AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061506


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061506.t1 MTR_6g488100 95.820 311 10 2 1 309 14 323 0.0 610
MS.gene061506.t1 MTR_6g488100 94.620 316 9 3 1 309 14 328 0.0 605
MS.gene061506.t1 MTR_6g488100 94.862 253 11 1 1 251 14 266 1.18e-165 461
MS.gene061506.t1 MTR_6g488100 94.979 239 10 1 1 237 14 252 6.42e-154 431
MS.gene061506.t1 MTR_8g103065 61.471 340 77 15 1 306 15 334 1.29e-117 342
MS.gene061506.t1 MTR_2g101520 48.837 344 122 12 1 306 1 328 1.80e-89 270
MS.gene061506.t1 MTR_8g103065 56.654 263 64 13 1 233 15 257 8.27e-77 236
MS.gene061506.t1 MTR_2g011070 46.707 167 60 4 143 308 276 414 9.47e-38 139
MS.gene061506.t1 MTR_2g081820 44.509 173 70 2 133 305 287 433 3.95e-37 137
MS.gene061506.t1 MTR_2g081820 44.509 173 70 2 133 305 288 434 4.41e-37 137
MS.gene061506.t1 MTR_3g112170 40.933 193 75 4 129 305 283 452 5.69e-36 134
MS.gene061506.t1 MTR_8g466800 44.172 163 65 3 143 305 305 441 2.44e-34 130
MS.gene061506.t1 MTR_1g107185 49.655 145 58 2 158 302 138 267 2.18e-33 124
MS.gene061506.t1 MTR_1g094085 43.478 161 62 4 152 309 399 533 7.78e-31 121
MS.gene061506.t1 MTR_4g087300 37.158 183 79 3 119 301 4 150 7.26e-26 101
MS.gene061506.t1 MTR_4g087300 37.975 158 63 2 144 301 5 127 1.61e-24 97.1
MS.gene061506.t1 MTR_4g087300 37.158 183 77 4 119 301 4 148 7.48e-24 95.9
MS.gene061506.t1 MTR_8g466800 54.945 91 41 0 143 233 305 395 2.80e-22 96.3
MS.gene061506.t1 MTR_1g094085 38.053 113 43 3 198 309 423 509 1.89e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061506.t1 AT4G29100 45.340 397 125 14 1 309 15 407 4.06e-88 269
MS.gene061506.t1 AT2G20100 62.722 169 53 2 146 304 190 358 6.88e-63 203
MS.gene061506.t1 AT4G29100 41.441 333 109 13 1 251 15 343 4.41e-55 182
MS.gene061506.t1 AT2G20100 49.302 215 53 3 146 304 190 404 1.18e-53 181
MS.gene061506.t1 AT2G20100 63.303 109 37 1 146 251 190 298 2.01e-35 130
MS.gene061506.t1 AT2G20100 63.303 109 37 1 146 251 190 298 2.01e-35 130
MS.gene061506.t1 AT3G19500 47.973 148 49 3 158 305 140 259 5.93e-33 122
MS.gene061506.t1 AT1G61660 46.753 154 58 3 156 309 261 390 9.42e-33 125
MS.gene061506.t1 AT1G61660 46.753 154 58 3 156 309 264 393 1.15e-32 124
MS.gene061506.t1 AT1G61660 46.753 154 58 3 156 309 264 393 1.15e-32 124
MS.gene061506.t1 AT3G20640 46.108 167 58 5 144 305 250 389 1.30e-32 124
MS.gene061506.t1 AT3G20640 46.108 167 58 5 144 305 312 451 2.88e-32 124
MS.gene061506.t1 AT1G27660 50.704 142 37 3 150 286 310 423 3.42e-32 124
MS.gene061506.t1 AT2G31730 43.511 131 39 2 172 302 39 134 5.21e-27 103
MS.gene061506.t1 AT2G31730 43.511 131 39 2 172 302 39 134 5.21e-27 103
MS.gene061506.t1 AT4G21340 45.638 149 56 5 143 288 161 287 1.93e-26 106
MS.gene061506.t1 AT4G05170 34.746 236 111 8 51 284 76 270 6.19e-26 104
MS.gene061506.t1 AT4G05170 34.746 236 111 8 51 284 94 288 7.71e-26 105
MS.gene061506.t1 AT4G05170 46.154 130 51 3 157 284 40 152 2.81e-25 100
MS.gene061506.t1 AT4G05170 46.154 130 51 3 157 284 133 245 5.72e-25 101
MS.gene061506.t1 AT1G05710 41.985 131 41 2 172 302 29 124 1.03e-24 97.4
MS.gene061506.t1 AT1G05710 41.985 131 41 2 172 302 37 132 1.31e-24 97.4
MS.gene061506.t1 AT1G05710 41.985 131 41 2 172 302 37 132 1.31e-24 97.4
MS.gene061506.t1 AT1G05710 41.985 131 41 2 172 302 37 132 1.31e-24 97.4
MS.gene061506.t1 AT1G05710 41.985 131 41 2 172 302 37 132 1.31e-24 97.4
MS.gene061506.t1 AT1G05710 41.985 131 41 2 172 302 37 132 1.31e-24 97.4
MS.gene061506.t1 AT1G05710 41.985 131 41 2 172 302 37 132 1.31e-24 97.4
MS.gene061506.t1 AT1G05710 41.985 131 41 2 172 302 37 132 1.31e-24 97.4
MS.gene061506.t1 AT1G31050 43.125 160 63 6 153 309 300 434 1.73e-24 102
MS.gene061506.t1 AT1G31050 43.125 160 63 6 153 309 304 438 2.20e-24 102
MS.gene061506.t1 AT1G05710 42.857 133 59 4 172 302 29 146 2.71e-24 97.1
MS.gene061506.t1 AT1G05710 42.857 133 59 4 172 302 29 146 2.71e-24 97.1
MS.gene061506.t1 AT1G05710 42.857 133 59 4 172 302 37 154 3.29e-24 97.1
MS.gene061506.t1 AT1G05710 42.857 133 59 4 172 302 37 154 3.29e-24 97.1
MS.gene061506.t1 AT1G05710 42.857 133 59 4 172 302 37 154 3.29e-24 97.1
MS.gene061506.t1 AT1G05710 42.857 133 59 4 172 302 37 154 3.29e-24 97.1
MS.gene061506.t1 AT1G31050 44.079 152 57 6 158 306 305 431 1.73e-23 100
MS.gene061506.t1 AT4G05170 36.898 187 93 6 51 237 76 237 3.38e-22 93.6
MS.gene061506.t1 AT1G49830 42.623 122 41 2 182 303 134 226 3.17e-21 90.9
MS.gene061506.t1 AT1G61660 62.162 74 28 0 156 229 264 337 3.40e-21 92.8
MS.gene061506.t1 AT1G61660 62.162 74 28 0 156 229 264 337 3.40e-21 92.8
MS.gene061506.t1 AT1G49830 42.623 122 41 2 182 303 133 225 3.44e-21 90.9
MS.gene061506.t1 AT4G05170 38.182 165 78 5 51 215 76 216 2.10e-20 88.2
MS.gene061506.t1 AT4G05170 38.182 165 78 5 51 215 76 216 2.10e-20 88.2
MS.gene061506.t1 AT3G20640 52.632 95 39 2 144 233 312 405 2.22e-20 90.9
MS.gene061506.t1 AT3G19500 61.765 68 26 0 158 225 140 207 4.73e-20 87.4
MS.gene061506.t1 AT1G61660 34.132 167 74 5 143 309 241 371 8.41e-18 83.2
MS.gene061506.t1 AT3G20640 54.545 77 29 2 144 215 312 387 1.21e-15 77.0
MS.gene061506.t1 AT1G31050 53.030 66 30 1 153 217 300 365 8.84e-12 65.5
MS.gene061506.t1 AT1G31050 53.030 66 30 1 153 217 304 369 9.48e-12 65.5

Find 86 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAAGTTGGTGCATAATT+AGG 0.122725 6.1:+76865623 None:intergenic
TTATTGATGTTCCACCAATT+AGG 0.248969 6.1:+76865707 None:intergenic
TTACAGCTCCTAAATGAAAA+TGG 0.255266 6.1:-76860861 MS.gene061506:intron
TGGTTATATCAGATTCCTTC+AGG 0.271543 6.1:-76862978 MS.gene061506:CDS
CTACTCTTTAGGTCCTTCTT+TGG 0.274553 6.1:+76860515 None:intergenic
CCTGATCCATTGTTCAAGTA+TGG 0.280772 6.1:+76862786 None:intergenic
ATGACAATGGAGCTGATTAT+TGG 0.285895 6.1:-76860448 MS.gene061506:CDS
TAATTGAAGGGGTGGAATTG+TGG 0.287660 6.1:-76865096 MS.gene061506:intron
CATCAGCTTGTTTCCCCATT+TGG 0.289480 6.1:-76863814 MS.gene061506:CDS
ATTACCTGACCAGGGTCTTC+AGG 0.299545 6.1:+76861094 None:intergenic
TGATGGCTAGTAACCCTAAT+TGG 0.323527 6.1:-76865721 MS.gene061506:CDS
TATTGATGTTCCACCAATTA+GGG 0.326053 6.1:+76865708 None:intergenic
ATGAAGTTGGTGCATAATTA+GGG 0.328916 6.1:+76865624 None:intergenic
CAGGTTAGGAAGGAGAAGTT+AGG 0.364935 6.1:-76863856 MS.gene061506:CDS
GAAAATAAAGGAGGAGGTTG+TGG 0.373125 6.1:+76865668 None:intergenic
TTAGAAGGAGATGAAAATAA+AGG 0.374150 6.1:+76865656 None:intergenic
TCTGTCTTGTTAGAAGCTAT+TGG 0.377963 6.1:-76862998 MS.gene061506:CDS
AATTAATTACCTTTCCAAAT+GGG 0.386503 6.1:+76863800 None:intergenic
AGTTGTTGACTCCATGGTTC+GGG 0.390425 6.1:+76865557 None:intergenic
AATTGAAGGGGTGGAATTGT+GGG 0.398017 6.1:-76865095 MS.gene061506:intron
ACATCAACAAGAGAAGCATT+TGG 0.400442 6.1:+76865014 None:intergenic
ACTTGTAGTGTACATGATAC+TGG 0.401193 6.1:+76860476 None:intergenic
TTAGGGTTGAGAAAGTTAGA+AGG 0.407564 6.1:+76865641 None:intergenic
TGACAATGGAGCTGATTATT+GGG 0.408868 6.1:-76860447 MS.gene061506:CDS
CCCTAGGAGGAGGAGGCTTT+CGG 0.409114 6.1:-76860418 MS.gene061506:CDS
TACAACTCAAACTACTTTCA+AGG 0.412851 6.1:-76864152 MS.gene061506:intron
TTTAATCTTAATTAGGTTCA+AGG 0.413424 6.1:-76861136 MS.gene061506:intron
GACACAACCCTCTACTCTTT+AGG 0.414717 6.1:+76860504 None:intergenic
TAATTAATTACCTTTCCAAA+TGG 0.416474 6.1:+76863799 None:intergenic
GAGTTGTTGACTCCATGGTT+CGG 0.439817 6.1:+76865556 None:intergenic
AAAGGAAGAAAAGATGAAGT+TGG 0.451016 6.1:+76865611 None:intergenic
AAAGGAGGAGGTTGTGGAGA+TGG 0.454745 6.1:+76865674 None:intergenic
TCAGGAAATAGCTATGCATA+TGG 0.457920 6.1:-76864978 MS.gene061506:CDS
GCACCTGCCCTAGGAGGAGG+AGG 0.461982 6.1:-76860425 MS.gene061506:CDS
AAGTGTAACAGTTCTGCATC+TGG 0.468089 6.1:-76864208 MS.gene061506:CDS
AAACACAAGGCAACAACATC+CGG 0.472522 6.1:-76862763 MS.gene061506:intron
TTACCTGACCAGGGTCTTCA+GGG 0.475060 6.1:+76861095 None:intergenic
ACCGAAAGCCTCCTCCTCCT+AGG 0.478830 6.1:+76860417 None:intergenic
ATTAATTACCTTTCCAAATG+GGG 0.483813 6.1:+76863801 None:intergenic
GGTTATATCAGATTCCTTCA+GGG 0.485572 6.1:-76862977 MS.gene061506:CDS
AAGAAGGACCTAAAGAGTAG+AGG 0.491449 6.1:-76860512 MS.gene061506:CDS
ATTCCCTGAAGACCCTGGTC+AGG 0.501966 6.1:-76861098 MS.gene061506:intron
CCATACTTGAACAATGGATC+AGG 0.502640 6.1:-76862786 MS.gene061506:CDS
TTCTCAATTTCAGGTTAGGA+AGG 0.504978 6.1:-76863866 MS.gene061506:intron
AGCTTACCATACTTGAACAA+TGG 0.505172 6.1:-76862792 MS.gene061506:CDS
GATTATTGGGCACCTGCCCT+AGG 0.505746 6.1:-76860434 MS.gene061506:CDS
AGAAGGACCTAAAGAGTAGA+GGG 0.506332 6.1:-76860511 MS.gene061506:CDS
ATGGGGAAACAAGCTGATGA+AGG 0.508848 6.1:+76863818 None:intergenic
ATTCCTTCAGGGTCAAATTG+AGG 0.512155 6.1:-76862966 MS.gene061506:intron
TGGGCACCTGCCCTAGGAGG+AGG 0.520166 6.1:-76860428 MS.gene061506:CDS
GGAGATGAAAATAAAGGAGG+AGG 0.522950 6.1:+76865662 None:intergenic
TATCATGTACACTACAAGTT+GGG 0.530955 6.1:-76860472 MS.gene061506:CDS
ATCCAAAGGATTACCTGACC+AGG 0.531475 6.1:+76861085 None:intergenic
AAGCCTCCTCCTCCTAGGGC+AGG 0.533559 6.1:+76860422 None:intergenic
TACATGAGTTGTTGACTCCA+TGG 0.541593 6.1:+76865551 None:intergenic
TTCTCAAGAAGAACCAAAGA+AGG 0.544458 6.1:-76860528 MS.gene061506:CDS
CCGAAAGCCTCCTCCTCCTA+GGG 0.547448 6.1:+76860418 None:intergenic
GAAGAGGAAAGCAGCTGAAG+AGG 0.554156 6.1:-76860835 MS.gene061506:intron
GAAGGAGATGAAAATAAAGG+AGG 0.562051 6.1:+76865659 None:intergenic
GCTTGTTTCCCCATTTGGAA+AGG 0.570374 6.1:-76863809 MS.gene061506:intron
AAGTTTCAATAACAACATGT+TGG 0.571684 6.1:-76864922 MS.gene061506:CDS
ATCAAGAGCTTCCCGAACCA+TGG 0.573656 6.1:-76865568 MS.gene061506:CDS
GTAACAGTTCTGCATCTGGT+GGG 0.576642 6.1:-76864204 MS.gene061506:CDS
TGTTTATTCCCTGAAGACCC+TGG 0.579599 6.1:-76861103 MS.gene061506:CDS
TGTAACAGTTCTGCATCTGG+TGG 0.591294 6.1:-76864205 MS.gene061506:CDS
TGGCTAGTAACCCTAATTGG+TGG 0.593806 6.1:-76865718 MS.gene061506:CDS
GGAGGAGGTTGTGGAGATGG+TGG 0.593961 6.1:+76865677 None:intergenic
TAAATGAAAATGGTTTGAAG+AGG 0.595062 6.1:-76860851 MS.gene061506:CDS
TAACAGTTCTGCATCTGGTG+GGG 0.597084 6.1:-76864203 MS.gene061506:CDS
GTATCATGTACACTACAAGT+TGG 0.599973 6.1:-76860473 MS.gene061506:CDS
TCACCTCAATTTGACCCTGA+AGG 0.601592 6.1:+76862963 None:intergenic
GATGTTAAACAAGAAAACTC+AGG 0.605746 6.1:-76864996 MS.gene061506:CDS
TGGGGAAACAAGCTGATGAA+GGG 0.608733 6.1:+76863819 None:intergenic
ATTGAAGGGGTGGAATTGTG+GGG 0.610742 6.1:-76865094 MS.gene061506:intron
TATTGGGCACCTGCCCTAGG+AGG 0.619502 6.1:-76860431 MS.gene061506:CDS
AATAGCTATGCATATGGACA+TGG 0.627229 6.1:-76864972 MS.gene061506:CDS
ACCTCAGAAGATCGATCTAG+TGG 0.628411 6.1:+76864858 None:intergenic
CTACAAGTTGGGAATGACAA+TGG 0.634609 6.1:-76860461 MS.gene061506:CDS
ACCACTAGATCGATCTTCTG+AGG 0.634967 6.1:-76864859 MS.gene061506:intron
TTGAAGGGGTGGAATTGTGG+GGG 0.650816 6.1:-76865093 MS.gene061506:intron
TCAGAAGATCGATCTAGTGG+TGG 0.660060 6.1:+76864861 None:intergenic
TCCAAAGGATTACCTGACCA+GGG 0.669498 6.1:+76861086 None:intergenic
ACAATAGTAATATAGATGTG+AGG 0.676915 6.1:-76864887 MS.gene061506:CDS
GGTGGAACATCAATAACATG+AGG 0.683914 6.1:-76865700 MS.gene061506:CDS
AATAGCTTCTAACAAGACAG+AGG 0.708748 6.1:+76863000 None:intergenic
ACAATGGATCAGGAAACACA+AGG 0.764788 6.1:-76862776 MS.gene061506:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGTTATAAATTAAAG+TGG - chr6.1:76862508-76862527 MS.gene061506:intron 10.0%
!! AGTAAATATTCAAAATAAAT+TGG - chr6.1:76864435-76864454 MS.gene061506:intron 10.0%
!! ATTGCATATATAATTTATAT+TGG + chr6.1:76861542-76861561 None:intergenic 10.0%
!! GTAAATATTCAAAATAAATT+GGG - chr6.1:76864436-76864455 MS.gene061506:intron 10.0%
!! GTAATTATTTAATCTTAATT+AGG - chr6.1:76864994-76865013 MS.gene061506:CDS 10.0%
!!! AAAATCTAATTAATTGTTTT+TGG - chr6.1:76861017-76861036 MS.gene061506:intron 10.0%
!!! AATCACTATTTTTTTTTTAA+GGG - chr6.1:76860628-76860647 MS.gene061506:intron 10.0%
!!! CTTTTATAAAAAAGATTAAA+GGG + chr6.1:76864022-76864041 None:intergenic 10.0%
!!! GTAAATTACTTTATTATTTT+TGG - chr6.1:76861853-76861872 MS.gene061506:intron 10.0%
!!! TAATCACTATTTTTTTTTTA+AGG - chr6.1:76860627-76860646 MS.gene061506:intron 10.0%
!!! TAGTTTATAACTTTTTATTT+GGG + chr6.1:76863830-76863849 None:intergenic 10.0%
!!! TCTTTTATAAAAAAGATTAA+AGG + chr6.1:76864023-76864042 None:intergenic 10.0%
!!! TTAGTTTATAACTTTTTATT+TGG + chr6.1:76863831-76863850 None:intergenic 10.0%
!! AATTTCTTATTGAATATACT+AGG + chr6.1:76862366-76862385 None:intergenic 15.0%
!! ATACATATATTGTTAATTAG+AGG - chr6.1:76863968-76863987 MS.gene061506:intron 15.0%
!! ATATATGAATAATCAAAACA+AGG - chr6.1:76865131-76865150 MS.gene061506:intron 15.0%
!! ATTATCACCTTTAATTAATT+TGG - chr6.1:76861459-76861478 MS.gene061506:intron 15.0%
!! TACATATATTGTTAATTAGA+GGG - chr6.1:76863969-76863988 MS.gene061506:intron 15.0%
!! TATATGAATAATCAAAACAA+GGG - chr6.1:76865132-76865151 MS.gene061506:intron 15.0%
!! TTAATTAAAGGTGATAATAT+TGG + chr6.1:76861457-76861476 None:intergenic 15.0%
!! TTGACTTTATAAAAAAAAAC+CGG - chr6.1:76864106-76864125 MS.gene061506:intron 15.0%
!! TTTGAATATAAATAACCAAA+TGG - chr6.1:76864267-76864286 MS.gene061506:intron 15.0%
!!! AATAATTCTTATTTTTACGA+AGG + chr6.1:76864808-76864827 None:intergenic 15.0%
!!! TAAGAAATTTTTCACTTTTT+TGG + chr6.1:76863637-76863656 None:intergenic 15.0%
!!! TATGATTTTAAACTAAAGAA+AGG + chr6.1:76861587-76861606 None:intergenic 15.0%
!!! TCAAAGACAAAATATTTTTT+TGG + chr6.1:76865437-76865456 None:intergenic 15.0%
!!! TCTTTAGTTTAAAATCATAA+GGG - chr6.1:76861588-76861607 MS.gene061506:intron 15.0%
!!! TTATATGCTTTTTAATAGAA+AGG - chr6.1:76862388-76862407 MS.gene061506:intron 15.0%
!!! TTCTTTAGTTTAAAATCATA+AGG - chr6.1:76861587-76861606 MS.gene061506:intron 15.0%
!!! TTTTGGTCTATAATTTTTAT+TGG + chr6.1:76865420-76865439 None:intergenic 15.0%
!! AAATTAAAGGATAGTGTTAA+CGG + chr6.1:76862839-76862858 None:intergenic 20.0%
!! AACAATTATCATGGATAATA+TGG - chr6.1:76864207-76864226 MS.gene061506:CDS 20.0%
!! AAGATCAAATATATCAATCT+TGG - chr6.1:76864083-76864102 MS.gene061506:intron 20.0%
!! AATCACTACTAAATTAGTAA+GGG - chr6.1:76860656-76860675 MS.gene061506:intron 20.0%
!! AATTAATTACCTTTCCAAAT+GGG + chr6.1:76862340-76862359 None:intergenic 20.0%
!! ACATTAGTTCATATGAAATA+TGG - chr6.1:76861814-76861833 MS.gene061506:intron 20.0%
!! ATATGAATAATCAAAACAAG+GGG - chr6.1:76865133-76865152 MS.gene061506:intron 20.0%
!! ATTATATATGCAATCTCAAA+AGG - chr6.1:76861548-76861567 MS.gene061506:intron 20.0%
!! ATTGCATTATATATAGAAAG+TGG - chr6.1:76863060-76863079 MS.gene061506:intron 20.0%
!! CATTCAATAAATGATTTATG+TGG + chr6.1:76863612-76863631 None:intergenic 20.0%
!! CATTCAATAAATTATGTATG+TGG - chr6.1:76863573-76863592 MS.gene061506:intron 20.0%
!! GTTGCTTCAAAAAAAAAATT+TGG + chr6.1:76863875-76863894 None:intergenic 20.0%
!! TAATTAATTACCTTTCCAAA+TGG + chr6.1:76862341-76862360 None:intergenic 20.0%
!! TGTAGTAGCAAATAAATTAA+AGG + chr6.1:76862852-76862871 None:intergenic 20.0%
!! TTTAATCTTAATTAGGTTCA+AGG - chr6.1:76865001-76865020 MS.gene061506:CDS 20.0%
!!! AAATTTCTTACATTTGAGAT+CGG - chr6.1:76863647-76863666 MS.gene061506:intron 20.0%
!!! AATTTTTTCTCTAATAGTGA+TGG + chr6.1:76862614-76862633 None:intergenic 20.0%
!!! AGAAGTATTACTTTAAAAAC+TGG - chr6.1:76864130-76864149 MS.gene061506:intron 20.0%
!!! ATGACAAGTAATTTTTTTGA+GGG + chr6.1:76863435-76863454 None:intergenic 20.0%
!!! ATTTTAAACTAAAGAAAGGT+TGG + chr6.1:76861583-76861602 None:intergenic 20.0%
!!! CTATATTTTGTTGTTGTATT+AGG + chr6.1:76862202-76862221 None:intergenic 20.0%
!!! CTTTAGTTTAAAATCATAAG+GGG - chr6.1:76861589-76861608 MS.gene061506:intron 20.0%
!!! TATGACAAGTAATTTTTTTG+AGG + chr6.1:76863436-76863455 None:intergenic 20.0%
!!! TGGAAAATGACAATTATTTT+AGG - chr6.1:76864150-76864169 MS.gene061506:intron 20.0%
!!! TTAGCATTTGATTTTGAAAT+TGG + chr6.1:76861092-76861111 None:intergenic 20.0%
!!! TTGTAGAATGAAAGAAATTT+TGG + chr6.1:76861911-76861930 None:intergenic 20.0%
!!! TTTTAAACTAAAGAAAGGTT+GGG + chr6.1:76861582-76861601 None:intergenic 20.0%
!!! TTTTAAAGTAATACTTCTTC+CGG + chr6.1:76864128-76864147 None:intergenic 20.0%
!!! TTTTTTTTTGTTCCCTATTT+TGG + chr6.1:76862479-76862498 None:intergenic 20.0%
! AAAAATTTCTTCATGTATGG+TGG - chr6.1:76861645-76861664 MS.gene061506:intron 25.0%
! AAAATTCAAACGTATGTGTT+TGG - chr6.1:76860978-76860997 MS.gene061506:intron 25.0%
! AAGTTTCAATAACAACATGT+TGG - chr6.1:76861215-76861234 MS.gene061506:intron 25.0%
! AATTAAAGGATAGTGTTAAC+GGG + chr6.1:76862838-76862857 None:intergenic 25.0%
! ACAATAGTAATATAGATGTG+AGG - chr6.1:76861250-76861269 MS.gene061506:intron 25.0%
! ACATGTTGTGTTAAAATCAA+GGG - chr6.1:76864749-76864768 MS.gene061506:intron 25.0%
! ACTATCAAAATATATTGTCG+AGG + chr6.1:76864587-76864606 None:intergenic 25.0%
! ATCACTACTAAATTAGTAAG+GGG - chr6.1:76860657-76860676 MS.gene061506:intron 25.0%
! ATGCATAATATTCACCATAA+TGG + chr6.1:76860845-76860864 None:intergenic 25.0%
! ATTAATTACCTTTCCAAATG+GGG + chr6.1:76862339-76862358 None:intergenic 25.0%
! CAATCACTACTAAATTAGTA+AGG - chr6.1:76860655-76860674 MS.gene061506:intron 25.0%
! CTAGTTTATGGATAATTATG+TGG - chr6.1:76864952-76864971 MS.gene061506:CDS 25.0%
! GAATAATTGCAATTGAGAAT+TGG + chr6.1:76862117-76862136 None:intergenic 25.0%
! GAATCGAACAAATGAATAAT+TGG + chr6.1:76863905-76863924 None:intergenic 25.0%
! GACAAAAATTTCTTCATGTA+TGG - chr6.1:76861642-76861661 MS.gene061506:intron 25.0%
! TAAATGAAAATGGTTTGAAG+AGG - chr6.1:76865286-76865305 MS.gene061506:intron 25.0%
! TAAGTAAAGTCAATCGAAAA+TGG + chr6.1:76863748-76863767 None:intergenic 25.0%
! TAGGCTTATTTATAATGTGA+TGG - chr6.1:76864382-76864401 MS.gene061506:intron 25.0%
! TATTAAAAATCTGCTAAAGC+TGG + chr6.1:76865103-76865122 None:intergenic 25.0%
! TGCAAATACAACAATTATCA+TGG - chr6.1:76864198-76864217 MS.gene061506:CDS 25.0%
! TTAGAAGGAGATGAAAATAA+AGG + chr6.1:76860484-76860503 None:intergenic 25.0%
! TTGACCATATTAATTCTTAC+CGG + chr6.1:76863396-76863415 None:intergenic 25.0%
! TTGTTATGTGAAATGTGAAA+TGG + chr6.1:76863263-76863282 None:intergenic 25.0%
!! TCAAATTTTTCATAGCAACA+CGG - chr6.1:76861758-76861777 MS.gene061506:intron 25.0%
!! TCTTCAAACCATTTTCATTT+AGG + chr6.1:76865287-76865306 None:intergenic 25.0%
!! TGTTAATTAGAGGGTATAAA+TGG - chr6.1:76863978-76863997 MS.gene061506:intron 25.0%
!!! AAAAATGTAGTTTGTTCCTT+TGG - chr6.1:76864718-76864737 MS.gene061506:intron 25.0%
!!! AATTGTTTTTGGCTAATTGA+AGG - chr6.1:76861028-76861047 MS.gene061506:intron 25.0%
!!! ACATTTCTCTTTAGTTCTAA+TGG + chr6.1:76865078-76865097 None:intergenic 25.0%
!!! ATTCCACTTTTCAGATAAAA+GGG + chr6.1:76863800-76863819 None:intergenic 25.0%
!!! ATTGTTTTTGGCTAATTGAA+GGG - chr6.1:76861029-76861048 MS.gene061506:intron 25.0%
!!! TTCATGTACCTTTTTTTTCT+TGG - chr6.1:76861388-76861407 MS.gene061506:intron 25.0%
!!! TTCTTATTTTTACGAAGGTA+TGG + chr6.1:76864803-76864822 None:intergenic 25.0%
!!! TTTCTGCATGATATTTTAGA+GGG - chr6.1:76863007-76863026 MS.gene061506:CDS 25.0%
!!! TTTTCTGCATGATATTTTAG+AGG - chr6.1:76863006-76863025 MS.gene061506:CDS 25.0%
AAACATACAAATACCATGTG+GGG - chr6.1:76862065-76862084 MS.gene061506:intron 30.0%
AAAGGAAGAAAAGATGAAGT+TGG + chr6.1:76860529-76860548 None:intergenic 30.0%
AAATTTCATGCTTAGCCATT+TGG + chr6.1:76864285-76864304 None:intergenic 30.0%
AAGATATCATGAAAACGTGT+AGG + chr6.1:76862250-76862269 None:intergenic 30.0%
ACAAACATACAAATACCATG+TGG - chr6.1:76862063-76862082 MS.gene061506:intron 30.0%
ACATCCGGTAAGAATTAATA+TGG - chr6.1:76863389-76863408 MS.gene061506:intron 30.0%
ACGTATGTGTTTGGTTAATT+AGG - chr6.1:76860987-76861006 MS.gene061506:intron 30.0%
ATAATTCCAAGAGAGGAAAA+AGG + chr6.1:76863315-76863334 None:intergenic 30.0%
ATATATAGAAAGTGGTGACT+AGG - chr6.1:76863068-76863087 MS.gene061506:intron 30.0%
ATCAGAGTTCAATTCTTAGA+TGG - chr6.1:76863720-76863739 MS.gene061506:intron 30.0%
ATGTGTTTGGTTAATTAGGA+AGG - chr6.1:76860991-76861010 MS.gene061506:intron 30.0%
ATTCATAAAAAGTCTAGCCA+TGG + chr6.1:76861369-76861388 None:intergenic 30.0%
CAAACATACAAATACCATGT+GGG - chr6.1:76862064-76862083 MS.gene061506:intron 30.0%
CACATGTTGTGTTAAAATCA+AGG - chr6.1:76864748-76864767 MS.gene061506:intron 30.0%
CATGTTGGCAATAACTAATT+AGG - chr6.1:76865585-76865604 MS.gene061506:CDS 30.0%
CATGTTGTGTTAAAATCAAG+GGG - chr6.1:76864750-76864769 MS.gene061506:intron 30.0%
CTCATTGACCAAGAAAAAAA+AGG + chr6.1:76861399-76861418 None:intergenic 30.0%
CTCTTGGCCAAATTAATTAA+AGG + chr6.1:76861469-76861488 None:intergenic 30.0%
GATATCTTGTTCTCAATTTC+AGG - chr6.1:76862262-76862281 MS.gene061506:intron 30.0%
GATGTTAAACAAGAAAACTC+AGG - chr6.1:76861141-76861160 MS.gene061506:intron 30.0%
GTAAAGTTTCTTGAAAAGTG+AGG + chr6.1:76861435-76861454 None:intergenic 30.0%
TACAACTCAAACTACTTTCA+AGG - chr6.1:76861985-76862004 MS.gene061506:intron 30.0%
TATATTGTCGAGGATATTAG+AGG + chr6.1:76864577-76864596 None:intergenic 30.0%
TATCATGTACACTACAAGTT+GGG - chr6.1:76865665-76865684 MS.gene061506:CDS 30.0%
TATTGATGTTCCACCAATTA+GGG + chr6.1:76860432-76860451 None:intergenic 30.0%
TCCTTAAAGAGAAAAGCTTA+GGG - chr6.1:76864521-76864540 MS.gene061506:intron 30.0%
TTACAGCTCCTAAATGAAAA+TGG - chr6.1:76865276-76865295 MS.gene061506:intron 30.0%
TTAGTGACAAGAGATTTAGA+GGG - chr6.1:76860740-76860759 MS.gene061506:intron 30.0%
TTATTGATGTTCCACCAATT+AGG + chr6.1:76860433-76860452 None:intergenic 30.0%
TTCCTTAAAGAGAAAAGCTT+AGG - chr6.1:76864520-76864539 MS.gene061506:intron 30.0%
TTGCTGATGAAAATTAGACT+TGG + chr6.1:76865494-76865513 None:intergenic 30.0%
! AAGTTTCTTACATTTGAGAC+CGG + chr6.1:76863538-76863557 None:intergenic 30.0%
! CTTTTCTTCCTTTTTCTTCA+TGG - chr6.1:76860536-76860555 MS.gene061506:intron 30.0%
! GAAGTGCTAAATATTAGGAA+AGG - chr6.1:76864644-76864663 MS.gene061506:intron 30.0%
! GACTTGTTCTATAACCATTA+TGG - chr6.1:76860828-76860847 MS.gene061506:intron 30.0%
! TTTATTTGCTACTACATTCG+AGG - chr6.1:76862856-76862875 MS.gene061506:intron 30.0%
! TTTTCATGCCATGAAGAAAA+AGG + chr6.1:76860547-76860566 None:intergenic 30.0%
!! ACAGAGAAGTGCTAAATATT+AGG - chr6.1:76864639-76864658 MS.gene061506:intron 30.0%
!! ATGAAGTTGGTGCATAATTA+GGG + chr6.1:76860516-76860535 None:intergenic 30.0%
!! CATTCCACTTTTCAGATAAA+AGG + chr6.1:76863801-76863820 None:intergenic 30.0%
!! CTTATGTGTCTTTTTCATGT+TGG - chr6.1:76865570-76865589 MS.gene061506:CDS 30.0%
!! TTCCCTATTTTGGATTTAGT+GGG + chr6.1:76862469-76862488 None:intergenic 30.0%
!! TTCTGCATGATATTTTAGAG+GGG - chr6.1:76863008-76863027 MS.gene061506:CDS 30.0%
!! TTTAGTTCTAATGGATCCAA+AGG + chr6.1:76865069-76865088 None:intergenic 30.0%
!!! AAACCCCTTCCTTTTTTTTA+GGG + chr6.1:76865162-76865181 None:intergenic 30.0%
!!! TTGTTTTTGGCTAATTGAAG+GGG - chr6.1:76861030-76861049 MS.gene061506:intron 30.0%
AAAATGATATCGAGTGCTCT+TGG - chr6.1:76862681-76862700 MS.gene061506:intron 35.0%
AAATGATATCGAGTGCTCTT+GGG - chr6.1:76862682-76862701 MS.gene061506:intron 35.0%
AAGTGCACATGCTAAAAAGT+TGG + chr6.1:76862225-76862244 None:intergenic 35.0%
AATAGCTATGCATATGGACA+TGG - chr6.1:76861165-76861184 MS.gene061506:intron 35.0%
AATAGCTTCTAACAAGACAG+AGG + chr6.1:76863140-76863159 None:intergenic 35.0%
AATTGTTTCGTGTGTGTCTT+TGG - chr6.1:76864777-76864796 MS.gene061506:intron 35.0%
ACTTGTAGTGTACATGATAC+TGG + chr6.1:76865664-76865683 None:intergenic 35.0%
AGCTTACCATACTTGAACAA+TGG - chr6.1:76863345-76863364 MS.gene061506:intron 35.0%
AGGTATAATGCAAACTTCCA+TGG - chr6.1:76862005-76862024 MS.gene061506:intron 35.0%
ATCCCCACTAAATCCAAAAT+AGG - chr6.1:76862463-76862482 MS.gene061506:intron 35.0%
ATGAAAGAGAGTTAAGGAGT+TGG + chr6.1:76862039-76862058 None:intergenic 35.0%
ATGACAATGGAGCTGATTAT+TGG - chr6.1:76865689-76865708 MS.gene061506:CDS 35.0%
CTGATGAAAATTAGACTTGG+AGG + chr6.1:76865491-76865510 None:intergenic 35.0%
CTTCCCTAAAAAAAAGGAAG+GGG - chr6.1:76865156-76865175 MS.gene061506:intron 35.0%
GAAGGAGATGAAAATAAAGG+AGG + chr6.1:76860481-76860500 None:intergenic 35.0%
GCTTCCCTAAAAAAAAGGAA+GGG - chr6.1:76865155-76865174 MS.gene061506:intron 35.0%
GCTTCTTCATTAAGAATCCA+TGG - chr6.1:76861349-76861368 MS.gene061506:intron 35.0%
GGAGTAACTATTGTCTTTCT+TGG - chr6.1:76862086-76862105 MS.gene061506:intron 35.0%
GGTTATATCAGATTCCTTCA+GGG - chr6.1:76863160-76863179 MS.gene061506:intron 35.0%
GTATCATGTACACTACAAGT+TGG - chr6.1:76865664-76865683 MS.gene061506:CDS 35.0%
GTATGCATGAAAGAGAGTTA+AGG + chr6.1:76862045-76862064 None:intergenic 35.0%
GTTAGTGACAAGAGATTTAG+AGG - chr6.1:76860739-76860758 MS.gene061506:intron 35.0%
TAGTGACAAGAGATTTAGAG+GGG - chr6.1:76860741-76860760 MS.gene061506:intron 35.0%
TCACTAAATAATACTCCCTC+CGG - chr6.1:76863516-76863535 MS.gene061506:intron 35.0%
TCAGGAAATAGCTATGCATA+TGG - chr6.1:76861159-76861178 MS.gene061506:intron 35.0%
TCCCCACTAAATCCAAAATA+GGG - chr6.1:76862464-76862483 MS.gene061506:intron 35.0%
TGACAATGGAGCTGATTATT+GGG - chr6.1:76865690-76865709 MS.gene061506:CDS 35.0%
TGCTTGTGTTATGGTTGTTT+GGG + chr6.1:76863227-76863246 None:intergenic 35.0%
TGGTTATATCAGATTCCTTC+AGG - chr6.1:76863159-76863178 MS.gene061506:intron 35.0%
TTACTAGTGCTTACTGCTTA+GGG + chr6.1:76862580-76862599 None:intergenic 35.0%
TTAGGGTTGAGAAAGTTAGA+AGG + chr6.1:76860499-76860518 None:intergenic 35.0%
TTCTCAAGAAGAACCAAAGA+AGG - chr6.1:76865609-76865628 MS.gene061506:CDS 35.0%
TTTACTAGTGCTTACTGCTT+AGG + chr6.1:76862581-76862600 None:intergenic 35.0%
! ACCCTAAGCTTTTCTCTTTA+AGG + chr6.1:76864525-76864544 None:intergenic 35.0%
! GATCCCTTTTATCTGAAAAG+TGG - chr6.1:76863794-76863813 MS.gene061506:intron 35.0%
! TCTGTCTTGTTAGAAGCTAT+TGG - chr6.1:76863139-76863158 MS.gene061506:intron 35.0%
! TGCAGAAACGTACTAGTTTA+TGG - chr6.1:76864940-76864959 MS.gene061506:CDS 35.0%
! TTCATTCCTTTTTCCTCTCT+TGG - chr6.1:76863306-76863325 MS.gene061506:intron 35.0%
! TTCTTACATTTGAGATCGGA+GGG - chr6.1:76863651-76863670 MS.gene061506:intron 35.0%
! TTTCTTACATTTGAGATCGG+AGG - chr6.1:76863650-76863669 MS.gene061506:intron 35.0%
!! AACATGGAAGCTTTTTCTCT+TGG + chr6.1:76861485-76861504 None:intergenic 35.0%
!! ACATCAACAAGAGAAGCATT+TGG + chr6.1:76861126-76861145 None:intergenic 35.0%
!! CTTGTTCTCAATTTCAGGTT+AGG - chr6.1:76862267-76862286 MS.gene061506:intron 35.0%
!! GATGAAGTTGGTGCATAATT+AGG + chr6.1:76860517-76860536 None:intergenic 35.0%
!! GTTCCCTATTTTGGATTTAG+TGG + chr6.1:76862470-76862489 None:intergenic 35.0%
!! TCATGCTCAACACTTTTTGT+AGG - chr6.1:76864363-76864382 MS.gene061506:intron 35.0%
!! TCCCTATTTTGGATTTAGTG+GGG + chr6.1:76862468-76862487 None:intergenic 35.0%
!! TCTGCATGATATTTTAGAGG+GGG - chr6.1:76863009-76863028 MS.gene061506:CDS 35.0%
!! TTCTCAATTTCAGGTTAGGA+AGG - chr6.1:76862271-76862290 MS.gene061506:intron 35.0%
!!! CAAACCCCTTCCTTTTTTTT+AGG + chr6.1:76865163-76865182 None:intergenic 35.0%
AAACACAAGGCAACAACATC+CGG - chr6.1:76863374-76863393 MS.gene061506:intron 40.0%
AAGAAGGACCTAAAGAGTAG+AGG - chr6.1:76865625-76865644 MS.gene061506:CDS 40.0%
AAGGGGCTTCCCTAAAAAAA+AGG - chr6.1:76865150-76865169 MS.gene061506:intron 40.0%
AAGTGTAACAGTTCTGCATC+TGG - chr6.1:76861929-76861948 MS.gene061506:intron 40.0%
AATGATATCGAGTGCTCTTG+GGG - chr6.1:76862683-76862702 MS.gene061506:intron 40.0%
AATTGAAGGGGTGGAATTGT+GGG - chr6.1:76861042-76861061 MS.gene061506:intron 40.0%
ACAATGGATCAGGAAACACA+AGG - chr6.1:76863361-76863380 MS.gene061506:intron 40.0%
AGAAGGACCTAAAGAGTAGA+GGG - chr6.1:76865626-76865645 MS.gene061506:CDS 40.0%
ATCACATCGTCATATTGACG+AGG + chr6.1:76864474-76864493 None:intergenic 40.0%
ATTCCTTCAGGGTCAAATTG+AGG - chr6.1:76863171-76863190 MS.gene061506:intron 40.0%
ATTGCAGCAAAATGGAGTAG+TGG + chr6.1:76860897-76860916 None:intergenic 40.0%
CAACATGTGATTTCTGCCAA+AGG + chr6.1:76864737-76864756 None:intergenic 40.0%
CCATACTTGAACAATGGATC+AGG - chr6.1:76863351-76863370 MS.gene061506:intron 40.0%
CCTGATCCATTGTTCAAGTA+TGG + chr6.1:76863354-76863373 None:intergenic 40.0%
CTACTCTTTAGGTCCTTCTT+TGG + chr6.1:76865625-76865644 None:intergenic 40.0%
CTAGGAATATGACAGTGGTA+TGG - chr6.1:76863086-76863105 MS.gene061506:intron 40.0%
GAAAATAAAGGAGGAGGTTG+TGG + chr6.1:76860472-76860491 None:intergenic 40.0%
GGAACAAAGTCTCATCAACT+TGG + chr6.1:76864504-76864523 None:intergenic 40.0%
GGAGATGAAAATAAAGGAGG+AGG + chr6.1:76860478-76860497 None:intergenic 40.0%
GGCTTCCCTAAAAAAAAGGA+AGG - chr6.1:76865154-76865173 MS.gene061506:intron 40.0%
GGTGGAACATCAATAACATG+AGG - chr6.1:76860437-76860456 MS.gene061506:CDS 40.0%
GTGCTTGTGTTATGGTTGTT+TGG + chr6.1:76863228-76863247 None:intergenic 40.0%
TAATTGAAGGGGTGGAATTG+TGG - chr6.1:76861041-76861060 MS.gene061506:intron 40.0%
TCACATCGTCATATTGACGA+GGG + chr6.1:76864473-76864492 None:intergenic 40.0%
TCCACATGAATGCAAGAATG+TGG - chr6.1:76864670-76864689 MS.gene061506:intron 40.0%
TCCACATTCTTGCATTCATG+TGG + chr6.1:76864674-76864693 None:intergenic 40.0%
TGATGGCTAGTAACCCTAAT+TGG - chr6.1:76860416-76860435 MS.gene061506:CDS 40.0%
TGGGGCAATGAAAAAAGCTA+GGG - chr6.1:76861952-76861971 MS.gene061506:intron 40.0%
TTAACAGCGTGCTTGTGTTA+TGG + chr6.1:76863236-76863255 None:intergenic 40.0%
TTCCTCTCTTGGAATTATGC+AGG - chr6.1:76863317-76863336 MS.gene061506:intron 40.0%
TTGCAGCAAAATGGAGTAGT+GGG + chr6.1:76860896-76860915 None:intergenic 40.0%
! CTACAAGTTGGGAATGACAA+TGG - chr6.1:76865676-76865695 MS.gene061506:CDS 40.0%
! TTCTTACATTTGAGACCGGA+GGG + chr6.1:76863534-76863553 None:intergenic 40.0%
! TTTCTTACATTTGAGACCGG+AGG + chr6.1:76863535-76863554 None:intergenic 40.0%
!! CTGCATGATATTTTAGAGGG+GGG - chr6.1:76863010-76863029 MS.gene061506:CDS 40.0%
!! TACATGAGTTGTTGACTCCA+TGG + chr6.1:76860589-76860608 None:intergenic 40.0%
!! TGCATGATATTTTAGAGGGG+GGG - chr6.1:76863011-76863030 MS.gene061506:CDS 40.0%
!!! TTTTTGGCTAATTGAAGGGG+TGG - chr6.1:76861033-76861052 MS.gene061506:intron 40.0%
ACCACTAGATCGATCTTCTG+AGG - chr6.1:76861278-76861297 MS.gene061506:intron 45.0%
ACCTCAGAAGATCGATCTAG+TGG + chr6.1:76861282-76861301 None:intergenic 45.0%
AGCCTGCATAATTCCAAGAG+AGG + chr6.1:76863322-76863341 None:intergenic 45.0%
AGGAGTTGGAAGTTTCTCCA+TGG + chr6.1:76862025-76862044 None:intergenic 45.0%
ATCCAAAGGATTACCTGACC+AGG + chr6.1:76865055-76865074 None:intergenic 45.0%
ATGGGGAAACAAGCTGATGA+AGG + chr6.1:76862322-76862341 None:intergenic 45.0%
ATTGAAGGGGTGGAATTGTG+GGG - chr6.1:76861043-76861062 MS.gene061506:intron 45.0%
CAGGTTAGGAAGGAGAAGTT+AGG - chr6.1:76862281-76862300 MS.gene061506:intron 45.0%
CCAGCTCAATTGCAGCAAAA+TGG + chr6.1:76860905-76860924 None:intergenic 45.0%
GACAATAGTTACTCCCCACA+TGG + chr6.1:76862081-76862100 None:intergenic 45.0%
GACACAACCCTCTACTCTTT+AGG + chr6.1:76865636-76865655 None:intergenic 45.0%
GCTTGTTTCCCCATTTGGAA+AGG - chr6.1:76862328-76862347 MS.gene061506:intron 45.0%
GGTGACTAGGAATATGACAG+TGG - chr6.1:76863081-76863100 MS.gene061506:intron 45.0%
GTAACAGTTCTGCATCTGGT+GGG - chr6.1:76861933-76861952 MS.gene061506:intron 45.0%
GTGGGGCAATGAAAAAAGCT+AGG - chr6.1:76861951-76861970 MS.gene061506:intron 45.0%
GTGGGGGAAGAAGATAAGAT+TGG - chr6.1:76861060-76861079 MS.gene061506:intron 45.0%
TAACAGTTCTGCATCTGGTG+GGG - chr6.1:76861934-76861953 MS.gene061506:intron 45.0%
TCACCTCAATTTGACCCTGA+AGG + chr6.1:76863177-76863196 None:intergenic 45.0%
TCAGAAGATCGATCTAGTGG+TGG + chr6.1:76861279-76861298 None:intergenic 45.0%
TCCAAAGGATTACCTGACCA+GGG + chr6.1:76865054-76865073 None:intergenic 45.0%
TGGCTAGTAACCCTAATTGG+TGG - chr6.1:76860419-76860438 MS.gene061506:CDS 45.0%
TGGGGAAACAAGCTGATGAA+GGG + chr6.1:76862321-76862340 None:intergenic 45.0%
TGTAACAGTTCTGCATCTGG+TGG - chr6.1:76861932-76861951 MS.gene061506:intron 45.0%
TGTTTATTCCCTGAAGACCC+TGG - chr6.1:76865034-76865053 MS.gene061506:CDS 45.0%
! CATCAGCTTGTTTCCCCATT+TGG - chr6.1:76862323-76862342 MS.gene061506:intron 45.0%
! CCATTTTGCTGCAATTGAGC+TGG - chr6.1:76860902-76860921 MS.gene061506:intron 45.0%
! TGTATGGTGGAGCAAAAGCT+TGG - chr6.1:76861658-76861677 MS.gene061506:intron 45.0%
!! AGTTGTTGACTCCATGGTTC+GGG + chr6.1:76860583-76860602 None:intergenic 45.0%
!! ATGATATTTTAGAGGGGGGG+GGG - chr6.1:76863014-76863033 MS.gene061506:intron 45.0%
!! CATGATATTTTAGAGGGGGG+GGG - chr6.1:76863013-76863032 MS.gene061506:CDS 45.0%
!! GAGTTGTTGACTCCATGGTT+CGG + chr6.1:76860584-76860603 None:intergenic 45.0%
!! GCATGATATTTTAGAGGGGG+GGG - chr6.1:76863012-76863031 MS.gene061506:CDS 45.0%
!! GCTCTTGGGGCACTTTTTAA+GGG - chr6.1:76862696-76862715 MS.gene061506:intron 45.0%
!! TGCTCTTGGGGCACTTTTTA+AGG - chr6.1:76862695-76862714 MS.gene061506:intron 45.0%
!! TAATTAAATAATTGAATTAA+TGG - chr6.1:76863483-76863502 MS.gene061506:intron 5.0%
!! TAATTAAATATTATAAAACA+TGG + chr6.1:76861501-76861520 None:intergenic 5.0%
!!! TTATTAATTTTTCTATAATA+TGG - chr6.1:76860800-76860819 MS.gene061506:intron 5.0%
AAAGGAGGAGGTTGTGGAGA+TGG + chr6.1:76860466-76860485 None:intergenic 50.0%
ACCCTGGTCAGGTAATCCTT+TGG - chr6.1:76865050-76865069 MS.gene061506:CDS 50.0%
ATCAAGAGCTTCCCGAACCA+TGG - chr6.1:76860569-76860588 MS.gene061506:intron 50.0%
ATTACCTGACCAGGGTCTTC+AGG + chr6.1:76865046-76865065 None:intergenic 50.0%
GAAGAGGAAAGCAGCTGAAG+AGG - chr6.1:76865302-76865321 MS.gene061506:intron 50.0%
TTACCTGACCAGGGTCTTCA+GGG + chr6.1:76865045-76865064 None:intergenic 50.0%
TTGAAGGGGTGGAATTGTGG+GGG - chr6.1:76861044-76861063 MS.gene061506:intron 50.0%
!! TGATATTTTAGAGGGGGGGG+GGG - chr6.1:76863015-76863034 MS.gene061506:intron 50.0%
ATTCCCTGAAGACCCTGGTC+AGG - chr6.1:76865039-76865058 MS.gene061506:CDS 55.0%
CAACACGGTGATCTGTGTCG+CGG - chr6.1:76861773-76861792 MS.gene061506:intron 55.0%
GATTATTGGGCACCTGCCCT+AGG - chr6.1:76865703-76865722 MS.gene061506:CDS 55.0%
!! ATATTTTAGAGGGGGGGGGG+GGG - chr6.1:76863017-76863036 MS.gene061506:intron 55.0%
!! GATATTTTAGAGGGGGGGGG+GGG - chr6.1:76863016-76863035 MS.gene061506:intron 55.0%
ACCGAAAGCCTCCTCCTCCT+AGG + chr6.1:76865723-76865742 None:intergenic 60.0%
CCCTAGGAGGAGGAGGCTTT+CGG - chr6.1:76865719-76865738 MS.gene061506:CDS 60.0%
CCGAAAGCCTCCTCCTCCTA+GGG + chr6.1:76865722-76865741 None:intergenic 60.0%
GGAGGAGGTTGTGGAGATGG+TGG + chr6.1:76860463-76860482 None:intergenic 60.0%
TATTGGGCACCTGCCCTAGG+AGG - chr6.1:76865706-76865725 MS.gene061506:CDS 60.0%
!! TATTTTAGAGGGGGGGGGGG+GGG - chr6.1:76863018-76863037 MS.gene061506:intron 60.0%
AAGCCTCCTCCTCCTAGGGC+AGG + chr6.1:76865718-76865737 None:intergenic 65.0%
!! ATTTTAGAGGGGGGGGGGGG+GGG - chr6.1:76863019-76863038 MS.gene061506:intron 65.0%
GCACCTGCCCTAGGAGGAGG+AGG - chr6.1:76865712-76865731 MS.gene061506:CDS 70.0%
TGGGCACCTGCCCTAGGAGG+AGG - chr6.1:76865709-76865728 MS.gene061506:CDS 70.0%
!! TTTTAGAGGGGGGGGGGGGG+GGG - chr6.1:76863020-76863039 MS.gene061506:intron 70.0%
TTTAGAGGGGGGGGGGGGGG+GGG - chr6.1:76863021-76863040 MS.gene061506:intron 75.0%
! TTAGAGGGGGGGGGGGGGGG+GGG - chr6.1:76863022-76863041 MS.gene061506:intron 80.0%
! AGGGGGGGGGGGGGGGGGGC+AGG - chr6.1:76863026-76863045 MS.gene061506:intron 95.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 76860415 76865744 76860415 ID=MS.gene061506
chr6.1 mRNA 76860415 76865744 76860415 ID=MS.gene061506.t1;Parent=MS.gene061506
chr6.1 exon 76865554 76865744 76865554 ID=MS.gene061506.t1.exon1;Parent=MS.gene061506.t1
chr6.1 CDS 76865554 76865744 76865554 ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1
chr6.1 exon 76864860 76865109 76864860 ID=MS.gene061506.t1.exon2;Parent=MS.gene061506.t1
chr6.1 CDS 76864860 76865109 76864860 ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1
chr6.1 exon 76864153 76864227 76864153 ID=MS.gene061506.t1.exon3;Parent=MS.gene061506.t1
chr6.1 CDS 76864153 76864227 76864153 ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1
chr6.1 exon 76863810 76863875 76863810 ID=MS.gene061506.t1.exon4;Parent=MS.gene061506.t1
chr6.1 CDS 76863810 76863875 76863810 ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1
chr6.1 exon 76862967 76863032 76862967 ID=MS.gene061506.t1.exon5;Parent=MS.gene061506.t1
chr6.1 CDS 76862967 76863032 76862967 ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1
chr6.1 exon 76862764 76862820 76862764 ID=MS.gene061506.t1.exon6;Parent=MS.gene061506.t1
chr6.1 CDS 76862764 76862820 76862764 ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1
chr6.1 exon 76861099 76861143 76861099 ID=MS.gene061506.t1.exon7;Parent=MS.gene061506.t1
chr6.1 CDS 76861099 76861143 76861099 ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1
chr6.1 exon 76860836 76860877 76860836 ID=MS.gene061506.t1.exon8;Parent=MS.gene061506.t1
chr6.1 CDS 76860836 76860877 76860836 ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1
chr6.1 exon 76860415 76860552 76860415 ID=MS.gene061506.t1.exon9;Parent=MS.gene061506.t1
chr6.1 CDS 76860415 76860552 76860415 ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1
Gene Sequence

>MS.gene061506

ATGATGGCTAGTAACCCTAATTGGTGGAACATCAATAACATGAGGCCACCATCTCCACAACCTCCTCCTTTATTTTCATCTCCTTCTAACTTTCTCAACCCTAATTATGCACCAACTTCATCTTTTCTTCCTTTTTCTTCATGGCATGAAAATCATCAAGAGCTTCCCGAACCATGGAGTCAACAACTCATGTATTTCTCTCTCTCTTACAATAATCACTATTTTTTTTTTAAGGGACAACAATCACTACTAAATTAGTAAGGGGAATTTAGAGACAGAAAATGAAAAATCACTCTAAATCTGTCAATAAATTTAGTCACTAAAGTTAGTGACAAGAGATTTAGAGGGGAATTTCAATTTTTTTATGACTAATTTTTGTAACTGATTATTAATTTTTCTATAATATGGATATAGACTTGTTCTATAACCATTATGGTGAATATTATGCATGCATGTTTGTGTATTTCGTATTGTGATTCCCACTACTCCATTTTGCTGCAATTGAGCTGGAAAATCTCTTGTATTTTCTAATAAATAGATCTATTTAGAAGTTTCAAAAAGTTAAAATTCAAACGTATGTGTTTGGTTAATTAGGAAGGATCAAAATCTAATTAATTGTTTTTGGCTAATTGAAGGGGTGGAATTGTGGGGGAAGAAGATAAGATTGGTATGAGCCAATTTCAAAATCAAATGCTAATAAGTCAAGCTCCAAATGCTTCTCTTGTTGATGTTAAACAAGAAAACTCAGGAAATAGCTATGCATATGGACATGGAAATGAAGAACTTAATTCATGTGTGACAAGTTTCAATAACAACATGTTGGATTTCACTAACAACAATAGTAATATAGATGTGAGGCATCCACCACTAGATCGATCTTCTGAGGTATGTAAAAGAATAGATTTCTTAATGATCTAATTTGATTATGAAAAAAGCTTCTTCATTAAGAATCCATGGCTAGACTTTTTATGAATTCATGTACCTTTTTTTTCTTGGTCAATGAGTTGCACAAATTAACCTCACTTTTCAAGAAACTTTACCAATATTATCACCTTTAATTAATTTGGCCAAGAGAAAAAGCTTCCATGTTTTATAATATTTAATTAAAAATCATATTTTTATTTCCAATATAAATTATATATGCAATCTCAAAAGGCAAGAGCACCCAACCTTTCTTTAGTTTAAAATCATAAGGGGAACTTTCATTCTAATTTCTTCATTTTTTTTGACAAAAATTTCTTCATGTATGGTGGAGCAAAAGCTTGGTAAACTTGTTTCTATTATCTTCTTTAGAGACATAATTAATTTTGCATTTTTTTCATCTTTACATTTCAGTCGTTCGTTCAAATTTTTCATAGCAACACGGTGATCTGTGTCGCGGCATCAGTATCTTTATTTTACATTAGTTCATATGAAATATGGAATATGAAATATAGATGTAAATTACTTTATTATTTTTGGAAATTCAGTAAGAATTAAATATAATTAATTAACCAAAATTTCTTTCATTCTACAAGTGTAACAGTTCTGCATCTGGTGGGGCAATGAAAAAAGCTAGGGTTCAACAATCTACAACTCAAACTACTTTCAAGGTATAATGCAAACTTCCATGGAGAAACTTCCAACTCCTTAACTCTCTTTCATGCATACAAACATACAAATACCATGTGGGGAGTAACTATTGTCTTTCTTGGTTTGTCCAATTCTCAATTGCAATTATTCTTTATCTACTTTGTTTCATCAATTTACTATCATAGAAAGAAATAAAAAAGAATCAAAATGAGCCTAATACAACAACAAAATATAGCCAACTTTTTAGCATGTGCACTTGTCCTACACGTTTTCATGATATCTTGTTCTCAATTTCAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACTGCCCTTCATCAGCTTGTTTCCCCATTTGGAAAGGTAATTAATTAATCCTAGTATATTCAATAAGAAATTTATTATATGCTTTTTAATAGAAAGGCATTAACATTTTAATTTTCTTTATACAGAATATTTTATAATAAAAGTTTCTAATCCCCACTAAATCCAAAATAGGGAACAAAAAAAAACTTTTAAAAAAAATTGTTATAAATTAAAGTGGCAATAATTGTTATTTTACAACAATAGAAACACTAAAATAGTTGTAACCCTAAGCAGTAAGCACTAGTAAAAATTTATTTACCATCACTATTAGAGAAAAAATTATCACTAAAAGTTATAGACATAAAATGAAATTGCTATTTAATTTAGAAAAATGATATCGAGTGCTCTTGGGGCACTTTTTAAGGGCATTTAAATAGTATGTTTTTGTGAAAATATGTGTAGTATTGCATTGAAAATTAAAATAATTTATTTTTAAAAAAATATTTTTTTATTTGAAATGCTTAATGAGTGTTCTGTAAACACCCGTTAACACTATCCTTTAATTTATTTGCTACTACATTCGAGGAGAAAATTAATTAGAGAAAAATTTATATTTTCAATCTCTATTTTTTTGTTGTTAGTTTAGTTTCTTAATAACATATTGTTATTTATAAGTAAAAATATCGTTAAATTTTTCTTTTTCTATCTTCTATTTTTCTGCATGATATTTTAGAGGGGGGGGGGGGGGGGGGCAGGTTACTTAATTTATTGCATTATATATAGAAAGTGGTGACTAGGAATATGACAGTGGTATGGTATATTTCACTTTTTCAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTTCAGGGTCAAATTGAGGTGATCGATGATTCTTTCTTCACTTTATTTTCCCAAACAACCATAACACAAGCACGCTGTTAAAGTTCCATTTCACATTTCACATAACAAGTTCTTAAAATGCATGCATTTTTTTCATTCCTTTTTCCTCTCTTGGAATTATGCAGGCTCTTAGCTTACCATACTTGAACAATGGATCAGGAAACACAAGGCAACAACATCCGGTAAGAATTAATATGGTCAATTACTTGTCATAATTTCCCTCAAAAAAATTACTTGTCATAATTGTTTCACACATATTAAAAAAAAATTAATTAAATAATTGAATTAATGGTTAACGAACATCACTAAATAATACTCCCTCCGGTCTCAAATGTAAGAAACTTTTCACTTTTTAGATTCATTCAATAAATTATGTATGTGGTATTTATTATAGACCACATAAATCATTTATTGAATGAACCAAAAAAGTGAAAAATTTCTTACATTTGAGATCGGAGGGAGTAGATGATTAACAAACTTCACAAAATAACAAATCATTCAAGATAATCAGAGTTCAATTCTTAGATGGAACCATTTTCGATTGACTTTACTTATCTTTTAGTCGAACTTTAGATTAGCAGATCCCTTTTATCTGAAAAGTGGAATGTTAACACCCAAATAAAAAGTTATAAACTAATGAGAGAAAATTACACTTTTACCAAATTTTTTTTTTGAAGCAACACTTTTACCAATTATTCATTTGTTCGATTCTTATTATAAAAAATGCAAAGTTAAAAATAATAACTTGAGAATGATACATATATTGTTAATTAGAGGGTATAAATGGTAAAATGTAATTAATACTCCCTTTAATCTTTTTTATAAAAGACAAATGAGTCAATAAAAGTTGATGTAATCGATTCATAATAAAGATCAAATATATCAATCTTGGTTGACTTTATAAAAAAAAACCGGAAGAAGTATTACTTTAAAAACTGGAAAATGACAATTATTTTAGGACACTTTTTACTTTTTTTTTTTTTTTGCAAATACAACAATTATCATGGATAATATGGAGTATTAATTAAAAAACTTGCATCTTAGTGCTCTAATTTTGAATATAAATAACCAAATGGCTAAGCATGAAATTTTTATGATGCTAACACTAACTCTAACACTTTTAACACACAATTTCTTGTTAGCTGAAAATCATGCTCAACACTTTTTGTAGGCTTATTTATAATGTGATGGAACCCACATAAATATTTCATCAAATTAGAGAGTAAATATTCAAAATAAATTGGGTATGTTGCTAGCCCTCGTCAATATGACGATGTGATCGTTGATCCAAGTTGATGAGACTTTGTTCCTTAAAGAGAAAAGCTTAGGGTTCGATCGTTAACATTTATGAATAGAGAAGCCTCTAATATCCTCGACAATATATTTTGATAGTTGTACGTAAAATTAAAATACTTTAGTTTATAGACAGAGAAGTGCTAAATATTAGGAAAGGAACTCCACATGAATGCAAGAATGTGGAATTGTAGTATCTTAAAAGAACAAAAAAAATGTAGTTTGTTCCTTTGGCAGAAATCACATGTTGTGTTAAAATCAAGGGGTCAAAATTGTTTCGTGTGTGTCTTTGGCCATACCTTCGTAAAAATAAGAATTATTCAAAAACATAAAGTCATTTCTCATTTTCTTAAGAAAGAATAATAACTTTCTCTCTCTTGTTTTCACTTTCATCTTCTTTGAATTCTTGCTTCATATAGTTTGATCTTGCATGTGCAGAAACGTACTAGTTTATGGATAATTATGTGGTACTAATTGAGTGATGATTGTAATTATTTAATCTTAATTAGGTTCAAGGAGAGAATAATTGTTTATTCCCTGAAGACCCTGGTCAGGTAATCCTTTGGATCCATTAGAACTAAAGAGAAATGTTACCAGCTTTAGCAGATTTTTAATATAACTCAAATATATGAATAATCAAAACAAGGGGCTTCCCTAAAAAAAAGGAAGGGGTTTGCTTTATAGCATCACTAATTAATTACAAATTAATTAAAAAGTTGAATGCTTATTAATTAATTAATTAAATTCTAATTTTAATTTACTTCTCTGATTACAGCTCCTAAATGAAAATGGTTTGAAGAGGAAAGCAGCTGAAGAGGTAAACAAATTTGTTCTCAAAATACAAATTCAATAAATTTTTGTTTCTTTTCTTTTATAATTATTAATTATCTCTATTAAAAAAGTTGTCTTACCAATAAAAATTATAGACCAAAAAAATATTTTGTCTTTGATTTTATCATTAGAGACATCAACATTATTTTTCCTCCAAGTCTAATTTTCATCAGCAATTCAAGTTTTTCTAGTATAGTCAAAATAAAAATTGAATAAACATCTTTTTTTAATTCTTATGTGTCTTTTTCATGTTGGCAATAACTAATTAGGTTTCTCAAGAAGAACCAAAGAAGGACCTAAAGAGTAGAGGGTTGTGTCTTGTTCCAGTATCATGTACACTACAAGTTGGGAATGACAATGGAGCTGATTATTGGGCACCTGCCCTAGGAGGAGGAGGCTTTCGGTAG

Protein sequence

>MS.gene061506.t1

MMASNPNWWNINNMRPPSPQPPPLFSSPSNFLNPNYAPTSSFLPFSSWHENHQELPEPWSQQLMGGIVGEEDKIGMSQFQNQMLISQAPNASLVDVKQENSGNSYAYGHGNEELNSCVTSFNNNMLDFTNNNSNIDVRHPPLDRSSECNSSASGGAMKKARVQQSTTQTTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSLPYLNNGSGNTRQQHPVQGENNCLFPEDPGQLLNENGLKRKAAEEVSQEEPKKDLKSRGLCLVPVSCTLQVGNDNGADYWAPALGGGGFR