Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69459.t1 | XP_013462162.1 | 96.1 | 466 | 18 | 0 | 1 | 466 | 1 | 466 | 1.60E-251 | 878.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69459.t1 | Q81ST7 | 32.8 | 134 | 86 | 2 | 328 | 461 | 245 | 374 | 5.3e-09 | 63.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69459.t1 | A0A072V2W7 | 96.1 | 466 | 18 | 0 | 1 | 466 | 1 | 466 | 1.2e-251 | 878.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene69459 | 0.861202 | 1.21E-63 | -1.69E-46 |
MS.gene049190 | MS.gene69459 | 0.846407 | 2.22E-59 | -1.69E-46 |
MS.gene049254 | MS.gene69459 | 0.835818 | 1.34E-56 | -1.69E-46 |
MS.gene049350 | MS.gene69459 | 0.826977 | 2.02E-54 | -1.69E-46 |
MS.gene049404 | MS.gene69459 | 0.808908 | 2.46E-50 | -1.69E-46 |
MS.gene049501 | MS.gene69459 | 0.805951 | 1.04E-49 | -1.69E-46 |
MS.gene049672 | MS.gene69459 | 0.804568 | 2.03E-49 | -1.69E-46 |
MS.gene049711 | MS.gene69459 | 0.862878 | 3.71E-64 | -1.69E-46 |
MS.gene049744 | MS.gene69459 | 0.805275 | 1.44E-49 | -1.69E-46 |
MS.gene049807 | MS.gene69459 | 0.851725 | 7.36E-61 | -1.69E-46 |
MS.gene049824 | MS.gene69459 | 0.806881 | 6.63E-50 | -1.69E-46 |
MS.gene049850 | MS.gene69459 | 0.807351 | 5.27E-50 | -1.69E-46 |
MS.gene050241 | MS.gene69459 | 0.813006 | 3.18E-51 | -1.69E-46 |
MS.gene05045 | MS.gene69459 | 0.817107 | 3.91E-52 | -1.69E-46 |
MS.gene050559 | MS.gene69459 | 0.806161 | 9.41E-50 | -1.69E-46 |
MS.gene050561 | MS.gene69459 | 0.806901 | 6.57E-50 | -1.69E-46 |
MS.gene050901 | MS.gene69459 | 0.848116 | 7.52E-60 | -1.69E-46 |
MS.gene051018 | MS.gene69459 | 0.822631 | 2.14E-53 | -1.69E-46 |
MS.gene051021 | MS.gene69459 | 0.810102 | 1.36E-50 | -1.69E-46 |
MS.gene051029 | MS.gene69459 | 0.808479 | 3.04E-50 | -1.69E-46 |
MS.gene051247 | MS.gene69459 | 0.863094 | 3.18E-64 | -1.69E-46 |
MS.gene051279 | MS.gene69459 | 0.854622 | 1.09E-61 | -1.69E-46 |
MS.gene051388 | MS.gene69459 | 0.827947 | 1.18E-54 | -1.69E-46 |
MS.gene05157 | MS.gene69459 | 0.821158 | 4.69E-53 | -1.69E-46 |
MS.gene051594 | MS.gene69459 | 0.803566 | 3.28E-49 | -1.69E-46 |
MS.gene051664 | MS.gene69459 | 0.825351 | 4.92E-54 | -1.69E-46 |
MS.gene051700 | MS.gene69459 | 0.814946 | 1.19E-51 | -1.69E-46 |
MS.gene051719 | MS.gene69459 | 0.849826 | 2.52E-60 | -1.69E-46 |
MS.gene051720 | MS.gene69459 | 0.872271 | 3.62E-67 | -1.69E-46 |
MS.gene051744 | MS.gene69459 | 0.894087 | 3.43E-75 | -1.69E-46 |
MS.gene052000 | MS.gene69459 | 0.804079 | 2.57E-49 | -1.69E-46 |
MS.gene052168 | MS.gene69459 | 0.8125 | 4.11E-51 | -1.69E-46 |
MS.gene052307 | MS.gene69459 | 0.820039 | 8.47E-53 | -1.69E-46 |
MS.gene052311 | MS.gene69459 | 0.82385 | 1.11E-53 | -1.69E-46 |
MS.gene052463 | MS.gene69459 | 0.802319 | 5.94E-49 | -1.69E-46 |
MS.gene052516 | MS.gene69459 | 0.827492 | 1.52E-54 | -1.69E-46 |
MS.gene052519 | MS.gene69459 | 0.822682 | 2.08E-53 | -1.69E-46 |
MS.gene052582 | MS.gene69459 | 0.816891 | 4.38E-52 | -1.69E-46 |
MS.gene052584 | MS.gene69459 | 0.82637 | 2.82E-54 | -1.69E-46 |
MS.gene052609 | MS.gene69459 | 0.831213 | 1.90E-55 | -1.69E-46 |
MS.gene052611 | MS.gene69459 | 0.808346 | 3.24E-50 | -1.69E-46 |
MS.gene052665 | MS.gene69459 | 0.808356 | 3.22E-50 | -1.69E-46 |
MS.gene052732 | MS.gene69459 | 0.805454 | 1.32E-49 | -1.69E-46 |
MS.gene052773 | MS.gene69459 | 0.852783 | 3.68E-61 | -1.69E-46 |
MS.gene052863 | MS.gene69459 | 0.805064 | 1.60E-49 | -1.69E-46 |
MS.gene053079 | MS.gene69459 | 0.849099 | 4.02E-60 | -1.69E-46 |
MS.gene053122 | MS.gene69459 | 0.838591 | 2.63E-57 | -1.69E-46 |
MS.gene053144 | MS.gene69459 | 0.885973 | 5.12E-72 | -1.69E-46 |
MS.gene053226 | MS.gene69459 | 0.856348 | 3.42E-62 | -1.69E-46 |
MS.gene053536 | MS.gene69459 | 0.830467 | 2.89E-55 | -1.69E-46 |
MS.gene053538 | MS.gene69459 | 0.833218 | 6.05E-56 | -1.69E-46 |
MS.gene053581 | MS.gene69459 | 0.810415 | 1.17E-50 | -1.69E-46 |
MS.gene053597 | MS.gene69459 | 0.807942 | 3.95E-50 | -1.69E-46 |
MS.gene053599 | MS.gene69459 | 0.850568 | 1.56E-60 | -1.69E-46 |
MS.gene053621 | MS.gene69459 | 0.811015 | 8.65E-51 | -1.69E-46 |
MS.gene05364 | MS.gene69459 | 0.816286 | 5.98E-52 | -1.69E-46 |
MS.gene054142 | MS.gene69459 | 0.802844 | 4.63E-49 | -1.69E-46 |
MS.gene05423 | MS.gene69459 | 0.812643 | 3.82E-51 | -1.69E-46 |
MS.gene054576 | MS.gene69459 | 0.824307 | 8.66E-54 | -1.69E-46 |
MS.gene054584 | MS.gene69459 | 0.884365 | 2.04E-71 | -1.69E-46 |
MS.gene054651 | MS.gene69459 | 0.843612 | 1.26E-58 | -1.69E-46 |
MS.gene054775 | MS.gene69459 | 0.822742 | 2.01E-53 | -1.69E-46 |
MS.gene054824 | MS.gene69459 | 0.817652 | 2.95E-52 | -1.69E-46 |
MS.gene054943 | MS.gene69459 | 0.803609 | 3.21E-49 | -1.69E-46 |
MS.gene054991 | MS.gene69459 | 0.816742 | 4.73E-52 | -1.69E-46 |
MS.gene055083 | MS.gene69459 | 0.805403 | 1.36E-49 | -1.69E-46 |
MS.gene055144 | MS.gene69459 | 0.810312 | 1.23E-50 | -1.69E-46 |
MS.gene055465 | MS.gene69459 | 0.866131 | 3.57E-65 | -1.69E-46 |
MS.gene055466 | MS.gene69459 | 0.857074 | 2.09E-62 | -1.69E-46 |
MS.gene055468 | MS.gene69459 | 0.840352 | 9.16E-58 | -1.69E-46 |
MS.gene055469 | MS.gene69459 | 0.825589 | 4.32E-54 | -1.69E-46 |
MS.gene055512 | MS.gene69459 | 0.806149 | 9.46E-50 | -1.69E-46 |
MS.gene055513 | MS.gene69459 | 0.846771 | 1.76E-59 | -1.69E-46 |
MS.gene055537 | MS.gene69459 | 0.876349 | 1.50E-68 | -1.69E-46 |
MS.gene055580 | MS.gene69459 | -0.862952 | 3.52E-64 | -1.69E-46 |
MS.gene055764 | MS.gene69459 | 0.801518 | 8.67E-49 | -1.69E-46 |
MS.gene055818 | MS.gene69459 | 0.810335 | 1.21E-50 | -1.69E-46 |
MS.gene055890 | MS.gene69459 | 0.82356 | 1.30E-53 | -1.69E-46 |
MS.gene055891 | MS.gene69459 | 0.820956 | 5.21E-53 | -1.69E-46 |
MS.gene056005 | MS.gene69459 | 0.812227 | 4.71E-51 | -1.69E-46 |
MS.gene056043 | MS.gene69459 | -0.832569 | 8.77E-56 | -1.69E-46 |
MS.gene056050 | MS.gene69459 | 0.864896 | 8.74E-65 | -1.69E-46 |
MS.gene056169 | MS.gene69459 | 0.810904 | 9.14E-51 | -1.69E-46 |
MS.gene056308 | MS.gene69459 | 0.871296 | 7.62E-67 | -1.69E-46 |
MS.gene056366 | MS.gene69459 | 0.846782 | 1.75E-59 | -1.69E-46 |
MS.gene056507 | MS.gene69459 | 0.846029 | 2.81E-59 | -1.69E-46 |
MS.gene056553 | MS.gene69459 | 0.819789 | 9.66E-53 | -1.69E-46 |
MS.gene056595 | MS.gene69459 | 0.820877 | 5.44E-53 | -1.69E-46 |
MS.gene05686 | MS.gene69459 | 0.821656 | 3.60E-53 | -1.69E-46 |
MS.gene057034 | MS.gene69459 | 0.819502 | 1.12E-52 | -1.69E-46 |
MS.gene057082 | MS.gene69459 | 0.809389 | 1.94E-50 | -1.69E-46 |
MS.gene057132 | MS.gene69459 | 0.808234 | 3.42E-50 | -1.69E-46 |
MS.gene057294 | MS.gene69459 | 0.808396 | 3.16E-50 | -1.69E-46 |
MS.gene057444 | MS.gene69459 | 0.826237 | 3.03E-54 | -1.69E-46 |
MS.gene057915 | MS.gene69459 | 0.803185 | 3.93E-49 | -1.69E-46 |
MS.gene058010 | MS.gene69459 | 0.807635 | 4.59E-50 | -1.69E-46 |
MS.gene058087 | MS.gene69459 | 0.801243 | 9.87E-49 | -1.69E-46 |
MS.gene058339 | MS.gene69459 | 0.801019 | 1.10E-48 | -1.69E-46 |
MS.gene05847 | MS.gene69459 | 0.804 | 2.66E-49 | -1.69E-46 |
MS.gene058625 | MS.gene69459 | 0.828425 | 9.05E-55 | -1.69E-46 |
MS.gene058636 | MS.gene69459 | 0.807435 | 5.06E-50 | -1.69E-46 |
MS.gene058649 | MS.gene69459 | 0.826668 | 2.39E-54 | -1.69E-46 |
MS.gene058668 | MS.gene69459 | 0.847344 | 1.23E-59 | -1.69E-46 |
MS.gene058852 | MS.gene69459 | 0.817759 | 2.79E-52 | -1.69E-46 |
MS.gene05894 | MS.gene69459 | 0.85845 | 8.17E-63 | -1.69E-46 |
MS.gene058979 | MS.gene69459 | 0.800268 | 1.56E-48 | -1.69E-46 |
MS.gene059015 | MS.gene69459 | 0.840733 | 7.28E-58 | -1.69E-46 |
MS.gene059084 | MS.gene69459 | 0.819554 | 1.09E-52 | -1.69E-46 |
MS.gene059154 | MS.gene69459 | 0.831834 | 1.33E-55 | -1.69E-46 |
MS.gene059424 | MS.gene69459 | 0.827101 | 1.88E-54 | -1.69E-46 |
MS.gene059570 | MS.gene69459 | 0.866451 | 2.82E-65 | -1.69E-46 |
MS.gene059625 | MS.gene69459 | 0.871836 | 5.04E-67 | -1.69E-46 |
MS.gene059725 | MS.gene69459 | 0.819263 | 1.27E-52 | -1.69E-46 |
MS.gene059965 | MS.gene69459 | 0.800575 | 1.35E-48 | -1.69E-46 |
MS.gene060355 | MS.gene69459 | 0.827723 | 1.34E-54 | -1.69E-46 |
MS.gene060365 | MS.gene69459 | 0.801205 | 1.00E-48 | -1.69E-46 |
MS.gene060519 | MS.gene69459 | 0.845472 | 3.98E-59 | -1.69E-46 |
MS.gene060587 | MS.gene69459 | 0.838238 | 3.24E-57 | -1.69E-46 |
MS.gene060603 | MS.gene69459 | 0.81821 | 2.21E-52 | -1.69E-46 |
MS.gene06094 | MS.gene69459 | 0.800207 | 1.61E-48 | -1.69E-46 |
MS.gene061100 | MS.gene69459 | 0.813685 | 2.26E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69459.t1 | MTR_3g112280 | 96.137 | 466 | 18 | 0 | 1 | 466 | 1 | 466 | 0.0 | 923 |
MS.gene69459.t1 | MTR_3g112280 | 96.094 | 384 | 15 | 0 | 1 | 384 | 1 | 384 | 0.0 | 761 |
MS.gene69459.t1 | MTR_4g011910 | 29.372 | 446 | 238 | 10 | 72 | 456 | 224 | 653 | 1.35e-41 | 157 |
MS.gene69459.t1 | MTR_4g069840 | 28.698 | 453 | 246 | 11 | 72 | 461 | 194 | 632 | 3.64e-39 | 150 |
MS.gene69459.t1 | MTR_3g112270 | 44.706 | 170 | 44 | 5 | 283 | 451 | 34 | 154 | 2.65e-30 | 115 |
MS.gene69459.t1 | MTR_2g102283 | 46.610 | 118 | 62 | 1 | 345 | 461 | 592 | 709 | 5.97e-22 | 99.8 |
MS.gene69459.t1 | MTR_2g102283 | 29.924 | 264 | 140 | 11 | 68 | 303 | 248 | 494 | 5.31e-19 | 90.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69459.t1 | AT1G75420 | 76.149 | 457 | 104 | 3 | 8 | 464 | 7 | 458 | 0.0 | 675 |
MS.gene69459.t1 | AT1G75420 | 78.505 | 428 | 88 | 2 | 37 | 464 | 9 | 432 | 0.0 | 650 |
MS.gene69459.t1 | AT1G19710 | 73.404 | 470 | 118 | 4 | 1 | 464 | 1 | 469 | 0.0 | 647 |
MS.gene69459.t1 | AT1G75420 | 81.769 | 373 | 68 | 0 | 92 | 464 | 1 | 373 | 0.0 | 634 |
MS.gene69459.t1 | AT1G52420 | 29.801 | 453 | 250 | 11 | 68 | 461 | 226 | 669 | 2.20e-44 | 165 |
MS.gene69459.t1 | AT3G15940 | 28.690 | 481 | 244 | 13 | 68 | 461 | 228 | 696 | 6.47e-38 | 147 |
MS.gene69459.t1 | AT3G15940 | 28.690 | 481 | 244 | 13 | 68 | 461 | 228 | 696 | 6.47e-38 | 147 |
Find 111 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCACATAACATTGTGAAAT+TGG | 0.197530 | 3.3:-92572812 | MS.gene69459:CDS |
ACGAAATGCCATTGCTTCTA+TGG | 0.222266 | 3.3:+92574146 | None:intergenic |
TCGCACGAACTATCTCTTTC+TGG | 0.222877 | 3.3:-92576698 | MS.gene69459:CDS |
GTGGCTGGATGCCGTCTTAA+AGG | 0.261650 | 3.3:-92575472 | MS.gene69459:CDS |
GGGTTCTTCGTGAGCATGTT+AGG | 0.272900 | 3.3:-92575098 | MS.gene69459:CDS |
AATAGGACCAGGGAGAGTTT+AGG | 0.282610 | 3.3:-92575306 | MS.gene69459:CDS |
TGATCAGGTTATTTATAGTT+TGG | 0.290255 | 3.3:-92576585 | MS.gene69459:CDS |
TGGAAATAGCAAGGAACTTA+TGG | 0.291694 | 3.3:-92575148 | MS.gene69459:CDS |
AGATGTACAACATAAGTTTC+AGG | 0.314019 | 3.3:+92575171 | None:intergenic |
TGAAAGTTTGCAGCTCATTC+AGG | 0.315271 | 3.3:-92574742 | MS.gene69459:CDS |
GAGAGTGAAAGAGAGGTTTC+TGG | 0.327030 | 3.3:-92572743 | MS.gene69459:CDS |
ATAGGACCAGGGAGAGTTTA+GGG | 0.339089 | 3.3:-92575305 | MS.gene69459:intron |
TCTTTGCATGCTATAGTTGT+AGG | 0.358411 | 3.3:-92574699 | MS.gene69459:CDS |
GTCACACCATCCTTGCCTTC+AGG | 0.359263 | 3.3:+92572841 | None:intergenic |
CAGTCACGGGGAGAATGTTT+TGG | 0.367113 | 3.3:-92574177 | MS.gene69459:CDS |
TGTTGAGAAGAGGCTGACTA+TGG | 0.372554 | 3.3:-92572782 | MS.gene69459:CDS |
ACTGTGGAGATCGTGGTTAA+TGG | 0.373098 | 3.3:-92572883 | MS.gene69459:CDS |
GAAACTTATGTTGTACATCT+TGG | 0.390726 | 3.3:-92575168 | MS.gene69459:CDS |
AATGTTGGACAGAGGAGTTC+AGG | 0.395727 | 3.3:-92576555 | MS.gene69459:intron |
CTGCAGAGTACTGGAAGAAT+AGG | 0.404454 | 3.3:-92575323 | MS.gene69459:CDS |
CTAGGTAAGGAGCCACTGTC+AGG | 0.405315 | 3.3:+92574580 | None:intergenic |
CTGTGGAGATCGTGGTTAAT+GGG | 0.408149 | 3.3:-92572882 | MS.gene69459:CDS |
TGCTCAGACAAAGTTTGAAA+TGG | 0.409480 | 3.3:-92574664 | MS.gene69459:CDS |
TTCATGAAATCCAAGGGGCT+TGG | 0.414417 | 3.3:+92576743 | None:intergenic |
GTGTTGGTTCTGATGTTGTT+TGG | 0.416917 | 3.3:-92576634 | MS.gene69459:CDS |
ATCATAGCACCTGCAACAAA+AGG | 0.424798 | 3.3:+92575360 | None:intergenic |
TACAGCTCTTAAAGCTGATC+TGG | 0.435509 | 3.3:-92575523 | MS.gene69459:CDS |
ATCGTGGTTAATGGGACAAC+CGG | 0.438418 | 3.3:-92572874 | MS.gene69459:CDS |
CAGGTGTTTCACGTGGTAAA+GGG | 0.445043 | 3.3:-92574791 | MS.gene69459:CDS |
GCAGGTGTTTCACGTGGTAA+AGG | 0.451121 | 3.3:-92574792 | MS.gene69459:intron |
ATGAAAGCTAGTAACATTAA+CGG | 0.460740 | 3.3:+92576893 | None:intergenic |
CCTGCCTGCAAAAGGTGAAA+AGG | 0.463848 | 3.3:-92575553 | MS.gene69459:CDS |
CTGATTCCGTTGTGCTTCGA+AGG | 0.470227 | 3.3:+92576802 | None:intergenic |
CACATATAACTGCAGAGTAC+TGG | 0.470342 | 3.3:-92575332 | MS.gene69459:CDS |
CTTTGTGGTGTTGCATGAAT+CGG | 0.474570 | 3.3:+92576826 | None:intergenic |
ATTCTAAATACTGCTGTAGC+TGG | 0.475189 | 3.3:-92575498 | MS.gene69459:CDS |
GGCATTTCGTCTGCCTGTAC+TGG | 0.475966 | 3.3:-92574133 | MS.gene69459:intron |
TCCGTCGGAAATGCACCATC+TGG | 0.478042 | 3.3:-92576767 | MS.gene69459:CDS |
TAGTTTGGAGAGTAAAATGT+TGG | 0.480059 | 3.3:-92576570 | MS.gene69459:CDS |
TTGCATGAATCGGAATTGTT+CGG | 0.482273 | 3.3:+92576836 | None:intergenic |
GCCTTCAGGATGCAGCAAAC+CGG | 0.485028 | 3.3:+92572855 | None:intergenic |
TGCTGTAGCTGGAAAGTGGC+TGG | 0.486096 | 3.3:-92575487 | MS.gene69459:CDS |
TGATAGGTCCTGCCTGCAAA+AGG | 0.486905 | 3.3:-92575561 | MS.gene69459:intron |
TGTTCTTGTTCAGAATTCTC+AGG | 0.489341 | 3.3:-92574547 | MS.gene69459:intron |
GGTTCTTCGTGAGCATGTTA+GGG | 0.489601 | 3.3:-92575097 | MS.gene69459:CDS |
AGGCTGACTATGGGAAAGAA+AGG | 0.492284 | 3.3:-92572772 | MS.gene69459:CDS |
TTGTGCTTCGAAGGTCTTTG+TGG | 0.502365 | 3.3:+92576811 | None:intergenic |
TGAATCCACCATAAAACCTT+CGG | 0.503051 | 3.3:+92575429 | None:intergenic |
GTATCCTGCTGAACATGATC+AGG | 0.504998 | 3.3:-92576600 | MS.gene69459:CDS |
CTTTGCATGCTATAGTTGTA+GGG | 0.505856 | 3.3:-92574698 | MS.gene69459:CDS |
CAGAAGATAGTGTAGCAAAG+AGG | 0.510374 | 3.3:-92575119 | MS.gene69459:CDS |
CTTCGATTTCATGAAATCCA+AGG | 0.514716 | 3.3:+92576736 | None:intergenic |
TTCGATTTCATGAAATCCAA+GGG | 0.516013 | 3.3:+92576737 | None:intergenic |
GGCGAAGCATTCAGTAGCAT+TGG | 0.516216 | 3.3:-92576930 | MS.gene69459:CDS |
TGGTGCATTTCCGACGGAAG+AGG | 0.519098 | 3.3:+92576772 | None:intergenic |
CTGCAATTCTATGTGACATA+TGG | 0.519548 | 3.3:+92572716 | None:intergenic |
GGTATGAGAGAGTGAAAGAG+AGG | 0.524664 | 3.3:-92572750 | MS.gene69459:CDS |
GCCAATTCCATCAAAAGTAA+AGG | 0.527566 | 3.3:+92576671 | None:intergenic |
AGAAGATAGTGTAGCAAAGA+GGG | 0.528791 | 3.3:-92575118 | MS.gene69459:CDS |
ATAACCTGATCATGTTCAGC+AGG | 0.529328 | 3.3:+92576596 | None:intergenic |
AGTTACCCTCGTTCTTCCGA+AGG | 0.529697 | 3.3:-92575445 | MS.gene69459:CDS |
TCCAAGGGGCTTGGACCAGA+TGG | 0.531755 | 3.3:+92576752 | None:intergenic |
GAGCATGTTAGGGAATCTCT+TGG | 0.531903 | 3.3:-92575087 | MS.gene69459:CDS |
ACAACTATAGCATGCAAAGA+TGG | 0.532628 | 3.3:+92574702 | None:intergenic |
TAGCATTGGCGAAGAAAAGA+TGG | 0.533158 | 3.3:-92576916 | MS.gene69459:CDS |
GAAATCGAAGCTAGTTCTCA+TGG | 0.534458 | 3.3:-92576723 | MS.gene69459:CDS |
AGTGAAGGACGTACCAGTAC+AGG | 0.541451 | 3.3:+92574120 | None:intergenic |
CAAGAACATCAATAGAAGCT+AGG | 0.543899 | 3.3:+92574562 | None:intergenic |
AACATACCCTAAACTCTCCC+TGG | 0.543946 | 3.3:+92575299 | None:intergenic |
GGTGCATTTCCGACGGAAGA+GGG | 0.544846 | 3.3:+92576773 | None:intergenic |
TTCACAATGTTATGTGCAAG+AGG | 0.545519 | 3.3:+92572817 | None:intergenic |
TTGCAGGGCACTGCAGCTGG+AGG | 0.549732 | 3.3:-92572907 | MS.gene69459:intron |
ACCATCTGGTCCAAGCCCCT+TGG | 0.551441 | 3.3:-92576753 | MS.gene69459:CDS |
TAGTGACATACTATTTATGA+TGG | 0.554440 | 3.3:+92575038 | None:intergenic |
CTGCATCCTGAAGGCAAGGA+TGG | 0.559919 | 3.3:-92572847 | MS.gene69459:CDS |
TCATAGCACCTGCAACAAAA+GGG | 0.561260 | 3.3:+92575361 | None:intergenic |
ACATCAATAGAAGCTAGGTA+AGG | 0.568775 | 3.3:+92574567 | None:intergenic |
ATGTTCAGCAGGATACTGAT+TGG | 0.569395 | 3.3:+92576607 | None:intergenic |
TAGAATTGCAGTGGTTCTCA+AGG | 0.573300 | 3.3:-92572704 | MS.gene69459:CDS |
ACCGGTTTGCTGCATCCTGA+AGG | 0.579599 | 3.3:-92572856 | MS.gene69459:CDS |
AGTACTGGAAGAATAGGACC+AGG | 0.581747 | 3.3:-92575317 | MS.gene69459:CDS |
GAGCTGCAAACTTTCATGAA+AGG | 0.583871 | 3.3:+92574749 | None:intergenic |
GAGAGTAAAATGTTGGACAG+AGG | 0.584323 | 3.3:-92576563 | MS.gene69459:CDS |
CACGAACTATCTCTTTCTGG+TGG | 0.584552 | 3.3:-92576695 | MS.gene69459:CDS |
AAGGATAACCATAGAAGCAA+TGG | 0.585803 | 3.3:-92574154 | MS.gene69459:CDS |
GCGAGGGAATTATTTCAAAG+AGG | 0.586349 | 3.3:-92575400 | MS.gene69459:CDS |
GTTGAGAAGAGGCTGACTAT+GGG | 0.594669 | 3.3:-92572781 | MS.gene69459:CDS |
GGCTGACTATGGGAAAGAAA+GGG | 0.596427 | 3.3:-92572771 | MS.gene69459:CDS |
ACCAGATGGTGCATTTCCGA+CGG | 0.597524 | 3.3:+92576766 | None:intergenic |
TTTGCTGCATCCTGAAGGCA+AGG | 0.599998 | 3.3:-92572851 | MS.gene69459:CDS |
CAGATTCACCCCTCTTCCGT+CGG | 0.601811 | 3.3:-92576782 | MS.gene69459:CDS |
TGGTGGATTCATGAAATGCG+AGG | 0.616138 | 3.3:-92575417 | MS.gene69459:CDS |
TGGCAAGTCATGTTGAGAAG+AGG | 0.617321 | 3.3:-92572792 | MS.gene69459:CDS |
CACTGCAGCTGGAGGCACTG+TGG | 0.621939 | 3.3:-92572899 | MS.gene69459:CDS |
TGGAGGCACTGTGGAGATCG+TGG | 0.626460 | 3.3:-92572890 | MS.gene69459:CDS |
GTGCATTTCCGACGGAAGAG+GGG | 0.627718 | 3.3:+92576774 | None:intergenic |
ATACTGCTGTAGCTGGAAAG+TGG | 0.634836 | 3.3:-92575491 | MS.gene69459:CDS |
TGTACATCTTGGAAATAGCA+AGG | 0.635730 | 3.3:-92575157 | MS.gene69459:CDS |
GGTGGATTCATGAAATGCGA+GGG | 0.637828 | 3.3:-92575416 | MS.gene69459:CDS |
TGTTAACAAAACCCTGACAG+TGG | 0.644245 | 3.3:-92574592 | MS.gene69459:CDS |
TAGGTAAGGAGCCACTGTCA+GGG | 0.644824 | 3.3:+92574581 | None:intergenic |
AACTTTCATGAAAGGCACGA+AGG | 0.649061 | 3.3:+92574757 | None:intergenic |
TTAAATGCAGGTGTTTCACG+TGG | 0.656172 | 3.3:-92574798 | MS.gene69459:intron |
ATAAAACCTTCGGAAGAACG+AGG | 0.660037 | 3.3:+92575439 | None:intergenic |
TATGTCACATAGAATTGCAG+TGG | 0.663579 | 3.3:-92572713 | MS.gene69459:CDS |
TAAAACCTTCGGAAGAACGA+GGG | 0.689246 | 3.3:+92575440 | None:intergenic |
CAAAGACCTTCGAAGCACAA+CGG | 0.690089 | 3.3:-92576808 | MS.gene69459:CDS |
TAGCACCTGCAACAAAAGGG+AGG | 0.690112 | 3.3:+92575364 | None:intergenic |
TTCTCTTCATACCAGTCACG+GGG | 0.693192 | 3.3:-92574189 | MS.gene69459:intron |
GTACTGGAAGAATAGGACCA+GGG | 0.700205 | 3.3:-92575316 | MS.gene69459:CDS |
TCGATTTCATGAAATCCAAG+GGG | 0.703979 | 3.3:+92576738 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATATTATTAAATGAATC+TGG | + | chr3.3:92574335-92574354 | None:intergenic | 10.0% |
!! | TAATTCATTGTATAAATTAA+CGG | - | chr3.3:92573327-92573346 | MS.gene69459:intron | 10.0% |
!! | TAATTTATACAATGAATTAT+AGG | + | chr3.3:92573326-92573345 | None:intergenic | 10.0% |
!!! | AAAGTATTATTTTAGTTTTT+GGG | - | chr3.3:92575377-92575396 | MS.gene69459:CDS | 10.0% |
!!! | TAAAGTATTATTTTAGTTTT+TGG | - | chr3.3:92575376-92575395 | MS.gene69459:CDS | 10.0% |
!! | AAAAATAATACTGTTAAAGT+TGG | - | chr3.3:92576339-92576358 | MS.gene69459:intron | 15.0% |
!! | ATGAAACCAAAATAATAAAA+AGG | + | chr3.3:92575785-92575804 | None:intergenic | 15.0% |
!!! | ACTATTTTTTTACTAATTTG+TGG | - | chr3.3:92575987-92576006 | MS.gene69459:intron | 15.0% |
!! | AGTAAAAAAATAGTTACACA+GGG | + | chr3.3:92575981-92576000 | None:intergenic | 20.0% |
!! | ATGAAACTAATATTATTCTG+AGG | - | chr3.3:92576271-92576290 | MS.gene69459:intron | 20.0% |
!! | TAACACGTATAGATATAAAA+GGG | + | chr3.3:92575545-92575564 | None:intergenic | 20.0% |
!! | TAGTAAAAAAATAGTTACAC+AGG | + | chr3.3:92575982-92576001 | None:intergenic | 20.0% |
!! | TATAAATTAACGGTAGAATT+TGG | - | chr3.3:92573337-92573356 | MS.gene69459:intron | 20.0% |
!! | TTAACACGTATAGATATAAA+AGG | + | chr3.3:92575546-92575565 | None:intergenic | 20.0% |
!!! | AACTTTTTTTTTCATCTGAT+TGG | - | chr3.3:92574019-92574038 | MS.gene69459:intron | 20.0% |
!!! | CATATTTGGAATTATGAATA+GGG | - | chr3.3:92573201-92573220 | MS.gene69459:intron | 20.0% |
!!! | CATTTTAATTCTACAAAATC+AGG | + | chr3.3:92574416-92574435 | None:intergenic | 20.0% |
!!! | TAGTTATGTTTTTCCATATT+TGG | - | chr3.3:92573187-92573206 | MS.gene69459:intron | 20.0% |
!!! | TTTTGTTAACAAAATGAACA+CGG | + | chr3.3:92575006-92575025 | None:intergenic | 20.0% |
!!! | TTTTTTAGATTTTTTTCGAC+AGG | + | chr3.3:92575827-92575846 | None:intergenic | 20.0% |
! | AACTTGTGTAACATTAATTG+AGG | - | chr3.3:92576400-92576419 | MS.gene69459:intron | 25.0% |
! | AAGGAAAATTAGTGAATTTG+AGG | + | chr3.3:92576122-92576141 | None:intergenic | 25.0% |
! | AATGAATATTGAATGAGTAC+AGG | + | chr3.3:92574595-92574614 | None:intergenic | 25.0% |
! | AGGTACACACTATATTAAAT+TGG | + | chr3.3:92574731-92574750 | None:intergenic | 25.0% |
! | ATCATTCAAAAAAGGCAATT+TGG | + | chr3.3:92575891-92575910 | None:intergenic | 25.0% |
! | ATGAAAGCTAGTAACATTAA+CGG | + | chr3.3:92572717-92572736 | None:intergenic | 25.0% |
! | CAATAAAGATCAAAACGAAA+AGG | + | chr3.3:92573099-92573118 | None:intergenic | 25.0% |
! | CCTATTCATAATTCCAAATA+TGG | + | chr3.3:92573203-92573222 | None:intergenic | 25.0% |
! | CTGATGTTATCATTCAAAAA+AGG | + | chr3.3:92575899-92575918 | None:intergenic | 25.0% |
! | GTAAAAAAATAGTTACACAG+GGG | + | chr3.3:92575980-92575999 | None:intergenic | 25.0% |
! | TAGTGACATACTATTTATGA+TGG | + | chr3.3:92574572-92574591 | None:intergenic | 25.0% |
! | TGATCAGGTTATTTATAGTT+TGG | - | chr3.3:92573022-92573041 | MS.gene69459:intron | 25.0% |
! | TGTGAACTATGTTTATCAAA+TGG | + | chr3.3:92573862-92573881 | None:intergenic | 25.0% |
! | TTAAAACAACTAGGATAACA+TGG | + | chr3.3:92576175-92576194 | None:intergenic | 25.0% |
! | TTACAAATAGATTCCGAAAT+TGG | + | chr3.3:92576618-92576637 | None:intergenic | 25.0% |
!! | ATCATGCAATCTAAAGTTTA+AGG | + | chr3.3:92575173-92575192 | None:intergenic | 25.0% |
!! | CCATATTTGGAATTATGAAT+AGG | - | chr3.3:92573200-92573219 | MS.gene69459:intron | 25.0% |
!! | TCAAACTTTTGACATTATGA+TGG | - | chr3.3:92575143-92575162 | MS.gene69459:CDS | 25.0% |
!! | TCATGCAATCTAAAGTTTAA+GGG | + | chr3.3:92575172-92575191 | None:intergenic | 25.0% |
!! | TGTCTGCCTTTTTATTATTT+TGG | - | chr3.3:92575776-92575795 | MS.gene69459:intron | 25.0% |
!!! | ATACATTACCAAGTTGATTA+TGG | - | chr3.3:92575097-92575116 | MS.gene69459:CDS | 25.0% |
!!! | TGCAATATGTTTTGGAAATT+AGG | + | chr3.3:92575207-92575226 | None:intergenic | 25.0% |
AAATAGGGATTTGACTCAAA+TGG | - | chr3.3:92573239-92573258 | MS.gene69459:intron | 30.0% | |
ACAAATCGATATGAGAAGAA+AGG | + | chr3.3:92575273-92575292 | None:intergenic | 30.0% | |
ACAACTCAAATATCTAGTGA+AGG | + | chr3.3:92575505-92575524 | None:intergenic | 30.0% | |
ACAATGGTGAAATCCAATAA+GGG | + | chr3.3:92573448-92573467 | None:intergenic | 30.0% | |
ACGTATAGATATAAAAGGGA+AGG | + | chr3.3:92575541-92575560 | None:intergenic | 30.0% | |
ACGTCAAAAAGTTCATTAAG+TGG | + | chr3.3:92573777-92573796 | None:intergenic | 30.0% | |
AGATGTACAACATAAGTTTC+AGG | + | chr3.3:92574439-92574458 | None:intergenic | 30.0% | |
AGTTGCAACTAACAAATGAA+TGG | + | chr3.3:92576384-92576403 | None:intergenic | 30.0% | |
ATGATTGCTTAAGTTTATGG+AGG | - | chr3.3:92573488-92573507 | MS.gene69459:intron | 30.0% | |
ATTCAGTGTGTCTACAAATA+GGG | - | chr3.3:92573224-92573243 | MS.gene69459:intron | 30.0% | |
CAATCATGTTATCAAAGCAT+TGG | + | chr3.3:92576316-92576335 | None:intergenic | 30.0% | |
CTTAGAAGTTCAATAACACA+TGG | + | chr3.3:92573996-92574015 | None:intergenic | 30.0% | |
GAAACTTATGTTGTACATCT+TGG | - | chr3.3:92574439-92574458 | MS.gene69459:intron | 30.0% | |
GTATCATGTACATTTCCTTA+AGG | + | chr3.3:92575681-92575700 | None:intergenic | 30.0% | |
TACAATGGTGAAATCCAATA+AGG | + | chr3.3:92573449-92573468 | None:intergenic | 30.0% | |
TAGTTTGGAGAGTAAAATGT+TGG | - | chr3.3:92573037-92573056 | MS.gene69459:intron | 30.0% | |
TCATATATAGACACAGAAGA+GGG | + | chr3.3:92573710-92573729 | None:intergenic | 30.0% | |
TCCATAAACTTAAGCAATCA+TGG | + | chr3.3:92573489-92573508 | None:intergenic | 30.0% | |
TGATAAACATAGTTCACATG+TGG | - | chr3.3:92573864-92573883 | MS.gene69459:intron | 30.0% | |
TGCACATAACATTGTGAAAT+TGG | - | chr3.3:92576795-92576814 | MS.gene69459:CDS | 30.0% | |
TGTAAAAAAGTGAACAGAAG+AGG | + | chr3.3:92574751-92574770 | None:intergenic | 30.0% | |
TGTAATCAGTTTGATAGAGT+TGG | - | chr3.3:92573924-92573943 | MS.gene69459:intron | 30.0% | |
TGTTTCAGAGAAAAAGATTC+AGG | - | chr3.3:92574979-92574998 | MS.gene69459:intron | 30.0% | |
TTCGATTTCATGAAATCCAA+GGG | + | chr3.3:92572873-92572892 | None:intergenic | 30.0% | |
! | CATGATATTTTCATCCAATG+CGG | - | chr3.3:92574636-92574655 | MS.gene69459:CDS | 30.0% |
! | GCTGACTTATAATCAATTCT+TGG | - | chr3.3:92576424-92576443 | MS.gene69459:intron | 30.0% |
! | TTCCGTTAAAAACTTTTGCA+GGG | - | chr3.3:92576685-92576704 | MS.gene69459:CDS | 30.0% |
! | TTTCCGTTAAAAACTTTTGC+AGG | - | chr3.3:92576684-92576703 | MS.gene69459:CDS | 30.0% |
! | TTTTGCTAGTATGTATTCTG+AGG | - | chr3.3:92574775-92574794 | MS.gene69459:CDS | 30.0% |
!! | ACAAAGTTTGCTAGTTTAGA+AGG | - | chr3.3:92575315-92575334 | MS.gene69459:CDS | 30.0% |
!! | ACCATTGTAGTGTTTTTATG+TGG | - | chr3.3:92573460-92573479 | MS.gene69459:intron | 30.0% |
!! | ACCTTTACTTTTGATGGAAT+TGG | - | chr3.3:92572935-92572954 | MS.gene69459:intron | 30.0% |
!! | AGCATGTCTTTAAAACAACT+AGG | + | chr3.3:92576184-92576203 | None:intergenic | 30.0% |
!! | CAAAGTTTGCTAGTTTAGAA+GGG | - | chr3.3:92575316-92575335 | MS.gene69459:CDS | 30.0% |
!! | GATCTTTATTGTTGTTTACG+TGG | - | chr3.3:92573108-92573127 | MS.gene69459:intron | 30.0% |
!! | GGTAACTTTTTCCTTTAAGA+CGG | + | chr3.3:92574149-92574168 | None:intergenic | 30.0% |
!! | TGCTTAACTCGTATTTTTGT+GGG | + | chr3.3:92573900-92573919 | None:intergenic | 30.0% |
!! | TTGCTTAACTCGTATTTTTG+TGG | + | chr3.3:92573901-92573920 | None:intergenic | 30.0% |
AAACAACTAGGATAACATGG+TGG | + | chr3.3:92576172-92576191 | None:intergenic | 35.0% | |
AACTGAATCAATTCGGAAGT+GGG | + | chr3.3:92575230-92575249 | None:intergenic | 35.0% | |
AACTTTGTCTCCATACATCA+TGG | + | chr3.3:92575303-92575322 | None:intergenic | 35.0% | |
AAGGATAACCATAGAAGCAA+TGG | - | chr3.3:92575453-92575472 | MS.gene69459:CDS | 35.0% | |
AATAACCAGCTGAACTAATG+AGG | + | chr3.3:92576466-92576485 | None:intergenic | 35.0% | |
ACAAAAGAACAGTGCAAATG+TGG | + | chr3.3:92576086-92576105 | None:intergenic | 35.0% | |
ACAACTATAGCATGCAAAGA+TGG | + | chr3.3:92574908-92574927 | None:intergenic | 35.0% | |
ACATCAATAGAAGCTAGGTA+AGG | + | chr3.3:92575043-92575062 | None:intergenic | 35.0% | |
AGAAGATAGTGTAGCAAAGA+GGG | - | chr3.3:92574489-92574508 | MS.gene69459:intron | 35.0% | |
AGTGTTAAATTAATGCTGCG+TGG | - | chr3.3:92573143-92573162 | MS.gene69459:intron | 35.0% | |
ATGGCAGAACTGAATCAATT+CGG | + | chr3.3:92575237-92575256 | None:intergenic | 35.0% | |
ATTCTAAATACTGCTGTAGC+TGG | - | chr3.3:92574109-92574128 | MS.gene69459:intron | 35.0% | |
CAAGAACATCAATAGAAGCT+AGG | + | chr3.3:92575048-92575067 | None:intergenic | 35.0% | |
CATATATAGACACAGAAGAG+GGG | + | chr3.3:92573709-92573728 | None:intergenic | 35.0% | |
CTCATATATAGACACAGAAG+AGG | + | chr3.3:92573711-92573730 | None:intergenic | 35.0% | |
CTGCAATTCTATGTGACATA+TGG | + | chr3.3:92576894-92576913 | None:intergenic | 35.0% | |
CTTCGATTTCATGAAATCCA+AGG | + | chr3.3:92572874-92572893 | None:intergenic | 35.0% | |
CTTTGCATGCTATAGTTGTA+GGG | - | chr3.3:92574909-92574928 | MS.gene69459:intron | 35.0% | |
GATAATGAGAAAACTGACAC+AGG | + | chr3.3:92575579-92575598 | None:intergenic | 35.0% | |
GATTCAGTGTGTCTACAAAT+AGG | - | chr3.3:92573223-92573242 | MS.gene69459:intron | 35.0% | |
GCCAATTCCATCAAAAGTAA+AGG | + | chr3.3:92572939-92572958 | None:intergenic | 35.0% | |
GCCACATAAAAACACTACAA+TGG | + | chr3.3:92573464-92573483 | None:intergenic | 35.0% | |
GCCATGATTGCTTAAGTTTA+TGG | - | chr3.3:92573485-92573504 | MS.gene69459:intron | 35.0% | |
TAAGGAAACAACAACTGAGT+AGG | + | chr3.3:92575938-92575957 | None:intergenic | 35.0% | |
TATCTTCATTTCTTCGCCAA+GGG | + | chr3.3:92576043-92576062 | None:intergenic | 35.0% | |
TATGTCACATAGAATTGCAG+TGG | - | chr3.3:92576894-92576913 | MS.gene69459:CDS | 35.0% | |
TCGATTTCATGAAATCCAAG+GGG | + | chr3.3:92572872-92572891 | None:intergenic | 35.0% | |
TCTAGGCATTTCATACAGAT+TGG | + | chr3.3:92573959-92573978 | None:intergenic | 35.0% | |
TCTTTGCATGCTATAGTTGT+AGG | - | chr3.3:92574908-92574927 | MS.gene69459:intron | 35.0% | |
TGAATCCACCATAAAACCTT+CGG | + | chr3.3:92574181-92574200 | None:intergenic | 35.0% | |
TGCTCAGACAAAGTTTGAAA+TGG | - | chr3.3:92574943-92574962 | MS.gene69459:intron | 35.0% | |
TGGAAATAGCAAGGAACTTA+TGG | - | chr3.3:92574459-92574478 | MS.gene69459:intron | 35.0% | |
TGTACATCTTGGAAATAGCA+AGG | - | chr3.3:92574450-92574469 | MS.gene69459:intron | 35.0% | |
TGTTCTTGTTCAGAATTCTC+AGG | - | chr3.3:92575060-92575079 | MS.gene69459:CDS | 35.0% | |
TTATCTTCATTTCTTCGCCA+AGG | + | chr3.3:92576044-92576063 | None:intergenic | 35.0% | |
TTCACAATGTTATGTGCAAG+AGG | + | chr3.3:92576793-92576812 | None:intergenic | 35.0% | |
TTGCATGAATCGGAATTGTT+CGG | + | chr3.3:92572774-92572793 | None:intergenic | 35.0% | |
TTTAAGAAACCGTCCCTTAT+TGG | - | chr3.3:92573432-92573451 | MS.gene69459:intron | 35.0% | |
TTTAGAAGGGACTTGAAGAT+AGG | - | chr3.3:92575329-92575348 | MS.gene69459:CDS | 35.0% | |
! | ACTTTTTGACGTTGCTCTAT+TGG | - | chr3.3:92573785-92573804 | MS.gene69459:intron | 35.0% |
! | TCATGGATTGTGCTCATTTA+AGG | - | chr3.3:92573290-92573309 | MS.gene69459:intron | 35.0% |
! | TGATGTAAGAGAAGCTTTGA+CGG | - | chr3.3:92573386-92573405 | MS.gene69459:intron | 35.0% |
! | TGCCCTGCAAAAGTTTTTAA+CGG | + | chr3.3:92576690-92576709 | None:intergenic | 35.0% |
! | TGGTTCTCAAGGAAGTTTTA+CGG | - | chr3.3:92576914-92576933 | MS.gene69459:CDS | 35.0% |
! | TGTGGATTCAACTGAGTTTT+AGG | - | chr3.3:92576005-92576024 | MS.gene69459:intron | 35.0% |
! | TGTTTGACTTCCATGATGTA+TGG | - | chr3.3:92575290-92575309 | MS.gene69459:intron | 35.0% |
!! | AGTATGTATTCTGAGGTCTA+GGG | - | chr3.3:92574782-92574801 | MS.gene69459:CDS | 35.0% |
!! | TAGTATGTATTCTGAGGTCT+AGG | - | chr3.3:92574781-92574800 | MS.gene69459:CDS | 35.0% |
!! | TGTTTCTTGCTGTTTCAACT+TGG | - | chr3.3:92576587-92576606 | MS.gene69459:CDS | 35.0% |
!!! | GTCTAGGGTTTTTTAAATGC+AGG | - | chr3.3:92574797-92574816 | MS.gene69459:intron | 35.0% |
AACACATGGATATGAACTGC+AGG | + | chr3.3:92573982-92574001 | None:intergenic | 40.0% | |
AACGTAGGAATACCGAATCA+GGG | - | chr3.3:92576210-92576229 | MS.gene69459:intron | 40.0% | |
ACGAAATGCCATTGCTTCTA+TGG | + | chr3.3:92575464-92575483 | None:intergenic | 40.0% | |
ATAAAACCTTCGGAAGAACG+AGG | + | chr3.3:92574171-92574190 | None:intergenic | 40.0% | |
ATAACCTGATCATGTTCAGC+AGG | + | chr3.3:92573014-92573033 | None:intergenic | 40.0% | |
ATCATAGCACCTGCAACAAA+AGG | + | chr3.3:92574250-92574269 | None:intergenic | 40.0% | |
ATGTTCAGCAGGATACTGAT+TGG | + | chr3.3:92573003-92573022 | None:intergenic | 40.0% | |
CAACTTGGCTACTCCAATTT+CGG | - | chr3.3:92576602-92576621 | MS.gene69459:CDS | 40.0% | |
CAAGGCAAATTGACATCGTT+TGG | - | chr3.3:92574674-92574693 | MS.gene69459:CDS | 40.0% | |
CACATATAACTGCAGAGTAC+TGG | - | chr3.3:92574275-92574294 | MS.gene69459:intron | 40.0% | |
CAGAAGATAGTGTAGCAAAG+AGG | - | chr3.3:92574488-92574507 | MS.gene69459:intron | 40.0% | |
GAACTGAATCAATTCGGAAG+TGG | + | chr3.3:92575231-92575250 | None:intergenic | 40.0% | |
GAGAGTAAAATGTTGGACAG+AGG | - | chr3.3:92573044-92573063 | MS.gene69459:intron | 40.0% | |
GAGCTGCAAACTTTCATGAA+AGG | + | chr3.3:92574861-92574880 | None:intergenic | 40.0% | |
GCGAGGGAATTATTTCAAAG+AGG | - | chr3.3:92574207-92574226 | MS.gene69459:intron | 40.0% | |
GCTCTGTTCCATAATCAACT+TGG | + | chr3.3:92575108-92575127 | None:intergenic | 40.0% | |
GTTTCCTTATGCATGCCAAT+TGG | - | chr3.3:92575949-92575968 | MS.gene69459:intron | 40.0% | |
TAAAACCTTCGGAAGAACGA+GGG | + | chr3.3:92574170-92574189 | None:intergenic | 40.0% | |
TACAGCTCTTAAAGCTGATC+TGG | - | chr3.3:92574084-92574103 | MS.gene69459:intron | 40.0% | |
TACAGTCACACAGAACACAT+AGG | + | chr3.3:92574361-92574380 | None:intergenic | 40.0% | |
TAGAATTGCAGTGGTTCTCA+AGG | - | chr3.3:92576903-92576922 | MS.gene69459:CDS | 40.0% | |
TCATAGCACCTGCAACAAAA+GGG | + | chr3.3:92574249-92574268 | None:intergenic | 40.0% | |
TCCACATGTGTAGCAAATCA+TGG | - | chr3.3:92573273-92573292 | MS.gene69459:intron | 40.0% | |
TGAAAGTTTGCAGCTCATTC+AGG | - | chr3.3:92574865-92574884 | MS.gene69459:intron | 40.0% | |
TGGCTAGAAATCACACCTTA+AGG | - | chr3.3:92575663-92575682 | MS.gene69459:intron | 40.0% | |
TGGTGAAATCCAATAAGGGA+CGG | + | chr3.3:92573444-92573463 | None:intergenic | 40.0% | |
TGTTAACAAAACCCTGACAG+TGG | - | chr3.3:92575015-92575034 | MS.gene69459:intron | 40.0% | |
TTAAATGCAGGTGTTTCACG+TGG | - | chr3.3:92574809-92574828 | MS.gene69459:intron | 40.0% | |
TTCAGTTCTGCCATCTTCAT+TGG | - | chr3.3:92575243-92575262 | MS.gene69459:intron | 40.0% | |
! | AACTTTCATGAAAGGCACGA+AGG | + | chr3.3:92574853-92574872 | None:intergenic | 40.0% |
! | GAAATCGAAGCTAGTTCTCA+TGG | - | chr3.3:92572884-92572903 | MS.gene69459:CDS | 40.0% |
! | GAAGTGGGTGCAATATGTTT+TGG | + | chr3.3:92575215-92575234 | None:intergenic | 40.0% |
! | GAATTGGCGTTTTTGTTGAG+AGG | - | chr3.3:92572951-92572970 | MS.gene69459:intron | 40.0% |
! | GATGTAAGAGAAGCTTTGAC+GGG | - | chr3.3:92573387-92573406 | MS.gene69459:intron | 40.0% |
! | TAACGGTAGAATTTGGTGAG+AGG | - | chr3.3:92573344-92573363 | MS.gene69459:intron | 40.0% |
! | TAGGATAACATGGTGGAGAA+AGG | + | chr3.3:92576165-92576184 | None:intergenic | 40.0% |
! | TAGGCACTTGAATTTTCCCT+TGG | - | chr3.3:92576024-92576043 | MS.gene69459:intron | 40.0% |
! | TCGTTCTTCCGAAGGTTTTA+TGG | - | chr3.3:92574170-92574189 | MS.gene69459:CDS | 40.0% |
! | TCTCAAGGAAGTTTTACGGA+AGG | - | chr3.3:92576918-92576937 | MS.gene69459:CDS | 40.0% |
! | TGGTATGAAGAGAAGCACAT+TGG | + | chr3.3:92575412-92575431 | None:intergenic | 40.0% |
!! | CTGCGTGGAAATGTTTTAAG+AGG | - | chr3.3:92573158-92573177 | MS.gene69459:intron | 40.0% |
!! | CTTTGTGGTGTTGCATGAAT+CGG | + | chr3.3:92572784-92572803 | None:intergenic | 40.0% |
!! | GCTCTATTGGAGTTGATAGT+TGG | - | chr3.3:92573798-92573817 | MS.gene69459:intron | 40.0% |
!! | GTGTTGGTTCTGATGTTGTT+TGG | - | chr3.3:92572973-92572992 | MS.gene69459:intron | 40.0% |
!! | TAGCATTGGCGAAGAAAAGA+TGG | - | chr3.3:92572691-92572710 | MS.gene69459:CDS | 40.0% |
!! | TCATCTGATTGGCTTCTGAT+AGG | - | chr3.3:92574030-92574049 | MS.gene69459:intron | 40.0% |
!! | TCCATGATTTGCTACACATG+TGG | + | chr3.3:92573277-92573296 | None:intergenic | 40.0% |
!! | TGGTGGACCTTTACTTTTGA+TGG | - | chr3.3:92572929-92572948 | MS.gene69459:intron | 40.0% |
!! | TTCTTCCGAAGGTTTTATGG+TGG | - | chr3.3:92574173-92574192 | MS.gene69459:CDS | 40.0% |
!! | TTTTTCGACAGGAGTGATAG+TGG | + | chr3.3:92575816-92575835 | None:intergenic | 40.0% |
AAAGGGAAGGTCATATCGAC+AGG | + | chr3.3:92575528-92575547 | None:intergenic | 45.0% | |
AACATACCCTAAACTCTCCC+TGG | + | chr3.3:92574311-92574330 | None:intergenic | 45.0% | |
AACATAGTTCACATGTGGCG+TGG | - | chr3.3:92573869-92573888 | MS.gene69459:intron | 45.0% | |
AACCATGTCATGTACCGCAT+TGG | + | chr3.3:92574653-92574672 | None:intergenic | 45.0% | |
AATAGGACCAGGGAGAGTTT+AGG | - | chr3.3:92574301-92574320 | MS.gene69459:intron | 45.0% | |
AATGTTGGACAGAGGAGTTC+AGG | - | chr3.3:92573052-92573071 | MS.gene69459:intron | 45.0% | |
ACGTAGGAATACCGAATCAG+GGG | - | chr3.3:92576211-92576230 | MS.gene69459:intron | 45.0% | |
ACTGTGGAGATCGTGGTTAA+TGG | - | chr3.3:92576724-92576743 | MS.gene69459:CDS | 45.0% | |
AGAGTCCTCATTAGTTCAGC+TGG | - | chr3.3:92576458-92576477 | MS.gene69459:intron | 45.0% | |
AGGCTGACTATGGGAAAGAA+AGG | - | chr3.3:92576835-92576854 | MS.gene69459:CDS | 45.0% | |
AGTTGGCTGTCAGATGATAC+AGG | - | chr3.3:92576356-92576375 | MS.gene69459:intron | 45.0% | |
ATACTGCTGTAGCTGGAAAG+TGG | - | chr3.3:92574116-92574135 | MS.gene69459:intron | 45.0% | |
ATAGGACCAGGGAGAGTTTA+GGG | - | chr3.3:92574302-92574321 | MS.gene69459:intron | 45.0% | |
ATCCAATGCGGTACATGACA+TGG | - | chr3.3:92574648-92574667 | MS.gene69459:CDS | 45.0% | |
ATCGTGGTTAATGGGACAAC+CGG | - | chr3.3:92576733-92576752 | MS.gene69459:CDS | 45.0% | |
ATTCGGTATTCCTACGTTCG+TGG | + | chr3.3:92576208-92576227 | None:intergenic | 45.0% | |
CAAAGACCTTCGAAGCACAA+CGG | - | chr3.3:92572799-92572818 | MS.gene69459:CDS | 45.0% | |
CACGAACTATCTCTTTCTGG+TGG | - | chr3.3:92572912-92572931 | MS.gene69459:intron | 45.0% | |
CAGGGGAGACATGTATGTTT+CGG | - | chr3.3:92576228-92576247 | MS.gene69459:intron | 45.0% | |
CAGGTGTTTCACGTGGTAAA+GGG | - | chr3.3:92574816-92574835 | MS.gene69459:intron | 45.0% | |
CATACATGTCTCCCCTGATT+CGG | + | chr3.3:92576225-92576244 | None:intergenic | 45.0% | |
CTGTGGAGATCGTGGTTAAT+GGG | - | chr3.3:92576725-92576744 | MS.gene69459:CDS | 45.0% | |
CTTCTCTTCATACCAGTCAC+GGG | - | chr3.3:92575417-92575436 | MS.gene69459:CDS | 45.0% | |
GAAAGGCCAACCAATGAAGA+TGG | + | chr3.3:92575256-92575275 | None:intergenic | 45.0% | |
GAACGTAGGAATACCGAATC+AGG | - | chr3.3:92576209-92576228 | MS.gene69459:intron | 45.0% | |
GAGAGTGAAAGAGAGGTTTC+TGG | - | chr3.3:92576864-92576883 | MS.gene69459:CDS | 45.0% | |
GAGCATGTTAGGGAATCTCT+TGG | - | chr3.3:92574520-92574539 | MS.gene69459:intron | 45.0% | |
GCTTCTCTTCATACCAGTCA+CGG | - | chr3.3:92575416-92575435 | MS.gene69459:CDS | 45.0% | |
GGCTGACTATGGGAAAGAAA+GGG | - | chr3.3:92576836-92576855 | MS.gene69459:CDS | 45.0% | |
GGTATGAGAGAGTGAAAGAG+AGG | - | chr3.3:92576857-92576876 | MS.gene69459:CDS | 45.0% | |
GGTTCTTCGTGAGCATGTTA+GGG | - | chr3.3:92574510-92574529 | MS.gene69459:intron | 45.0% | |
GTACTGGAAGAATAGGACCA+GGG | - | chr3.3:92574291-92574310 | MS.gene69459:intron | 45.0% | |
GTAGCCAATTGGCATGCATA+AGG | + | chr3.3:92575956-92575975 | None:intergenic | 45.0% | |
GTATCCTGCTGAACATGATC+AGG | - | chr3.3:92573007-92573026 | MS.gene69459:intron | 45.0% | |
GTTCTGCCATCTTCATTGGT+TGG | - | chr3.3:92575247-92575266 | MS.gene69459:intron | 45.0% | |
GTTGAGAAGAGGCTGACTAT+GGG | - | chr3.3:92576826-92576845 | MS.gene69459:CDS | 45.0% | |
TCGCACGAACTATCTCTTTC+TGG | - | chr3.3:92572909-92572928 | MS.gene69459:intron | 45.0% | |
TGGATATGAACTGCAGGTCT+AGG | + | chr3.3:92573976-92573995 | None:intergenic | 45.0% | |
TGGCAAGTCATGTTGAGAAG+AGG | - | chr3.3:92576815-92576834 | MS.gene69459:CDS | 45.0% | |
TGTTGAGAAGAGGCTGACTA+TGG | - | chr3.3:92576825-92576844 | MS.gene69459:CDS | 45.0% | |
TTCATGAAATCCAAGGGGCT+TGG | + | chr3.3:92572867-92572886 | None:intergenic | 45.0% | |
TTCTCTTCATACCAGTCACG+GGG | - | chr3.3:92575418-92575437 | MS.gene69459:CDS | 45.0% | |
TTGTGCTTCGAAGGTCTTTG+TGG | + | chr3.3:92572799-92572818 | None:intergenic | 45.0% | |
! | ACAGCCTTTTCACCTTTTGC+AGG | + | chr3.3:92574061-92574080 | None:intergenic | 45.0% |
! | AGGAAGTTTTACGGAAGGCA+AGG | - | chr3.3:92576923-92576942 | MS.gene69459:CDS | 45.0% |
! | AGTACTGGAAGAATAGGACC+AGG | - | chr3.3:92574290-92574309 | MS.gene69459:intron | 45.0% |
! | CTTTTGGTCAAGTAGCCTAG+TGG | - | chr3.3:92575643-92575662 | MS.gene69459:intron | 45.0% |
! | GATAACATGGTGGAGAAAGG+TGG | + | chr3.3:92576162-92576181 | None:intergenic | 45.0% |
! | GGTGGATTCATGAAATGCGA+GGG | - | chr3.3:92574191-92574210 | MS.gene69459:intron | 45.0% |
!! | AGGTGTGATTTCTAGCCACT+AGG | + | chr3.3:92575661-92575680 | None:intergenic | 45.0% |
!! | CTGCAGAGTACTGGAAGAAT+AGG | - | chr3.3:92574284-92574303 | MS.gene69459:intron | 45.0% |
!! | GCGTTTTTGTTGAGAGGTGT+TGG | - | chr3.3:92572957-92572976 | MS.gene69459:intron | 45.0% |
!! | TGGTGGATTCATGAAATGCG+AGG | - | chr3.3:92574190-92574209 | MS.gene69459:intron | 45.0% |
!!! | TTATTTATTATATATTCTTT+TGG | - | chr3.3:92575627-92575646 | MS.gene69459:intron | 5.0% |
AAGGTGGAGGGTTGAGCAAA+TGG | + | chr3.3:92576146-92576165 | None:intergenic | 50.0% | |
ACCAGATGGTGCATTTCCGA+CGG | + | chr3.3:92572844-92572863 | None:intergenic | 50.0% | |
AGACATGCTTCCACGAACGT+AGG | - | chr3.3:92576195-92576214 | MS.gene69459:intron | 50.0% | |
AGGTGGAGGGTTGAGCAAAT+GGG | + | chr3.3:92576145-92576164 | None:intergenic | 50.0% | |
AGTGAAGGACGTACCAGTAC+AGG | + | chr3.3:92575490-92575509 | None:intergenic | 50.0% | |
AGTTACCCTCGTTCTTCCGA+AGG | - | chr3.3:92574162-92574181 | MS.gene69459:CDS | 50.0% | |
ATAGACACAGAAGAGGGGCA+AGG | + | chr3.3:92573704-92573723 | None:intergenic | 50.0% | |
CAAAACATTCTCCCCGTGAC+TGG | + | chr3.3:92575432-92575451 | None:intergenic | 50.0% | |
CCTGCCTGCAAAAGGTGAAA+AGG | - | chr3.3:92574054-92574073 | MS.gene69459:intron | 50.0% | |
CGGTACATGACATGGTTGCA+AGG | - | chr3.3:92574656-92574675 | MS.gene69459:CDS | 50.0% | |
CTGATTCCGTTGTGCTTCGA+AGG | + | chr3.3:92572808-92572827 | None:intergenic | 50.0% | |
GCAGGTGTTTCACGTGGTAA+AGG | - | chr3.3:92574815-92574834 | MS.gene69459:intron | 50.0% | |
GGGTTCTTCGTGAGCATGTT+AGG | - | chr3.3:92574509-92574528 | MS.gene69459:intron | 50.0% | |
TAGACACAGAAGAGGGGCAA+GGG | + | chr3.3:92573703-92573722 | None:intergenic | 50.0% | |
TAGCACCTGCAACAAAAGGG+AGG | + | chr3.3:92574246-92574265 | None:intergenic | 50.0% | |
TAGGTAAGGAGCCACTGTCA+GGG | + | chr3.3:92575029-92575048 | None:intergenic | 50.0% | |
TGATAGGTCCTGCCTGCAAA+AGG | - | chr3.3:92574046-92574065 | MS.gene69459:intron | 50.0% | |
TTTGCTGCATCCTGAAGGCA+AGG | - | chr3.3:92576756-92576775 | MS.gene69459:CDS | 50.0% | |
! | AACATGGTGGAGAAAGGTGG+AGG | + | chr3.3:92576159-92576178 | None:intergenic | 50.0% |
! | AAGCACCTCCCTTTTGTTGC+AGG | - | chr3.3:92574238-92574257 | MS.gene69459:intron | 50.0% |
! | ACATGGTGGAGAAAGGTGGA+GGG | + | chr3.3:92576158-92576177 | None:intergenic | 50.0% |
! | CAGTCACGGGGAGAATGTTT+TGG | - | chr3.3:92575430-92575449 | MS.gene69459:CDS | 50.0% |
! | CCTTTTCACCTTTTGCAGGC+AGG | + | chr3.3:92574057-92574076 | None:intergenic | 50.0% |
! | GGCGAAGCATTCAGTAGCAT+TGG | - | chr3.3:92572677-92572696 | MS.gene69459:CDS | 50.0% |
! | GGTAGAATTTGGTGAGAGGC+TGG | - | chr3.3:92573348-92573367 | MS.gene69459:intron | 50.0% |
! | TACACAGGGGTGTAGCCAAT+TGG | + | chr3.3:92575967-92575986 | None:intergenic | 50.0% |
!! | CACGGGGAGAATGTTTTGGA+AGG | - | chr3.3:92575434-92575453 | MS.gene69459:CDS | 50.0% |
CAGATTCACCCCTCTTCCGT+CGG | - | chr3.3:92572825-92572844 | MS.gene69459:CDS | 55.0% | |
CAGTTGCTCTGTAGTCGCAG+AGG | + | chr3.3:92573621-92573640 | None:intergenic | 55.0% | |
CTAGGTAAGGAGCCACTGTC+AGG | + | chr3.3:92575030-92575049 | None:intergenic | 55.0% | |
CTGCATCCTGAAGGCAAGGA+TGG | - | chr3.3:92576760-92576779 | MS.gene69459:CDS | 55.0% | |
GCCTTCAGGATGCAGCAAAC+CGG | + | chr3.3:92576755-92576774 | None:intergenic | 55.0% | |
GGAGGGTTGAGCAAATGGGA+AGG | + | chr3.3:92576141-92576160 | None:intergenic | 55.0% | |
GGCATTTCGTCTGCCTGTAC+TGG | - | chr3.3:92575474-92575493 | MS.gene69459:CDS | 55.0% | |
GGTGCATTTCCGACGGAAGA+GGG | + | chr3.3:92572837-92572856 | None:intergenic | 55.0% | |
GTCACACCATCCTTGCCTTC+AGG | + | chr3.3:92576769-92576788 | None:intergenic | 55.0% | |
GTGCATTTCCGACGGAAGAG+GGG | + | chr3.3:92572836-92572855 | None:intergenic | 55.0% | |
GTGGCTGGATGCCGTCTTAA+AGG | - | chr3.3:92574135-92574154 | MS.gene69459:CDS | 55.0% | |
TCCGTCGGAAATGCACCATC+TGG | - | chr3.3:92572840-92572859 | MS.gene69459:CDS | 55.0% | |
TGCTCTGTAGTCGCAGAGGT+AGG | + | chr3.3:92573617-92573636 | None:intergenic | 55.0% | |
TGCTGTAGCTGGAAAGTGGC+TGG | - | chr3.3:92574120-92574139 | MS.gene69459:intron | 55.0% | |
TGGTGCATTTCCGACGGAAG+AGG | + | chr3.3:92572838-92572857 | None:intergenic | 55.0% | |
!! | ACCGGTTTGCTGCATCCTGA+AGG | - | chr3.3:92576751-92576770 | MS.gene69459:CDS | 55.0% |
ACAGAAGAGGGGCAAGGGAC+GGG | + | chr3.3:92573698-92573717 | None:intergenic | 60.0% | |
ACCATCTGGTCCAAGCCCCT+TGG | - | chr3.3:92572854-92572873 | MS.gene69459:CDS | 60.0% | |
CACAGAAGAGGGGCAAGGGA+CGG | + | chr3.3:92573699-92573718 | None:intergenic | 60.0% | |
GTCGCAGAGGTAGGCACAAG+CGG | + | chr3.3:92573608-92573627 | None:intergenic | 60.0% | |
TCCAAGGGGCTTGGACCAGA+TGG | + | chr3.3:92572858-92572877 | None:intergenic | 60.0% | |
!! | TGGAGGCACTGTGGAGATCG+TGG | - | chr3.3:92576717-92576736 | MS.gene69459:CDS | 60.0% |
!!! | CTTTTGCAGGGCACTGCAGC+TGG | - | chr3.3:92576697-92576716 | MS.gene69459:CDS | 60.0% |
AGAAGAGGGGCAAGGGACGG+GGG | + | chr3.3:92573696-92573715 | None:intergenic | 65.0% | |
CAGAAGAGGGGCAAGGGACG+GGG | + | chr3.3:92573697-92573716 | None:intergenic | 65.0% | |
!! | CACTGCAGCTGGAGGCACTG+TGG | - | chr3.3:92576708-92576727 | MS.gene69459:CDS | 65.0% |
!! | TTGCAGGGCACTGCAGCTGG+AGG | - | chr3.3:92576700-92576719 | MS.gene69459:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 92572675 | 92576954 | 92572675 | ID=MS.gene69459 |
chr3.3 | mRNA | 92572675 | 92576954 | 92572675 | ID=MS.gene69459.t1;Parent=MS.gene69459 |
chr3.3 | exon | 92576556 | 92576954 | 92576556 | ID=MS.gene69459.t1.exon1;Parent=MS.gene69459.t1 |
chr3.3 | CDS | 92576556 | 92576954 | 92576556 | ID=cds.MS.gene69459.t1;Parent=MS.gene69459.t1 |
chr3.3 | exon | 92575306 | 92575577 | 92575306 | ID=MS.gene69459.t1.exon2;Parent=MS.gene69459.t1 |
chr3.3 | CDS | 92575306 | 92575577 | 92575306 | ID=cds.MS.gene69459.t1;Parent=MS.gene69459.t1 |
chr3.3 | exon | 92575049 | 92575203 | 92575049 | ID=MS.gene69459.t1.exon3;Parent=MS.gene69459.t1 |
chr3.3 | CDS | 92575049 | 92575203 | 92575049 | ID=cds.MS.gene69459.t1;Parent=MS.gene69459.t1 |
chr3.3 | exon | 92574548 | 92574810 | 92574548 | ID=MS.gene69459.t1.exon4;Parent=MS.gene69459.t1 |
chr3.3 | CDS | 92574548 | 92574810 | 92574548 | ID=cds.MS.gene69459.t1;Parent=MS.gene69459.t1 |
chr3.3 | exon | 92574134 | 92574196 | 92574134 | ID=MS.gene69459.t1.exon5;Parent=MS.gene69459.t1 |
chr3.3 | CDS | 92574134 | 92574196 | 92574134 | ID=cds.MS.gene69459.t1;Parent=MS.gene69459.t1 |
chr3.3 | exon | 92572675 | 92572923 | 92572675 | ID=MS.gene69459.t1.exon6;Parent=MS.gene69459.t1 |
chr3.3 | CDS | 92572675 | 92572923 | 92572675 | ID=cds.MS.gene69459.t1;Parent=MS.gene69459.t1 |
Gene Sequence |
Protein sequence |