AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55817


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55817.t1 MTR_8g099640 98.159 869 16 0 1 869 1 869 0.0 1779
MS.gene55817.t1 MTR_3g060290 87.805 82 7 3 165 245 17 96 3.64e-32 122
MS.gene55817.t1 MTR_3g463490 30.855 269 166 7 493 754 80 335 3.95e-27 116
MS.gene55817.t1 MTR_3g463490 30.855 269 166 7 493 754 80 335 6.69e-27 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55817.t1 AT4G14700 65.952 746 210 10 130 869 81 788 0.0 969
MS.gene55817.t1 AT4G12620 70.606 677 180 6 197 869 131 792 0.0 961
MS.gene55817.t1 AT1G07270 28.481 316 212 9 490 799 110 417 1.74e-30 126
MS.gene55817.t1 AT1G07270 28.707 317 210 10 490 799 110 417 2.87e-30 126
MS.gene55817.t1 AT2G29680 27.469 324 207 11 489 799 112 420 1.27e-26 115
MS.gene55817.t1 AT2G29680 25.581 344 197 12 489 788 112 440 2.85e-21 99.4

Find 214 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGATGAATCTGGCGATTT+TGG 0.133439 4.3:-4398254 None:intergenic
GTTAGTTACCGACTGGTTTC+TGG 0.202474 4.3:-4401718 None:intergenic
TGAAGCTGCTGATAATTATA+TGG 0.208304 4.3:-4402136 None:intergenic
CTGCACAAGGGACGGTTCTT+TGG 0.215974 4.3:+4400904 MS.gene55817:CDS
CGCCCAACAGAAGTCTCTTC+TGG 0.247491 4.3:-4399010 None:intergenic
TCATCGGTTTGCATCATTAA+TGG 0.257487 4.3:-4405234 None:intergenic
CTCTATATTCACGGTGTTCC+GGG 0.266627 4.3:+4401209 MS.gene55817:CDS
TGGCAGCTGAAGAAGTAATA+AGG 0.285779 4.3:-4405214 None:intergenic
CCTCTATATTCACGGTGTTC+CGG 0.288739 4.3:+4401208 MS.gene55817:CDS
GTCATATATGAAGCATTAAA+TGG 0.289669 4.3:+4401570 MS.gene55817:CDS
CTTCAGGTTGCAGCTATATC+AGG 0.290038 4.3:+4402340 MS.gene55817:intron
TTTACAGATTTCGATGAATC+TGG 0.295754 4.3:-4398263 None:intergenic
AACCTACATTCCTCCACTTC+TGG 0.299054 4.3:-4398581 None:intergenic
CCGATTCTTCTCCCTCTTCT+CGG 0.303926 4.3:-4398071 None:intergenic
CTAGCTTTGGCATACTCCTT+AGG 0.308499 4.3:-4400390 None:intergenic
ATCTCCCTCATTGCTAGCTT+TGG 0.313313 4.3:-4400403 None:intergenic
TTCTTACCCTTCGGCGGCTT+TGG 0.317699 4.3:-4398761 None:intergenic
GGAGATCAATGGTCTGAAAT+TGG 0.328776 4.3:+4401437 MS.gene55817:CDS
GGGAGATTGAAGAAGCTTCT+TGG 0.333604 4.3:-4397910 None:intergenic
AAAGAATTCCAGAGCATATA+AGG 0.339598 4.3:+4400947 MS.gene55817:CDS
TGAGATTCGGCAACGAGGTT+GGG 0.339599 4.3:-4398032 None:intergenic
ATACCTGCAGCAACATTATC+AGG 0.340644 4.3:-4402442 None:intergenic
TTTGTAGAAGGGAAGAAAAC+TGG 0.345764 4.3:+4401639 MS.gene55817:CDS
CTAAATGAGAGGTTTGTAGA+AGG 0.346073 4.3:+4401627 MS.gene55817:CDS
ATTGAGTGTGATAGTTGTTT+AGG 0.355173 4.3:+4398632 MS.gene55817:CDS
TTGATCTCCACGAAACAGTA+TGG 0.382365 4.3:-4401423 None:intergenic
CCACATATCCAATCCCCTTC+AGG 0.385042 4.3:-4398698 None:intergenic
GCTGAATTGAAGAAGAGAAA+TGG 0.386079 4.3:+4398314 MS.gene55817:CDS
AGGAGATGCACGTCGTGCTT+TGG 0.389364 4.3:+4402360 MS.gene55817:CDS
TAGCTTTGGCATACTCCTTA+GGG 0.393164 4.3:-4400389 None:intergenic
TTTCAACTCACTTGAATATG+AGG 0.394384 4.3:-4403835 None:intergenic
TATTTCTGACAATCAATGTC+TGG 0.396034 4.3:+4401178 MS.gene55817:CDS
ATAAGTCTTACCCAACTTGC+AGG 0.400447 4.3:-4404890 None:intergenic
AGAGTGACGGTGACGAAGAC+TGG 0.402154 4.3:+4400681 MS.gene55817:CDS
GGAGATTGAAGAAGCTTCTT+GGG 0.412877 4.3:-4397909 None:intergenic
AGGGAGATTCCCTTAAGGTT+TGG 0.416413 4.3:+4398339 MS.gene55817:CDS
CTAACAAGCTTCTTACCCTT+CGG 0.416592 4.3:-4398770 None:intergenic
GCTATATCGGACCAACGATT+TGG 0.417826 4.3:+4399057 MS.gene55817:CDS
TGAGAATTGTGAACGGAGGT+TGG 0.424141 4.3:-4397943 None:intergenic
AAAACGGTTGTTACAAGAGC+TGG 0.428477 4.3:+4398431 MS.gene55817:CDS
GAAGCTGCTGATAATTATAT+GGG 0.430667 4.3:-4402135 None:intergenic
ATTTGAGCAGAGAGCTATAT+CGG 0.433378 4.3:+4399044 MS.gene55817:CDS
TTCTTTGGACTTCAGAAGAT+AGG 0.436400 4.3:+4400919 MS.gene55817:CDS
ATGATATCCTCCTGCAAGTT+GGG 0.437262 4.3:+4404880 MS.gene55817:CDS
AGCAATGGTGAAGTGTTTCC+TGG 0.439086 4.3:+4404855 MS.gene55817:CDS
GAGCTTTACAAAACAGGAAT+GGG 0.441059 4.3:+4404407 MS.gene55817:CDS
TCCGACGTCGCCGGATCAAT+CGG 0.442884 4.3:+4398367 MS.gene55817:CDS
GACGGCGGTGAATTTGAAGT+TGG 0.443655 4.3:+4398506 MS.gene55817:CDS
GGGCGTTGCCTCTATATTCA+CGG 0.455755 4.3:+4401200 MS.gene55817:CDS
GGCTTCAATCAAGTGATTTG+TGG 0.457739 4.3:+4398807 MS.gene55817:CDS
CATTCCAAGCTAATTGTGAT+AGG 0.457837 4.3:+4401864 MS.gene55817:CDS
GAGATTCGGCAACGAGGTTG+GGG 0.462809 4.3:-4398031 None:intergenic
ATCATTTCGAGTCGCCTCAA+TGG 0.464299 4.3:+4402163 MS.gene55817:CDS
ACGGCGGTGAATTTGAAGTT+GGG 0.465132 4.3:+4398507 MS.gene55817:CDS
CTTACCTATCACAATTAGCT+TGG 0.465486 4.3:-4401868 None:intergenic
AAGATGTTCCTGAAGGGGAT+TGG 0.466368 4.3:+4398690 MS.gene55817:CDS
GGCAGCTGAAGAAGTAATAA+GGG 0.468817 4.3:-4405213 None:intergenic
GTGCACGAGCTTTACAAAAC+AGG 0.469313 4.3:+4404401 MS.gene55817:CDS
TGATTGTTGAATTTGAGATT+CGG 0.470559 4.3:-4398045 None:intergenic
CATCAAACCATACTGTTTCG+TGG 0.472974 4.3:+4401416 MS.gene55817:CDS
TTTCTACAAGGTAAAGACTT+AGG 0.474900 4.3:-4401027 None:intergenic
TTGTGAGACCTTATATGCTC+TGG 0.474919 4.3:-4400955 None:intergenic
TTCTTAGTTTCCGATTGATC+CGG 0.476110 4.3:-4398377 None:intergenic
GCCCAACAGAAGTCTCTTCT+GGG 0.476671 4.3:-4399009 None:intergenic
ATACGAGGAAGTAACTTCTC+TGG 0.476939 4.3:-4402076 None:intergenic
CGGAGCGAACCAAACCTTAA+GGG 0.479931 4.3:-4398348 None:intergenic
GCTTCAATCAAGTGATTTGT+GGG 0.480427 4.3:+4398808 MS.gene55817:CDS
CCTGAAGGGGATTGGATATG+TGG 0.480446 4.3:+4398698 MS.gene55817:CDS
TGGGAAGGGAGATTCCCTTA+AGG 0.483741 4.3:+4398334 MS.gene55817:CDS
TCGGAGCGAACCAAACCTTA+AGG 0.483771 4.3:-4398349 None:intergenic
TTGAGATTCGGCAACGAGGT+TGG 0.484913 4.3:-4398033 None:intergenic
CTGAATTGAAGAAGAGAAAT+GGG 0.485254 4.3:+4398315 MS.gene55817:CDS
GAGTGTGATAGTTGTTTAGG+TGG 0.490466 4.3:+4398635 MS.gene55817:CDS
TTGGTTCGCTCCGACGTCGC+CGG 0.492222 4.3:+4398358 MS.gene55817:CDS
TCATGTCTCTGCGGCAGCAA+TGG 0.493304 4.3:+4404840 MS.gene55817:CDS
TGGTCTGAAATTGGCTTCAC+CGG 0.494433 4.3:+4401446 MS.gene55817:CDS
TTCTGTACAATATTCTTGAC+TGG 0.495175 4.3:+4401829 MS.gene55817:CDS
GCAGCTACTGGTGTCGGGTA+CGG 0.495197 4.3:+4398975 MS.gene55817:CDS
TAAATGAGAGGTTTGTAGAA+GGG 0.497183 4.3:+4401628 MS.gene55817:CDS
ATTCACGGTGTTCCGGGCAC+TGG 0.498438 4.3:+4401215 MS.gene55817:CDS
AACAATGCAGTTGGCAATGA+CGG 0.500318 4.3:+4404815 MS.gene55817:intron
GTGGCACAGTTTCAAACGCT+TGG 0.500569 4.3:+4400461 MS.gene55817:CDS
GTTACAAGAGCTGGGAGAAA+AGG 0.500757 4.3:+4398440 MS.gene55817:CDS
AAAGCCTCTGGATGCCCATT+CGG 0.503391 4.3:-4402105 None:intergenic
GGATGGCAGCTACTGGTGTC+GGG 0.503839 4.3:+4398970 MS.gene55817:CDS
TTCACCTTGTAAATATTCTC+CGG 0.504027 4.3:-4401465 None:intergenic
CCGAGAAGAGGGAGAAGAAT+CGG 0.504286 4.3:+4398071 MS.gene55817:CDS
GCAGCTAACTGATGGCTTGT+CGG 0.504655 4.3:-4400788 None:intergenic
TGAGGTCAAGGTTGAGAAAA+CGG 0.504688 4.3:+4398415 MS.gene55817:CDS
ATCTGTGAGGGTCGTAAGAT+GGG 0.506846 4.3:+4398722 MS.gene55817:CDS
CCTCGTATATCAAGCCGAAT+GGG 0.511380 4.3:+4402091 MS.gene55817:CDS
GATAGTACCTTGCCAGTGCC+CGG 0.512164 4.3:-4401227 None:intergenic
ATCCCAGAAGAGACTTCTGT+TGG 0.512492 4.3:+4399007 MS.gene55817:CDS
TCAAGACGAGATTTCGCAGC+TGG 0.512532 4.3:-4398107 None:intergenic
CGGAAACTAAGAAGAGAAAG+AGG 0.512657 4.3:+4398387 MS.gene55817:CDS
GATCTGTGAGGGTCGTAAGA+TGG 0.515072 4.3:+4398721 MS.gene55817:CDS
TTGAAGTCAGAAGTTGATGC+AGG 0.515204 4.3:+4401390 MS.gene55817:CDS
ATTTCTGACAATCAATGTCT+GGG 0.516051 4.3:+4401179 MS.gene55817:CDS
AGCTTGGAATGTGGCTTGGT+TGG 0.517458 4.3:-4401852 None:intergenic
CAAATATATCAATTCCATTG+AGG 0.517649 4.3:-4402177 None:intergenic
TGGAGCAAATGCAATTTCAT+CGG 0.518476 4.3:-4398234 None:intergenic
TACTGTTTCGTGGAGATCAA+TGG 0.518500 4.3:+4401426 MS.gene55817:CDS
GATCCTGATAATGTTGCTGC+AGG 0.521500 4.3:+4402439 MS.gene55817:CDS
TACAAGAAAGTTGTTTATGA+CGG 0.522606 4.3:+4398488 MS.gene55817:CDS
GCATTAAATGGACACAGGGT+TGG 0.523201 4.3:+4401582 MS.gene55817:CDS
AAAGAGGAAGAATGAGGTCA+AGG 0.524216 4.3:+4398403 MS.gene55817:CDS
GGTAAGGAATGAGGAGTGAG+AGG 0.524682 4.3:-4397966 None:intergenic
CAAACCTCTCATTTAGCAAA+CGG 0.525477 4.3:-4401620 None:intergenic
ATGGGGCAAAGCAAAGCCTC+TGG 0.529383 4.3:-4402117 None:intergenic
AGCGTTTGAAACTGTGCCAC+TGG 0.529464 4.3:-4400458 None:intergenic
TCAACATACTTATTTCTACA+AGG 0.530757 4.3:-4401039 None:intergenic
TTGAAGAAGAGAAATGGGAA+GGG 0.532289 4.3:+4398320 MS.gene55817:CDS
GCTCGTGCACCATAGCTGTC+AGG 0.532743 4.3:-4404388 None:intergenic
CGTGGATCTACGTGTAGGTA+AGG 0.533392 4.3:-4397982 None:intergenic
CTCGATGTTGGCCAAATCGT+TGG 0.533909 4.3:-4399068 None:intergenic
TGGATGGCAGCTACTGGTGT+CGG 0.533932 4.3:+4398969 MS.gene55817:CDS
ATCTGTAAAGAAGAGGAAGC+AGG 0.534383 4.3:+4398277 MS.gene55817:CDS
TCACTTGAATATGAGGTGCT+TGG 0.534848 4.3:-4403828 None:intergenic
CGAGCTTTACAAAACAGGAA+TGG 0.537464 4.3:+4404406 MS.gene55817:CDS
AATTAGCTTGGAATGTGGCT+TGG 0.540690 4.3:-4401856 None:intergenic
CGGTGTTCCGGGCACTGGCA+AGG 0.541081 4.3:+4401220 MS.gene55817:CDS
ATCCAGAAGTGGAGGAATGT+AGG 0.542570 4.3:+4398579 MS.gene55817:CDS
TAAATGGACACAGGGTTGGA+TGG 0.543748 4.3:+4401586 MS.gene55817:CDS
GTGAAGCAGGTGCCAAGCAC+AGG 0.543759 4.3:+4405147 MS.gene55817:CDS
AGTGTGATAGTTGTTTAGGT+GGG 0.547500 4.3:+4398636 MS.gene55817:CDS
CATGATATCCTCCTGCAAGT+TGG 0.553301 4.3:+4404879 MS.gene55817:CDS
CCGGAACACCGTGAATATAG+AGG 0.553353 4.3:-4401208 None:intergenic
CATCGAAATCTGTAAAGAAG+AGG 0.553381 4.3:+4398270 MS.gene55817:CDS
TCCTCGTATATCAAGCCGAA+TGG 0.555101 4.3:+4402090 MS.gene55817:CDS
TTCTTGGGAGTTGAAGCCAT+TGG 0.556223 4.3:-4397894 None:intergenic
GGGATGATGTTTATGTGAAG+AGG 0.559397 4.3:+4398528 MS.gene55817:CDS
TGCAGGAGGATATCATGTCC+AGG 0.562882 4.3:-4404873 None:intergenic
GAAGAGAAAGAGGAAGAATG+AGG 0.565359 4.3:+4398397 MS.gene55817:CDS
AACAATCAACTCCGAGAAGA+GGG 0.566074 4.3:+4398060 MS.gene55817:CDS
AGCTCTCTGCTCAAATTATG+TGG 0.566453 4.3:-4399037 None:intergenic
TTCATACTGCAGCTAACTGA+TGG 0.566543 4.3:-4400796 None:intergenic
ATTGAAGAAGAGAAATGGGA+AGG 0.568468 4.3:+4398319 MS.gene55817:CDS
TTGGATATGTGGGATCTGTG+AGG 0.570339 4.3:+4398709 MS.gene55817:CDS
ACAATCCATCACCTCGATGT+TGG 0.575437 4.3:-4399080 None:intergenic
CTCTCCGTTTGCTAAATGAG+AGG 0.575524 4.3:+4401616 MS.gene55817:CDS
TGTGGGCTGCTCGCATTGAG+AGG 0.577481 4.3:+4398825 MS.gene55817:CDS
AGGGAAGAAAACTGGAGAAG+AGG 0.577588 4.3:+4401647 MS.gene55817:CDS
TCCCAGAAGAGACTTCTGTT+GGG 0.577921 4.3:+4399008 MS.gene55817:CDS
AAGAAGTGGATGGCAGCTAC+TGG 0.578137 4.3:+4398963 MS.gene55817:CDS
GGGCTTTGAGAAATAACCTC+GGG 0.578651 4.3:-4405193 None:intergenic
CGTTGAAAGATGTTCCTGAA+GGG 0.581179 4.3:+4398684 MS.gene55817:CDS
TCCGATTGATCCGGCGACGT+CGG 0.582582 4.3:-4398368 None:intergenic
TATGCCAAAGCTAGCAATGA+GGG 0.585809 4.3:+4400399 MS.gene55817:CDS
TGAGAGGTGAGAATTGTGAA+CGG 0.585848 4.3:-4397950 None:intergenic
TTGCTATGTCATGATCCCTA+AGG 0.591823 4.3:+4400374 MS.gene55817:CDS
TTGTTAGAACAATGCGTCAG+AGG 0.591921 4.3:+4398786 MS.gene55817:CDS
CCGTTGAAAGATGTTCCTGA+AGG 0.592540 4.3:+4398683 MS.gene55817:CDS
CTGAAGGGGATTGGATATGT+GGG 0.593658 4.3:+4398699 MS.gene55817:CDS
ACACAGGGTTGGATGGAAAG+AGG 0.594099 4.3:+4401593 MS.gene55817:CDS
AGGAAAGGGACTTGTTTGCA+TGG 0.594820 4.3:+4403774 MS.gene55817:intron
ACAAGCTTCTTACCCTTCGG+CGG 0.596059 4.3:-4398767 None:intergenic
CAACAATCAACTCCGAGAAG+AGG 0.596926 4.3:+4398059 MS.gene55817:CDS
TAGCAGTATATGGAAAGAAG+TGG 0.597595 4.3:+4398949 MS.gene55817:intron
AAACGGTTGTTACAAGAGCT+GGG 0.597984 4.3:+4398432 MS.gene55817:CDS
GTTGAAAGATGTTCCTGAAG+GGG 0.598838 4.3:+4398685 MS.gene55817:CDS
ATGAAGCATTAAATGGACAC+AGG 0.600808 4.3:+4401577 MS.gene55817:CDS
TACAGAATCTGCACAAGGGA+CGG 0.603574 4.3:+4400896 MS.gene55817:intron
GCTGTAAGTTGGGTGAGTGT+AGG 0.604738 4.3:+4405114 MS.gene55817:intron
GACTAATCTTGAAAGAGCAA+AGG 0.606188 4.3:+4400981 MS.gene55817:CDS
TGGATATGTGGGATCTGTGA+GGG 0.607873 4.3:+4398710 MS.gene55817:CDS
TTCACCGGAGAATATTTACA+AGG 0.608665 4.3:+4401461 MS.gene55817:CDS
TTCAGGGATAGCAAATACAA+TGG 0.610395 4.3:+4402048 MS.gene55817:intron
AATTTCTGAAGAAGAGAAGT+CGG 0.611112 4.3:+4398201 MS.gene55817:CDS
CGGCGGTGAATTTGAAGTTG+GGG 0.617237 4.3:+4398508 MS.gene55817:CDS
CCTTCAGGAACATCTTTCAA+CGG 0.617438 4.3:-4398683 None:intergenic
AGAAGATGCTACTTCTGATG+AGG 0.621654 4.3:+4398553 MS.gene55817:CDS
ACAAGAGCTGGGAGAAAAGG+TGG 0.622286 4.3:+4398443 MS.gene55817:CDS
TCGTCAATGAGCAAAATACA+TGG 0.624876 4.3:-4401678 None:intergenic
TGAGGAAGATCCAGAAGTGG+AGG 0.628093 4.3:+4398571 MS.gene55817:CDS
GTATGCCAAAGCTAGCAATG+AGG 0.629062 4.3:+4400398 MS.gene55817:CDS
CTACGTGTAGGTAAGGAATG+AGG 0.635826 4.3:-4397975 None:intergenic
CAATGAGCAAAATACATGGT+CGG 0.635961 4.3:-4401674 None:intergenic
CCCATTCGGCTTGATATACG+AGG 0.638148 4.3:-4402091 None:intergenic
AGATTCGGCAACGAGGTTGG+GGG 0.640262 4.3:-4398030 None:intergenic
TGAAGCATTAAATGGACACA+GGG 0.640411 4.3:+4401578 MS.gene55817:CDS
AGTATCGGAGTTCAAGCGCG+TGG 0.641574 4.3:-4398000 None:intergenic
AAGCGCGTGGATCTACGTGT+AGG 0.642274 4.3:-4397987 None:intergenic
GCTACTGGTGTCGGGTACGG+TGG 0.642777 4.3:+4398978 MS.gene55817:CDS
GCTAACTGATGGCTTGTCGG+TGG 0.645325 4.3:-4400785 None:intergenic
TGATGAGGAAGATCCAGAAG+TGG 0.647235 4.3:+4398568 MS.gene55817:CDS
AGGGCTTTGAGAAATAACCT+CGG 0.647966 4.3:-4405194 None:intergenic
ATCACAATTAGCTTGGAATG+TGG 0.648587 4.3:-4401861 None:intergenic
AGTATATGGAAAGAAGTGGA+TGG 0.649668 4.3:+4398953 MS.gene55817:intron
TCATGACATAGCAATGTCGA+AGG 0.658256 4.3:-4400365 None:intergenic
AAGAAAGTTGTTTATGACGG+CGG 0.658330 4.3:+4398491 MS.gene55817:CDS
GAGATAACGACATTCATCAA+AGG 0.658884 4.3:+4401152 MS.gene55817:CDS
TGAGTGTACTCTCAGTGATG+AGG 0.663135 4.3:+4401364 MS.gene55817:CDS
TCTTGTAACCAGAAACCAGT+CGG 0.664804 4.3:+4401710 MS.gene55817:CDS
CGAAGACTGGAACATCGACA+AGG 0.665993 4.3:+4400694 MS.gene55817:CDS
AAGCTGCTGATAATTATATG+GGG 0.670932 4.3:-4402134 None:intergenic
GAGGTGAGAATTGTGAACGG+AGG 0.673704 4.3:-4397947 None:intergenic
TGACATTGATGATGAAAGAG+AGG 0.674539 4.3:+4400485 MS.gene55817:CDS
AGTCTTACCCAACTTGCAGG+AGG 0.676386 4.3:-4404887 None:intergenic
TCAGGAACATCTTTCAACGG+TGG 0.680289 4.3:-4398680 None:intergenic
GCTTTACAAAACAGGAATGG+GGG 0.682677 4.3:+4404409 MS.gene55817:CDS
AGCTTTACAAAACAGGAATG+GGG 0.683635 4.3:+4404408 MS.gene55817:CDS
AAAAGGTGGAAAGATTGCGA+AGG 0.684724 4.3:+4398457 MS.gene55817:CDS
AATGATACAGAATCTGCACA+AGG 0.686949 4.3:+4400891 MS.gene55817:intron
GTAAAGAAGAGGAAGCAGGA+AGG 0.690620 4.3:+4398281 MS.gene55817:CDS
AGTTGCAGCTCAATTTCCCG+AGG 0.692840 4.3:+4405177 MS.gene55817:CDS
TGAAGATGTTGAATATGATG+AGG 0.693036 4.3:+4400736 MS.gene55817:CDS
CAACGATTTGGCCAACATCG+AGG 0.693338 4.3:+4399069 MS.gene55817:CDS
TTTCTGACAATCAATGTCTG+GGG 0.698842 4.3:+4401180 MS.gene55817:CDS
CAAGCCGAATGGGCATCCAG+AGG 0.706358 4.3:+4402101 MS.gene55817:CDS
AATATGAATATGACATCCAG+TGG 0.707312 4.3:+4400442 MS.gene55817:CDS
ATGACGGTTTCATGTCTCTG+CGG 0.719836 4.3:+4404831 MS.gene55817:CDS
ATGATACAGAATCTGCACAA+GGG 0.728041 4.3:+4400892 MS.gene55817:intron
GAATTTGAGATTCGGCAACG+AGG 0.739754 4.3:-4398037 None:intergenic
TAGAATTCTGATGAGAGTGA+CGG 0.741239 4.3:+4400668 MS.gene55817:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr4.3 gene 4397897 4405256 4397897 ID=MS.gene55817
chr4.3 mRNA 4397897 4405256 4397897 ID=MS.gene55817.t1;Parent=MS.gene55817
chr4.3 exon 4397897 4398846 4397897 ID=MS.gene55817.t1.exon1;Parent=MS.gene55817.t1
chr4.3 CDS 4397897 4398846 4397897 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4398955 4399090 4398955 ID=MS.gene55817.t1.exon2;Parent=MS.gene55817.t1
chr4.3 CDS 4398955 4399090 4398955 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4400354 4400506 4400354 ID=MS.gene55817.t1.exon3;Parent=MS.gene55817.t1
chr4.3 CDS 4400354 4400506 4400354 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4400671 4400811 4400671 ID=MS.gene55817.t1.exon4;Parent=MS.gene55817.t1
chr4.3 CDS 4400671 4400811 4400671 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4400901 4401052 4400901 ID=MS.gene55817.t1.exon5;Parent=MS.gene55817.t1
chr4.3 CDS 4400901 4401052 4400901 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4401142 4401241 4401142 ID=MS.gene55817.t1.exon6;Parent=MS.gene55817.t1
chr4.3 CDS 4401142 4401241 4401142 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4401360 4401482 4401360 ID=MS.gene55817.t1.exon7;Parent=MS.gene55817.t1
chr4.3 CDS 4401360 4401482 4401360 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4401570 4401731 4401570 ID=MS.gene55817.t1.exon8;Parent=MS.gene55817.t1
chr4.3 CDS 4401570 4401731 4401570 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4401828 4401885 4401828 ID=MS.gene55817.t1.exon9;Parent=MS.gene55817.t1
chr4.3 CDS 4401828 4401885 4401828 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4402053 4402243 4402053 ID=MS.gene55817.t1.exon10;Parent=MS.gene55817.t1
chr4.3 CDS 4402053 4402243 4402053 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4402346 4402460 4402346 ID=MS.gene55817.t1.exon11;Parent=MS.gene55817.t1
chr4.3 CDS 4402346 4402460 4402346 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4403776 4403846 4403776 ID=MS.gene55817.t1.exon12;Parent=MS.gene55817.t1
chr4.3 CDS 4403776 4403846 4403776 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4404353 4404448 4404353 ID=MS.gene55817.t1.exon13;Parent=MS.gene55817.t1
chr4.3 CDS 4404353 4404448 4404353 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4404825 4404901 4404825 ID=MS.gene55817.t1.exon14;Parent=MS.gene55817.t1
chr4.3 CDS 4404825 4404901 4404825 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
chr4.3 exon 4405115 4405256 4405115 ID=MS.gene55817.t1.exon15;Parent=MS.gene55817.t1
chr4.3 CDS 4405115 4405256 4405115 ID=cds.MS.gene55817.t1;Parent=MS.gene55817.t1
Gene Sequence

>MS.gene55817

ATGGCTTCAACTCCCAAGAAGCTTCTTCAATCTCCCTCCTCAAAATCCAACCTCCGTTCACAATTCTCACCTCTCACTCCTCATTCCTTACCTACACGTAGATCCACGCGCTTGAACTCCGATACTCCCATAACCCCCAACCTCGTTGCCGAATCTCAAATTCAACAATCAACTCCGAGAAGAGGGAGAAGAATCGGTGAGAATTCTGTTCCAGCTGCGAAATCTCGTCTTGATTTCACTCGAAAAGATAAAGCTGTAACTCACAATAGTTCAATTAAAGTAGAAAATGAAATTGATTCTGCTCAATTTCTGAAGAAGAGAAGTCGGAAAGCTGAATCCGATGAAATTGCATTTGCTCCAAAATCGCCAGATTCATCGAAATCTGTAAAGAAGAGGAAGCAGGAAGGTGAAAAAACGGCTGAATTGAAGAAGAGAAATGGGAAGGGAGATTCCCTTAAGGTTTGGTTCGCTCCGACGTCGCCGGATCAATCGGAAACTAAGAAGAGAAAGAGGAAGAATGAGGTCAAGGTTGAGAAAACGGTTGTTACAAGAGCTGGGAGAAAAGGTGGAAAGATTGCGAAGGTGCAGTATTACAAGAAAGTTGTTTATGACGGCGGTGAATTTGAAGTTGGGGATGATGTTTATGTGAAGAGGAGAGAAGATGCTACTTCTGATGAGGAAGATCCAGAAGTGGAGGAATGTAGGTTTTGTTTTCGTTCTGGGGACGAAATCATGATTGAGTGTGATAGTTGTTTAGGTGGGTTTCATTTGAAATGTTTGACACCACCGTTGAAAGATGTTCCTGAAGGGGATTGGATATGTGGGATCTGTGAGGGTCGTAAGATGGGTAAAGATGTTGATTTTCCAAAGCCGCCGAAGGGTAAGAAGCTTGTTAGAACAATGCGTCAGAGGCTTCAATCAAGTGATTTGTGGGCTGCTCGCATTGAGAGGTATGCTATATCCTTTATATATCAATTATATTATTTTATGTTTTTTAATAATAATTATTTGTACGCCAATTATGCGGTTTATTTACATCATTAGTTCAATGTTAGCAGTATATGGAAAGAAGTGGATGGCAGCTACTGGTGTCGGGTACGGTGGTATATGATCCCAGAAGAGACTTCTGTTGGGCGACAACCACATAATTTGAGCAGAGAGCTATATCGGACCAACGATTTGGCCAACATCGAGGTGATGGATTGTTAATGATTTGGTTGTGGTATACTATATTAGAAAGGTGGTTAGTATGAATGGAAGTTGTCCTAGTTGTACTTCCAATCTATCAAAGAGCATATTGAATTTAGCATGTTTAGTGACAATCCTTGATAACTTTGGAACATCTAGATGGCTTGAGTTTTCTCCTCCACAGTGCATACTCAATTAAAGTCTGTCTGAATCTTACTCTGGAAAAGAGTACTCGTGGTATCTAGATGTACCAAGAAATAATAGAACTATAGTTTAATTGAGTAGATAATAGCTGTCGTCAATTATGGACTGATTGCTTACTTTGATAGATTGATTGCATTCTTGATTAGTTTAGCTTAGCATTTCTACGATCACGTCTCTACTTACAGGTCAACTTTTATACGCCTTAATGGCTCTTATCAAACTTTAGCATCCTTGGGCTGGTTGACTTGTTTATGCTGATAACTTCGATTATATTATGCAATGTCATACCCATATTAATTTAAATAGTTGGAGAAGTAGTTCAACTATTAAGTTCTACTGTGCTTCTGATTATTCGTTTCCTTCTTTTTGCATTCAATTTAATCAAATACAGTAAAAAAAGGGGACTAGAGTTATAATAATGAAATAGCTTGTGTATATAACACTTGTATTACTAAATGAAATAGAAAACTCCATCCTAAAATGTTGGAAATACATTGAAATTTATCCTTGAATATTGACAAGCTCACATTCGTCTTCTTTAGAAGAAGGAAATGGCATCTTCCGGAAACCTTAGAATTGGTTTTTATCTATTCTTGGAAGATGCCACTCATTATCTCCGGTAAAGGGGGTTTTATGAAGAGTTGAGAGAAGCCCAAAAAATGTGAGTGAATCTTTAGGTAAATGTTAAGTATCACTTCTGTAGTGATTATCATTCCATGTAACTTTTGAGTAGGATATCGCAGCTTGTAGGACGAGTCATGATGCACAACTAGTGGAGGGTTTTCCAAATTTGATAGAATTTGTGATCTATTATTGAGATAATAACAATTTTGTTGAAATGTTTATGTGTGTAGGCAAGAGGTGCCAAAAAATGTAAATTATGTTGCTTTTATGTGTGTTTTCATCTTCGATCCTTAGTGCGTGTAATTTTTCCCCATCATTAAAATTGAGCATAACTTGTGGTGCTGTATTATTTGTATTTCTATAGTCTCGTTTTTTAATGTTCAGGGTAATCAGAACTCATTCTCCTTTTTTCTCATCGTGGTGCTTCTCTGTTCAATATAGATGGAATCTGTCCTTCGACATTGCTATGTCATGATCCCTAAGGAGTATGCCAAAGCTAGCAATGAGGGAGATGATGTTTTCTTGTGTGAATATGAATATGACATCCAGTGGCACAGTTTCAAACGCTTGGCTGACATTGATGATGAAAGAGAGGTAACCGTCTTATAAAATATGTACAAGGACCATTCTTCTCATAAAAGAGTTAACCATTTAGCAGTGGTAATATTGACGACTTTATACAGATACACAGTTGAATGGTGATGAGACTGATTATTTAGCTGTGCTAGTACTGATGACTGTATATTTTTACATGGTAGAATTCTGATGAGAGTGACGGTGACGAAGACTGGAACATCGACAAGGAATCAGACTCTGACACAGATGAAGATGTTGAATATGATGAGGAAAATATTAAAATTTCACAATCACAACCACCGACAAGCCATCAGTTAGCTGCAGTATGAACATTATTGTTCACTTGTATTAATTTGTATTATTTTTTGTGTTTATGAGTTCCTATGAAATTTTTGTTGTGTAAATGATACAGAATCTGCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGCACAAAAAGAATTCCAGAGCATATAAGGTCTCACAAACAGACTAATCTTGAAAGAGCAAAGGCATCACTGCTGTTAGCTTCGCTGCCTAAGTCTTTACCTTGTAGAAATAAGTATGTTGAAGTTTAACATGGTTTTTTAACATTTCATTTATCTATCCATGTTAAGCGACTATTACTAATCAAAACATGCTTTTATTTAGAGAAATGGACGAGATAACGACATTCATCAAAGGTGCTATTTCTGACAATCAATGTCTGGGGCGTTGCCTCTATATTCACGGTGTTCCGGGCACTGGCAAGGTACTATCTTCTAGAACTAGCTACATTGCTTGTTGGTCTAATATCCAGCAGAACTTTAGTTTAGATATCACGGAGCAATTCTTATTATATTACTCCTTTTTTATGTGTGTAACTGCAGACAATGAGTGTACTCTCAGTGATGAGGAGTTTGAAGTCAGAAGTTGATGCAGGAAACATCAAACCATACTGTTTCGTGGAGATCAATGGTCTGAAATTGGCTTCACCGGAGAATATTTACAAGGTGAAGTTCACAAATCTTTTACCGTTTTTGGTTTTATGACCAAATTCCTTGGTTGCCTTATGGTTCCGACTTCCAATACTATTTTAGGTCATATATGAAGCATTAAATGGACACAGGGTTGGATGGAAAGAGGCTCTCCGTTTGCTAAATGAGAGGTTTGTAGAAGGGAAGAAAACTGGAGAAGAGGCTGACCGACCATGTATTTTGCTCATTGACGAACTTGATCTTCTTGTAACCAGAAACCAGTCGGTAACTAACAAATCCTGTTGCAAGAAACTTGTCATTAGGTGTCCACGTTATTTATTATATGAAACAAGATTGGCTATAACTTTCCTTTTATCACAGGTTCTGTACAATATTCTTGACTGGCCAACCAAGCCACATTCCAAGCTAATTGTGATAGGTAAGATTTAAGCTCTTGTGAATTATATTTATAGAATTGTGATCTTCTAGCTAAACAGATGTAATATCAAATACTGGGATCACAAGAATTCATATGATTATAATAAGAACTACAATGCCTTTGTGGACAACAAAAACTTAATTTTTGTAATAATGTACTGAATTCAGGGATAGCAAATACAATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATCCAGAGGCTTTGCTTTGCCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCGAGTCGCCTCAATGGAATTGATATATTTGAAAAACAAGCTATGGAATTTGCTTCAAGAAAGTTTAGTCTCCAAGTCTTTTGAAGATTGGTTTCCTTTACCATTTTATGCACACGGGCACTTCTTTTGGTACAATAGCTTGTTGATTTACATCTGACATGATCTTTATTTCTTCAGGTTGCAGCTATATCAGGAGATGCACGTCGTGCTTTGGAAATATGCAGACGTGCAGCTGAAATTGCAGATTATCGAATGAAGAAGCTAGCTTCAGATCCTGATAATGTTGCTGCAGGTATAGTCAAAACCCATAGATTTTACGTGTCATCATAGGAGATAGAGGGATCACATGATGTTTCCTATTTCACATGTTGCCAATTAGTTACATGTGCCTTCACAAAAGTCTCATTTGTTTTTACACATTTGTAAACAATATGTGGATATAATAACCTAACAATAACCAAGTCAGATAAATCTTCACCCACATAAACAACTAGATTACTTGAGAACAAAACAATACGCATTATTACAAAATTTATTGGATTTCAGGATCCAAGACCAAACTTCAGATTTTAATGTATTGTTTCATCTACAATATGCTTGATGCCCGATAATGTAAATCTAGTGTTCTCATTAATAATTATGCGGGTGCATCAGTATAATGAATTCTCCATTACATTGGTGTAATTTTATTAAAAGAAAAACATCGGTGTAATTTGATCCCTCTTCATAATCAATATAAGGTTAGTAGTCATATCACATAACTTGTATCTCAAACTGATTATGATGTAAAATATTTTAACAATTAATCAAATTATTTGTGTTAATAAGTTGATCAAATCTATTGGCAAGTGCCAACCACTAAGTTGTTTTCTTCAAGCACATAAATTATATAATCAGTAAACAAAAGTTCATGAATCATGGTATAAACTAAATAACCCAAATTATATAGTTATCATCTATCATAACCTCTACCTTTAGATGGTCTTGCTGATCCTTCAATGAATTACCATCAATTGACTCAAATTCCTGCCAGACTGAACTCTAGTCTGAAACTGATACCTACATTACCAAAATTGGAAATTGGGCCTCTTGAGTGTGCACGGCTACACCTGATTTCCCCAAGAGTTGCTTCACATTTAGCCATATATCTATAACTTCAGGAGGCAATTACATGTATCATATCAATGAATTGAAAACACACCTGCTGCTCCACAATAATTTTGTTGAAACTACCAGCATCAGTATCTCCAAAAAGAGTCTGTTACATTACCATGAGATTATGATAAACATGTCAACCATATTTTTTTGTCCACTTCCATATTTGTTATTCCGTTGTTACCTATGTGTGAAGGCTTGGTATTCAATGAGTTGGATCCAAATATGGTTTTTGATAGAACACTATGGCGTCATTTGATCCATGTAGCCGACCCCACATAGTGGGATAAGGCTTGGTTGTTGTTGTTGTTGTTGTATTTCATCCTTTTTCTTCTATAGTGGAATGTTTTCGCATGTTAACCTAAAATGCAGTCAGCATCACTTGTATGCACTGATACTTTATGTCTGAGGTAGTGTTTGAGCCCACTAATTCATTTGCATCTGCTCTCCAGGAAAGGGACTTGTTTGCATGGCAGACGTTGAATCAGCTATTCAAGAAATGTTCCAAGCACCTCATATTCAAGTGAGTTGAAATTTGCAGTGTGTGGATTTTTTTCCTTGACATTTCAAATATTTTTTTCCCCAAATGTTATAAGATTCCTAAGCAGCAGTCTTGACTGTGAACCAAGTCATGAGATGTAAAGTTATTAAATATACAATTAATACAAATGTTTCTGATGTAACTGAGATATCCACTTTTTTAAAAAGCAAAATGAGTGGTTTCTTTAACTGAGTATTATACCATGAACGAAGACTTTATGCTGTTTTATATGGCGCTGGCATTAGGTAATTAAGAAATAACTCACGCGCTATTTTAGTTTATCAGATGTGACTGCTAGTCTTGTGGACCAGCGATCATAGGGCATAGGAAATTAATGTTTTCCTTTATCTTTAAGCCAGTTTTTTCTTGCGAATTTCATGAAATTACTTGAGGCAGGGTGATAAGCACTTTTATATATTCATTTAGCTGGCAGACTGACAGCATTTTATTTCAGTCTTACATCACATGCACCTTTTTTCGTTTTGAAGGTGATGAAAAACTGTTCCAGACTTGGCAAAATTTTCCTGACAGCTATGGTGCACGAGCTTTACAAAACAGGAATGGGGGAAACCACTTTTGAAAAGGTATGCTTCAGAAGCTTCTTTCTGTTGTTAACTTATTTTATTCTCGCTTGACATTCAGCATAAATTTTTCCACCTTAAAATTGAAGAGGTGAAATATGCTTACAACCTTCGTCCTCAGCTCTTTTTCAGTTTAATAGCATTATGTAAGTTTTTTATGTTGCATGTGACTCAAAATATATCAAATTACTTTTTTTTTTTGAAGCATAATATATCAAATTTTTTTTTTATTTATTTTAAGGATAATATATCAAATTTCTTGGTGAACTTAGATGTGTTATATCCTGGTGTTGACTTTCTAGTAGAAAAGGCATTGGTTAGAAGCTTAACGTTAATTTGTTTAAGTGCTCTTATGTAAGGTTTCATTTTAACAATGCAGTTGGCAATGACGGTTTCATGTCTCTGCGGCAGCAATGGTGAAGTGTTTCCTGGACATGATATCCTCCTGCAAGTTGGGTAAGACTTATGTTTGTTTCTTACATGTTTCTGCGTTGAAGTGGCCTGGAAGGGAGAACCGGGGGGTGGTGGTGGTGGGGGGGGGGGGGGGGGGGGGGGGGTCTTGCTTTATACTCAAACACAAGTAACAGACTGTTTAACTGCTAAGTGTACGAGATCCATCCTAGTTGCATGTCTATTTTATCTAATAAGCCCTTCTTCCATTTTTTGCAGCTGTAAGTTGGGTGAGTGTAGGATCATTTTGTGTGAAGCAGGTGCCAAGCACAGGTTGCAAAAGTTGCAGCTCAATTTCCCGAGGTTATTTCTCAAAGCCCTTATTACTTCTTCAGCTGCCATTAATGATGCAAACCGATGA

Protein sequence

>MS.gene55817.t1

MASTPKKLLQSPSSKSNLRSQFSPLTPHSLPTRRSTRLNSDTPITPNLVAESQIQQSTPRRGRRIGENSVPAAKSRLDFTRKDKAVTHNSSIKVENEIDSAQFLKKRSRKAESDEIAFAPKSPDSSKSVKKRKQEGEKTAELKKRNGKGDSLKVWFAPTSPDQSETKKRKRKNEVKVEKTVVTRAGRKGGKIAKVQYYKKVVYDGGEFEVGDDVYVKRREDATSDEEDPEVEECRFCFRSGDEIMIECDSCLGGFHLKCLTPPLKDVPEGDWICGICEGRKMGKDVDFPKPPKGKKLVRTMRQRLQSSDLWAARIESIWKEVDGSYWCRVRWYMIPEETSVGRQPHNLSRELYRTNDLANIEMESVLRHCYVMIPKEYAKASNEGDDVFLCEYEYDIQWHSFKRLADIDDERENSDESDGDEDWNIDKESDSDTDEDVEYDEENIKISQSQPPTSHQLAANLHKGRFFGLQKIGTKRIPEHIRSHKQTNLERAKASLLLASLPKSLPCRNKEMDEITTFIKGAISDNQCLGRCLYIHGVPGTGKTMSVLSVMRSLKSEVDAGNIKPYCFVEINGLKLASPENIYKVIYEALNGHRVGWKEALRLLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFAPYNYQQLQEIISSRLNGIDIFEKQAMEFASRKFSLQVAAISGDARRALEICRRAAEIADYRMKKLASDPDNVAAGKGLVCMADVESAIQEMFQAPHIQVMKNCSRLGKIFLTAMVHELYKTGMGETTFEKLAMTVSCLCGSNGEVFPGHDILLQVGCKLGECRIILCEAGAKHRLQKLQLNFPRLFLKALITSSAAINDANR