AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06858


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06858.t1 MTR_3g092140 98.352 364 5 1 1 364 1 363 0.0 734
MS.gene06858.t1 MTR_3g092140 63.636 66 12 1 311 364 445 510 3.96e-15 77.0
MS.gene06858.t1 MTR_3g449790 40.979 327 179 7 35 352 33 354 1.14e-77 244
MS.gene06858.t1 MTR_3g449790 40.367 327 175 7 35 352 33 348 5.02e-77 242
MS.gene06858.t1 MTR_7g114990 26.786 336 211 12 33 352 4 320 6.98e-26 107
MS.gene06858.t1 MTR_7g114980 28.923 325 189 11 45 350 21 322 9.65e-26 106
MS.gene06858.t1 MTR_7g115010 29.355 310 176 13 47 346 21 297 5.24e-25 104
MS.gene06858.t1 MTR_1g102750 27.761 335 197 14 36 350 4 313 1.28e-24 103
MS.gene06858.t1 MTR_7g021850 28.523 298 170 12 72 350 38 311 1.45e-24 103
MS.gene06858.t1 MTR_7g021680 27.703 296 174 12 72 350 38 310 4.26e-22 96.3
MS.gene06858.t1 MTR_7g021820 27.703 296 174 12 72 350 38 310 4.26e-22 96.3
MS.gene06858.t1 MTR_7g114970 25.526 333 201 14 39 350 9 315 4.53e-21 93.6
MS.gene06858.t1 MTR_7g114980 28.136 295 170 11 45 320 21 292 9.21e-20 89.0
MS.gene06858.t1 MTR_1g102750 27.869 305 175 14 36 320 4 283 3.89e-19 87.4
MS.gene06858.t1 MTR_6g073110 25.424 295 171 8 72 351 34 294 1.51e-17 82.8
MS.gene06858.t1 MTR_1g042730 25.278 360 201 12 16 334 57 389 2.67e-17 83.2
MS.gene06858.t1 MTR_4g072320 25.890 309 176 11 74 366 30 301 1.65e-16 79.7
MS.gene06858.t1 MTR_8g088160 29.963 267 140 11 45 278 49 301 1.92e-16 79.7
MS.gene06858.t1 MTR_7g114970 25.083 303 180 14 39 320 9 285 8.03e-15 74.7
MS.gene06858.t1 MTR_4g072350 23.810 315 182 11 73 369 35 309 2.95e-14 73.2
MS.gene06858.t1 MTR_7g070500 23.276 348 195 10 46 375 22 315 4.75e-14 72.8
MS.gene06858.t1 MTR_7g114970 24.834 302 180 14 39 319 9 284 5.82e-14 72.0
MS.gene06858.t1 MTR_7g114970 25.000 224 144 8 138 350 11 221 7.79e-14 71.2
MS.gene06858.t1 MTR_7g114970 26.667 180 111 6 182 350 4 173 6.26e-13 67.4
MS.gene06858.t1 MTR_4g021350 29.570 186 101 6 177 362 138 293 1.39e-12 68.2
MS.gene06858.t1 MTR_7g070500 23.220 323 180 8 46 352 22 292 1.45e-12 68.2
MS.gene06858.t1 MTR_4g021350 30.508 177 96 5 177 353 138 287 1.73e-12 67.8
MS.gene06858.t1 MTR_3g083130 23.569 297 170 11 80 359 45 301 3.10e-12 67.4
MS.gene06858.t1 MTR_0374s0050 23.478 345 193 12 26 351 5 297 6.06e-12 66.2
MS.gene06858.t1 MTR_2g085125 23.577 246 159 8 82 311 91 323 1.80e-11 65.5
MS.gene06858.t1 MTR_4g072060 23.509 285 164 9 80 343 33 284 2.66e-11 64.3
MS.gene06858.t1 MTR_4g092750 24.917 301 183 13 45 333 11 280 3.29e-11 64.3
MS.gene06858.t1 MTR_8g070095 24.179 335 185 14 47 362 16 300 6.04e-11 63.5
MS.gene06858.t1 MTR_4g021410 26.984 189 109 5 177 365 56 215 9.47e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06858.t1 AT5G53580 74.044 366 89 3 1 364 3 364 0.0 570
MS.gene06858.t1 AT1G06690 39.233 339 180 8 29 352 38 365 4.19e-77 243
MS.gene06858.t1 AT1G60680 27.528 356 210 16 38 369 8 339 1.04e-23 100
MS.gene06858.t1 AT1G60710 28.614 332 195 15 38 351 8 315 5.82e-23 99.0
MS.gene06858.t1 AT1G10810 28.440 327 194 16 38 347 8 311 1.15e-21 95.1
MS.gene06858.t1 AT1G60750 27.795 331 193 15 33 351 4 300 2.47e-21 94.0
MS.gene06858.t1 AT1G04690 27.273 341 209 15 36 356 2 323 4.08e-21 93.2
MS.gene06858.t1 AT1G60690 27.219 338 200 16 34 351 4 315 2.38e-20 91.3
MS.gene06858.t1 AT1G60730 26.807 332 201 15 38 351 8 315 1.97e-19 89.0
MS.gene06858.t1 AT1G04420 25.641 312 169 13 5 266 9 307 5.95e-15 76.3
MS.gene06858.t1 AT1G10810 27.826 230 137 10 38 259 8 216 1.82e-14 73.2
MS.gene06858.t1 AT2G27680 27.500 240 154 9 39 273 48 272 3.71e-13 70.5
MS.gene06858.t1 AT2G37760 23.826 298 179 11 80 364 34 296 1.29e-12 68.6
MS.gene06858.t1 AT2G37760 23.826 298 179 11 80 364 34 296 1.29e-12 68.6
MS.gene06858.t1 AT2G37770 25.092 271 157 9 80 338 38 274 1.53e-12 68.2
MS.gene06858.t1 AT5G01670 23.032 343 200 10 47 375 24 316 2.36e-12 67.8
MS.gene06858.t1 AT2G37760 23.958 288 171 11 77 351 31 283 3.00e-12 67.0
MS.gene06858.t1 AT2G37760 23.958 288 171 11 77 351 31 283 3.00e-12 67.0
MS.gene06858.t1 AT2G37760 23.958 288 171 11 77 351 31 283 3.26e-12 67.0
MS.gene06858.t1 AT1G59950 23.750 320 189 10 73 375 33 314 1.92e-11 65.1
MS.gene06858.t1 AT2G37760 23.529 255 157 8 121 364 23 250 3.00e-11 63.9
MS.gene06858.t1 AT2G37760 23.529 255 157 8 121 364 23 250 3.00e-11 63.9
MS.gene06858.t1 AT2G21250 21.429 294 159 8 80 343 33 284 3.38e-11 63.9

Find 93 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCTTGAGCTTCTGGTTT+TGG 0.082289 3.1:+74157166 None:intergenic
CATGGGGTAATCAGCTTCTT+TGG 0.155060 3.1:-74157104 MS.gene06858:CDS
ATGGGGTAATCAGCTTCTTT+GGG 0.218078 3.1:-74157103 MS.gene06858:CDS
AACACAAGCAGAGGAAAATT+TGG 0.222359 3.1:-74153871 MS.gene06858:CDS
TATGGTACTGGAAGGTTTAA+TGG 0.252604 3.1:-74156991 MS.gene06858:CDS
GAGGCCCCATCTTGAGCTTC+TGG 0.254268 3.1:+74157160 None:intergenic
CCTTGGTCCAGTTGGAAGTT+TGG 0.261270 3.1:+74155289 None:intergenic
TTTGATACTGCTGATTCTTA+TGG 0.261312 3.1:-74157009 MS.gene06858:CDS
ATGCACTTCCTCAGAGAAAA+AGG 0.266564 3.1:-74156444 MS.gene06858:intron
CAGTCTGCAACTTGTGCTGC+TGG 0.289543 3.1:+74153627 None:intergenic
CTAGGACTTGGAATGCTTAC+TGG 0.291744 3.1:-74155326 MS.gene06858:CDS
TTGGGGCTATCAAGAATCTA+TGG 0.317047 3.1:-74157085 MS.gene06858:CDS
AGGATGCAGATTGAGCAAAT+TGG 0.320844 3.1:-74156162 MS.gene06858:CDS
CAAGAGTATATGTGATTCTC+TGG 0.332996 3.1:-74155375 MS.gene06858:CDS
CTATTTAAGCAAATACTTCC+AGG 0.333869 3.1:-74155151 MS.gene06858:CDS
GGTCAGAGTGAGAAACTTCT+TGG 0.342488 3.1:-74156970 MS.gene06858:CDS
AGAGGAAAATTTGGGTGCTC+TGG 0.361866 3.1:-74153862 MS.gene06858:CDS
GGCAGTTTGTCGATGCTTGC+AGG 0.365238 3.1:-74156358 MS.gene06858:intron
AGTGTGTCTCCAATGGGTTT+TGG 0.366328 3.1:-74157135 MS.gene06858:CDS
GCCTCTCAGTGTGTCTCCAA+TGG 0.369900 3.1:-74157142 MS.gene06858:CDS
ATTGACTTGACTCCAGGAAT+TGG 0.370976 3.1:+74153894 None:intergenic
TTATCCATGGCGCCTTACAC+CGG 0.374534 3.1:-74156381 MS.gene06858:CDS
TGTATCTTCAAAAGCTGCTT+TGG 0.383259 3.1:+74155860 None:intergenic
TATGTCAGGTTGCAATAAAT+TGG 0.388740 3.1:-74153938 MS.gene06858:intron
TCTCTCAGGGAACTCAATAA+AGG 0.394660 3.1:+74155121 None:intergenic
GCTGTTGGAGTAAGTAATTA+TGG 0.402781 3.1:-74155884 MS.gene06858:CDS
AGCTCTTTGGGATGGTTTAG+TGG 0.402880 3.1:-74156088 MS.gene06858:CDS
TTGCAATCACAATTTCATTC+CGG 0.403716 3.1:+74156417 None:intergenic
AGTCTGCAACTTGTGCTGCT+GGG 0.426650 3.1:+74153628 None:intergenic
CCTCTCAGTGTGTCTCCAAT+GGG 0.426743 3.1:-74157141 MS.gene06858:CDS
CTTTCAGGGCATCACTAGAT+AGG 0.427874 3.1:-74156182 MS.gene06858:intron
AAAGGTACAATTCCAATTCC+TGG 0.430013 3.1:-74153906 MS.gene06858:CDS
GGATGCAGATTGAGCAAATT+GGG 0.430878 3.1:-74156161 MS.gene06858:CDS
TATCCATGGCGCCTTACACC+GGG 0.443229 3.1:-74156380 MS.gene06858:CDS
CGACAAACTGCCCCGGTGTA+AGG 0.445202 3.1:+74156369 None:intergenic
CAAAGAGCTAATTCTTGAAA+AGG 0.445627 3.1:+74156102 None:intergenic
TTTAGTGGCAATGTATGATA+AGG 0.450190 3.1:-74156073 MS.gene06858:intron
ACACAAGCAGAGGAAAATTT+GGG 0.461452 3.1:-74153870 MS.gene06858:CDS
CAACTGAAGTAGCTCGTTTG+AGG 0.463411 3.1:+74153827 None:intergenic
GCTTATAGTCCTCTAGGACT+TGG 0.463947 3.1:-74155338 MS.gene06858:CDS
CAAAACCAGAAGCTCAAGAT+GGG 0.467300 3.1:-74157165 MS.gene06858:CDS
CAAAATTTGCTGCTTATCCA+TGG 0.468933 3.1:-74156394 MS.gene06858:CDS
ACTGCTGATTCTTATGGTAC+TGG 0.471003 3.1:-74157003 MS.gene06858:CDS
TGTGTTATTGACTTGACTCC+AGG 0.471797 3.1:+74153888 None:intergenic
CAGGGTTTAGTTCAAGCTGT+TGG 0.471881 3.1:-74155899 MS.gene06858:CDS
CTTTCAAATTCCCTTCCCTA+TGG 0.474412 3.1:-74157200 MS.gene06858:CDS
TCAGCATCCAAACTTCCAAC+TGG 0.478271 3.1:-74155296 MS.gene06858:CDS
CCAAAACCAGAAGCTCAAGA+TGG 0.478838 3.1:-74157166 MS.gene06858:CDS
CTCAATAAAGGATCCAGTCC+TGG 0.487530 3.1:+74155133 None:intergenic
CAGCACAGCAATCGCCTCGC+AGG 0.488464 3.1:-74153797 MS.gene06858:CDS
GAGGAAAATTTGGGTGCTCT+GGG 0.495873 3.1:-74153861 MS.gene06858:CDS
CTCAAACGAGCTACTTCAGT+TGG 0.502646 3.1:-74153826 MS.gene06858:CDS
TTTGGGTGGATGATGGCCAT+AGG 0.506984 3.1:+74157184 None:intergenic
TAAGCAAATACTTCCAGGAC+TGG 0.510322 3.1:-74155146 MS.gene06858:CDS
AAAATTTGGGTGCTCTGGGT+TGG 0.513121 3.1:-74153857 MS.gene06858:CDS
GTCTGCAACTTGTGCTGCTG+GGG 0.518695 3.1:+74153629 None:intergenic
GTAATTGCTTATAGTCCTCT+AGG 0.521768 3.1:-74155344 MS.gene06858:CDS
TTTATTTGCAATATCTCTCA+GGG 0.524302 3.1:+74155108 None:intergenic
TTTGAAAGGAAACGATGGTA+AGG 0.524982 3.1:+74157215 None:intergenic
TAGGACTTGGAATGCTTACT+GGG 0.528436 3.1:-74155325 MS.gene06858:CDS
GTCAGAGTGAGAAACTTCTT+GGG 0.529492 3.1:-74156969 MS.gene06858:CDS
TGGGGTAATCAGCTTCTTTG+GGG 0.531621 3.1:-74157102 MS.gene06858:CDS
GTGGATGATGGCCATAGGGA+AGG 0.533632 3.1:+74157189 None:intergenic
TTGGGTGGATGATGGCCATA+GGG 0.533850 3.1:+74157185 None:intergenic
TTTAACATGGCTGTTGAGAA+TGG 0.534752 3.1:-74157042 MS.gene06858:CDS
TGGATGATGGCCATAGGGAA+GGG 0.537699 3.1:+74157190 None:intergenic
CAAGAATTAGCTCTTTGGGA+TGG 0.548031 3.1:-74156096 MS.gene06858:CDS
TTGGGATAGGACAACTGCAT+TGG 0.550671 3.1:-74156143 MS.gene06858:CDS
TTGAAAGGAAACGATGGTAA+GGG 0.554712 3.1:+74157216 None:intergenic
CAGATTGAGCAAATTGGGAT+AGG 0.555313 3.1:-74156156 MS.gene06858:CDS
TGCCCCGGTGTAAGGCGCCA+TGG 0.557026 3.1:+74156377 None:intergenic
TGAAAGGAAACGATGGTAAG+GGG 0.563502 3.1:+74157217 None:intergenic
CTGATTCTTATGGTACTGGA+AGG 0.564524 3.1:-74156999 MS.gene06858:CDS
AAACGAGCTACTTCAGTTGG+AGG 0.564890 3.1:-74153823 MS.gene06858:CDS
GCCCAAGTTCCAAAACCCAT+TGG 0.565398 3.1:+74157126 None:intergenic
TCAACACACCTTGGTCCAGT+TGG 0.576474 3.1:+74155281 None:intergenic
CATAGGGAAGGGAATTTGAA+AGG 0.580453 3.1:+74157201 None:intergenic
TCTACCTGGGCTGAGCATAA+CGG 0.585242 3.1:+74155812 None:intergenic
CAAGCATCGACAAACTGCCC+CGG 0.589208 3.1:+74156362 None:intergenic
ATAAATTGGTGCATATGCAA+AGG 0.597596 3.1:-74153924 MS.gene06858:CDS
AAGACGCAAAACCATGTCAC+AGG 0.598290 3.1:-74155086 MS.gene06858:intron
CAAGTCAATAACACAAGCAG+AGG 0.602257 3.1:-74153880 MS.gene06858:CDS
AAGAGTATATGTGATTCTCT+GGG 0.616987 3.1:-74155374 MS.gene06858:CDS
GGGAATTTGAAAGGAAACGA+TGG 0.617876 3.1:+74157210 None:intergenic
CCTTCAGCAAGTGTTTAACA+TGG 0.622260 3.1:-74157055 MS.gene06858:CDS
AGTTCCGTTATGCTCAGCCC+AGG 0.622502 3.1:-74155816 MS.gene06858:intron
ATCCATGGCGCCTTACACCG+GGG 0.629680 3.1:-74156379 MS.gene06858:CDS
CCATGTTAAACACTTGCTGA+AGG 0.643305 3.1:+74157055 None:intergenic
CCAAACTTCCAACTGGACCA+AGG 0.674362 3.1:-74155289 MS.gene06858:intron
CTGAGCATAACGGAACTCCA+CGG 0.675511 3.1:+74155822 None:intergenic
AAAACCAGAAGCTCAAGATG+GGG 0.683749 3.1:-74157164 MS.gene06858:CDS
CCCATTGGAGACACACTGAG+AGG 0.699929 3.1:+74157141 None:intergenic
GTAAGCATTCCAAGTCCTAG+AGG 0.710131 3.1:+74155329 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGTTAAAATGATTAA+TGG + chr3.1:74155447-74155466 None:intergenic 10.0%
!! ATAATAGATTATTCAATTAA+AGG - chr3.1:74156608-74156627 MS.gene06858:intron 10.0%
!!! TTTATGTCTTTATTTTATAT+TGG - chr3.1:74154970-74154989 MS.gene06858:intron 10.0%
!! AATAATTCATGTTTAATACT+AGG - chr3.1:74154850-74154869 MS.gene06858:intron 15.0%
!! GTTAAATTATACCAAATTAA+AGG + chr3.1:74153994-74154013 None:intergenic 15.0%
!! TACATTTAACATTGATAAAA+AGG + chr3.1:74154039-74154058 None:intergenic 15.0%
!!! ATATTTAGAACATTATTAAG+TGG - chr3.1:74155649-74155668 MS.gene06858:intron 15.0%
!!! TTTAACAATTTTAACATTTC+AGG - chr3.1:74155455-74155474 MS.gene06858:intron 15.0%
!! AACAAAAAAGGAAAATGATA+AGG - chr3.1:74155233-74155252 MS.gene06858:intron 20.0%
!! AGACAATGAATTTATTTGAT+CGG + chr3.1:74156923-74156942 None:intergenic 20.0%
!! AGTAAAGCAAATATTTGTAA+TGG + chr3.1:74154659-74154678 None:intergenic 20.0%
!! ATTTATACACAAAATGCTAA+AGG + chr3.1:74155885-74155904 None:intergenic 20.0%
!! CTCAATTAGGTTATTTATAA+TGG - chr3.1:74154145-74154164 MS.gene06858:intron 20.0%
!! GGAAAATAAAATCTACAAAA+TGG + chr3.1:74156279-74156298 None:intergenic 20.0%
!! TAATTCCACATTAGATAAAA+TGG + chr3.1:74156181-74156200 None:intergenic 20.0%
!! TTAAGAAACTACAACAAAAA+AGG - chr3.1:74155221-74155240 MS.gene06858:intron 20.0%
!! TTATCCAGTTTATCAATTAT+AGG - chr3.1:74157157-74157176 MS.gene06858:CDS 20.0%
!! TTGATTAATGTGAAAATTAC+AGG + chr3.1:74156339-74156358 None:intergenic 20.0%
!! TTTATACACAAAATGCTAAA+GGG + chr3.1:74155884-74155903 None:intergenic 20.0%
!! TTTATTAACCTTGAAATATC+TGG + chr3.1:74157183-74157202 None:intergenic 20.0%
!!! AACACAACTTACTTTTTTAA+AGG - chr3.1:74156793-74156812 MS.gene06858:intron 20.0%
!!! ATCATACTTTTCCTTTAATT+TGG - chr3.1:74153980-74153999 MS.gene06858:intron 20.0%
!!! TAACATTCAAATTTTGCTTT+TGG - chr3.1:74155129-74155148 MS.gene06858:CDS 20.0%
!!! TGATTTGCAATTAATAACAA+AGG + chr3.1:74155715-74155734 None:intergenic 20.0%
!!! TGTTTTGATATAAGCTATTA+TGG - chr3.1:74154281-74154300 MS.gene06858:intron 20.0%
!!! TTAATCCATTTTATCTAATG+TGG - chr3.1:74156173-74156192 MS.gene06858:CDS 20.0%
!!! TTAGCATCATTAACTTTTTT+TGG - chr3.1:74155685-74155704 MS.gene06858:intron 20.0%
!!! TTTTTTGTTGTAGTTTCTTA+AGG + chr3.1:74155222-74155241 None:intergenic 20.0%
! AAATATTAGTGTGATGAAAG+AGG - chr3.1:74154058-74154077 MS.gene06858:intron 25.0%
! AAATGCCAATATTAAAAACC+CGG - chr3.1:74156536-74156555 MS.gene06858:intron 25.0%
! AATAAGCTTAAAACAACTCA+AGG - chr3.1:74154315-74154334 MS.gene06858:intron 25.0%
! AGTGAATGAATTGACATTTA+AGG + chr3.1:74156754-74156773 None:intergenic 25.0%
! ATAATGACAGCATAATTTGA+AGG + chr3.1:74155382-74155401 None:intergenic 25.0%
! GACAATGAATTTATTTGATC+GGG + chr3.1:74156922-74156941 None:intergenic 25.0%
! GATTAAAAGAAAGATACGTA+TGG + chr3.1:74156159-74156178 None:intergenic 25.0%
! GTTATTAATTGCAAATCACA+GGG - chr3.1:74155717-74155736 MS.gene06858:intron 25.0%
! TAAAAAAGAACGAAAGTAGT+AGG + chr3.1:74155856-74155875 None:intergenic 25.0%
! TAATATCATTCAGTCAGAAT+AGG + chr3.1:74154587-74154606 None:intergenic 25.0%
! TAGTCACTAATGAGATTAAA+AGG + chr3.1:74155162-74155181 None:intergenic 25.0%
! TGTTATTAATTGCAAATCAC+AGG - chr3.1:74155716-74155735 MS.gene06858:intron 25.0%
! TTATACACAAAATGCTAAAG+GGG + chr3.1:74155883-74155902 None:intergenic 25.0%
! TTATTAATTGCAAATCACAG+GGG - chr3.1:74155718-74155737 MS.gene06858:intron 25.0%
! TTGAATGAAATGAACTTTCA+GGG - chr3.1:74154700-74154719 MS.gene06858:intron 25.0%
! TTTAATACTAGGATCACATT+AGG - chr3.1:74154861-74154880 MS.gene06858:intron 25.0%
! TTTATTTGCAATATCTCTCA+GGG + chr3.1:74155791-74155810 None:intergenic 25.0%
!! AACCATACTTTAAAGACATT+TGG - chr3.1:74154893-74154912 MS.gene06858:intron 25.0%
!! AATGTGAAAATTACAGGTTT+TGG + chr3.1:74156333-74156352 None:intergenic 25.0%
!! ACCATACTTTAAAGACATTT+GGG - chr3.1:74154894-74154913 MS.gene06858:intron 25.0%
!! TTCATTTCATTCAAGTTCAA+TGG + chr3.1:74154694-74154713 None:intergenic 25.0%
!!! AAGGCATTTTTTTTATCAGT+AGG - chr3.1:74156046-74156065 MS.gene06858:intron 25.0%
!!! ACCTGGTTTGAAAAATATTT+TGG + chr3.1:74157130-74157149 None:intergenic 25.0%
!!! ATATGGATTATGGATTAGAT+TGG - chr3.1:74154092-74154111 MS.gene06858:intron 25.0%
!!! TCCAAAATATTTTTCAAACC+AGG - chr3.1:74157126-74157145 MS.gene06858:CDS 25.0%
!!! TTATTTTATATTGGCATCCA+GGG - chr3.1:74154979-74154998 MS.gene06858:intron 25.0%
!!! TTTATTTTATATTGGCATCC+AGG - chr3.1:74154978-74154997 MS.gene06858:intron 25.0%
!!! TTTTATTTGCAATATCTCTC+AGG + chr3.1:74155792-74155811 None:intergenic 25.0%
!!! TTTTCAAGAATTAGCTCTTT+GGG - chr3.1:74154796-74154815 MS.gene06858:intron 25.0%
AGTAGTAGTGTACAAAAGAT+TGG + chr3.1:74156494-74156513 None:intergenic 30.0%
ATAAATTGGTGCATATGCAA+AGG - chr3.1:74156972-74156991 MS.gene06858:CDS 30.0%
ATTATAGGCCAGATATTTCA+AGG - chr3.1:74157172-74157191 MS.gene06858:CDS 30.0%
CAAAGAGCTAATTCTTGAAA+AGG + chr3.1:74154797-74154816 None:intergenic 30.0%
CGAAAGTAGTAGGTAAAAAT+AGG + chr3.1:74155846-74155865 None:intergenic 30.0%
CTATTTAAGCAAATACTTCC+AGG - chr3.1:74155745-74155764 MS.gene06858:intron 30.0%
CTTGAATGAAATGAACTTTC+AGG - chr3.1:74154699-74154718 MS.gene06858:intron 30.0%
TCATTAGTGACTAATAACCA+TGG - chr3.1:74155169-74155188 MS.gene06858:intron 30.0%
TTGCAATCACAATTTCATTC+CGG + chr3.1:74154482-74154501 None:intergenic 30.0%
TTTAGTGGCAATGTATGATA+AGG - chr3.1:74154823-74154842 MS.gene06858:intron 30.0%
TTTGACTGTCAATTCATTTG+AGG - chr3.1:74155951-74155970 MS.gene06858:intron 30.0%
! AAGAGTATATGTGATTCTCT+GGG - chr3.1:74155522-74155541 MS.gene06858:intron 30.0%
! AAGTTCATTCAAGATTTTCG+AGG - chr3.1:74153950-74153969 MS.gene06858:intron 30.0%
! AATTTTCTTTGCTAAGCATG+GGG - chr3.1:74155481-74155500 MS.gene06858:intron 30.0%
! AGAGATGATGATATGGATTA+TGG - chr3.1:74154082-74154101 MS.gene06858:intron 30.0%
! CAATTTTCTTTGCTAAGCAT+GGG - chr3.1:74155480-74155499 MS.gene06858:intron 30.0%
! CACTTTTCTTTTAGTCATTC+TGG + chr3.1:74155356-74155375 None:intergenic 30.0%
! CATTTAAGGTTTGTCTTCTT+TGG + chr3.1:74156740-74156759 None:intergenic 30.0%
! CCATACTTTAAAGACATTTG+GGG - chr3.1:74154895-74154914 MS.gene06858:intron 30.0%
! GATTAGATTGGATTGGAAAA+GGG - chr3.1:74154104-74154123 MS.gene06858:intron 30.0%
! GGGTTTTTAATATTGGCATT+TGG + chr3.1:74156537-74156556 None:intergenic 30.0%
! TATGTCAGGTTGCAATAAAT+TGG - chr3.1:74156958-74156977 MS.gene06858:CDS 30.0%
!! CTTTTCAAGAATTAGCTCTT+TGG - chr3.1:74154795-74154814 MS.gene06858:intron 30.0%
!! GAATAGTTCTGATGTTGTTA+CGG + chr3.1:74156693-74156712 None:intergenic 30.0%
!! GATTATGGATTAGATTGGAT+TGG - chr3.1:74154097-74154116 MS.gene06858:intron 30.0%
!! TTGGTTGGTCTTTCTTTAAA+GGG + chr3.1:74156829-74156848 None:intergenic 30.0%
!! TTTGATACTGCTGATTCTTA+TGG - chr3.1:74153887-74153906 MS.gene06858:CDS 30.0%
AAATATGTTCCAAGCCTGAA+GGG - chr3.1:74155979-74155998 MS.gene06858:intron 35.0%
AACAATAGTGCTAGTGAATG+GGG - chr3.1:74156221-74156240 MS.gene06858:intron 35.0%
AACACAAGCAGAGGAAAATT+TGG - chr3.1:74157025-74157044 MS.gene06858:CDS 35.0%
AACTGGATAACATGTATACC+TGG + chr3.1:74157147-74157166 None:intergenic 35.0%
AAGAGGAAGAGATGATGATA+TGG - chr3.1:74154075-74154094 MS.gene06858:intron 35.0%
AAGTTATGTTCTCCAGAAGA+TGG + chr3.1:74156416-74156435 None:intergenic 35.0%
ACACAAGCAGAGGAAAATTT+GGG - chr3.1:74157026-74157045 MS.gene06858:CDS 35.0%
ACTATTCCCACTTCATTATC+AGG - chr3.1:74156706-74156725 MS.gene06858:intron 35.0%
AGACCAAGGCAATAAATGAA+CGG + chr3.1:74155412-74155431 None:intergenic 35.0%
AGGCGATATATAGCTCAATT+AGG - chr3.1:74154132-74154151 MS.gene06858:intron 35.0%
AGTCAGTAAGACATGTATGA+AGG + chr3.1:74154173-74154192 None:intergenic 35.0%
AGTTATGTTCTCCAGAAGAT+GGG + chr3.1:74156415-74156434 None:intergenic 35.0%
ATTATCAAGTTCTTCCTACG+CGG - chr3.1:74154629-74154648 MS.gene06858:intron 35.0%
ATTATGCATTACACTCTACC+TGG + chr3.1:74155101-74155120 None:intergenic 35.0%
CAACAATAGTGCTAGTGAAT+GGG - chr3.1:74156220-74156239 MS.gene06858:intron 35.0%
CATGATTACTTGAAAAACCG+TGG - chr3.1:74155057-74155076 MS.gene06858:intron 35.0%
CTAACTTGACAACTAAACCA+TGG + chr3.1:74155189-74155208 None:intergenic 35.0%
CTGGCCTATAATTGATAAAC+TGG + chr3.1:74157164-74157183 None:intergenic 35.0%
GAAAAAGATTACCTGTGACA+TGG + chr3.1:74155824-74155843 None:intergenic 35.0%
GCTGTTGGAGTAAGTAATTA+TGG - chr3.1:74155012-74155031 MS.gene06858:intron 35.0%
GTAATTGCTTATAGTCCTCT+AGG - chr3.1:74155552-74155571 MS.gene06858:intron 35.0%
TAAATATGTTCCAAGCCTGA+AGG - chr3.1:74155978-74155997 MS.gene06858:intron 35.0%
TAAGAACTTGCGAAACTGTT+TGG + chr3.1:74154377-74154396 None:intergenic 35.0%
TATCTTGCATGAGTGGTTTA+AGG - chr3.1:74156027-74156046 MS.gene06858:intron 35.0%
TCTCATTCAGAAACTCAATG+AGG + chr3.1:74155309-74155328 None:intergenic 35.0%
TGAATTTATTTGATCGGGCA+AGG + chr3.1:74156917-74156936 None:intergenic 35.0%
TGTATCTTCAAAAGCTGCTT+TGG + chr3.1:74155039-74155058 None:intergenic 35.0%
TTAAGGTTTGTCTTCTTTGG+TGG + chr3.1:74156737-74156756 None:intergenic 35.0%
TTATCAGTAGGAATCGTACT+TGG - chr3.1:74156058-74156077 MS.gene06858:intron 35.0%
TTATGCATTACACTCTACCT+GGG + chr3.1:74155100-74155119 None:intergenic 35.0%
TTGAAAGGAAACGATGGTAA+GGG + chr3.1:74153683-74153702 None:intergenic 35.0%
TTTAACATGGCTGTTGAGAA+TGG - chr3.1:74153854-74153873 MS.gene06858:CDS 35.0%
TTTGAAAGGAAACGATGGTA+AGG + chr3.1:74153684-74153703 None:intergenic 35.0%
! AAACTAAAACCAAGCTCTGA+TGG - chr3.1:74156568-74156587 MS.gene06858:intron 35.0%
! AAAGGTACAATTCCAATTCC+TGG - chr3.1:74156990-74157009 MS.gene06858:CDS 35.0%
! ATTTTCTTTGCTAAGCATGG+GGG - chr3.1:74155482-74155501 MS.gene06858:intron 35.0%
! CAAGAGTATATGTGATTCTC+TGG - chr3.1:74155521-74155540 MS.gene06858:intron 35.0%
! CGTAGGAAGAACTTGATAAT+AGG + chr3.1:74154629-74154648 None:intergenic 35.0%
! GATGATCCTGATAATGAAGT+GGG + chr3.1:74156715-74156734 None:intergenic 35.0%
! GCAATTTTCTTTGCTAAGCA+TGG - chr3.1:74155479-74155498 MS.gene06858:intron 35.0%
! GGATTAGATTGGATTGGAAA+AGG - chr3.1:74154103-74154122 MS.gene06858:intron 35.0%
! TACATGTCTTACTGACTGTT+TGG - chr3.1:74154176-74154195 MS.gene06858:intron 35.0%
! TATGGTACTGGAAGGTTTAA+TGG - chr3.1:74153905-74153924 MS.gene06858:CDS 35.0%
! TTGTGCCGGGTTTTTAATAT+TGG + chr3.1:74156544-74156563 None:intergenic 35.0%
!! CAAAATTTGCTGCTTATCCA+TGG - chr3.1:74154502-74154521 MS.gene06858:intron 35.0%
!! CCCCAAATGTCTTTAAAGTA+TGG + chr3.1:74154898-74154917 None:intergenic 35.0%
!! GTTGGTTGGTCTTTCTTTAA+AGG + chr3.1:74156830-74156849 None:intergenic 35.0%
!! TCATTCAAGATTTTCGAGGT+TGG - chr3.1:74153954-74153973 MS.gene06858:intron 35.0%
!!! GTTTTAGTTTTCTGTTGTGC+CGG + chr3.1:74156558-74156577 None:intergenic 35.0%
!!! TTTTAGTTTTCTGTTGTGCC+GGG + chr3.1:74156557-74156576 None:intergenic 35.0%
AAAACCAGAAGCTCAAGATG+GGG - chr3.1:74153732-74153751 MS.gene06858:intron 40.0%
AATATCACTCAGTTGCTCAG+AGG - chr3.1:74155902-74155921 MS.gene06858:intron 40.0%
ACGCATCACATTGTTATGTC+AGG - chr3.1:74156944-74156963 MS.gene06858:intron 40.0%
AGGATGCAGATTGAGCAAAT+TGG - chr3.1:74154734-74154753 MS.gene06858:intron 40.0%
AGGCAATAAATGAACGGTTG+TGG + chr3.1:74155406-74155425 None:intergenic 40.0%
AGGCTATATGCTTCTTCCTT+CGG - chr3.1:74156459-74156478 MS.gene06858:intron 40.0%
AGTGGTATATCTTGCATGAG+TGG - chr3.1:74156020-74156039 MS.gene06858:intron 40.0%
ATGCACTTCCTCAGAGAAAA+AGG - chr3.1:74154452-74154471 MS.gene06858:intron 40.0%
ATGGGGTAATCAGCTTCTTT+GGG - chr3.1:74153793-74153812 MS.gene06858:CDS 40.0%
CAAAACCAGAAGCTCAAGAT+GGG - chr3.1:74153731-74153750 MS.gene06858:intron 40.0%
CAACCGTTCATTTATTGCCT+TGG - chr3.1:74155406-74155425 MS.gene06858:CDS 40.0%
CAAGTCAATAACACAAGCAG+AGG - chr3.1:74157016-74157035 MS.gene06858:CDS 40.0%
CAGATTGAGCAAATTGGGAT+AGG - chr3.1:74154740-74154759 MS.gene06858:intron 40.0%
CATAGGGAAGGGAATTTGAA+AGG + chr3.1:74153698-74153717 None:intergenic 40.0%
CCAACAATAGTGCTAGTGAA+TGG - chr3.1:74156219-74156238 MS.gene06858:intron 40.0%
CCATTCACTAGCACTATTGT+TGG + chr3.1:74156222-74156241 None:intergenic 40.0%
CCTATTATGCTGTCATACTC+AGG - chr3.1:74156439-74156458 MS.gene06858:intron 40.0%
CCTGAGTATGACAGCATAAT+AGG + chr3.1:74156442-74156461 None:intergenic 40.0%
CCTTCAGCAAGTGTTTAACA+TGG - chr3.1:74153841-74153860 MS.gene06858:CDS 40.0%
CTTTCAAATTCCCTTCCCTA+TGG - chr3.1:74153696-74153715 MS.gene06858:intron 40.0%
GCTCTTGTCAAATAAGTGTG+AGG + chr3.1:74156300-74156319 None:intergenic 40.0%
GGATGCAGATTGAGCAAATT+GGG - chr3.1:74154735-74154754 MS.gene06858:intron 40.0%
GGGAATTTGAAAGGAAACGA+TGG + chr3.1:74153689-74153708 None:intergenic 40.0%
GTCAGAGTGAGAAACTTCTT+GGG - chr3.1:74153927-74153946 MS.gene06858:CDS 40.0%
TAAGCAAATACTTCCAGGAC+TGG - chr3.1:74155750-74155769 MS.gene06858:intron 40.0%
TAGGACAAGGACAGTTATGT+GGG + chr3.1:74156852-74156871 None:intergenic 40.0%
TAGGACTTGGAATGCTTACT+GGG - chr3.1:74155571-74155590 MS.gene06858:intron 40.0%
TCTCTCAGGGAACTCAATAA+AGG + chr3.1:74155778-74155797 None:intergenic 40.0%
TGAAAGGAAACGATGGTAAG+GGG + chr3.1:74153682-74153701 None:intergenic 40.0%
TGCACTTCCTCAGAGAAAAA+GGG - chr3.1:74154453-74154472 MS.gene06858:intron 40.0%
TTGGGGCTATCAAGAATCTA+TGG - chr3.1:74153811-74153830 MS.gene06858:CDS 40.0%
TTGTCAGTTGTAACACACCT+AGG + chr3.1:74156871-74156890 None:intergenic 40.0%
TTTATTTGATCGGGCAAGGT+TGG + chr3.1:74156913-74156932 None:intergenic 40.0%
TTTCTATGACCATCAGAGCT+TGG + chr3.1:74156580-74156599 None:intergenic 40.0%
! AGATTGGATTGGAAAAGGGA+AGG - chr3.1:74154108-74154127 MS.gene06858:intron 40.0%
! CAAGAATTAGCTCTTTGGGA+TGG - chr3.1:74154800-74154819 MS.gene06858:intron 40.0%
! CATTTATTGCCTTGGTCTTC+TGG - chr3.1:74155414-74155433 MS.gene06858:CDS 40.0%
! CCATGTTAAACACTTGCTGA+AGG + chr3.1:74153844-74153863 None:intergenic 40.0%
! CTGATTCTTATGGTACTGGA+AGG - chr3.1:74153897-74153916 MS.gene06858:CDS 40.0%
! GGATGATCCTGATAATGAAG+TGG + chr3.1:74156716-74156735 None:intergenic 40.0%
! TAGACTTCGGTAGTGGTTTA+AGG - chr3.1:74156127-74156146 MS.gene06858:CDS 40.0%
! TTTGTAATGGAATTCCGCGT+AGG + chr3.1:74154646-74154665 None:intergenic 40.0%
!! ACTGCTGATTCTTATGGTAC+TGG - chr3.1:74153893-74153912 MS.gene06858:CDS 40.0%
!! ATATTTTGGATCATCCTGCG+AGG + chr3.1:74157116-74157135 None:intergenic 40.0%
!! ATTGACTTGACTCCAGGAAT+TGG + chr3.1:74157005-74157024 None:intergenic 40.0%
!! TGTGTTATTGACTTGACTCC+AGG + chr3.1:74157011-74157030 None:intergenic 40.0%
!! TGTTTTCTCATTAGCCTGCT+TGG + chr3.1:74154407-74154426 None:intergenic 40.0%
!!! CATCTTGAGCTTCTGGTTTT+GGG + chr3.1:74153732-74153751 None:intergenic 40.0%
!!! TCCAATGGGTTTTGGAACTT+GGG - chr3.1:74153769-74153788 MS.gene06858:intron 40.0%
!!! TCTTGCTGCAGTTTTGTTGT+TGG - chr3.1:74153638-74153657 MS.gene06858:CDS 40.0%
AAACGAGCTACTTCAGTTGG+AGG - chr3.1:74157073-74157092 MS.gene06858:CDS 45.0%
AAGACGCAAAACCATGTCAC+AGG - chr3.1:74155810-74155829 MS.gene06858:intron 45.0%
ACAAGGACAGTTATGTGGGT+TGG + chr3.1:74156848-74156867 None:intergenic 45.0%
AGAGGAAAATTTGGGTGCTC+TGG - chr3.1:74157034-74157053 MS.gene06858:CDS 45.0%
AGATTGGATCAGAAGACCGA+AGG + chr3.1:74156478-74156497 None:intergenic 45.0%
CAACAGCTTGAACTAAACCC+TGG + chr3.1:74154999-74155018 None:intergenic 45.0%
CAACCACTTGTGCTAGACTT+CGG - chr3.1:74156114-74156133 MS.gene06858:CDS 45.0%
CAACTGAAGTAGCTCGTTTG+AGG + chr3.1:74157072-74157091 None:intergenic 45.0%
CACATAACTGTCCTTGTCCT+AGG - chr3.1:74156851-74156870 MS.gene06858:intron 45.0%
CATGGGGTAATCAGCTTCTT+TGG - chr3.1:74153792-74153811 MS.gene06858:CDS 45.0%
CCAAAACCAGAAGCTCAAGA+TGG - chr3.1:74153730-74153749 MS.gene06858:intron 45.0%
CTAGGACAAGGACAGTTATG+TGG + chr3.1:74156853-74156872 None:intergenic 45.0%
CTAGGACTTGGAATGCTTAC+TGG - chr3.1:74155570-74155589 MS.gene06858:intron 45.0%
CTCAAACGAGCTACTTCAGT+TGG - chr3.1:74157070-74157089 MS.gene06858:CDS 45.0%
CTCAATAAAGGATCCAGTCC+TGG + chr3.1:74155766-74155785 None:intergenic 45.0%
GAGGAAAATTTGGGTGCTCT+GGG - chr3.1:74157035-74157054 MS.gene06858:CDS 45.0%
GCACTTCCTCAGAGAAAAAG+GGG - chr3.1:74154454-74154473 MS.gene06858:intron 45.0%
GCTTACAGTTCCGTCTACTT+TGG - chr3.1:74156365-74156384 MS.gene06858:CDS 45.0%
GGTCAGAGTGAGAAACTTCT+TGG - chr3.1:74153926-74153945 MS.gene06858:CDS 45.0%
GTAAGCATTCCAAGTCCTAG+AGG + chr3.1:74155570-74155589 None:intergenic 45.0%
GTTCTTAAGTCAGTCCAAGC+AGG - chr3.1:74154390-74154409 MS.gene06858:intron 45.0%
GTTGTAACACACCTAGGACA+AGG + chr3.1:74156865-74156884 None:intergenic 45.0%
TAGACGGAACTGTAAGCATG+CGG + chr3.1:74156362-74156381 None:intergenic 45.0%
TCAGCATCCAAACTTCCAAC+TGG - chr3.1:74155600-74155619 MS.gene06858:intron 45.0%
TGGGGTAATCAGCTTCTTTG+GGG - chr3.1:74153794-74153813 MS.gene06858:CDS 45.0%
TTGGGATAGGACAACTGCAT+TGG - chr3.1:74154753-74154772 MS.gene06858:intron 45.0%
! AAAATTTGGGTGCTCTGGGT+TGG - chr3.1:74157039-74157058 MS.gene06858:CDS 45.0%
! CAGGGTTTAGTTCAAGCTGT+TGG - chr3.1:74154997-74155016 MS.gene06858:intron 45.0%
! CTTTCAGGGCATCACTAGAT+AGG - chr3.1:74154714-74154733 MS.gene06858:intron 45.0%
! GGAAGTATACCAGAAGACCA+AGG + chr3.1:74155426-74155445 None:intergenic 45.0%
! TGGATTGGAAAAGGGAAGGA+AGG - chr3.1:74154112-74154131 MS.gene06858:intron 45.0%
!! AGCTCTTTGGGATGGTTTAG+TGG - chr3.1:74154808-74154827 MS.gene06858:intron 45.0%
!! AGTGTGTCTCCAATGGGTTT+TGG - chr3.1:74153761-74153780 MS.gene06858:intron 45.0%
!! GCTTATAGTCCTCTAGGACT+TGG - chr3.1:74155558-74155577 MS.gene06858:intron 45.0%
!!! CCATCTTGAGCTTCTGGTTT+TGG + chr3.1:74153733-74153752 None:intergenic 45.0%
!!! CTCCAATGGGTTTTGGAACT+TGG - chr3.1:74153768-74153787 MS.gene06858:intron 45.0%
!!! TTCTGGTTTTGGGTGGATGA+TGG + chr3.1:74153722-74153741 None:intergenic 45.0%
AGTTCCGTCTACTTTGGCAC+CGG - chr3.1:74156371-74156390 MS.gene06858:CDS 50.0%
CCAAACTTCCAACTGGACCA+AGG - chr3.1:74155607-74155626 MS.gene06858:intron 50.0%
CCACTACACAGTACACCTTC+AGG + chr3.1:74156005-74156024 None:intergenic 50.0%
CCTCTCAGTGTGTCTCCAAT+GGG - chr3.1:74153755-74153774 MS.gene06858:intron 50.0%
CCTTGGTCCAGTTGGAAGTT+TGG + chr3.1:74155610-74155629 None:intergenic 50.0%
CTACCGAAGTCTAGCACAAG+TGG + chr3.1:74156120-74156139 None:intergenic 50.0%
CTTGTGCTAGACTTCGGTAG+TGG - chr3.1:74156120-74156139 MS.gene06858:CDS 50.0%
GCCCAAGTTCCAAAACCCAT+TGG + chr3.1:74153773-74153792 None:intergenic 50.0%
GCGTAGATGTCAACACACCT+TGG + chr3.1:74155627-74155646 None:intergenic 50.0%
GTTTGTCGATGCTTGCAGGT+AGG - chr3.1:74154542-74154561 MS.gene06858:intron 50.0%
TCAACACACCTTGGTCCAGT+TGG + chr3.1:74155618-74155637 None:intergenic 50.0%
TCTACCTGGGCTGAGCATAA+CGG + chr3.1:74155087-74155106 None:intergenic 50.0%
TGGAGCTCAGAACAAGGACA+CGG + chr3.1:74156517-74156536 None:intergenic 50.0%
TTATCCATGGCGCCTTACAC+CGG - chr3.1:74154515-74154534 MS.gene06858:intron 50.0%
! AGTCTGCAACTTGTGCTGCT+GGG + chr3.1:74157271-74157290 None:intergenic 50.0%
! CCTGAAGGTGTACTGTGTAG+TGG - chr3.1:74156002-74156021 MS.gene06858:intron 50.0%
! CTGAGCATAACGGAACTCCA+CGG + chr3.1:74155077-74155096 None:intergenic 50.0%
! GGCATTTGGAGCTCAGAACA+AGG + chr3.1:74156523-74156542 None:intergenic 50.0%
! TGGATGATGGCCATAGGGAA+GGG + chr3.1:74153709-74153728 None:intergenic 50.0%
! TTGGGTGGATGATGGCCATA+GGG + chr3.1:74153714-74153733 None:intergenic 50.0%
! TTTGGGTGGATGATGGCCAT+AGG + chr3.1:74153715-74153734 None:intergenic 50.0%
!! GGACAGTTATGTGGGTTGGT+TGG + chr3.1:74156844-74156863 None:intergenic 50.0%
!!! CTTGAGCTTCTGGTTTTGGG+TGG + chr3.1:74153729-74153748 None:intergenic 50.0%
!!! GGGTTTTGGAACTTGGGCAT+GGG - chr3.1:74153775-74153794 MS.gene06858:CDS 50.0%
!!! GGTTTTGGAACTTGGGCATG+GGG - chr3.1:74153776-74153795 MS.gene06858:CDS 50.0%
!!! TGGGTTTTGGAACTTGGGCA+TGG - chr3.1:74153774-74153793 MS.gene06858:CDS 50.0%
AGTACACCTTCAGGCCCTTC+AGG + chr3.1:74155996-74156015 None:intergenic 55.0%
AGTTCCGTTATGCTCAGCCC+AGG - chr3.1:74155080-74155099 MS.gene06858:intron 55.0%
CAGTCTGCAACTTGTGCTGC+TGG + chr3.1:74157272-74157291 None:intergenic 55.0%
CCCATTGGAGACACACTGAG+AGG + chr3.1:74153758-74153777 None:intergenic 55.0%
CCTCAGAGAAAAAGGGGAGC+CGG - chr3.1:74154460-74154479 MS.gene06858:intron 55.0%
GCCTCTCAGTGTGTCTCCAA+TGG - chr3.1:74153754-74153773 MS.gene06858:intron 55.0%
GGCAGTTTGTCGATGCTTGC+AGG - chr3.1:74154538-74154557 MS.gene06858:intron 55.0%
TATCCATGGCGCCTTACACC+GGG - chr3.1:74154516-74154535 MS.gene06858:intron 55.0%
! CCTACCGGTGCCAAAGTAGA+CGG + chr3.1:74156378-74156397 None:intergenic 55.0%
! GTCTGCAACTTGTGCTGCTG+GGG + chr3.1:74157270-74157289 None:intergenic 55.0%
! GTGGATGATGGCCATAGGGA+AGG + chr3.1:74153710-74153729 None:intergenic 55.0%
!! CAAGCATCGACAAACTGCCC+CGG + chr3.1:74154537-74154556 None:intergenic 55.0%
ACCTTCAGGCCCTTCAGGCT+TGG + chr3.1:74155991-74156010 None:intergenic 60.0%
AGAAGATGGGCCAAGCCTGC+AGG + chr3.1:74156402-74156421 None:intergenic 60.0%
ATCCATGGCGCCTTACACCG+GGG - chr3.1:74154517-74154536 MS.gene06858:intron 60.0%
CGACAAACTGCCCCGGTGTA+AGG + chr3.1:74154530-74154549 None:intergenic 60.0%
GAAGATGGGCCAAGCCTGCA+GGG + chr3.1:74156401-74156420 None:intergenic 60.0%
GAGGCCCCATCTTGAGCTTC+TGG + chr3.1:74153739-74153758 None:intergenic 60.0%
TCCAAGCCTGAAGGGCCTGA+AGG - chr3.1:74155987-74156006 MS.gene06858:intron 60.0%
TGCAGGCTTGGCCCATCTTC+TGG - chr3.1:74156401-74156420 MS.gene06858:CDS 60.0%
! CCGGCTCCCCTTTTTCTCTG+AGG + chr3.1:74154463-74154482 None:intergenic 60.0%
!! CCGTCTACTTTGGCACCGGT+AGG - chr3.1:74156375-74156394 MS.gene06858:CDS 60.0%
CAGCACAGCAATCGCCTCGC+AGG - chr3.1:74157099-74157118 MS.gene06858:CDS 65.0%
ACCGGTAGGCCCTGCAGGCT+TGG - chr3.1:74156389-74156408 MS.gene06858:CDS 70.0%
GCCAAGCCTGCAGGGCCTAC+CGG + chr3.1:74156393-74156412 None:intergenic 70.0%
! TGCCCCGGTGTAAGGCGCCA+TGG + chr3.1:74154522-74154541 None:intergenic 70.0%
!! TTGGCACCGGTAGGCCCTGC+AGG - chr3.1:74156384-74156403 MS.gene06858:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 74153626 74157292 74153626 ID=MS.gene06858
chr3.1 mRNA 74153626 74157292 74153626 ID=MS.gene06858.t1;Parent=MS.gene06858
chr3.1 exon 74156947 74157292 74156947 ID=MS.gene06858.t1.exon1;Parent=MS.gene06858.t1
chr3.1 CDS 74156947 74157292 74156947 ID=cds.MS.gene06858.t1;Parent=MS.gene06858.t1
chr3.1 exon 74156359 74156452 74156359 ID=MS.gene06858.t1.exon2;Parent=MS.gene06858.t1
chr3.1 CDS 74156359 74156452 74156359 ID=cds.MS.gene06858.t1;Parent=MS.gene06858.t1
chr3.1 exon 74156074 74156197 74156074 ID=MS.gene06858.t1.exon3;Parent=MS.gene06858.t1
chr3.1 CDS 74156074 74156197 74156074 ID=cds.MS.gene06858.t1;Parent=MS.gene06858.t1
chr3.1 exon 74155817 74155918 74155817 ID=MS.gene06858.t1.exon4;Parent=MS.gene06858.t1
chr3.1 CDS 74155817 74155918 74155817 ID=cds.MS.gene06858.t1;Parent=MS.gene06858.t1
chr3.1 exon 74155290 74155441 74155290 ID=MS.gene06858.t1.exon5;Parent=MS.gene06858.t1
chr3.1 CDS 74155290 74155441 74155290 ID=cds.MS.gene06858.t1;Parent=MS.gene06858.t1
chr3.1 exon 74155087 74155180 74155087 ID=MS.gene06858.t1.exon6;Parent=MS.gene06858.t1
chr3.1 CDS 74155087 74155180 74155087 ID=cds.MS.gene06858.t1;Parent=MS.gene06858.t1
chr3.1 exon 74153771 74153952 74153771 ID=MS.gene06858.t1.exon7;Parent=MS.gene06858.t1
chr3.1 CDS 74153771 74153952 74153771 ID=cds.MS.gene06858.t1;Parent=MS.gene06858.t1
chr3.1 exon 74153626 74153659 74153626 ID=MS.gene06858.t1.exon8;Parent=MS.gene06858.t1
chr3.1 CDS 74153626 74153659 74153626 ID=cds.MS.gene06858.t1;Parent=MS.gene06858.t1
Gene Sequence

>MS.gene06858

ATGGCACTCTCATCTTGCTGCAGTTTTGTTGTTGGTTCATCAAATATTAACAACCCCTTACCATCGTTTCCTTTCAAATTCCCTTCCCTATGGCCATCATCCACCCAAAACCAGAAGCTCAAGATGGGGCCTCTCAGTGTGTCTCCAATGGGTTTTGGAACTTGGGCATGGGGTAATCAGCTTCTTTGGGGCTATCAAGAATCTATGGATGATGACCTTCAGCAAGTGTTTAACATGGCTGTTGAGAATGGTGTTAATCTTTTTGATACTGCTGATTCTTATGGTACTGGAAGGTTTAATGGTCAGAGTGAGAAACTTCTTGGGAAGTTCATTCAAGATTTTCGAGGTTGGTTCATCATACTTTTCCTTTAATTTGGTATAATTTAACTGAATTCTGCTAGATGCATGTGCCTTTTTATCAATGTTAAATGTAAATATTAGTGTGATGAAAGAGGAAGAGATGATGATATGGATTATGGATTAGATTGGATTGGAAAAGGGAAGGAAGGCGATATATAGCTCAATTAGGTTATTTATAATGGCTCCTTCATACATGTCTTACTGACTGTTTGGATAAGTAGCTCAATTAAGCACTTAAAACACAATTGTCTATGCATAAGCTATTTCTATAACAAAAGATAAAATAAAGTCAGCTTGTTTTGATATAAGCTATTATGGAGAGCTTATGAAATAAGCTTAAAACAACTCAAGGACATTTCAATCTGTCATGTTATTTTTGTAAGCTCTACCAAACAGTTTCGCAAGTTCTTAAGTCAGTCCAAGCAGGCTAATGAGAAAACATAATAGACATAGTACTAAATTTTGTATGCACTTCCTCAGAGAAAAAGGGGAGCCGGAATGAAATTGTGATTGCAACAAAATTTGCTGCTTATCCATGGCGCCTTACACCGGGGCAGTTTGTCGATGCTTGCAGGTAGGCTTTTGATGTTGATATGTTCCTATTCTGACTGAATGATATTACTCGACTAATATACTCATTCCTATTATCAAGTTCTTCCTACGCGGAATTCCATTACAAATATTTGCTTTACTTGTTTGCTTATGCCATTGAACTTGAATGAAATGAACTTTCAGGGCATCACTAGATAGGATGCAGATTGAGCAAATTGGGATAGGACAACTGCATTGGTCAACTGCAAATTATGCTCCTTTTCAAGAATTAGCTCTTTGGGATGGTTTAGTGGCAATGTATGATAAGGTTACAATAATTCATGTTTAATACTAGGATCACATTAGGCTTTAAGTGAACCATACTTTAAAGACATTTGGGGTGCTAAAGATAATTTTTTACTTGCAATTTTCATATTTCTTCAATGATCAAAGTTTATGTCTTTATTTTATATTGGCATCCAGGGTTTAGTTCAAGCTGTTGGAGTAAGTAATTATGGACCAAAGCAGCTTTTGAAGATACATGATTACTTGAAAAACCGTGGAGTTCCGTTATGCTCAGCCCAGGTAGAGTGTAATGCATAATTGTAATGTTAACATTCAAATTTTGCTTTTGGAGAAATGCCTTTTAATCTCATTAGTGACTAATAACCATGGTTTAGTTGTCAAGTTAGACACAAATTTCCTTAAGAAACTACAACAAAAAAGGAAAATGATAAGGCAGAAGAAATGAATTGATAACAAAACTAGTGACTATAATACAGCATCATGCCTCATTGAGTTTCTGAATGAGAAATGAGTTAAATAAACATGAGTTGCCAGAATGACTAAAAGAAAAGTGATTCCTTCAAATTATGCTGTCATTATGCCACAACCGTTCATTTATTGCCTTGGTCTTCTGGTATACTTCCATTAATCATTTTAACAATTTTAACATTTCAGGTGCAATTTTCTTTGCTAAGCATGGGGGAAGATCAACTAGAGATCAAGAGTATATGTGATTCTCTGGGTATTCGCGTAATTGCTTATAGTCCTCTAGGACTTGGAATGCTTACTGGGAAATACTCAGCATCCAAACTTCCAACTGGACCAAGGTGTGTTGACATCTACGCAAATATTTAGAACATTATTAAGTGGTTAACATTATAGCTTAGCATCATTAACTTTTTTTGGTGTACCTTTGTTATTAATTGCAAATCACAGGGGATTGCTATTTAAGCAAATACTTCCAGGACTGGATCCTTTATTGAGTTCCCTGAGAGATATTGCAAATAAAAGACGCAAAACCATGTCACAGGTAATCTTTTTCCTATTTTTACCTACTACTTTCGTTCTTTTTTATAAGCCCCTTTAGCATTTTGTGTATAAATATCACTCAGTTGCTCAGAGGTAGTACTAAAATTCTCATTGATGTCTTTTGACTGTCAATTCATTTGAGGCAAATAAATATGTTCCAAGCCTGAAGGGCCTGAAGGTGTACTGTGTAGTGGTATATCTTGCATGAGTGGTTTAAGGCATTTTTTTTATCAGTAGGAATCGTACTTGGTATTCTGAAGTTTACAACACACACACTGCGCATCAACCACTTGTGCTAGACTTCGGTAGTGGTTTAAGGCATTTACCATACGTATCTTTCTTTTAATCCATTTTATCTAATGTGGAATTAATCACTCACTTTTGAATTCCAACAATAGTGCTAGTGAATGGGGTCAATGAATAGATAGTGCTATAAATGTTCTCTCCATTTTGTAGATTTTATTTTCCTCACACTTATTTGACAAGAGCGTTTCAACTACCAAAACCTGTAATTTTCACATTAATCAACCGCATGCTTACAGTTCCGTCTACTTTGGCACCGGTAGGCCCTGCAGGCTTGGCCCATCTTCTGGAGAACATAACTTTATCCTATTATGCTGTCATACTCAGGCTATATGCTTCTTCCTTCGGTCTTCTGATCCAATCTTTTGTACACTACTACTCCGTGTCCTTGTTCTGAGCTCCAAATGCCAATATTAAAAACCCGGCACAACAGAAAACTAAAACCAAGCTCTGATGGTCATAGAAAGCTTGTGAATAATAGATTATTCAATTAAAGGATTATATGATATCATACGTCATTGATATTTGATGTCACAAAGTAACTGTTTTATCTTGTCCGTAACAACATCAGAACTATTCCCACTTCATTATCAGGATCATCCACCAAAGAAGACAAACCTTAAATGTCAATTCATTCACTTTTTAATGTCGTGCTTGCGAACACAACTTACTTTTTTAAAGGTTTTAAACTTCCCTTTAAAGAAAGACCAACCAACCCACATAACTGTCCTTGTCCTAGGTGTGTTACAACTGACAATGTCAGTCACTTACTCTGACCAACCTTGCCCGATCAAATAAATTCATTGTCTAACGCATCACATTGTTATGTCAGGTTGCAATAAATTGGTGCATATGCAAAGGTACAATTCCAATTCCTGGAGTCAAGTCAATAACACAAGCAGAGGAAAATTTGGGTGCTCTGGGTTGGCGTCTCTCCTCAAACGAGCTACTTCAGTTGGAGGATGCAGCACAGCAATCGCCTCGCAGGATGATCCAAAATATTTTTCAAACCAGGTATACATGTTATCCAGTTTATCAATTATAGGCCAGATATTTCAAGGTTAATAAAATTTGTAATTATTAGTGTTTCATGCAACTTCTCTTTCATATGCTAGATGATATCAGCAACAAAGCCCCAGCAGCACAAGTTGCAGACTGA

Protein sequence

>MS.gene06858.t1

MALSSCCSFVVGSSNINNPLPSFPFKFPSLWPSSTQNQKLKMGPLSVSPMGFGTWAWGNQLLWGYQESMDDDLQQVFNMAVENGVNLFDTADSYGTGRFNGQSEKLLGKFIQDFREKKGSRNEIVIATKFAAYPWRLTPGQFVDACRASLDRMQIEQIGIGQLHWSTANYAPFQELALWDGLVAMYDKGLVQAVGVSNYGPKQLLKIHDYLKNRGVPLCSAQVQFSLLSMGEDQLEIKSICDSLGIRVIAYSPLGLGMLTGKYSASKLPTGPRGLLFKQILPGLDPLLSSLRDIANKRRKTMSQVAINWCICKGTIPIPGVKSITQAEENLGALGWRLSSNELLQLEDAAQQSPRRMIQNIFQTSNKAPAAQVAD