Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061506.t1 | XP_013453115.1 | 92.9 | 308 | 20 | 1 | 1 | 306 | 14 | 321 | 2.80E-159 | 571.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061506.t1 | Q8S3D1 | 42.9 | 392 | 140 | 11 | 1 | 308 | 15 | 406 | 2.3e-64 | 247.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061506.t1 | I3S6F8 | 92.9 | 308 | 20 | 1 | 1 | 306 | 14 | 321 | 2.0e-159 | 571.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049150 | MS.gene061506 | 0.835208 | 1.92E-56 | -1.69E-46 |
MS.gene049153 | MS.gene061506 | 0.830909 | 2.25E-55 | -1.69E-46 |
MS.gene049993 | MS.gene061506 | 0.824499 | 7.81E-54 | -1.69E-46 |
MS.gene050426 | MS.gene061506 | -0.80619 | 9.28E-50 | -1.69E-46 |
MS.gene050442 | MS.gene061506 | 0.828724 | 7.67E-55 | -1.69E-46 |
MS.gene050680 | MS.gene061506 | 0.837131 | 6.23E-57 | -1.69E-46 |
MS.gene050750 | MS.gene061506 | 0.811605 | 6.44E-51 | -1.69E-46 |
MS.gene050953 | MS.gene061506 | 0.811516 | 6.73E-51 | -1.69E-46 |
MS.gene051373 | MS.gene061506 | 0.802067 | 6.69E-49 | -1.69E-46 |
MS.gene051568 | MS.gene061506 | 0.834107 | 3.63E-56 | -1.69E-46 |
MS.gene051860 | MS.gene061506 | 0.828452 | 8.92E-55 | -1.69E-46 |
MS.gene051983 | MS.gene061506 | 0.825761 | 3.93E-54 | -1.69E-46 |
MS.gene052011 | MS.gene061506 | -0.833767 | 4.41E-56 | -1.69E-46 |
MS.gene052077 | MS.gene061506 | 0.802853 | 4.61E-49 | -1.69E-46 |
MS.gene052159 | MS.gene061506 | 0.804522 | 2.07E-49 | -1.69E-46 |
MS.gene052190 | MS.gene061506 | 0.804217 | 2.40E-49 | -1.69E-46 |
MS.gene052333 | MS.gene061506 | 0.852844 | 3.54E-61 | -1.69E-46 |
MS.gene053166 | MS.gene061506 | 0.828874 | 7.05E-55 | -1.69E-46 |
MS.gene053176 | MS.gene061506 | 0.839442 | 1.58E-57 | -1.69E-46 |
MS.gene053494 | MS.gene061506 | 0.843413 | 1.42E-58 | -1.69E-46 |
MS.gene053584 | MS.gene061506 | 0.804357 | 2.25E-49 | -1.69E-46 |
MS.gene054183 | MS.gene061506 | 0.884728 | 1.50E-71 | -1.69E-46 |
MS.gene054291 | MS.gene061506 | -0.824841 | 6.49E-54 | -1.69E-46 |
MS.gene054349 | MS.gene061506 | 0.809498 | 1.84E-50 | -1.69E-46 |
MS.gene054405 | MS.gene061506 | 0.815782 | 7.75E-52 | -1.69E-46 |
MS.gene054468 | MS.gene061506 | 0.823366 | 1.44E-53 | -1.69E-46 |
MS.gene054548 | MS.gene061506 | 0.816899 | 4.36E-52 | -1.69E-46 |
MS.gene054559 | MS.gene061506 | 0.812788 | 3.55E-51 | -1.69E-46 |
MS.gene05510 | MS.gene061506 | 0.808846 | 2.53E-50 | -1.69E-46 |
MS.gene055356 | MS.gene061506 | 0.818321 | 2.08E-52 | -1.69E-46 |
MS.gene055358 | MS.gene061506 | 0.822254 | 2.61E-53 | -1.69E-46 |
MS.gene055367 | MS.gene061506 | 0.808167 | 3.54E-50 | -1.69E-46 |
MS.gene055701 | MS.gene061506 | 0.888607 | 5.08E-73 | -1.69E-46 |
MS.gene05595 | MS.gene061506 | 0.819894 | 9.14E-53 | -1.69E-46 |
MS.gene056506 | MS.gene061506 | 0.811086 | 8.34E-51 | -1.69E-46 |
MS.gene056723 | MS.gene061506 | 0.821279 | 4.39E-53 | -1.69E-46 |
MS.gene056979 | MS.gene061506 | 0.816219 | 6.19E-52 | -1.69E-46 |
MS.gene057156 | MS.gene061506 | -0.811537 | 6.66E-51 | -1.69E-46 |
MS.gene05761 | MS.gene061506 | 0.813657 | 2.29E-51 | -1.69E-46 |
MS.gene057863 | MS.gene061506 | 0.808692 | 2.73E-50 | -1.69E-46 |
MS.gene058435 | MS.gene061506 | 0.800769 | 1.23E-48 | -1.69E-46 |
MS.gene05872 | MS.gene061506 | 0.806639 | 7.46E-50 | -1.69E-46 |
MS.gene059160 | MS.gene061506 | 0.812523 | 4.06E-51 | -1.69E-46 |
MS.gene059161 | MS.gene061506 | 0.834011 | 3.83E-56 | -1.69E-46 |
MS.gene059162 | MS.gene061506 | 0.813431 | 2.57E-51 | -1.69E-46 |
MS.gene059285 | MS.gene061506 | 0.817037 | 4.06E-52 | -1.69E-46 |
MS.gene059420 | MS.gene061506 | 0.834793 | 2.44E-56 | -1.69E-46 |
MS.gene059609 | MS.gene061506 | 0.906474 | 1.43E-80 | -1.69E-46 |
MS.gene059958 | MS.gene061506 | 0.806942 | 6.44E-50 | -1.69E-46 |
MS.gene060322 | MS.gene061506 | 0.80055 | 1.37E-48 | -1.69E-46 |
MS.gene060802 | MS.gene061506 | 0.85381 | 1.87E-61 | -1.69E-46 |
MS.gene061114 | MS.gene061506 | -0.873617 | 1.28E-67 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061506.t1 | MTR_6g488100 | 95.820 | 311 | 10 | 2 | 1 | 309 | 14 | 323 | 0.0 | 610 |
MS.gene061506.t1 | MTR_6g488100 | 94.620 | 316 | 9 | 3 | 1 | 309 | 14 | 328 | 0.0 | 605 |
MS.gene061506.t1 | MTR_6g488100 | 94.862 | 253 | 11 | 1 | 1 | 251 | 14 | 266 | 1.18e-165 | 461 |
MS.gene061506.t1 | MTR_6g488100 | 94.979 | 239 | 10 | 1 | 1 | 237 | 14 | 252 | 6.42e-154 | 431 |
MS.gene061506.t1 | MTR_8g103065 | 61.471 | 340 | 77 | 15 | 1 | 306 | 15 | 334 | 1.29e-117 | 342 |
MS.gene061506.t1 | MTR_2g101520 | 48.837 | 344 | 122 | 12 | 1 | 306 | 1 | 328 | 1.80e-89 | 270 |
MS.gene061506.t1 | MTR_8g103065 | 56.654 | 263 | 64 | 13 | 1 | 233 | 15 | 257 | 8.27e-77 | 236 |
MS.gene061506.t1 | MTR_2g011070 | 46.707 | 167 | 60 | 4 | 143 | 308 | 276 | 414 | 9.47e-38 | 139 |
MS.gene061506.t1 | MTR_2g081820 | 44.509 | 173 | 70 | 2 | 133 | 305 | 287 | 433 | 3.95e-37 | 137 |
MS.gene061506.t1 | MTR_2g081820 | 44.509 | 173 | 70 | 2 | 133 | 305 | 288 | 434 | 4.41e-37 | 137 |
MS.gene061506.t1 | MTR_3g112170 | 40.933 | 193 | 75 | 4 | 129 | 305 | 283 | 452 | 5.69e-36 | 134 |
MS.gene061506.t1 | MTR_8g466800 | 44.172 | 163 | 65 | 3 | 143 | 305 | 305 | 441 | 2.44e-34 | 130 |
MS.gene061506.t1 | MTR_1g107185 | 49.655 | 145 | 58 | 2 | 158 | 302 | 138 | 267 | 2.18e-33 | 124 |
MS.gene061506.t1 | MTR_1g094085 | 43.478 | 161 | 62 | 4 | 152 | 309 | 399 | 533 | 7.78e-31 | 121 |
MS.gene061506.t1 | MTR_4g087300 | 37.158 | 183 | 79 | 3 | 119 | 301 | 4 | 150 | 7.26e-26 | 101 |
MS.gene061506.t1 | MTR_4g087300 | 37.975 | 158 | 63 | 2 | 144 | 301 | 5 | 127 | 1.61e-24 | 97.1 |
MS.gene061506.t1 | MTR_4g087300 | 37.158 | 183 | 77 | 4 | 119 | 301 | 4 | 148 | 7.48e-24 | 95.9 |
MS.gene061506.t1 | MTR_8g466800 | 54.945 | 91 | 41 | 0 | 143 | 233 | 305 | 395 | 2.80e-22 | 96.3 |
MS.gene061506.t1 | MTR_1g094085 | 38.053 | 113 | 43 | 3 | 198 | 309 | 423 | 509 | 1.89e-14 | 73.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061506.t1 | AT4G29100 | 45.340 | 397 | 125 | 14 | 1 | 309 | 15 | 407 | 4.06e-88 | 269 |
MS.gene061506.t1 | AT2G20100 | 62.722 | 169 | 53 | 2 | 146 | 304 | 190 | 358 | 6.88e-63 | 203 |
MS.gene061506.t1 | AT4G29100 | 41.441 | 333 | 109 | 13 | 1 | 251 | 15 | 343 | 4.41e-55 | 182 |
MS.gene061506.t1 | AT2G20100 | 49.302 | 215 | 53 | 3 | 146 | 304 | 190 | 404 | 1.18e-53 | 181 |
MS.gene061506.t1 | AT2G20100 | 63.303 | 109 | 37 | 1 | 146 | 251 | 190 | 298 | 2.01e-35 | 130 |
MS.gene061506.t1 | AT2G20100 | 63.303 | 109 | 37 | 1 | 146 | 251 | 190 | 298 | 2.01e-35 | 130 |
MS.gene061506.t1 | AT3G19500 | 47.973 | 148 | 49 | 3 | 158 | 305 | 140 | 259 | 5.93e-33 | 122 |
MS.gene061506.t1 | AT1G61660 | 46.753 | 154 | 58 | 3 | 156 | 309 | 261 | 390 | 9.42e-33 | 125 |
MS.gene061506.t1 | AT1G61660 | 46.753 | 154 | 58 | 3 | 156 | 309 | 264 | 393 | 1.15e-32 | 124 |
MS.gene061506.t1 | AT1G61660 | 46.753 | 154 | 58 | 3 | 156 | 309 | 264 | 393 | 1.15e-32 | 124 |
MS.gene061506.t1 | AT3G20640 | 46.108 | 167 | 58 | 5 | 144 | 305 | 250 | 389 | 1.30e-32 | 124 |
MS.gene061506.t1 | AT3G20640 | 46.108 | 167 | 58 | 5 | 144 | 305 | 312 | 451 | 2.88e-32 | 124 |
MS.gene061506.t1 | AT1G27660 | 50.704 | 142 | 37 | 3 | 150 | 286 | 310 | 423 | 3.42e-32 | 124 |
MS.gene061506.t1 | AT2G31730 | 43.511 | 131 | 39 | 2 | 172 | 302 | 39 | 134 | 5.21e-27 | 103 |
MS.gene061506.t1 | AT2G31730 | 43.511 | 131 | 39 | 2 | 172 | 302 | 39 | 134 | 5.21e-27 | 103 |
MS.gene061506.t1 | AT4G21340 | 45.638 | 149 | 56 | 5 | 143 | 288 | 161 | 287 | 1.93e-26 | 106 |
MS.gene061506.t1 | AT4G05170 | 34.746 | 236 | 111 | 8 | 51 | 284 | 76 | 270 | 6.19e-26 | 104 |
MS.gene061506.t1 | AT4G05170 | 34.746 | 236 | 111 | 8 | 51 | 284 | 94 | 288 | 7.71e-26 | 105 |
MS.gene061506.t1 | AT4G05170 | 46.154 | 130 | 51 | 3 | 157 | 284 | 40 | 152 | 2.81e-25 | 100 |
MS.gene061506.t1 | AT4G05170 | 46.154 | 130 | 51 | 3 | 157 | 284 | 133 | 245 | 5.72e-25 | 101 |
MS.gene061506.t1 | AT1G05710 | 41.985 | 131 | 41 | 2 | 172 | 302 | 29 | 124 | 1.03e-24 | 97.4 |
MS.gene061506.t1 | AT1G05710 | 41.985 | 131 | 41 | 2 | 172 | 302 | 37 | 132 | 1.31e-24 | 97.4 |
MS.gene061506.t1 | AT1G05710 | 41.985 | 131 | 41 | 2 | 172 | 302 | 37 | 132 | 1.31e-24 | 97.4 |
MS.gene061506.t1 | AT1G05710 | 41.985 | 131 | 41 | 2 | 172 | 302 | 37 | 132 | 1.31e-24 | 97.4 |
MS.gene061506.t1 | AT1G05710 | 41.985 | 131 | 41 | 2 | 172 | 302 | 37 | 132 | 1.31e-24 | 97.4 |
MS.gene061506.t1 | AT1G05710 | 41.985 | 131 | 41 | 2 | 172 | 302 | 37 | 132 | 1.31e-24 | 97.4 |
MS.gene061506.t1 | AT1G05710 | 41.985 | 131 | 41 | 2 | 172 | 302 | 37 | 132 | 1.31e-24 | 97.4 |
MS.gene061506.t1 | AT1G05710 | 41.985 | 131 | 41 | 2 | 172 | 302 | 37 | 132 | 1.31e-24 | 97.4 |
MS.gene061506.t1 | AT1G31050 | 43.125 | 160 | 63 | 6 | 153 | 309 | 300 | 434 | 1.73e-24 | 102 |
MS.gene061506.t1 | AT1G31050 | 43.125 | 160 | 63 | 6 | 153 | 309 | 304 | 438 | 2.20e-24 | 102 |
MS.gene061506.t1 | AT1G05710 | 42.857 | 133 | 59 | 4 | 172 | 302 | 29 | 146 | 2.71e-24 | 97.1 |
MS.gene061506.t1 | AT1G05710 | 42.857 | 133 | 59 | 4 | 172 | 302 | 29 | 146 | 2.71e-24 | 97.1 |
MS.gene061506.t1 | AT1G05710 | 42.857 | 133 | 59 | 4 | 172 | 302 | 37 | 154 | 3.29e-24 | 97.1 |
MS.gene061506.t1 | AT1G05710 | 42.857 | 133 | 59 | 4 | 172 | 302 | 37 | 154 | 3.29e-24 | 97.1 |
MS.gene061506.t1 | AT1G05710 | 42.857 | 133 | 59 | 4 | 172 | 302 | 37 | 154 | 3.29e-24 | 97.1 |
MS.gene061506.t1 | AT1G05710 | 42.857 | 133 | 59 | 4 | 172 | 302 | 37 | 154 | 3.29e-24 | 97.1 |
MS.gene061506.t1 | AT1G31050 | 44.079 | 152 | 57 | 6 | 158 | 306 | 305 | 431 | 1.73e-23 | 100 |
MS.gene061506.t1 | AT4G05170 | 36.898 | 187 | 93 | 6 | 51 | 237 | 76 | 237 | 3.38e-22 | 93.6 |
MS.gene061506.t1 | AT1G49830 | 42.623 | 122 | 41 | 2 | 182 | 303 | 134 | 226 | 3.17e-21 | 90.9 |
MS.gene061506.t1 | AT1G61660 | 62.162 | 74 | 28 | 0 | 156 | 229 | 264 | 337 | 3.40e-21 | 92.8 |
MS.gene061506.t1 | AT1G61660 | 62.162 | 74 | 28 | 0 | 156 | 229 | 264 | 337 | 3.40e-21 | 92.8 |
MS.gene061506.t1 | AT1G49830 | 42.623 | 122 | 41 | 2 | 182 | 303 | 133 | 225 | 3.44e-21 | 90.9 |
MS.gene061506.t1 | AT4G05170 | 38.182 | 165 | 78 | 5 | 51 | 215 | 76 | 216 | 2.10e-20 | 88.2 |
MS.gene061506.t1 | AT4G05170 | 38.182 | 165 | 78 | 5 | 51 | 215 | 76 | 216 | 2.10e-20 | 88.2 |
MS.gene061506.t1 | AT3G20640 | 52.632 | 95 | 39 | 2 | 144 | 233 | 312 | 405 | 2.22e-20 | 90.9 |
MS.gene061506.t1 | AT3G19500 | 61.765 | 68 | 26 | 0 | 158 | 225 | 140 | 207 | 4.73e-20 | 87.4 |
MS.gene061506.t1 | AT1G61660 | 34.132 | 167 | 74 | 5 | 143 | 309 | 241 | 371 | 8.41e-18 | 83.2 |
MS.gene061506.t1 | AT3G20640 | 54.545 | 77 | 29 | 2 | 144 | 215 | 312 | 387 | 1.21e-15 | 77.0 |
MS.gene061506.t1 | AT1G31050 | 53.030 | 66 | 30 | 1 | 153 | 217 | 300 | 365 | 8.84e-12 | 65.5 |
MS.gene061506.t1 | AT1G31050 | 53.030 | 66 | 30 | 1 | 153 | 217 | 304 | 369 | 9.48e-12 | 65.5 |
Find 86 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATGAAGTTGGTGCATAATT+AGG | 0.122725 | 6.1:+76865623 | None:intergenic |
TTATTGATGTTCCACCAATT+AGG | 0.248969 | 6.1:+76865707 | None:intergenic |
TTACAGCTCCTAAATGAAAA+TGG | 0.255266 | 6.1:-76860861 | MS.gene061506:intron |
TGGTTATATCAGATTCCTTC+AGG | 0.271543 | 6.1:-76862978 | MS.gene061506:CDS |
CTACTCTTTAGGTCCTTCTT+TGG | 0.274553 | 6.1:+76860515 | None:intergenic |
CCTGATCCATTGTTCAAGTA+TGG | 0.280772 | 6.1:+76862786 | None:intergenic |
ATGACAATGGAGCTGATTAT+TGG | 0.285895 | 6.1:-76860448 | MS.gene061506:CDS |
TAATTGAAGGGGTGGAATTG+TGG | 0.287660 | 6.1:-76865096 | MS.gene061506:intron |
CATCAGCTTGTTTCCCCATT+TGG | 0.289480 | 6.1:-76863814 | MS.gene061506:CDS |
ATTACCTGACCAGGGTCTTC+AGG | 0.299545 | 6.1:+76861094 | None:intergenic |
TGATGGCTAGTAACCCTAAT+TGG | 0.323527 | 6.1:-76865721 | MS.gene061506:CDS |
TATTGATGTTCCACCAATTA+GGG | 0.326053 | 6.1:+76865708 | None:intergenic |
ATGAAGTTGGTGCATAATTA+GGG | 0.328916 | 6.1:+76865624 | None:intergenic |
CAGGTTAGGAAGGAGAAGTT+AGG | 0.364935 | 6.1:-76863856 | MS.gene061506:CDS |
GAAAATAAAGGAGGAGGTTG+TGG | 0.373125 | 6.1:+76865668 | None:intergenic |
TTAGAAGGAGATGAAAATAA+AGG | 0.374150 | 6.1:+76865656 | None:intergenic |
TCTGTCTTGTTAGAAGCTAT+TGG | 0.377963 | 6.1:-76862998 | MS.gene061506:CDS |
AATTAATTACCTTTCCAAAT+GGG | 0.386503 | 6.1:+76863800 | None:intergenic |
AGTTGTTGACTCCATGGTTC+GGG | 0.390425 | 6.1:+76865557 | None:intergenic |
AATTGAAGGGGTGGAATTGT+GGG | 0.398017 | 6.1:-76865095 | MS.gene061506:intron |
ACATCAACAAGAGAAGCATT+TGG | 0.400442 | 6.1:+76865014 | None:intergenic |
ACTTGTAGTGTACATGATAC+TGG | 0.401193 | 6.1:+76860476 | None:intergenic |
TTAGGGTTGAGAAAGTTAGA+AGG | 0.407564 | 6.1:+76865641 | None:intergenic |
TGACAATGGAGCTGATTATT+GGG | 0.408868 | 6.1:-76860447 | MS.gene061506:CDS |
CCCTAGGAGGAGGAGGCTTT+CGG | 0.409114 | 6.1:-76860418 | MS.gene061506:CDS |
TACAACTCAAACTACTTTCA+AGG | 0.412851 | 6.1:-76864152 | MS.gene061506:intron |
TTTAATCTTAATTAGGTTCA+AGG | 0.413424 | 6.1:-76861136 | MS.gene061506:intron |
GACACAACCCTCTACTCTTT+AGG | 0.414717 | 6.1:+76860504 | None:intergenic |
TAATTAATTACCTTTCCAAA+TGG | 0.416474 | 6.1:+76863799 | None:intergenic |
GAGTTGTTGACTCCATGGTT+CGG | 0.439817 | 6.1:+76865556 | None:intergenic |
AAAGGAAGAAAAGATGAAGT+TGG | 0.451016 | 6.1:+76865611 | None:intergenic |
AAAGGAGGAGGTTGTGGAGA+TGG | 0.454745 | 6.1:+76865674 | None:intergenic |
TCAGGAAATAGCTATGCATA+TGG | 0.457920 | 6.1:-76864978 | MS.gene061506:CDS |
GCACCTGCCCTAGGAGGAGG+AGG | 0.461982 | 6.1:-76860425 | MS.gene061506:CDS |
AAGTGTAACAGTTCTGCATC+TGG | 0.468089 | 6.1:-76864208 | MS.gene061506:CDS |
AAACACAAGGCAACAACATC+CGG | 0.472522 | 6.1:-76862763 | MS.gene061506:intron |
TTACCTGACCAGGGTCTTCA+GGG | 0.475060 | 6.1:+76861095 | None:intergenic |
ACCGAAAGCCTCCTCCTCCT+AGG | 0.478830 | 6.1:+76860417 | None:intergenic |
ATTAATTACCTTTCCAAATG+GGG | 0.483813 | 6.1:+76863801 | None:intergenic |
GGTTATATCAGATTCCTTCA+GGG | 0.485572 | 6.1:-76862977 | MS.gene061506:CDS |
AAGAAGGACCTAAAGAGTAG+AGG | 0.491449 | 6.1:-76860512 | MS.gene061506:CDS |
ATTCCCTGAAGACCCTGGTC+AGG | 0.501966 | 6.1:-76861098 | MS.gene061506:intron |
CCATACTTGAACAATGGATC+AGG | 0.502640 | 6.1:-76862786 | MS.gene061506:CDS |
TTCTCAATTTCAGGTTAGGA+AGG | 0.504978 | 6.1:-76863866 | MS.gene061506:intron |
AGCTTACCATACTTGAACAA+TGG | 0.505172 | 6.1:-76862792 | MS.gene061506:CDS |
GATTATTGGGCACCTGCCCT+AGG | 0.505746 | 6.1:-76860434 | MS.gene061506:CDS |
AGAAGGACCTAAAGAGTAGA+GGG | 0.506332 | 6.1:-76860511 | MS.gene061506:CDS |
ATGGGGAAACAAGCTGATGA+AGG | 0.508848 | 6.1:+76863818 | None:intergenic |
ATTCCTTCAGGGTCAAATTG+AGG | 0.512155 | 6.1:-76862966 | MS.gene061506:intron |
TGGGCACCTGCCCTAGGAGG+AGG | 0.520166 | 6.1:-76860428 | MS.gene061506:CDS |
GGAGATGAAAATAAAGGAGG+AGG | 0.522950 | 6.1:+76865662 | None:intergenic |
TATCATGTACACTACAAGTT+GGG | 0.530955 | 6.1:-76860472 | MS.gene061506:CDS |
ATCCAAAGGATTACCTGACC+AGG | 0.531475 | 6.1:+76861085 | None:intergenic |
AAGCCTCCTCCTCCTAGGGC+AGG | 0.533559 | 6.1:+76860422 | None:intergenic |
TACATGAGTTGTTGACTCCA+TGG | 0.541593 | 6.1:+76865551 | None:intergenic |
TTCTCAAGAAGAACCAAAGA+AGG | 0.544458 | 6.1:-76860528 | MS.gene061506:CDS |
CCGAAAGCCTCCTCCTCCTA+GGG | 0.547448 | 6.1:+76860418 | None:intergenic |
GAAGAGGAAAGCAGCTGAAG+AGG | 0.554156 | 6.1:-76860835 | MS.gene061506:intron |
GAAGGAGATGAAAATAAAGG+AGG | 0.562051 | 6.1:+76865659 | None:intergenic |
GCTTGTTTCCCCATTTGGAA+AGG | 0.570374 | 6.1:-76863809 | MS.gene061506:intron |
AAGTTTCAATAACAACATGT+TGG | 0.571684 | 6.1:-76864922 | MS.gene061506:CDS |
ATCAAGAGCTTCCCGAACCA+TGG | 0.573656 | 6.1:-76865568 | MS.gene061506:CDS |
GTAACAGTTCTGCATCTGGT+GGG | 0.576642 | 6.1:-76864204 | MS.gene061506:CDS |
TGTTTATTCCCTGAAGACCC+TGG | 0.579599 | 6.1:-76861103 | MS.gene061506:CDS |
TGTAACAGTTCTGCATCTGG+TGG | 0.591294 | 6.1:-76864205 | MS.gene061506:CDS |
TGGCTAGTAACCCTAATTGG+TGG | 0.593806 | 6.1:-76865718 | MS.gene061506:CDS |
GGAGGAGGTTGTGGAGATGG+TGG | 0.593961 | 6.1:+76865677 | None:intergenic |
TAAATGAAAATGGTTTGAAG+AGG | 0.595062 | 6.1:-76860851 | MS.gene061506:CDS |
TAACAGTTCTGCATCTGGTG+GGG | 0.597084 | 6.1:-76864203 | MS.gene061506:CDS |
GTATCATGTACACTACAAGT+TGG | 0.599973 | 6.1:-76860473 | MS.gene061506:CDS |
TCACCTCAATTTGACCCTGA+AGG | 0.601592 | 6.1:+76862963 | None:intergenic |
GATGTTAAACAAGAAAACTC+AGG | 0.605746 | 6.1:-76864996 | MS.gene061506:CDS |
TGGGGAAACAAGCTGATGAA+GGG | 0.608733 | 6.1:+76863819 | None:intergenic |
ATTGAAGGGGTGGAATTGTG+GGG | 0.610742 | 6.1:-76865094 | MS.gene061506:intron |
TATTGGGCACCTGCCCTAGG+AGG | 0.619502 | 6.1:-76860431 | MS.gene061506:CDS |
AATAGCTATGCATATGGACA+TGG | 0.627229 | 6.1:-76864972 | MS.gene061506:CDS |
ACCTCAGAAGATCGATCTAG+TGG | 0.628411 | 6.1:+76864858 | None:intergenic |
CTACAAGTTGGGAATGACAA+TGG | 0.634609 | 6.1:-76860461 | MS.gene061506:CDS |
ACCACTAGATCGATCTTCTG+AGG | 0.634967 | 6.1:-76864859 | MS.gene061506:intron |
TTGAAGGGGTGGAATTGTGG+GGG | 0.650816 | 6.1:-76865093 | MS.gene061506:intron |
TCAGAAGATCGATCTAGTGG+TGG | 0.660060 | 6.1:+76864861 | None:intergenic |
TCCAAAGGATTACCTGACCA+GGG | 0.669498 | 6.1:+76861086 | None:intergenic |
ACAATAGTAATATAGATGTG+AGG | 0.676915 | 6.1:-76864887 | MS.gene061506:CDS |
GGTGGAACATCAATAACATG+AGG | 0.683914 | 6.1:-76865700 | MS.gene061506:CDS |
AATAGCTTCTAACAAGACAG+AGG | 0.708748 | 6.1:+76863000 | None:intergenic |
ACAATGGATCAGGAAACACA+AGG | 0.764788 | 6.1:-76862776 | MS.gene061506:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTGTTATAAATTAAAG+TGG | - | chr6.1:76862508-76862527 | MS.gene061506:intron | 10.0% |
!! | AGTAAATATTCAAAATAAAT+TGG | - | chr6.1:76864435-76864454 | MS.gene061506:intron | 10.0% |
!! | ATTGCATATATAATTTATAT+TGG | + | chr6.1:76861542-76861561 | None:intergenic | 10.0% |
!! | GTAAATATTCAAAATAAATT+GGG | - | chr6.1:76864436-76864455 | MS.gene061506:intron | 10.0% |
!! | GTAATTATTTAATCTTAATT+AGG | - | chr6.1:76864994-76865013 | MS.gene061506:CDS | 10.0% |
!!! | AAAATCTAATTAATTGTTTT+TGG | - | chr6.1:76861017-76861036 | MS.gene061506:intron | 10.0% |
!!! | AATCACTATTTTTTTTTTAA+GGG | - | chr6.1:76860628-76860647 | MS.gene061506:intron | 10.0% |
!!! | CTTTTATAAAAAAGATTAAA+GGG | + | chr6.1:76864022-76864041 | None:intergenic | 10.0% |
!!! | GTAAATTACTTTATTATTTT+TGG | - | chr6.1:76861853-76861872 | MS.gene061506:intron | 10.0% |
!!! | TAATCACTATTTTTTTTTTA+AGG | - | chr6.1:76860627-76860646 | MS.gene061506:intron | 10.0% |
!!! | TAGTTTATAACTTTTTATTT+GGG | + | chr6.1:76863830-76863849 | None:intergenic | 10.0% |
!!! | TCTTTTATAAAAAAGATTAA+AGG | + | chr6.1:76864023-76864042 | None:intergenic | 10.0% |
!!! | TTAGTTTATAACTTTTTATT+TGG | + | chr6.1:76863831-76863850 | None:intergenic | 10.0% |
!! | AATTTCTTATTGAATATACT+AGG | + | chr6.1:76862366-76862385 | None:intergenic | 15.0% |
!! | ATACATATATTGTTAATTAG+AGG | - | chr6.1:76863968-76863987 | MS.gene061506:intron | 15.0% |
!! | ATATATGAATAATCAAAACA+AGG | - | chr6.1:76865131-76865150 | MS.gene061506:intron | 15.0% |
!! | ATTATCACCTTTAATTAATT+TGG | - | chr6.1:76861459-76861478 | MS.gene061506:intron | 15.0% |
!! | TACATATATTGTTAATTAGA+GGG | - | chr6.1:76863969-76863988 | MS.gene061506:intron | 15.0% |
!! | TATATGAATAATCAAAACAA+GGG | - | chr6.1:76865132-76865151 | MS.gene061506:intron | 15.0% |
!! | TTAATTAAAGGTGATAATAT+TGG | + | chr6.1:76861457-76861476 | None:intergenic | 15.0% |
!! | TTGACTTTATAAAAAAAAAC+CGG | - | chr6.1:76864106-76864125 | MS.gene061506:intron | 15.0% |
!! | TTTGAATATAAATAACCAAA+TGG | - | chr6.1:76864267-76864286 | MS.gene061506:intron | 15.0% |
!!! | AATAATTCTTATTTTTACGA+AGG | + | chr6.1:76864808-76864827 | None:intergenic | 15.0% |
!!! | TAAGAAATTTTTCACTTTTT+TGG | + | chr6.1:76863637-76863656 | None:intergenic | 15.0% |
!!! | TATGATTTTAAACTAAAGAA+AGG | + | chr6.1:76861587-76861606 | None:intergenic | 15.0% |
!!! | TCAAAGACAAAATATTTTTT+TGG | + | chr6.1:76865437-76865456 | None:intergenic | 15.0% |
!!! | TCTTTAGTTTAAAATCATAA+GGG | - | chr6.1:76861588-76861607 | MS.gene061506:intron | 15.0% |
!!! | TTATATGCTTTTTAATAGAA+AGG | - | chr6.1:76862388-76862407 | MS.gene061506:intron | 15.0% |
!!! | TTCTTTAGTTTAAAATCATA+AGG | - | chr6.1:76861587-76861606 | MS.gene061506:intron | 15.0% |
!!! | TTTTGGTCTATAATTTTTAT+TGG | + | chr6.1:76865420-76865439 | None:intergenic | 15.0% |
!! | AAATTAAAGGATAGTGTTAA+CGG | + | chr6.1:76862839-76862858 | None:intergenic | 20.0% |
!! | AACAATTATCATGGATAATA+TGG | - | chr6.1:76864207-76864226 | MS.gene061506:CDS | 20.0% |
!! | AAGATCAAATATATCAATCT+TGG | - | chr6.1:76864083-76864102 | MS.gene061506:intron | 20.0% |
!! | AATCACTACTAAATTAGTAA+GGG | - | chr6.1:76860656-76860675 | MS.gene061506:intron | 20.0% |
!! | AATTAATTACCTTTCCAAAT+GGG | + | chr6.1:76862340-76862359 | None:intergenic | 20.0% |
!! | ACATTAGTTCATATGAAATA+TGG | - | chr6.1:76861814-76861833 | MS.gene061506:intron | 20.0% |
!! | ATATGAATAATCAAAACAAG+GGG | - | chr6.1:76865133-76865152 | MS.gene061506:intron | 20.0% |
!! | ATTATATATGCAATCTCAAA+AGG | - | chr6.1:76861548-76861567 | MS.gene061506:intron | 20.0% |
!! | ATTGCATTATATATAGAAAG+TGG | - | chr6.1:76863060-76863079 | MS.gene061506:intron | 20.0% |
!! | CATTCAATAAATGATTTATG+TGG | + | chr6.1:76863612-76863631 | None:intergenic | 20.0% |
!! | CATTCAATAAATTATGTATG+TGG | - | chr6.1:76863573-76863592 | MS.gene061506:intron | 20.0% |
!! | GTTGCTTCAAAAAAAAAATT+TGG | + | chr6.1:76863875-76863894 | None:intergenic | 20.0% |
!! | TAATTAATTACCTTTCCAAA+TGG | + | chr6.1:76862341-76862360 | None:intergenic | 20.0% |
!! | TGTAGTAGCAAATAAATTAA+AGG | + | chr6.1:76862852-76862871 | None:intergenic | 20.0% |
!! | TTTAATCTTAATTAGGTTCA+AGG | - | chr6.1:76865001-76865020 | MS.gene061506:CDS | 20.0% |
!!! | AAATTTCTTACATTTGAGAT+CGG | - | chr6.1:76863647-76863666 | MS.gene061506:intron | 20.0% |
!!! | AATTTTTTCTCTAATAGTGA+TGG | + | chr6.1:76862614-76862633 | None:intergenic | 20.0% |
!!! | AGAAGTATTACTTTAAAAAC+TGG | - | chr6.1:76864130-76864149 | MS.gene061506:intron | 20.0% |
!!! | ATGACAAGTAATTTTTTTGA+GGG | + | chr6.1:76863435-76863454 | None:intergenic | 20.0% |
!!! | ATTTTAAACTAAAGAAAGGT+TGG | + | chr6.1:76861583-76861602 | None:intergenic | 20.0% |
!!! | CTATATTTTGTTGTTGTATT+AGG | + | chr6.1:76862202-76862221 | None:intergenic | 20.0% |
!!! | CTTTAGTTTAAAATCATAAG+GGG | - | chr6.1:76861589-76861608 | MS.gene061506:intron | 20.0% |
!!! | TATGACAAGTAATTTTTTTG+AGG | + | chr6.1:76863436-76863455 | None:intergenic | 20.0% |
!!! | TGGAAAATGACAATTATTTT+AGG | - | chr6.1:76864150-76864169 | MS.gene061506:intron | 20.0% |
!!! | TTAGCATTTGATTTTGAAAT+TGG | + | chr6.1:76861092-76861111 | None:intergenic | 20.0% |
!!! | TTGTAGAATGAAAGAAATTT+TGG | + | chr6.1:76861911-76861930 | None:intergenic | 20.0% |
!!! | TTTTAAACTAAAGAAAGGTT+GGG | + | chr6.1:76861582-76861601 | None:intergenic | 20.0% |
!!! | TTTTAAAGTAATACTTCTTC+CGG | + | chr6.1:76864128-76864147 | None:intergenic | 20.0% |
!!! | TTTTTTTTTGTTCCCTATTT+TGG | + | chr6.1:76862479-76862498 | None:intergenic | 20.0% |
! | AAAAATTTCTTCATGTATGG+TGG | - | chr6.1:76861645-76861664 | MS.gene061506:intron | 25.0% |
! | AAAATTCAAACGTATGTGTT+TGG | - | chr6.1:76860978-76860997 | MS.gene061506:intron | 25.0% |
! | AAGTTTCAATAACAACATGT+TGG | - | chr6.1:76861215-76861234 | MS.gene061506:intron | 25.0% |
! | AATTAAAGGATAGTGTTAAC+GGG | + | chr6.1:76862838-76862857 | None:intergenic | 25.0% |
! | ACAATAGTAATATAGATGTG+AGG | - | chr6.1:76861250-76861269 | MS.gene061506:intron | 25.0% |
! | ACATGTTGTGTTAAAATCAA+GGG | - | chr6.1:76864749-76864768 | MS.gene061506:intron | 25.0% |
! | ACTATCAAAATATATTGTCG+AGG | + | chr6.1:76864587-76864606 | None:intergenic | 25.0% |
! | ATCACTACTAAATTAGTAAG+GGG | - | chr6.1:76860657-76860676 | MS.gene061506:intron | 25.0% |
! | ATGCATAATATTCACCATAA+TGG | + | chr6.1:76860845-76860864 | None:intergenic | 25.0% |
! | ATTAATTACCTTTCCAAATG+GGG | + | chr6.1:76862339-76862358 | None:intergenic | 25.0% |
! | CAATCACTACTAAATTAGTA+AGG | - | chr6.1:76860655-76860674 | MS.gene061506:intron | 25.0% |
! | CTAGTTTATGGATAATTATG+TGG | - | chr6.1:76864952-76864971 | MS.gene061506:CDS | 25.0% |
! | GAATAATTGCAATTGAGAAT+TGG | + | chr6.1:76862117-76862136 | None:intergenic | 25.0% |
! | GAATCGAACAAATGAATAAT+TGG | + | chr6.1:76863905-76863924 | None:intergenic | 25.0% |
! | GACAAAAATTTCTTCATGTA+TGG | - | chr6.1:76861642-76861661 | MS.gene061506:intron | 25.0% |
! | TAAATGAAAATGGTTTGAAG+AGG | - | chr6.1:76865286-76865305 | MS.gene061506:intron | 25.0% |
! | TAAGTAAAGTCAATCGAAAA+TGG | + | chr6.1:76863748-76863767 | None:intergenic | 25.0% |
! | TAGGCTTATTTATAATGTGA+TGG | - | chr6.1:76864382-76864401 | MS.gene061506:intron | 25.0% |
! | TATTAAAAATCTGCTAAAGC+TGG | + | chr6.1:76865103-76865122 | None:intergenic | 25.0% |
! | TGCAAATACAACAATTATCA+TGG | - | chr6.1:76864198-76864217 | MS.gene061506:CDS | 25.0% |
! | TTAGAAGGAGATGAAAATAA+AGG | + | chr6.1:76860484-76860503 | None:intergenic | 25.0% |
! | TTGACCATATTAATTCTTAC+CGG | + | chr6.1:76863396-76863415 | None:intergenic | 25.0% |
! | TTGTTATGTGAAATGTGAAA+TGG | + | chr6.1:76863263-76863282 | None:intergenic | 25.0% |
!! | TCAAATTTTTCATAGCAACA+CGG | - | chr6.1:76861758-76861777 | MS.gene061506:intron | 25.0% |
!! | TCTTCAAACCATTTTCATTT+AGG | + | chr6.1:76865287-76865306 | None:intergenic | 25.0% |
!! | TGTTAATTAGAGGGTATAAA+TGG | - | chr6.1:76863978-76863997 | MS.gene061506:intron | 25.0% |
!!! | AAAAATGTAGTTTGTTCCTT+TGG | - | chr6.1:76864718-76864737 | MS.gene061506:intron | 25.0% |
!!! | AATTGTTTTTGGCTAATTGA+AGG | - | chr6.1:76861028-76861047 | MS.gene061506:intron | 25.0% |
!!! | ACATTTCTCTTTAGTTCTAA+TGG | + | chr6.1:76865078-76865097 | None:intergenic | 25.0% |
!!! | ATTCCACTTTTCAGATAAAA+GGG | + | chr6.1:76863800-76863819 | None:intergenic | 25.0% |
!!! | ATTGTTTTTGGCTAATTGAA+GGG | - | chr6.1:76861029-76861048 | MS.gene061506:intron | 25.0% |
!!! | TTCATGTACCTTTTTTTTCT+TGG | - | chr6.1:76861388-76861407 | MS.gene061506:intron | 25.0% |
!!! | TTCTTATTTTTACGAAGGTA+TGG | + | chr6.1:76864803-76864822 | None:intergenic | 25.0% |
!!! | TTTCTGCATGATATTTTAGA+GGG | - | chr6.1:76863007-76863026 | MS.gene061506:CDS | 25.0% |
!!! | TTTTCTGCATGATATTTTAG+AGG | - | chr6.1:76863006-76863025 | MS.gene061506:CDS | 25.0% |
AAACATACAAATACCATGTG+GGG | - | chr6.1:76862065-76862084 | MS.gene061506:intron | 30.0% | |
AAAGGAAGAAAAGATGAAGT+TGG | + | chr6.1:76860529-76860548 | None:intergenic | 30.0% | |
AAATTTCATGCTTAGCCATT+TGG | + | chr6.1:76864285-76864304 | None:intergenic | 30.0% | |
AAGATATCATGAAAACGTGT+AGG | + | chr6.1:76862250-76862269 | None:intergenic | 30.0% | |
ACAAACATACAAATACCATG+TGG | - | chr6.1:76862063-76862082 | MS.gene061506:intron | 30.0% | |
ACATCCGGTAAGAATTAATA+TGG | - | chr6.1:76863389-76863408 | MS.gene061506:intron | 30.0% | |
ACGTATGTGTTTGGTTAATT+AGG | - | chr6.1:76860987-76861006 | MS.gene061506:intron | 30.0% | |
ATAATTCCAAGAGAGGAAAA+AGG | + | chr6.1:76863315-76863334 | None:intergenic | 30.0% | |
ATATATAGAAAGTGGTGACT+AGG | - | chr6.1:76863068-76863087 | MS.gene061506:intron | 30.0% | |
ATCAGAGTTCAATTCTTAGA+TGG | - | chr6.1:76863720-76863739 | MS.gene061506:intron | 30.0% | |
ATGTGTTTGGTTAATTAGGA+AGG | - | chr6.1:76860991-76861010 | MS.gene061506:intron | 30.0% | |
ATTCATAAAAAGTCTAGCCA+TGG | + | chr6.1:76861369-76861388 | None:intergenic | 30.0% | |
CAAACATACAAATACCATGT+GGG | - | chr6.1:76862064-76862083 | MS.gene061506:intron | 30.0% | |
CACATGTTGTGTTAAAATCA+AGG | - | chr6.1:76864748-76864767 | MS.gene061506:intron | 30.0% | |
CATGTTGGCAATAACTAATT+AGG | - | chr6.1:76865585-76865604 | MS.gene061506:CDS | 30.0% | |
CATGTTGTGTTAAAATCAAG+GGG | - | chr6.1:76864750-76864769 | MS.gene061506:intron | 30.0% | |
CTCATTGACCAAGAAAAAAA+AGG | + | chr6.1:76861399-76861418 | None:intergenic | 30.0% | |
CTCTTGGCCAAATTAATTAA+AGG | + | chr6.1:76861469-76861488 | None:intergenic | 30.0% | |
GATATCTTGTTCTCAATTTC+AGG | - | chr6.1:76862262-76862281 | MS.gene061506:intron | 30.0% | |
GATGTTAAACAAGAAAACTC+AGG | - | chr6.1:76861141-76861160 | MS.gene061506:intron | 30.0% | |
GTAAAGTTTCTTGAAAAGTG+AGG | + | chr6.1:76861435-76861454 | None:intergenic | 30.0% | |
TACAACTCAAACTACTTTCA+AGG | - | chr6.1:76861985-76862004 | MS.gene061506:intron | 30.0% | |
TATATTGTCGAGGATATTAG+AGG | + | chr6.1:76864577-76864596 | None:intergenic | 30.0% | |
TATCATGTACACTACAAGTT+GGG | - | chr6.1:76865665-76865684 | MS.gene061506:CDS | 30.0% | |
TATTGATGTTCCACCAATTA+GGG | + | chr6.1:76860432-76860451 | None:intergenic | 30.0% | |
TCCTTAAAGAGAAAAGCTTA+GGG | - | chr6.1:76864521-76864540 | MS.gene061506:intron | 30.0% | |
TTACAGCTCCTAAATGAAAA+TGG | - | chr6.1:76865276-76865295 | MS.gene061506:intron | 30.0% | |
TTAGTGACAAGAGATTTAGA+GGG | - | chr6.1:76860740-76860759 | MS.gene061506:intron | 30.0% | |
TTATTGATGTTCCACCAATT+AGG | + | chr6.1:76860433-76860452 | None:intergenic | 30.0% | |
TTCCTTAAAGAGAAAAGCTT+AGG | - | chr6.1:76864520-76864539 | MS.gene061506:intron | 30.0% | |
TTGCTGATGAAAATTAGACT+TGG | + | chr6.1:76865494-76865513 | None:intergenic | 30.0% | |
! | AAGTTTCTTACATTTGAGAC+CGG | + | chr6.1:76863538-76863557 | None:intergenic | 30.0% |
! | CTTTTCTTCCTTTTTCTTCA+TGG | - | chr6.1:76860536-76860555 | MS.gene061506:intron | 30.0% |
! | GAAGTGCTAAATATTAGGAA+AGG | - | chr6.1:76864644-76864663 | MS.gene061506:intron | 30.0% |
! | GACTTGTTCTATAACCATTA+TGG | - | chr6.1:76860828-76860847 | MS.gene061506:intron | 30.0% |
! | TTTATTTGCTACTACATTCG+AGG | - | chr6.1:76862856-76862875 | MS.gene061506:intron | 30.0% |
! | TTTTCATGCCATGAAGAAAA+AGG | + | chr6.1:76860547-76860566 | None:intergenic | 30.0% |
!! | ACAGAGAAGTGCTAAATATT+AGG | - | chr6.1:76864639-76864658 | MS.gene061506:intron | 30.0% |
!! | ATGAAGTTGGTGCATAATTA+GGG | + | chr6.1:76860516-76860535 | None:intergenic | 30.0% |
!! | CATTCCACTTTTCAGATAAA+AGG | + | chr6.1:76863801-76863820 | None:intergenic | 30.0% |
!! | CTTATGTGTCTTTTTCATGT+TGG | - | chr6.1:76865570-76865589 | MS.gene061506:CDS | 30.0% |
!! | TTCCCTATTTTGGATTTAGT+GGG | + | chr6.1:76862469-76862488 | None:intergenic | 30.0% |
!! | TTCTGCATGATATTTTAGAG+GGG | - | chr6.1:76863008-76863027 | MS.gene061506:CDS | 30.0% |
!! | TTTAGTTCTAATGGATCCAA+AGG | + | chr6.1:76865069-76865088 | None:intergenic | 30.0% |
!!! | AAACCCCTTCCTTTTTTTTA+GGG | + | chr6.1:76865162-76865181 | None:intergenic | 30.0% |
!!! | TTGTTTTTGGCTAATTGAAG+GGG | - | chr6.1:76861030-76861049 | MS.gene061506:intron | 30.0% |
AAAATGATATCGAGTGCTCT+TGG | - | chr6.1:76862681-76862700 | MS.gene061506:intron | 35.0% | |
AAATGATATCGAGTGCTCTT+GGG | - | chr6.1:76862682-76862701 | MS.gene061506:intron | 35.0% | |
AAGTGCACATGCTAAAAAGT+TGG | + | chr6.1:76862225-76862244 | None:intergenic | 35.0% | |
AATAGCTATGCATATGGACA+TGG | - | chr6.1:76861165-76861184 | MS.gene061506:intron | 35.0% | |
AATAGCTTCTAACAAGACAG+AGG | + | chr6.1:76863140-76863159 | None:intergenic | 35.0% | |
AATTGTTTCGTGTGTGTCTT+TGG | - | chr6.1:76864777-76864796 | MS.gene061506:intron | 35.0% | |
ACTTGTAGTGTACATGATAC+TGG | + | chr6.1:76865664-76865683 | None:intergenic | 35.0% | |
AGCTTACCATACTTGAACAA+TGG | - | chr6.1:76863345-76863364 | MS.gene061506:intron | 35.0% | |
AGGTATAATGCAAACTTCCA+TGG | - | chr6.1:76862005-76862024 | MS.gene061506:intron | 35.0% | |
ATCCCCACTAAATCCAAAAT+AGG | - | chr6.1:76862463-76862482 | MS.gene061506:intron | 35.0% | |
ATGAAAGAGAGTTAAGGAGT+TGG | + | chr6.1:76862039-76862058 | None:intergenic | 35.0% | |
ATGACAATGGAGCTGATTAT+TGG | - | chr6.1:76865689-76865708 | MS.gene061506:CDS | 35.0% | |
CTGATGAAAATTAGACTTGG+AGG | + | chr6.1:76865491-76865510 | None:intergenic | 35.0% | |
CTTCCCTAAAAAAAAGGAAG+GGG | - | chr6.1:76865156-76865175 | MS.gene061506:intron | 35.0% | |
GAAGGAGATGAAAATAAAGG+AGG | + | chr6.1:76860481-76860500 | None:intergenic | 35.0% | |
GCTTCCCTAAAAAAAAGGAA+GGG | - | chr6.1:76865155-76865174 | MS.gene061506:intron | 35.0% | |
GCTTCTTCATTAAGAATCCA+TGG | - | chr6.1:76861349-76861368 | MS.gene061506:intron | 35.0% | |
GGAGTAACTATTGTCTTTCT+TGG | - | chr6.1:76862086-76862105 | MS.gene061506:intron | 35.0% | |
GGTTATATCAGATTCCTTCA+GGG | - | chr6.1:76863160-76863179 | MS.gene061506:intron | 35.0% | |
GTATCATGTACACTACAAGT+TGG | - | chr6.1:76865664-76865683 | MS.gene061506:CDS | 35.0% | |
GTATGCATGAAAGAGAGTTA+AGG | + | chr6.1:76862045-76862064 | None:intergenic | 35.0% | |
GTTAGTGACAAGAGATTTAG+AGG | - | chr6.1:76860739-76860758 | MS.gene061506:intron | 35.0% | |
TAGTGACAAGAGATTTAGAG+GGG | - | chr6.1:76860741-76860760 | MS.gene061506:intron | 35.0% | |
TCACTAAATAATACTCCCTC+CGG | - | chr6.1:76863516-76863535 | MS.gene061506:intron | 35.0% | |
TCAGGAAATAGCTATGCATA+TGG | - | chr6.1:76861159-76861178 | MS.gene061506:intron | 35.0% | |
TCCCCACTAAATCCAAAATA+GGG | - | chr6.1:76862464-76862483 | MS.gene061506:intron | 35.0% | |
TGACAATGGAGCTGATTATT+GGG | - | chr6.1:76865690-76865709 | MS.gene061506:CDS | 35.0% | |
TGCTTGTGTTATGGTTGTTT+GGG | + | chr6.1:76863227-76863246 | None:intergenic | 35.0% | |
TGGTTATATCAGATTCCTTC+AGG | - | chr6.1:76863159-76863178 | MS.gene061506:intron | 35.0% | |
TTACTAGTGCTTACTGCTTA+GGG | + | chr6.1:76862580-76862599 | None:intergenic | 35.0% | |
TTAGGGTTGAGAAAGTTAGA+AGG | + | chr6.1:76860499-76860518 | None:intergenic | 35.0% | |
TTCTCAAGAAGAACCAAAGA+AGG | - | chr6.1:76865609-76865628 | MS.gene061506:CDS | 35.0% | |
TTTACTAGTGCTTACTGCTT+AGG | + | chr6.1:76862581-76862600 | None:intergenic | 35.0% | |
! | ACCCTAAGCTTTTCTCTTTA+AGG | + | chr6.1:76864525-76864544 | None:intergenic | 35.0% |
! | GATCCCTTTTATCTGAAAAG+TGG | - | chr6.1:76863794-76863813 | MS.gene061506:intron | 35.0% |
! | TCTGTCTTGTTAGAAGCTAT+TGG | - | chr6.1:76863139-76863158 | MS.gene061506:intron | 35.0% |
! | TGCAGAAACGTACTAGTTTA+TGG | - | chr6.1:76864940-76864959 | MS.gene061506:CDS | 35.0% |
! | TTCATTCCTTTTTCCTCTCT+TGG | - | chr6.1:76863306-76863325 | MS.gene061506:intron | 35.0% |
! | TTCTTACATTTGAGATCGGA+GGG | - | chr6.1:76863651-76863670 | MS.gene061506:intron | 35.0% |
! | TTTCTTACATTTGAGATCGG+AGG | - | chr6.1:76863650-76863669 | MS.gene061506:intron | 35.0% |
!! | AACATGGAAGCTTTTTCTCT+TGG | + | chr6.1:76861485-76861504 | None:intergenic | 35.0% |
!! | ACATCAACAAGAGAAGCATT+TGG | + | chr6.1:76861126-76861145 | None:intergenic | 35.0% |
!! | CTTGTTCTCAATTTCAGGTT+AGG | - | chr6.1:76862267-76862286 | MS.gene061506:intron | 35.0% |
!! | GATGAAGTTGGTGCATAATT+AGG | + | chr6.1:76860517-76860536 | None:intergenic | 35.0% |
!! | GTTCCCTATTTTGGATTTAG+TGG | + | chr6.1:76862470-76862489 | None:intergenic | 35.0% |
!! | TCATGCTCAACACTTTTTGT+AGG | - | chr6.1:76864363-76864382 | MS.gene061506:intron | 35.0% |
!! | TCCCTATTTTGGATTTAGTG+GGG | + | chr6.1:76862468-76862487 | None:intergenic | 35.0% |
!! | TCTGCATGATATTTTAGAGG+GGG | - | chr6.1:76863009-76863028 | MS.gene061506:CDS | 35.0% |
!! | TTCTCAATTTCAGGTTAGGA+AGG | - | chr6.1:76862271-76862290 | MS.gene061506:intron | 35.0% |
!!! | CAAACCCCTTCCTTTTTTTT+AGG | + | chr6.1:76865163-76865182 | None:intergenic | 35.0% |
AAACACAAGGCAACAACATC+CGG | - | chr6.1:76863374-76863393 | MS.gene061506:intron | 40.0% | |
AAGAAGGACCTAAAGAGTAG+AGG | - | chr6.1:76865625-76865644 | MS.gene061506:CDS | 40.0% | |
AAGGGGCTTCCCTAAAAAAA+AGG | - | chr6.1:76865150-76865169 | MS.gene061506:intron | 40.0% | |
AAGTGTAACAGTTCTGCATC+TGG | - | chr6.1:76861929-76861948 | MS.gene061506:intron | 40.0% | |
AATGATATCGAGTGCTCTTG+GGG | - | chr6.1:76862683-76862702 | MS.gene061506:intron | 40.0% | |
AATTGAAGGGGTGGAATTGT+GGG | - | chr6.1:76861042-76861061 | MS.gene061506:intron | 40.0% | |
ACAATGGATCAGGAAACACA+AGG | - | chr6.1:76863361-76863380 | MS.gene061506:intron | 40.0% | |
AGAAGGACCTAAAGAGTAGA+GGG | - | chr6.1:76865626-76865645 | MS.gene061506:CDS | 40.0% | |
ATCACATCGTCATATTGACG+AGG | + | chr6.1:76864474-76864493 | None:intergenic | 40.0% | |
ATTCCTTCAGGGTCAAATTG+AGG | - | chr6.1:76863171-76863190 | MS.gene061506:intron | 40.0% | |
ATTGCAGCAAAATGGAGTAG+TGG | + | chr6.1:76860897-76860916 | None:intergenic | 40.0% | |
CAACATGTGATTTCTGCCAA+AGG | + | chr6.1:76864737-76864756 | None:intergenic | 40.0% | |
CCATACTTGAACAATGGATC+AGG | - | chr6.1:76863351-76863370 | MS.gene061506:intron | 40.0% | |
CCTGATCCATTGTTCAAGTA+TGG | + | chr6.1:76863354-76863373 | None:intergenic | 40.0% | |
CTACTCTTTAGGTCCTTCTT+TGG | + | chr6.1:76865625-76865644 | None:intergenic | 40.0% | |
CTAGGAATATGACAGTGGTA+TGG | - | chr6.1:76863086-76863105 | MS.gene061506:intron | 40.0% | |
GAAAATAAAGGAGGAGGTTG+TGG | + | chr6.1:76860472-76860491 | None:intergenic | 40.0% | |
GGAACAAAGTCTCATCAACT+TGG | + | chr6.1:76864504-76864523 | None:intergenic | 40.0% | |
GGAGATGAAAATAAAGGAGG+AGG | + | chr6.1:76860478-76860497 | None:intergenic | 40.0% | |
GGCTTCCCTAAAAAAAAGGA+AGG | - | chr6.1:76865154-76865173 | MS.gene061506:intron | 40.0% | |
GGTGGAACATCAATAACATG+AGG | - | chr6.1:76860437-76860456 | MS.gene061506:CDS | 40.0% | |
GTGCTTGTGTTATGGTTGTT+TGG | + | chr6.1:76863228-76863247 | None:intergenic | 40.0% | |
TAATTGAAGGGGTGGAATTG+TGG | - | chr6.1:76861041-76861060 | MS.gene061506:intron | 40.0% | |
TCACATCGTCATATTGACGA+GGG | + | chr6.1:76864473-76864492 | None:intergenic | 40.0% | |
TCCACATGAATGCAAGAATG+TGG | - | chr6.1:76864670-76864689 | MS.gene061506:intron | 40.0% | |
TCCACATTCTTGCATTCATG+TGG | + | chr6.1:76864674-76864693 | None:intergenic | 40.0% | |
TGATGGCTAGTAACCCTAAT+TGG | - | chr6.1:76860416-76860435 | MS.gene061506:CDS | 40.0% | |
TGGGGCAATGAAAAAAGCTA+GGG | - | chr6.1:76861952-76861971 | MS.gene061506:intron | 40.0% | |
TTAACAGCGTGCTTGTGTTA+TGG | + | chr6.1:76863236-76863255 | None:intergenic | 40.0% | |
TTCCTCTCTTGGAATTATGC+AGG | - | chr6.1:76863317-76863336 | MS.gene061506:intron | 40.0% | |
TTGCAGCAAAATGGAGTAGT+GGG | + | chr6.1:76860896-76860915 | None:intergenic | 40.0% | |
! | CTACAAGTTGGGAATGACAA+TGG | - | chr6.1:76865676-76865695 | MS.gene061506:CDS | 40.0% |
! | TTCTTACATTTGAGACCGGA+GGG | + | chr6.1:76863534-76863553 | None:intergenic | 40.0% |
! | TTTCTTACATTTGAGACCGG+AGG | + | chr6.1:76863535-76863554 | None:intergenic | 40.0% |
!! | CTGCATGATATTTTAGAGGG+GGG | - | chr6.1:76863010-76863029 | MS.gene061506:CDS | 40.0% |
!! | TACATGAGTTGTTGACTCCA+TGG | + | chr6.1:76860589-76860608 | None:intergenic | 40.0% |
!! | TGCATGATATTTTAGAGGGG+GGG | - | chr6.1:76863011-76863030 | MS.gene061506:CDS | 40.0% |
!!! | TTTTTGGCTAATTGAAGGGG+TGG | - | chr6.1:76861033-76861052 | MS.gene061506:intron | 40.0% |
ACCACTAGATCGATCTTCTG+AGG | - | chr6.1:76861278-76861297 | MS.gene061506:intron | 45.0% | |
ACCTCAGAAGATCGATCTAG+TGG | + | chr6.1:76861282-76861301 | None:intergenic | 45.0% | |
AGCCTGCATAATTCCAAGAG+AGG | + | chr6.1:76863322-76863341 | None:intergenic | 45.0% | |
AGGAGTTGGAAGTTTCTCCA+TGG | + | chr6.1:76862025-76862044 | None:intergenic | 45.0% | |
ATCCAAAGGATTACCTGACC+AGG | + | chr6.1:76865055-76865074 | None:intergenic | 45.0% | |
ATGGGGAAACAAGCTGATGA+AGG | + | chr6.1:76862322-76862341 | None:intergenic | 45.0% | |
ATTGAAGGGGTGGAATTGTG+GGG | - | chr6.1:76861043-76861062 | MS.gene061506:intron | 45.0% | |
CAGGTTAGGAAGGAGAAGTT+AGG | - | chr6.1:76862281-76862300 | MS.gene061506:intron | 45.0% | |
CCAGCTCAATTGCAGCAAAA+TGG | + | chr6.1:76860905-76860924 | None:intergenic | 45.0% | |
GACAATAGTTACTCCCCACA+TGG | + | chr6.1:76862081-76862100 | None:intergenic | 45.0% | |
GACACAACCCTCTACTCTTT+AGG | + | chr6.1:76865636-76865655 | None:intergenic | 45.0% | |
GCTTGTTTCCCCATTTGGAA+AGG | - | chr6.1:76862328-76862347 | MS.gene061506:intron | 45.0% | |
GGTGACTAGGAATATGACAG+TGG | - | chr6.1:76863081-76863100 | MS.gene061506:intron | 45.0% | |
GTAACAGTTCTGCATCTGGT+GGG | - | chr6.1:76861933-76861952 | MS.gene061506:intron | 45.0% | |
GTGGGGCAATGAAAAAAGCT+AGG | - | chr6.1:76861951-76861970 | MS.gene061506:intron | 45.0% | |
GTGGGGGAAGAAGATAAGAT+TGG | - | chr6.1:76861060-76861079 | MS.gene061506:intron | 45.0% | |
TAACAGTTCTGCATCTGGTG+GGG | - | chr6.1:76861934-76861953 | MS.gene061506:intron | 45.0% | |
TCACCTCAATTTGACCCTGA+AGG | + | chr6.1:76863177-76863196 | None:intergenic | 45.0% | |
TCAGAAGATCGATCTAGTGG+TGG | + | chr6.1:76861279-76861298 | None:intergenic | 45.0% | |
TCCAAAGGATTACCTGACCA+GGG | + | chr6.1:76865054-76865073 | None:intergenic | 45.0% | |
TGGCTAGTAACCCTAATTGG+TGG | - | chr6.1:76860419-76860438 | MS.gene061506:CDS | 45.0% | |
TGGGGAAACAAGCTGATGAA+GGG | + | chr6.1:76862321-76862340 | None:intergenic | 45.0% | |
TGTAACAGTTCTGCATCTGG+TGG | - | chr6.1:76861932-76861951 | MS.gene061506:intron | 45.0% | |
TGTTTATTCCCTGAAGACCC+TGG | - | chr6.1:76865034-76865053 | MS.gene061506:CDS | 45.0% | |
! | CATCAGCTTGTTTCCCCATT+TGG | - | chr6.1:76862323-76862342 | MS.gene061506:intron | 45.0% |
! | CCATTTTGCTGCAATTGAGC+TGG | - | chr6.1:76860902-76860921 | MS.gene061506:intron | 45.0% |
! | TGTATGGTGGAGCAAAAGCT+TGG | - | chr6.1:76861658-76861677 | MS.gene061506:intron | 45.0% |
!! | AGTTGTTGACTCCATGGTTC+GGG | + | chr6.1:76860583-76860602 | None:intergenic | 45.0% |
!! | ATGATATTTTAGAGGGGGGG+GGG | - | chr6.1:76863014-76863033 | MS.gene061506:intron | 45.0% |
!! | CATGATATTTTAGAGGGGGG+GGG | - | chr6.1:76863013-76863032 | MS.gene061506:CDS | 45.0% |
!! | GAGTTGTTGACTCCATGGTT+CGG | + | chr6.1:76860584-76860603 | None:intergenic | 45.0% |
!! | GCATGATATTTTAGAGGGGG+GGG | - | chr6.1:76863012-76863031 | MS.gene061506:CDS | 45.0% |
!! | GCTCTTGGGGCACTTTTTAA+GGG | - | chr6.1:76862696-76862715 | MS.gene061506:intron | 45.0% |
!! | TGCTCTTGGGGCACTTTTTA+AGG | - | chr6.1:76862695-76862714 | MS.gene061506:intron | 45.0% |
!! | TAATTAAATAATTGAATTAA+TGG | - | chr6.1:76863483-76863502 | MS.gene061506:intron | 5.0% |
!! | TAATTAAATATTATAAAACA+TGG | + | chr6.1:76861501-76861520 | None:intergenic | 5.0% |
!!! | TTATTAATTTTTCTATAATA+TGG | - | chr6.1:76860800-76860819 | MS.gene061506:intron | 5.0% |
AAAGGAGGAGGTTGTGGAGA+TGG | + | chr6.1:76860466-76860485 | None:intergenic | 50.0% | |
ACCCTGGTCAGGTAATCCTT+TGG | - | chr6.1:76865050-76865069 | MS.gene061506:CDS | 50.0% | |
ATCAAGAGCTTCCCGAACCA+TGG | - | chr6.1:76860569-76860588 | MS.gene061506:intron | 50.0% | |
ATTACCTGACCAGGGTCTTC+AGG | + | chr6.1:76865046-76865065 | None:intergenic | 50.0% | |
GAAGAGGAAAGCAGCTGAAG+AGG | - | chr6.1:76865302-76865321 | MS.gene061506:intron | 50.0% | |
TTACCTGACCAGGGTCTTCA+GGG | + | chr6.1:76865045-76865064 | None:intergenic | 50.0% | |
TTGAAGGGGTGGAATTGTGG+GGG | - | chr6.1:76861044-76861063 | MS.gene061506:intron | 50.0% | |
!! | TGATATTTTAGAGGGGGGGG+GGG | - | chr6.1:76863015-76863034 | MS.gene061506:intron | 50.0% |
ATTCCCTGAAGACCCTGGTC+AGG | - | chr6.1:76865039-76865058 | MS.gene061506:CDS | 55.0% | |
CAACACGGTGATCTGTGTCG+CGG | - | chr6.1:76861773-76861792 | MS.gene061506:intron | 55.0% | |
GATTATTGGGCACCTGCCCT+AGG | - | chr6.1:76865703-76865722 | MS.gene061506:CDS | 55.0% | |
!! | ATATTTTAGAGGGGGGGGGG+GGG | - | chr6.1:76863017-76863036 | MS.gene061506:intron | 55.0% |
!! | GATATTTTAGAGGGGGGGGG+GGG | - | chr6.1:76863016-76863035 | MS.gene061506:intron | 55.0% |
ACCGAAAGCCTCCTCCTCCT+AGG | + | chr6.1:76865723-76865742 | None:intergenic | 60.0% | |
CCCTAGGAGGAGGAGGCTTT+CGG | - | chr6.1:76865719-76865738 | MS.gene061506:CDS | 60.0% | |
CCGAAAGCCTCCTCCTCCTA+GGG | + | chr6.1:76865722-76865741 | None:intergenic | 60.0% | |
GGAGGAGGTTGTGGAGATGG+TGG | + | chr6.1:76860463-76860482 | None:intergenic | 60.0% | |
TATTGGGCACCTGCCCTAGG+AGG | - | chr6.1:76865706-76865725 | MS.gene061506:CDS | 60.0% | |
!! | TATTTTAGAGGGGGGGGGGG+GGG | - | chr6.1:76863018-76863037 | MS.gene061506:intron | 60.0% |
AAGCCTCCTCCTCCTAGGGC+AGG | + | chr6.1:76865718-76865737 | None:intergenic | 65.0% | |
!! | ATTTTAGAGGGGGGGGGGGG+GGG | - | chr6.1:76863019-76863038 | MS.gene061506:intron | 65.0% |
GCACCTGCCCTAGGAGGAGG+AGG | - | chr6.1:76865712-76865731 | MS.gene061506:CDS | 70.0% | |
TGGGCACCTGCCCTAGGAGG+AGG | - | chr6.1:76865709-76865728 | MS.gene061506:CDS | 70.0% | |
!! | TTTTAGAGGGGGGGGGGGGG+GGG | - | chr6.1:76863020-76863039 | MS.gene061506:intron | 70.0% |
TTTAGAGGGGGGGGGGGGGG+GGG | - | chr6.1:76863021-76863040 | MS.gene061506:intron | 75.0% | |
! | TTAGAGGGGGGGGGGGGGGG+GGG | - | chr6.1:76863022-76863041 | MS.gene061506:intron | 80.0% |
! | AGGGGGGGGGGGGGGGGGGC+AGG | - | chr6.1:76863026-76863045 | MS.gene061506:intron | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 76860415 | 76865744 | 76860415 | ID=MS.gene061506 |
chr6.1 | mRNA | 76860415 | 76865744 | 76860415 | ID=MS.gene061506.t1;Parent=MS.gene061506 |
chr6.1 | exon | 76865554 | 76865744 | 76865554 | ID=MS.gene061506.t1.exon1;Parent=MS.gene061506.t1 |
chr6.1 | CDS | 76865554 | 76865744 | 76865554 | ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1 |
chr6.1 | exon | 76864860 | 76865109 | 76864860 | ID=MS.gene061506.t1.exon2;Parent=MS.gene061506.t1 |
chr6.1 | CDS | 76864860 | 76865109 | 76864860 | ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1 |
chr6.1 | exon | 76864153 | 76864227 | 76864153 | ID=MS.gene061506.t1.exon3;Parent=MS.gene061506.t1 |
chr6.1 | CDS | 76864153 | 76864227 | 76864153 | ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1 |
chr6.1 | exon | 76863810 | 76863875 | 76863810 | ID=MS.gene061506.t1.exon4;Parent=MS.gene061506.t1 |
chr6.1 | CDS | 76863810 | 76863875 | 76863810 | ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1 |
chr6.1 | exon | 76862967 | 76863032 | 76862967 | ID=MS.gene061506.t1.exon5;Parent=MS.gene061506.t1 |
chr6.1 | CDS | 76862967 | 76863032 | 76862967 | ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1 |
chr6.1 | exon | 76862764 | 76862820 | 76862764 | ID=MS.gene061506.t1.exon6;Parent=MS.gene061506.t1 |
chr6.1 | CDS | 76862764 | 76862820 | 76862764 | ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1 |
chr6.1 | exon | 76861099 | 76861143 | 76861099 | ID=MS.gene061506.t1.exon7;Parent=MS.gene061506.t1 |
chr6.1 | CDS | 76861099 | 76861143 | 76861099 | ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1 |
chr6.1 | exon | 76860836 | 76860877 | 76860836 | ID=MS.gene061506.t1.exon8;Parent=MS.gene061506.t1 |
chr6.1 | CDS | 76860836 | 76860877 | 76860836 | ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1 |
chr6.1 | exon | 76860415 | 76860552 | 76860415 | ID=MS.gene061506.t1.exon9;Parent=MS.gene061506.t1 |
chr6.1 | CDS | 76860415 | 76860552 | 76860415 | ID=cds.MS.gene061506.t1;Parent=MS.gene061506.t1 |
Gene Sequence |
Protein sequence |