+TGG | 0.533909 | 4.3:-4399068 | None:intergenic |
TGGATGGCAGCTACTGGTGT+CGG | 0.533932 | 4.3:+4398969 | MS.gene55817:CDS |
ATCTGTAAAGAAGAGGAAGC+AGG | 0.534383 | 4.3:+4398277 | MS.gene55817:CDS |
TCACTTGAATATGAGGTGCT+TGG | 0.534848 | 4.3:-4403828 | None:intergenic |
CGAGCTTTACAAAACAGGAA+TGG | 0.537464 | 4.3:+4404406 | MS.gene55817:CDS |
AATTAGCTTGGAATGTGGCT+TGG | 0.540690 | 4.3:-4401856 | None:intergenic |
CGGTGTTCCGGGCACTGGCA+AGG | 0.541081 | 4.3:+4401220 | MS.gene55817:CDS |
ATCCAGAAGTGGAGGAATGT+AGG | 0.542570 | 4.3:+4398579 | MS.gene55817:CDS |
TAAATGGACACAGGGTTGGA+TGG | 0.543748 | 4.3:+4401586 | MS.gene55817:CDS |
GTGAAGCAGGTGCCAAGCAC+AGG | 0.543759 | 4.3:+4405147 | MS.gene55817:CDS |
AGTGTGATAGTTGTTTAGGT+GGG | 0.547500 | 4.3:+4398636 | MS.gene55817:CDS |
CATGATATCCTCCTGCAAGT+TGG | 0.553301 | 4.3:+4404879 | MS.gene55817:CDS |
CCGGAACACCGTGAATATAG+AGG | 0.553353 | 4.3:-4401208 | None:intergenic |
CATCGAAATCTGTAAAGAAG+AGG | 0.553381 | 4.3:+4398270 | MS.gene55817:CDS |
TCCTCGTATATCAAGCCGAA+TGG | 0.555101 | 4.3:+4402090 | MS.gene55817:CDS |
TTCTTGGGAGTTGAAGCCAT+TGG | 0.556223 | 4.3:-4397894 | None:intergenic |
GGGATGATGTTTATGTGAAG+AGG | 0.559397 | 4.3:+4398528 | MS.gene55817:CDS |
TGCAGGAGGATATCATGTCC+AGG | 0.562882 | 4.3:-4404873 | None:intergenic |
GAAGAGAAAGAGGAAGAATG+AGG | 0.565359 | 4.3:+4398397 | MS.gene55817:CDS |
AACAATCAACTCCGAGAAGA+GGG | 0.566074 | 4.3:+4398060 | MS.gene55817:CDS |
AGCTCTCTGCTCAAATTATG+TGG | 0.566453 | 4.3:-4399037 | None:intergenic |
TTCATACTGCAGCTAACTGA+TGG | 0.566543 | 4.3:-4400796 | None:intergenic |
ATTGAAGAAGAGAAATGGGA+AGG | 0.568468 | 4.3:+4398319 | MS.gene55817:CDS |
TTGGATATGTGGGATCTGTG+AGG | 0.570339 | 4.3:+4398709 | MS.gene55817:CDS |
ACAATCCATCACCTCGATGT+TGG | 0.575437 | 4.3:-4399080 | None:intergenic |
CTCTCCGTTTGCTAAATGAG+AGG | 0.575524 | 4.3:+4401616 | MS.gene55817:CDS |
TGTGGGCTGCTCGCATTGAG+AGG | 0.577481 | 4.3:+4398825 | MS.gene55817:CDS |
AGGGAAGAAAACTGGAGAAG+AGG | 0.577588 | 4.3:+4401647 | MS.gene55817:CDS |
TCCCAGAAGAGACTTCTGTT+GGG | 0.577921 | 4.3:+4399008 | MS.gene55817:CDS |
AAGAAGTGGATGGCAGCTAC+TGG | 0.578137 | 4.3:+4398963 | MS.gene55817:CDS |
GGGCTTTGAGAAATAACCTC+GGG | 0.578651 | 4.3:-4405193 | None:intergenic |
CGTTGAAAGATGTTCCTGAA+GGG | 0.581179 | 4.3:+4398684 | MS.gene55817:CDS |
TCCGATTGATCCGGCGACGT+CGG | 0.582582 | 4.3:-4398368 | None:intergenic |
TATGCCAAAGCTAGCAATGA+GGG | 0.585809 | 4.3:+4400399 | MS.gene55817:CDS |
TGAGAGGTGAGAATTGTGAA+CGG | 0.585848 | 4.3:-4397950 | None:intergenic |
TTGCTATGTCATGATCCCTA+AGG | 0.591823 | 4.3:+4400374 | MS.gene55817:CDS |
TTGTTAGAACAATGCGTCAG+AGG | 0.591921 | 4.3:+4398786 | MS.gene55817:CDS |
CCGTTGAAAGATGTTCCTGA+AGG | 0.592540 | 4.3:+4398683 | MS.gene55817:CDS |
CTGAAGGGGATTGGATATGT+GGG | 0.593658 | 4.3:+4398699 | MS.gene55817:CDS |
ACACAGGGTTGGATGGAAAG+AGG | 0.594099 | 4.3:+4401593 | MS.gene55817:CDS |
AGGAAAGGGACTTGTTTGCA+TGG | 0.594820 | 4.3:+4403774 | MS.gene55817:intron |
ACAAGCTTCTTACCCTTCGG+CGG | 0.596059 | 4.3:-4398767 | None:intergenic |
CAACAATCAACTCCGAGAAG+AGG | 0.596926 | 4.3:+4398059 | MS.gene55817:CDS |
TAGCAGTATATGGAAAGAAG+TGG | 0.597595 | 4.3:+4398949 | MS.gene55817:intron |
AAACGGTTGTTACAAGAGCT+GGG | 0.597984 | 4.3:+4398432 | MS.gene55817:CDS |
GTTGAAAGATGTTCCTGAAG+GGG | 0.598838 | 4.3:+4398685 | MS.gene55817:CDS |
ATGAAGCATTAAATGGACAC+AGG | 0.600808 | 4.3:+4401577 | MS.gene55817:CDS |
TACAGAATCTGCACAAGGGA+CGG | 0.603574 | 4.3:+4400896 | MS.gene55817:intron |
GCTGTAAGTTGGGTGAGTGT+AGG | 0.604738 | 4.3:+4405114 | MS.gene55817:intron |
GACTAATCTTGAAAGAGCAA+AGG | 0.606188 | 4.3:+4400981 | MS.gene55817:CDS |
TGGATATGTGGGATCTGTGA+GGG | 0.607873 | 4.3:+4398710 | MS.gene55817:CDS |
TTCACCGGAGAATATTTACA+AGG | 0.608665 | 4.3:+4401461 | MS.gene55817:CDS |
TTCAGGGATAGCAAATACAA+TGG | 0.610395 | 4.3:+4402048 | MS.gene55817:intron |
AATTTCTGAAGAAGAGAAGT+CGG | 0.611112 | 4.3:+4398201 | MS.gene55817:CDS |
CGGCGGTGAATTTGAAGTTG+GGG | 0.617237 | 4.3:+4398508 | MS.gene55817:CDS |
CCTTCAGGAACATCTTTCAA+CGG | 0.617438 | 4.3:-4398683 | None:intergenic |
AGAAGATGCTACTTCTGATG+AGG | 0.621654 | 4.3:+4398553 | MS.gene55817:CDS |
ACAAGAGCTGGGAGAAAAGG+TGG | 0.622286 | 4.3:+4398443 | MS.gene55817:CDS |
TCGTCAATGAGCAAAATACA+TGG | 0.624876 | 4.3:-4401678 | None:intergenic |
TGAGGAAGATCCAGAAGTGG+AGG | 0.628093 | 4.3:+4398571 | MS.gene55817:CDS |
GTATGCCAAAGCTAGCAATG+AGG | 0.629062 | 4.3:+4400398 | MS.gene55817:CDS |
CTACGTGTAGGTAAGGAATG+AGG | 0.635826 | 4.3:-4397975 | None:intergenic |
CAATGAGCAAAATACATGGT+CGG | 0.635961 | 4.3:-4401674 | None:intergenic |
CCCATTCGGCTTGATATACG+AGG | 0.638148 | 4.3:-4402091 | None:intergenic |
AGATTCGGCAACGAGGTTGG+GGG | 0.640262 | 4.3:-4398030 | None:intergenic |
TGAAGCATTAAATGGACACA+GGG | 0.640411 | 4.3:+4401578 | MS.gene55817:CDS |
AGTATCGGAGTTCAAGCGCG+TGG | 0.641574 | 4.3:-4398000 | None:intergenic |
AAGCGCGTGGATCTACGTGT+AGG | 0.642274 | 4.3:-4397987 | None:intergenic |
GCTACTGGTGTCGGGTACGG+TGG | 0.642777 | 4.3:+4398978 | MS.gene55817:CDS |
GCTAACTGATGGCTTGTCGG+TGG | 0.645325 | 4.3:-4400785 | None:intergenic |
TGATGAGGAAGATCCAGAAG+TGG | 0.647235 | 4.3:+4398568 | MS.gene55817:CDS |
AGGGCTTTGAGAAATAACCT+CGG | 0.647966 | 4.3:-4405194 | None:intergenic |
ATCACAATTAGCTTGGAATG+TGG | 0.648587 | 4.3:-4401861 | None:intergenic |
AGTATATGGAAAGAAGTGGA+TGG | 0.649668 | 4.3:+4398953 | MS.gene55817:intron |
TCATGACATAGCAATGTCGA+AGG | 0.658256 | 4.3:-4400365 | None:intergenic |
AAGAAAGTTGTTTATGACGG+CGG | 0.658330 | 4.3:+4398491 | MS.gene55817:CDS |
GAGATAACGACATTCATCAA+AGG | 0.658884 | 4.3:+4401152 | MS.gene55817:CDS |
TGAGTGTACTCTCAGTGATG+AGG | 0.663135 | 4.3:+4401364 | MS.gene55817:CDS |
TCTTGTAACCAGAAACCAGT+CGG | 0.664804 | 4.3:+4401710 | MS.gene55817:CDS |
CGAAGACTGGAACATCGACA+AGG | 0.665993 | 4.3:+4400694 | MS.gene55817:CDS |
AAGCTGCTGATAATTATATG+GGG | 0.670932 | 4.3:-4402134 | None:intergenic |
GAGGTGAGAATTGTGAACGG+AGG | 0.673704 | 4.3:-4397947 | None:intergenic |
TGACATTGATGATGAAAGAG+AGG | 0.674539 | 4.3:+4400485 | MS.gene55817:CDS |
AGTCTTACCCAACTTGCAGG+AGG | 0.676386 | 4.3:-4404887 | None:intergenic |
TCAGGAACATCTTTCAACGG+TGG | 0.680289 | 4.3:-4398680 | None:intergenic |
GCTTTACAAAACAGGAATGG+GGG | 0.682677 | 4.3:+4404409 | MS.gene55817:CDS |
AGCTTTACAAAACAGGAATG+GGG | 0.683635 | 4.3:+4404408 | MS.gene55817:CDS |
AAAAGGTGGAAAGATTGCGA+AGG | 0.684724 | 4.3:+4398457 | MS.gene55817:CDS |
AATGATACAGAATCTGCACA+AGG | 0.686949 | 4.3:+4400891 | MS.gene55817:intron |
GTAAAGAAGAGGAAGCAGGA+AGG | 0.690620 | 4.3:+4398281 | MS.gene55817:CDS |
AGTTGCAGCTCAATTTCCCG+AGG | 0.692840 | 4.3:+4405177 | MS.gene55817:CDS |
TGAAGATGTTGAATATGATG+AGG | 0.693036 | 4.3:+4400736 | MS.gene55817:CDS |
CAACGATTTGGCCAACATCG+AGG | 0.693338 | 4.3:+4399069 | MS.gene55817:CDS |
TTTCTGACAATCAATGTCTG+GGG | 0.698842 | 4.3:+4401180 | MS.gene55817:CDS |
CAAGCCGAATGGGCATCCAG+AGG | 0.706358 | 4.3:+4402101 | MS.gene55817:CDS |
AATATGAATATGACATCCAG+TGG | 0.707312 | 4.3:+4400442 | MS.gene55817:CDS |
ATGACGGTTTCATGTCTCTG+CGG | 0.719836 | 4.3:+4404831 | MS.gene55817:CDS |
ATGATACAGAATCTGCACAA+GGG | 0.728041 | 4.3:+4400892 | MS.gene55817:intron |
GAATTTGAGATTCGGCAACG+AGG | 0.739754 | 4.3:-4398037 | None:intergenic |
TAGAATTCTGATGAGAGTGA+CGG | 0.741239 | 4.3:+4400668 | MS.gene55817:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 4397897 | 4405256 | 4397897 | ID=MS.gene55817 |
chr4.3 | mRNA | 4397897 | 4405256 | 4397897 | ID=MS.gene55817.t1;Parent=MS.gene55817 |
chr4.3 | exon | 4397897 | 4398846 | 4397897 | ID=MS.gene55817.t1.exon1;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4397897 | 4398846 | 4397897 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4398955 | 4399090 | 4398955 | ID=MS.gene55817.t1.exon2;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4398955 | 4399090 | 4398955 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4400354 | 4400506 | 4400354 | ID=MS.gene55817.t1.exon3;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4400354 | 4400506 | 4400354 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4400671 | 4400811 | 4400671 | ID=MS.gene55817.t1.exon4;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4400671 | 4400811 | 4400671 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4400901 | 4401052 | 4400901 | ID=MS.gene55817.t1.exon5;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4400901 | 4401052 | 4400901 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4401142 | 4401241 | 4401142 | ID=MS.gene55817.t1.exon6;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4401142 | 4401241 | 4401142 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4401360 | 4401482 | 4401360 | ID=MS.gene55817.t1.exon7;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4401360 | 4401482 | 4401360 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4401570 | 4401731 | 4401570 | ID=MS.gene55817.t1.exon8;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4401570 | 4401731 | 4401570 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4401828 | 4401885 | 4401828 | ID=MS.gene55817.t1.exon9;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4401828 | 4401885 | 4401828 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4402053 | 4402243 | 4402053 | ID=MS.gene55817.t1.exon10;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4402053 | 4402243 | 4402053 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4402346 | 4402460 | 4402346 | ID=MS.gene55817.t1.exon11;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4402346 | 4402460 | 4402346 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4403776 | 4403846 | 4403776 | ID=MS.gene55817.t1.exon12;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4403776 | 4403846 | 4403776 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4404353 | 4404448 | 4404353 | ID=MS.gene55817.t1.exon13;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4404353 | 4404448 | 4404353 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4404825 | 4404901 | 4404825 | ID=MS.gene55817.t1.exon14;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4404825 | 4404901 | 4404825 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
chr4.3 | exon | 4405115 | 4405256 | 4405115 | ID=MS.gene55817.t1.exon15;Parent=MS.gene55817.t1 |
chr4.3 | CDS | 4405115 | 4405256 | 4405115 | ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1 |
Gene Sequence |
Protein sequence |