Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06322.t1 | XP_013461634.1 | 96.8 | 343 | 10 | 1 | 1 | 343 | 114 | 455 | 1.70E-189 | 671.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06322.t1 | Q9FGN8 | 41.3 | 196 | 98 | 2 | 1 | 179 | 301 | 496 | 1.9e-32 | 141.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06322.t1 | A0A072V0W9 | 96.8 | 343 | 10 | 1 | 1 | 343 | 114 | 455 | 1.2e-189 | 671.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene06322 | 0.851167 | 1.06E-60 | -1.69E-46 |
| MS.gene049178 | MS.gene06322 | 0.831194 | 1.92E-55 | -1.69E-46 |
| MS.gene049208 | MS.gene06322 | 0.894382 | 2.60E-75 | -1.69E-46 |
| MS.gene049264 | MS.gene06322 | 0.810532 | 1.10E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene06322 | 0.822221 | 2.66E-53 | -1.69E-46 |
| MS.gene049368 | MS.gene06322 | 0.834457 | 2.96E-56 | -1.69E-46 |
| MS.gene050253 | MS.gene06322 | 0.808815 | 2.57E-50 | -1.69E-46 |
| MS.gene050439 | MS.gene06322 | 0.825264 | 5.15E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene06322 | 0.812142 | 4.92E-51 | -1.69E-46 |
| MS.gene051676 | MS.gene06322 | 0.840663 | 7.59E-58 | -1.69E-46 |
| MS.gene051700 | MS.gene06322 | 0.812627 | 3.86E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene06322 | 0.802619 | 5.15E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene06322 | 0.880411 | 5.61E-70 | -1.69E-46 |
| MS.gene052307 | MS.gene06322 | 0.812896 | 3.37E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene06322 | 0.804002 | 2.66E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene06322 | 0.807583 | 4.71E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene06322 | 0.826559 | 2.54E-54 | -1.69E-46 |
| MS.gene052932 | MS.gene06322 | 0.815315 | 9.85E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene06322 | 0.823384 | 1.43E-53 | -1.69E-46 |
| MS.gene054139 | MS.gene06322 | 0.808824 | 2.56E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene06322 | 0.802591 | 5.22E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene06322 | 0.814493 | 1.50E-51 | -1.69E-46 |
| MS.gene05469 | MS.gene06322 | 0.821297 | 4.35E-53 | -1.69E-46 |
| MS.gene055310 | MS.gene06322 | 0.809842 | 1.55E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene06322 | 0.934656 | 2.88E-96 | -1.69E-46 |
| MS.gene055313 | MS.gene06322 | 0.983129 | 6.61E-157 | -1.69E-46 |
| MS.gene055314 | MS.gene06322 | 0.95073 | 8.99E-109 | -1.69E-46 |
| MS.gene055513 | MS.gene06322 | 0.849367 | 3.38E-60 | -1.69E-46 |
| MS.gene055603 | MS.gene06322 | 0.809202 | 2.13E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene06322 | 0.804133 | 2.50E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene06322 | 0.851053 | 1.14E-60 | -1.69E-46 |
| MS.gene056181 | MS.gene06322 | 0.832504 | 9.11E-56 | -1.69E-46 |
| MS.gene056308 | MS.gene06322 | 0.810849 | 9.39E-51 | -1.69E-46 |
| MS.gene056390 | MS.gene06322 | 0.818063 | 2.38E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene06322 | 0.808376 | 3.19E-50 | -1.69E-46 |
| MS.gene056509 | MS.gene06322 | 0.815894 | 7.32E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene06322 | 0.802284 | 6.04E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene06322 | 0.844823 | 5.95E-59 | -1.69E-46 |
| MS.gene057034 | MS.gene06322 | 0.801674 | 8.05E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene06322 | 0.809389 | 1.94E-50 | -1.69E-46 |
| MS.gene057360 | MS.gene06322 | 0.838856 | 2.24E-57 | -1.69E-46 |
| MS.gene057915 | MS.gene06322 | 0.837629 | 4.64E-57 | -1.69E-46 |
| MS.gene058639 | MS.gene06322 | 0.81275 | 3.62E-51 | -1.69E-46 |
| MS.gene059144 | MS.gene06322 | 0.813919 | 2.01E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene06322 | 0.816996 | 4.15E-52 | -1.69E-46 |
| MS.gene059439 | MS.gene06322 | 0.809465 | 1.87E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene06322 | 0.826937 | 2.06E-54 | -1.69E-46 |
| MS.gene059965 | MS.gene06322 | 0.81372 | 2.22E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene06322 | 0.8089 | 2.47E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene06322 | 0.800956 | 1.13E-48 | -1.69E-46 |
| MS.gene060777 | MS.gene06322 | 0.817484 | 3.22E-52 | -1.69E-46 |
| MS.gene060869 | MS.gene06322 | 0.809775 | 1.60E-50 | -1.69E-46 |
| MS.gene060870 | MS.gene06322 | 0.81357 | 2.39E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene06322 | 0.802632 | 5.12E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene06322 | 0.805166 | 1.52E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 107 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTGCAGGAGATGTTTA+TGG | 0.210272 | 3.2:+81313270 | MS.gene06322:intron |
| CAACTCGTTGATAATGTTTC+AGG | 0.243745 | 3.2:+81313168 | MS.gene06322:CDS |
| AAGTTCAGTACTTCTTCATT+TGG | 0.283704 | 3.2:-81312212 | None:intergenic |
| CTTAGTACAGGTCGGGTTAT+TGG | 0.284312 | 3.2:-81311904 | None:intergenic |
| CGTAAATACATCGGTGATAC+TGG | 0.287030 | 3.2:+81311937 | MS.gene06322:CDS |
| TCCCTCCAGGTGCCACTTTA+CGG | 0.303889 | 3.2:-81311990 | None:intergenic |
| GTTCAACCCTGACGGAATTA+TGG | 0.307173 | 3.2:+81312032 | MS.gene06322:CDS |
| CAGTATCACCGATGTATTTA+CGG | 0.324775 | 3.2:-81311936 | None:intergenic |
| GATGACGTCCGCGAGGAGGC+TGG | 0.343634 | 3.2:+81312081 | MS.gene06322:CDS |
| TGAAGTGGAGCAACATCTTA+TGG | 0.347796 | 3.2:+81312679 | MS.gene06322:CDS |
| GTATATTAACAGGGCAAGTA+TGG | 0.358640 | 3.2:+81312635 | MS.gene06322:intron |
| GGATACCACCATCCACTGTT+AGG | 0.358688 | 3.2:+81312121 | MS.gene06322:CDS |
| TTAACAGTTGTAGAAGAATC+TGG | 0.359007 | 3.2:-81313127 | None:intergenic |
| TCTTCATTGAGTGGCTGAAT+TGG | 0.364573 | 3.2:-81312902 | None:intergenic |
| CCGTCATCCTGAGTATTGTC+TGG | 0.369164 | 3.2:-81312800 | None:intergenic |
| GGTTGATCCTCTTGCATTGT+GGG | 0.373824 | 3.2:-81313094 | None:intergenic |
| GTGGATGGTGGTATCCAATA+GGG | 0.379280 | 3.2:-81312114 | None:intergenic |
| TTAGTACAGGTCGGGTTATT+GGG | 0.379451 | 3.2:-81311903 | None:intergenic |
| CTGGGGTTGATGACCCCTAT+TGG | 0.380387 | 3.2:+81312100 | MS.gene06322:CDS |
| AGTTCAGTACTTCTTCATTT+GGG | 0.387011 | 3.2:-81312211 | None:intergenic |
| GGCCATCCGTGCCCCTTGTC+AGG | 0.402712 | 3.2:+81312143 | MS.gene06322:CDS |
| GGATTCTTTGAAGAATTTGC+AGG | 0.406927 | 3.2:+81312513 | MS.gene06322:CDS |
| GAAGAATCTGGGGTGACATT+AGG | 0.411888 | 3.2:-81313115 | None:intergenic |
| GATGTATCAAACACTGTATA+TGG | 0.414656 | 3.2:+81313334 | MS.gene06322:CDS |
| ATTCAAATGGAAAGAAAAGA+TGG | 0.422345 | 3.2:+81313297 | MS.gene06322:CDS |
| CGTCAGGGTTGAACCATCTT+CGG | 0.426408 | 3.2:-81312023 | None:intergenic |
| AGTGGATGGTGGTATCCAAT+AGG | 0.428009 | 3.2:-81312115 | None:intergenic |
| AGTATGGTGAGTTCGCGATA+TGG | 0.430148 | 3.2:+81312651 | MS.gene06322:CDS |
| GAAACTGCTTAAAATAGAAA+TGG | 0.441793 | 3.2:+81312188 | MS.gene06322:CDS |
| AGGATGACGGATTGGCAACT+TGG | 0.448641 | 3.2:+81312813 | MS.gene06322:CDS |
| TGTTTATGGATTTATTCAAA+TGG | 0.448971 | 3.2:+81313284 | MS.gene06322:CDS |
| CGGAATTATGGAGTATTGGT+TGG | 0.461416 | 3.2:+81312044 | MS.gene06322:CDS |
| TTTGGATAGCAGAGATATGC+AGG | 0.462744 | 3.2:+81312296 | MS.gene06322:intron |
| CTGACGGAATTATGGAGTAT+TGG | 0.463406 | 3.2:+81312040 | MS.gene06322:CDS |
| GTGGGAGGTGCTGAAGGCAG+AGG | 0.464284 | 3.2:+81311864 | MS.gene06322:CDS |
| ATGACGTCCGCGAGGAGGCT+GGG | 0.464713 | 3.2:+81312082 | MS.gene06322:CDS |
| CAATACTCCATAATTCCGTC+AGG | 0.466213 | 3.2:-81312039 | None:intergenic |
| CTAAAAGTGGTGCACTCTCT+TGG | 0.466483 | 3.2:-81312734 | None:intergenic |
| CAACCGCCTAACTGAAATCA+TGG | 0.467995 | 3.2:+81312492 | MS.gene06322:CDS |
| AGTATCACCGATGTATTTAC+GGG | 0.476913 | 3.2:-81311935 | None:intergenic |
| AAGAATCCATGATTTCAGTT+AGG | 0.487830 | 3.2:-81312498 | None:intergenic |
| TGGGAGGTGCTGAAGGCAGA+GGG | 0.492323 | 3.2:+81311865 | MS.gene06322:CDS |
| TAACAGTTGTAGAAGAATCT+GGG | 0.496287 | 3.2:-81313126 | None:intergenic |
| AGCTGATCTTAGTACAGGTC+GGG | 0.496477 | 3.2:-81311911 | None:intergenic |
| GGACTGATCGGTTCCGAAGA+TGG | 0.500965 | 3.2:+81312010 | MS.gene06322:CDS |
| TGACGTCCGCGAGGAGGCTG+GGG | 0.505696 | 3.2:+81312083 | MS.gene06322:CDS |
| AGGTTGATCCTCTTGCATTG+TGG | 0.510835 | 3.2:-81313095 | None:intergenic |
| TTGGTTGGAGAGGGCTGACT+TGG | 0.513352 | 3.2:+81312059 | MS.gene06322:CDS |
| ATCCTGACAAGGGGCACGGA+TGG | 0.514234 | 3.2:-81312145 | None:intergenic |
| TTAGTCAGTTCTTCATTGAG+TGG | 0.514458 | 3.2:-81312911 | None:intergenic |
| GAAGAATCAGCATCCTGACA+AGG | 0.520021 | 3.2:-81312156 | None:intergenic |
| GACGGATTGGCAACTTGGAT+AGG | 0.527728 | 3.2:+81312818 | MS.gene06322:CDS |
| CTGAATTGGCATGCCTGAGT+AGG | 0.528503 | 3.2:-81312888 | None:intergenic |
| TTCTACAACTGTTAATTCAA+AGG | 0.528922 | 3.2:+81313135 | MS.gene06322:CDS |
| GGTCAATGTGCTTCAGTAAG+TGG | 0.534563 | 3.2:-81311969 | None:intergenic |
| CGGGCAGCTGATCTTAGTAC+AGG | 0.536563 | 3.2:-81311916 | None:intergenic |
| TTGAAATAATAGTCATGTTG+AGG | 0.537928 | 3.2:+81313063 | MS.gene06322:intron |
| CAGCTGATCTTAGTACAGGT+CGG | 0.541011 | 3.2:-81311912 | None:intergenic |
| ACGGATTGGCAACTTGGATA+GGG | 0.541184 | 3.2:+81312819 | MS.gene06322:CDS |
| AAGCATGTGGGAGGTGCTGA+AGG | 0.543073 | 3.2:+81311858 | MS.gene06322:CDS |
| TTTCTTGAAGATCCCTACTC+AGG | 0.547860 | 3.2:+81312875 | MS.gene06322:CDS |
| AAAGATGGAGCAGCAGCTGT+TGG | 0.548685 | 3.2:+81313312 | MS.gene06322:CDS |
| TTCTGAAGGAGGACTAAAAG+TGG | 0.548840 | 3.2:-81312747 | None:intergenic |
| GATACCACCATCCACTGTTA+GGG | 0.550025 | 3.2:+81312122 | MS.gene06322:CDS |
| GAAAACTGAAAGTAACATGA+TGG | 0.552332 | 3.2:+81312341 | MS.gene06322:CDS |
| GGAGGTGCTGAAGGCAGAGG+GGG | 0.552568 | 3.2:+81311867 | MS.gene06322:CDS |
| TATGGAGTATTGGTTGGAGA+GGG | 0.553818 | 3.2:+81312050 | MS.gene06322:CDS |
| CGGAACCGATCAGTCCCTCC+AGG | 0.556285 | 3.2:-81312003 | None:intergenic |
| GCAGGAGCTCATTGCCCAGA+AGG | 0.562853 | 3.2:+81312314 | MS.gene06322:CDS |
| AAGAACTGACTAACAAGAAG+AGG | 0.565105 | 3.2:+81312921 | MS.gene06322:CDS |
| GAAGCACATTGACCGTAAAG+TGG | 0.570384 | 3.2:+81311978 | MS.gene06322:CDS |
| TGAATTGGCATGCCTGAGTA+GGG | 0.572022 | 3.2:-81312887 | None:intergenic |
| CGCGATATGGAAAACTGAAG+TGG | 0.573314 | 3.2:+81312664 | MS.gene06322:CDS |
| AATCCATGATTTCAGTTAGG+CGG | 0.575656 | 3.2:-81312495 | None:intergenic |
| TGGCACCTGGAGGGACTGAT+CGG | 0.577271 | 3.2:+81311998 | MS.gene06322:CDS |
| CGTCATCCTGAGTATTGTCT+GGG | 0.578265 | 3.2:-81312799 | None:intergenic |
| CGAAGATGGTTCAACCCTGA+CGG | 0.579824 | 3.2:+81312024 | MS.gene06322:CDS |
| CTTGGATGACGTCCGCGAGG+AGG | 0.584682 | 3.2:+81312077 | MS.gene06322:CDS |
| CAGCATCCTGACAAGGGGCA+CGG | 0.588448 | 3.2:-81312149 | None:intergenic |
| CAATACTCAGGATGACGGAT+TGG | 0.588917 | 3.2:+81312805 | MS.gene06322:CDS |
| CGGATGGCCCTAACAGTGGA+TGG | 0.589422 | 3.2:-81312129 | None:intergenic |
| CTTGCAAGGAACTTATGAAG+TGG | 0.591648 | 3.2:+81312455 | MS.gene06322:CDS |
| TCTTCAAGAAAACACTCTTG+TGG | 0.592785 | 3.2:-81312863 | None:intergenic |
| TTATGGAGTATTGGTTGGAG+AGG | 0.594798 | 3.2:+81312049 | MS.gene06322:CDS |
| ACCGTAAAGTGGCACCTGGA+GGG | 0.600671 | 3.2:+81311989 | MS.gene06322:CDS |
| CACTAACCCAGACAATACTC+AGG | 0.613204 | 3.2:+81312793 | MS.gene06322:CDS |
| AAGAATCAGCATCCTGACAA+GGG | 0.613306 | 3.2:-81312155 | None:intergenic |
| GGCACGGATGGCCCTAACAG+TGG | 0.626312 | 3.2:-81312133 | None:intergenic |
| ATTGACCGTAAAGTGGCACC+TGG | 0.626391 | 3.2:+81311985 | MS.gene06322:CDS |
| GCTGATACCCACAATGCAAG+AGG | 0.632260 | 3.2:+81313087 | MS.gene06322:CDS |
| ACTCTAATGTAGGTACAAGT+CGG | 0.634040 | 3.2:+81311828 | None:intergenic |
| CCAGACAATACTCAGGATGA+CGG | 0.639358 | 3.2:+81312800 | MS.gene06322:CDS |
| AACAGTTGTAGAAGAATCTG+GGG | 0.639407 | 3.2:-81313125 | None:intergenic |
| TGGATGGTGGTATCCAATAG+GGG | 0.643639 | 3.2:-81312113 | None:intergenic |
| AGTCGGCTGAACAAAGCATG+TGG | 0.643899 | 3.2:+81311845 | MS.gene06322:CDS |
| GTCGGCTGAACAAAGCATGT+GGG | 0.649689 | 3.2:+81311846 | MS.gene06322:CDS |
| GGCTGAACAAAGCATGTGGG+AGG | 0.654214 | 3.2:+81311849 | MS.gene06322:CDS |
| AACTGAAAGTAACATGATGG+AGG | 0.656525 | 3.2:+81312344 | MS.gene06322:CDS |
| TCAGCTGCCCGTAAATACAT+CGG | 0.660244 | 3.2:+81311928 | MS.gene06322:CDS |
| CATCAACCCCAGCCTCCTCG+CGG | 0.661718 | 3.2:-81312089 | None:intergenic |
| AGAATCAGCATCCTGACAAG+GGG | 0.662008 | 3.2:-81312154 | None:intergenic |
| GGGAGGTGCTGAAGGCAGAG+GGG | 0.662463 | 3.2:+81311866 | MS.gene06322:CDS |
| GACCGTAAAGTGGCACCTGG+AGG | 0.665408 | 3.2:+81311988 | MS.gene06322:CDS |
| AATACTCCATAATTCCGTCA+GGG | 0.681790 | 3.2:-81312038 | None:intergenic |
| TCAATGGCAGAAGACTTGCA+AGG | 0.688837 | 3.2:+81312441 | MS.gene06322:intron |
| ATGGCCCTAACAGTGGATGG+TGG | 0.700088 | 3.2:-81312126 | None:intergenic |
| TGACTTGGATGACGTCCGCG+AGG | 0.712793 | 3.2:+81312074 | MS.gene06322:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCCTAATAATTTTATT+TGG | + | chr3.2:81312278-81312297 | MS.gene06322:intron | 10.0% |
| !! | GTATATATTCAAGATTTAAT+GGG | + | chr3.2:81312535-81312554 | MS.gene06322:intron | 15.0% |
| !!! | TGAATGCTTTAATATTTTAA+TGG | + | chr3.2:81312374-81312393 | MS.gene06322:intron | 15.0% |
| !! | AATAGATCATGAATATAAGA+AGG | - | chr3.2:81313247-81313266 | None:intergenic | 20.0% |
| !! | GCTATCCAAATAAAATTATT+AGG | - | chr3.2:81312286-81312305 | None:intergenic | 20.0% |
| !! | GGTATATATTCAAGATTTAA+TGG | + | chr3.2:81312534-81312553 | MS.gene06322:intron | 20.0% |
| !! | TGTTTATGGATTTATTCAAA+TGG | + | chr3.2:81313284-81313303 | MS.gene06322:CDS | 20.0% |
| !!! | AAATTAACTTTTTTCCTTCT+TGG | - | chr3.2:81313019-81313038 | None:intergenic | 20.0% |
| ! | ATTCAAATGGAAAGAAAAGA+TGG | + | chr3.2:81313297-81313316 | MS.gene06322:CDS | 25.0% |
| ! | CAACATGACTATTATTTCAA+AGG | - | chr3.2:81313063-81313082 | None:intergenic | 25.0% |
| ! | GAAACTGCTTAAAATAGAAA+TGG | + | chr3.2:81312188-81312207 | MS.gene06322:CDS | 25.0% |
| ! | TGCTTTATGTTGAATTTCAA+TGG | + | chr3.2:81312425-81312444 | MS.gene06322:intron | 25.0% |
| ! | TTCTACAACTGTTAATTCAA+AGG | + | chr3.2:81313135-81313154 | MS.gene06322:CDS | 25.0% |
| ! | TTGAAATAATAGTCATGTTG+AGG | + | chr3.2:81313063-81313082 | MS.gene06322:intron | 25.0% |
| !!! | TGATCTATTATTTTTCTTGC+AGG | + | chr3.2:81313258-81313277 | MS.gene06322:intron | 25.0% |
| AAGAATCCATGATTTCAGTT+AGG | - | chr3.2:81312501-81312520 | None:intergenic | 30.0% | |
| AAGGAAAAAATGGGAATAAG+TGG | - | chr3.2:81313218-81313237 | None:intergenic | 30.0% | |
| AAGTTCAGTACTTCTTCATT+TGG | - | chr3.2:81312215-81312234 | None:intergenic | 30.0% | |
| AGATCATGAATATAAGAAGG+TGG | - | chr3.2:81313244-81313263 | None:intergenic | 30.0% | |
| AGTTCAGTACTTCTTCATTT+GGG | - | chr3.2:81312214-81312233 | None:intergenic | 30.0% | |
| CCTGTTAATATACAGAACTA+CGG | - | chr3.2:81312628-81312647 | None:intergenic | 30.0% | |
| CTTCAGAAAAATGGAAAGAT+TGG | + | chr3.2:81312762-81312781 | MS.gene06322:CDS | 30.0% | |
| GAAAACTGAAAGTAACATGA+TGG | + | chr3.2:81312341-81312360 | MS.gene06322:CDS | 30.0% | |
| GATGTATCAAACACTGTATA+TGG | + | chr3.2:81313334-81313353 | MS.gene06322:CDS | 30.0% | |
| GGAGAAATCAAACAAACAAA+AGG | - | chr3.2:81312584-81312603 | None:intergenic | 30.0% | |
| TAACAGTTGTAGAAGAATCT+GGG | - | chr3.2:81313129-81313148 | None:intergenic | 30.0% | |
| TAAGTCAGATATCACATAAG+TGG | - | chr3.2:81312605-81312624 | None:intergenic | 30.0% | |
| TTAACAGTTGTAGAAGAATC+TGG | - | chr3.2:81313130-81313149 | None:intergenic | 30.0% | |
| ! | CGTAGTTCTGTATATTAACA+GGG | + | chr3.2:81312626-81312645 | MS.gene06322:intron | 30.0% |
| ! | TTCAGTTTTCTTTTCCTTCT+GGG | - | chr3.2:81312331-81312350 | None:intergenic | 30.0% |
| ! | TTTCAGTTTTCTTTTCCTTC+TGG | - | chr3.2:81312332-81312351 | None:intergenic | 30.0% |
| !! | CAATCTTTCCATTTTTCTGA+AGG | - | chr3.2:81312764-81312783 | None:intergenic | 30.0% |
| AACAGTTGTAGAAGAATCTG+GGG | - | chr3.2:81313128-81313147 | None:intergenic | 35.0% | |
| AACTGAAAGTAACATGATGG+AGG | + | chr3.2:81312344-81312363 | MS.gene06322:CDS | 35.0% | |
| AAGAACTGACTAACAAGAAG+AGG | + | chr3.2:81312921-81312940 | MS.gene06322:CDS | 35.0% | |
| AAGGTGGTAGAAGGAAAAAA+TGG | - | chr3.2:81313228-81313247 | None:intergenic | 35.0% | |
| AATACTCCATAATTCCGTCA+GGG | - | chr3.2:81312041-81312060 | None:intergenic | 35.0% | |
| AATCCATGATTTCAGTTAGG+CGG | - | chr3.2:81312498-81312517 | None:intergenic | 35.0% | |
| AGGTGGTAGAAGGAAAAAAT+GGG | - | chr3.2:81313227-81313246 | None:intergenic | 35.0% | |
| AGTATCACCGATGTATTTAC+GGG | - | chr3.2:81311938-81311957 | None:intergenic | 35.0% | |
| CAGTATCACCGATGTATTTA+CGG | - | chr3.2:81311939-81311958 | None:intergenic | 35.0% | |
| GAATATAAGAAGGTGGTAGA+AGG | - | chr3.2:81313237-81313256 | None:intergenic | 35.0% | |
| GTATATTAACAGGGCAAGTA+TGG | + | chr3.2:81312635-81312654 | MS.gene06322:intron | 35.0% | |
| TCTTCAAGAAAACACTCTTG+TGG | - | chr3.2:81312866-81312885 | None:intergenic | 35.0% | |
| TTAGTCAGTTCTTCATTGAG+TGG | - | chr3.2:81312914-81312933 | None:intergenic | 35.0% | |
| TTAGTCCTCCTTCAGAAAAA+TGG | + | chr3.2:81312753-81312772 | MS.gene06322:CDS | 35.0% | |
| TTTCTTGCAGGAGATGTTTA+TGG | + | chr3.2:81313270-81313289 | MS.gene06322:intron | 35.0% | |
| ! | CCGTAGTTCTGTATATTAAC+AGG | + | chr3.2:81312625-81312644 | MS.gene06322:intron | 35.0% |
| ! | GGATTCTTTGAAGAATTTGC+AGG | + | chr3.2:81312513-81312532 | MS.gene06322:CDS | 35.0% |
| !! | CAACTCGTTGATAATGTTTC+AGG | + | chr3.2:81313168-81313187 | MS.gene06322:CDS | 35.0% |
| !! | TCTTTCCATTTTTCTGAAGG+AGG | - | chr3.2:81312761-81312780 | None:intergenic | 35.0% |
| AAGAATCAGCATCCTGACAA+GGG | - | chr3.2:81312158-81312177 | None:intergenic | 40.0% | |
| CAATACTCCATAATTCCGTC+AGG | - | chr3.2:81312042-81312061 | None:intergenic | 40.0% | |
| CGTAAATACATCGGTGATAC+TGG | + | chr3.2:81311937-81311956 | MS.gene06322:CDS | 40.0% | |
| CTGACGGAATTATGGAGTAT+TGG | + | chr3.2:81312040-81312059 | MS.gene06322:CDS | 40.0% | |
| CTTGCAAGGAACTTATGAAG+TGG | + | chr3.2:81312455-81312474 | MS.gene06322:CDS | 40.0% | |
| TCTTCATTGAGTGGCTGAAT+TGG | - | chr3.2:81312905-81312924 | None:intergenic | 40.0% | |
| TGAAGTGGAGCAACATCTTA+TGG | + | chr3.2:81312679-81312698 | MS.gene06322:CDS | 40.0% | |
| TTAGTACAGGTCGGGTTATT+GGG | - | chr3.2:81311906-81311925 | None:intergenic | 40.0% | |
| TTTCTTGAAGATCCCTACTC+AGG | + | chr3.2:81312875-81312894 | MS.gene06322:CDS | 40.0% | |
| TTTGGATAGCAGAGATATGC+AGG | + | chr3.2:81312296-81312315 | MS.gene06322:intron | 40.0% | |
| ! | TTCTGAAGGAGGACTAAAAG+TGG | - | chr3.2:81312750-81312769 | None:intergenic | 40.0% |
| !! | CGGAATTATGGAGTATTGGT+TGG | + | chr3.2:81312044-81312063 | MS.gene06322:CDS | 40.0% |
| !! | TATGGAGTATTGGTTGGAGA+GGG | + | chr3.2:81312050-81312069 | MS.gene06322:CDS | 40.0% |
| !! | TTATGGAGTATTGGTTGGAG+AGG | + | chr3.2:81312049-81312068 | MS.gene06322:CDS | 40.0% |
| AGAATCAGCATCCTGACAAG+GGG | - | chr3.2:81312157-81312176 | None:intergenic | 45.0% | |
| AGATGTGCGTGCATGTTTGA+GGG | - | chr3.2:81312979-81312998 | None:intergenic | 45.0% | |
| AGCTGATCTTAGTACAGGTC+GGG | - | chr3.2:81311914-81311933 | None:intergenic | 45.0% | |
| AGTATGGTGAGTTCGCGATA+TGG | + | chr3.2:81312651-81312670 | MS.gene06322:CDS | 45.0% | |
| CAACCGCCTAACTGAAATCA+TGG | + | chr3.2:81312492-81312511 | MS.gene06322:CDS | 45.0% | |
| CACTAACCCAGACAATACTC+AGG | + | chr3.2:81312793-81312812 | MS.gene06322:CDS | 45.0% | |
| CAGCTGATCTTAGTACAGGT+CGG | - | chr3.2:81311915-81311934 | None:intergenic | 45.0% | |
| CCAGACAATACTCAGGATGA+CGG | + | chr3.2:81312800-81312819 | MS.gene06322:CDS | 45.0% | |
| CGCGATATGGAAAACTGAAG+TGG | + | chr3.2:81312664-81312683 | MS.gene06322:CDS | 45.0% | |
| CTAAAAGTGGTGCACTCTCT+TGG | - | chr3.2:81312737-81312756 | None:intergenic | 45.0% | |
| CTTAGTACAGGTCGGGTTAT+TGG | - | chr3.2:81311907-81311926 | None:intergenic | 45.0% | |
| GAAGAATCAGCATCCTGACA+AGG | - | chr3.2:81312159-81312178 | None:intergenic | 45.0% | |
| GAAGCACATTGACCGTAAAG+TGG | + | chr3.2:81311978-81311997 | MS.gene06322:CDS | 45.0% | |
| GATACCACCATCCACTGTTA+GGG | + | chr3.2:81312122-81312141 | MS.gene06322:CDS | 45.0% | |
| GGTCAATGTGCTTCAGTAAG+TGG | - | chr3.2:81311972-81311991 | None:intergenic | 45.0% | |
| GGTTGATCCTCTTGCATTGT+GGG | - | chr3.2:81313097-81313116 | None:intergenic | 45.0% | |
| GTTCAACCCTGACGGAATTA+TGG | + | chr3.2:81312032-81312051 | MS.gene06322:CDS | 45.0% | |
| TCAATGGCAGAAGACTTGCA+AGG | + | chr3.2:81312441-81312460 | MS.gene06322:intron | 45.0% | |
| TCAGCTGCCCGTAAATACAT+CGG | + | chr3.2:81311928-81311947 | MS.gene06322:CDS | 45.0% | |
| TGAATTGGCATGCCTGAGTA+GGG | - | chr3.2:81312890-81312909 | None:intergenic | 45.0% | |
| TGGAGGTGGAAAAACCAAGA+AGG | + | chr3.2:81313002-81313021 | MS.gene06322:intron | 45.0% | |
| TGGCATGCTAGCAATGAAGT+AGG | + | chr3.2:81313354-81313373 | MS.gene06322:CDS | 45.0% | |
| ! | AGGTTGATCCTCTTGCATTG+TGG | - | chr3.2:81313098-81313117 | None:intergenic | 45.0% |
| ! | AGTGGATGGTGGTATCCAAT+AGG | - | chr3.2:81312118-81312137 | None:intergenic | 45.0% |
| ! | CGTCATCCTGAGTATTGTCT+GGG | - | chr3.2:81312802-81312821 | None:intergenic | 45.0% |
| ! | GAAGAATCTGGGGTGACATT+AGG | - | chr3.2:81313118-81313137 | None:intergenic | 45.0% |
| ! | GTGGATGGTGGTATCCAATA+GGG | - | chr3.2:81312117-81312136 | None:intergenic | 45.0% |
| ! | TGGATGGTGGTATCCAATAG+GGG | - | chr3.2:81312116-81312135 | None:intergenic | 45.0% |
| !! | ACGGATTGGCAACTTGGATA+GGG | + | chr3.2:81312819-81312838 | MS.gene06322:CDS | 45.0% |
| !! | CAATACTCAGGATGACGGAT+TGG | + | chr3.2:81312805-81312824 | MS.gene06322:CDS | 45.0% |
| !! | TCTTGGTTTTTCCACCTCCA+AGG | - | chr3.2:81313002-81313021 | None:intergenic | 45.0% |
| !!! | AATATCAAAATAATATTTTA+TGG | + | chr3.2:81312243-81312262 | MS.gene06322:intron | 5.0% |
| AAAGATGGAGCAGCAGCTGT+TGG | + | chr3.2:81313312-81313331 | MS.gene06322:CDS | 50.0% | |
| AACATGCACGCACATCTCCT+TGG | + | chr3.2:81312982-81313001 | MS.gene06322:intron | 50.0% | |
| AGTCGGCTGAACAAAGCATG+TGG | + | chr3.2:81311845-81311864 | MS.gene06322:CDS | 50.0% | |
| ATTGACCGTAAAGTGGCACC+TGG | + | chr3.2:81311985-81312004 | MS.gene06322:CDS | 50.0% | |
| CGAAGATGGTTCAACCCTGA+CGG | + | chr3.2:81312024-81312043 | MS.gene06322:CDS | 50.0% | |
| CGTCAGGGTTGAACCATCTT+CGG | - | chr3.2:81312026-81312045 | None:intergenic | 50.0% | |
| CTGAATTGGCATGCCTGAGT+AGG | - | chr3.2:81312891-81312910 | None:intergenic | 50.0% | |
| GAGATGTGCGTGCATGTTTG+AGG | - | chr3.2:81312980-81312999 | None:intergenic | 50.0% | |
| GCTGATACCCACAATGCAAG+AGG | + | chr3.2:81313087-81313106 | MS.gene06322:CDS | 50.0% | |
| GGATACCACCATCCACTGTT+AGG | + | chr3.2:81312121-81312140 | MS.gene06322:CDS | 50.0% | |
| GTCGGCTGAACAAAGCATGT+GGG | + | chr3.2:81311846-81311865 | MS.gene06322:CDS | 50.0% | |
| TGCGTGCATGTTTGAGGGTT+TGG | - | chr3.2:81312974-81312993 | None:intergenic | 50.0% | |
| ! | CCGTCATCCTGAGTATTGTC+TGG | - | chr3.2:81312803-81312822 | None:intergenic | 50.0% |
| !! | AGGATGACGGATTGGCAACT+TGG | + | chr3.2:81312813-81312832 | MS.gene06322:CDS | 50.0% |
| !! | GACGGATTGGCAACTTGGAT+AGG | + | chr3.2:81312818-81312837 | MS.gene06322:CDS | 50.0% |
| ACCGTAAAGTGGCACCTGGA+GGG | + | chr3.2:81311989-81312008 | MS.gene06322:CDS | 55.0% | |
| ATGCACGCACATCTCCTTGG+AGG | + | chr3.2:81312985-81313004 | MS.gene06322:intron | 55.0% | |
| ATGGCCCTAACAGTGGATGG+TGG | - | chr3.2:81312129-81312148 | None:intergenic | 55.0% | |
| CGGGCAGCTGATCTTAGTAC+AGG | - | chr3.2:81311919-81311938 | None:intergenic | 55.0% | |
| GGCTGAACAAAGCATGTGGG+AGG | + | chr3.2:81311849-81311868 | MS.gene06322:CDS | 55.0% | |
| TTGGTTGGAGAGGGCTGACT+TGG | + | chr3.2:81312059-81312078 | MS.gene06322:CDS | 55.0% | |
| ! | GGACTGATCGGTTCCGAAGA+TGG | + | chr3.2:81312010-81312029 | MS.gene06322:CDS | 55.0% |
| !! | AAGCATGTGGGAGGTGCTGA+AGG | + | chr3.2:81311858-81311877 | MS.gene06322:CDS | 55.0% |
| !! | CTGGGGTTGATGACCCCTAT+TGG | + | chr3.2:81312100-81312119 | MS.gene06322:CDS | 55.0% |
| !! | TCCCTCCAGGTGCCACTTTA+CGG | - | chr3.2:81311993-81312012 | None:intergenic | 55.0% |
| CACGCACATCTCCTTGGAGG+TGG | + | chr3.2:81312988-81313007 | MS.gene06322:intron | 60.0% | |
| CAGCATCCTGACAAGGGGCA+CGG | - | chr3.2:81312152-81312171 | None:intergenic | 60.0% | |
| CGGATGGCCCTAACAGTGGA+TGG | - | chr3.2:81312132-81312151 | None:intergenic | 60.0% | |
| GACCGTAAAGTGGCACCTGG+AGG | + | chr3.2:81311988-81312007 | MS.gene06322:CDS | 60.0% | |
| GCAGGAGCTCATTGCCCAGA+AGG | + | chr3.2:81312314-81312333 | MS.gene06322:CDS | 60.0% | |
| TGGCACCTGGAGGGACTGAT+CGG | + | chr3.2:81311998-81312017 | MS.gene06322:CDS | 60.0% | |
| ! | ATCCTGACAAGGGGCACGGA+TGG | - | chr3.2:81312148-81312167 | None:intergenic | 60.0% |
| ! | TGACTTGGATGACGTCCGCG+AGG | + | chr3.2:81312074-81312093 | MS.gene06322:CDS | 60.0% |
| !! | TGGGAGGTGCTGAAGGCAGA+GGG | + | chr3.2:81311865-81311884 | MS.gene06322:CDS | 60.0% |
| ATGACGTCCGCGAGGAGGCT+GGG | + | chr3.2:81312082-81312101 | MS.gene06322:CDS | 65.0% | |
| CATCAACCCCAGCCTCCTCG+CGG | - | chr3.2:81312092-81312111 | None:intergenic | 65.0% | |
| CGGAACCGATCAGTCCCTCC+AGG | - | chr3.2:81312006-81312025 | None:intergenic | 65.0% | |
| CTTGGATGACGTCCGCGAGG+AGG | + | chr3.2:81312077-81312096 | MS.gene06322:CDS | 65.0% | |
| GGCACGGATGGCCCTAACAG+TGG | - | chr3.2:81312136-81312155 | None:intergenic | 65.0% | |
| !! | GGAGGTGCTGAAGGCAGAGG+GGG | + | chr3.2:81311867-81311886 | MS.gene06322:CDS | 65.0% |
| !! | GGGAGGTGCTGAAGGCAGAG+GGG | + | chr3.2:81311866-81311885 | MS.gene06322:CDS | 65.0% |
| !! | GTGGGAGGTGCTGAAGGCAG+AGG | + | chr3.2:81311864-81311883 | MS.gene06322:CDS | 65.0% |
| GATGACGTCCGCGAGGAGGC+TGG | + | chr3.2:81312081-81312100 | MS.gene06322:CDS | 70.0% | |
| GGCCATCCGTGCCCCTTGTC+AGG | + | chr3.2:81312143-81312162 | MS.gene06322:CDS | 70.0% | |
| TGACGTCCGCGAGGAGGCTG+GGG | + | chr3.2:81312083-81312102 | MS.gene06322:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 81311840 | 81313375 | 81311840 | ID=MS.gene06322 |
| chr3.2 | mRNA | 81311840 | 81313375 | 81311840 | ID=MS.gene06322.t1;Parent=MS.gene06322 |
| chr3.2 | exon | 81311840 | 81312223 | 81311840 | ID=MS.gene06322.t1.exon1;Parent=MS.gene06322.t1 |
| chr3.2 | CDS | 81311840 | 81312223 | 81311840 | ID=cds.MS.gene06322.t1;Parent=MS.gene06322.t1 |
| chr3.2 | exon | 81312308 | 81312365 | 81312308 | ID=MS.gene06322.t1.exon2;Parent=MS.gene06322.t1 |
| chr3.2 | CDS | 81312308 | 81312365 | 81312308 | ID=cds.MS.gene06322.t1;Parent=MS.gene06322.t1 |
| chr3.2 | exon | 81312451 | 81312534 | 81312451 | ID=MS.gene06322.t1.exon3;Parent=MS.gene06322.t1 |
| chr3.2 | CDS | 81312451 | 81312534 | 81312451 | ID=cds.MS.gene06322.t1;Parent=MS.gene06322.t1 |
| chr3.2 | exon | 81312647 | 81312942 | 81312647 | ID=MS.gene06322.t1.exon4;Parent=MS.gene06322.t1 |
| chr3.2 | CDS | 81312647 | 81312942 | 81312647 | ID=cds.MS.gene06322.t1;Parent=MS.gene06322.t1 |
| chr3.2 | exon | 81313075 | 81313189 | 81313075 | ID=MS.gene06322.t1.exon5;Parent=MS.gene06322.t1 |
| chr3.2 | CDS | 81313075 | 81313189 | 81313075 | ID=cds.MS.gene06322.t1;Parent=MS.gene06322.t1 |
| chr3.2 | exon | 81313280 | 81313375 | 81313280 | ID=MS.gene06322.t1.exon6;Parent=MS.gene06322.t1 |
| chr3.2 | CDS | 81313280 | 81313375 | 81313280 | ID=cds.MS.gene06322.t1;Parent=MS.gene06322.t1 |
| Gene Sequence |
| Protein sequence |
