Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064676.t1 | XP_013462133.1 | 91.8 | 269 | 13 | 1 | 1 | 260 | 40 | 308 | 3.40E-137 | 497.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064676.t1 | Q9FUW6 | 71.7 | 269 | 67 | 1 | 1 | 260 | 40 | 308 | 2.5e-109 | 396.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064676.t1 | A0A072V477 | 91.8 | 269 | 13 | 1 | 1 | 260 | 40 | 308 | 2.4e-137 | 497.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene064676 | 0.820433 | 6.88E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene064676 | 0.822907 | 1.84E-53 | -1.69E-46 |
| MS.gene049320 | MS.gene064676 | 0.810868 | 9.31E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene064676 | 0.829424 | 5.19E-55 | -1.69E-46 |
| MS.gene049614 | MS.gene064676 | 0.803119 | 4.06E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene064676 | 0.802164 | 6.39E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene064676 | 0.816693 | 4.85E-52 | -1.69E-46 |
| MS.gene050165 | MS.gene064676 | 0.802948 | 4.40E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene064676 | 0.802928 | 4.45E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene064676 | 0.82638 | 2.80E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene064676 | 0.814241 | 1.70E-51 | -1.69E-46 |
| MS.gene051228 | MS.gene064676 | 0.820478 | 6.71E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene064676 | 0.818661 | 1.75E-52 | -1.69E-46 |
| MS.gene051692 | MS.gene064676 | 0.802707 | 4.94E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene064676 | 0.818932 | 1.51E-52 | -1.69E-46 |
| MS.gene051858 | MS.gene064676 | 0.82558 | 4.34E-54 | -1.69E-46 |
| MS.gene051949 | MS.gene064676 | 0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene064676 | 0.830061 | 3.63E-55 | -1.69E-46 |
| MS.gene052290 | MS.gene064676 | 0.814099 | 1.83E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene064676 | 0.848234 | 6.98E-60 | -1.69E-46 |
| MS.gene052615 | MS.gene064676 | 0.811725 | 6.06E-51 | -1.69E-46 |
| MS.gene052870 | MS.gene064676 | 0.823459 | 1.37E-53 | -1.69E-46 |
| MS.gene052872 | MS.gene064676 | 0.815935 | 7.16E-52 | -1.69E-46 |
| MS.gene053009 | MS.gene064676 | 0.812952 | 3.27E-51 | -1.69E-46 |
| MS.gene053103 | MS.gene064676 | 0.824302 | 8.69E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene064676 | 0.82555 | 4.41E-54 | -1.69E-46 |
| MS.gene053213 | MS.gene064676 | 0.817492 | 3.21E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene064676 | 0.810073 | 1.38E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene064676 | 0.836148 | 1.11E-56 | -1.69E-46 |
| MS.gene053632 | MS.gene064676 | 0.810398 | 1.18E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene064676 | 0.807221 | 5.62E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene064676 | 0.828176 | 1.04E-54 | -1.69E-46 |
| MS.gene055206 | MS.gene064676 | 0.841441 | 4.74E-58 | -1.69E-46 |
| MS.gene055397 | MS.gene064676 | 0.83596 | 1.24E-56 | -1.69E-46 |
| MS.gene055499 | MS.gene064676 | 0.826706 | 2.34E-54 | -1.69E-46 |
| MS.gene055647 | MS.gene064676 | 0.809401 | 1.93E-50 | -1.69E-46 |
| MS.gene055722 | MS.gene064676 | 0.805544 | 1.27E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene064676 | 0.812985 | 3.22E-51 | -1.69E-46 |
| MS.gene055956 | MS.gene064676 | -0.803239 | 3.83E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene064676 | 0.832573 | 8.75E-56 | -1.69E-46 |
| MS.gene056549 | MS.gene064676 | 0.811867 | 5.65E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene064676 | 0.823561 | 1.30E-53 | -1.69E-46 |
| MS.gene057011 | MS.gene064676 | 0.80922 | 2.11E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene064676 | 0.837819 | 4.15E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene064676 | 0.82894 | 6.80E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene064676 | 0.830367 | 3.06E-55 | -1.69E-46 |
| MS.gene058723 | MS.gene064676 | 0.800184 | 1.62E-48 | -1.69E-46 |
| MS.gene058773 | MS.gene064676 | 0.80119 | 1.01E-48 | -1.69E-46 |
| MS.gene059029 | MS.gene064676 | 0.824804 | 6.62E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene064676 | 0.825932 | 3.58E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene064676 | 0.829007 | 6.55E-55 | -1.69E-46 |
| MS.gene059677 | MS.gene064676 | 0.820626 | 6.21E-53 | -1.69E-46 |
| MS.gene059858 | MS.gene064676 | 0.808482 | 3.03E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene064676 | 0.824551 | 7.59E-54 | -1.69E-46 |
| MS.gene059960 | MS.gene064676 | 0.839226 | 1.80E-57 | -1.69E-46 |
| MS.gene060804 | MS.gene064676 | 0.817082 | 3.97E-52 | -1.69E-46 |
| MS.gene060818 | MS.gene064676 | 0.819174 | 1.33E-52 | -1.69E-46 |
| MS.gene061041 | MS.gene064676 | 0.801683 | 8.02E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene064676 | 0.829021 | 6.50E-55 | -1.69E-46 |
| MS.gene061200 | MS.gene064676 | 0.827923 | 1.20E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064676.t1 | MTR_3g111990 | 91.822 | 269 | 13 | 1 | 1 | 260 | 40 | 308 | 0.0 | 502 |
| MS.gene064676.t1 | MTR_3g111980 | 71.218 | 271 | 67 | 2 | 1 | 260 | 40 | 310 | 1.71e-137 | 389 |
| MS.gene064676.t1 | MTR_3g116840 | 64.312 | 269 | 87 | 1 | 1 | 260 | 44 | 312 | 1.35e-128 | 367 |
| MS.gene064676.t1 | MTR_5g020740 | 63.197 | 269 | 90 | 1 | 1 | 260 | 41 | 309 | 7.57e-121 | 347 |
| MS.gene064676.t1 | MTR_4g070370 | 56.134 | 269 | 109 | 1 | 1 | 260 | 43 | 311 | 1.08e-104 | 307 |
| MS.gene064676.t1 | MTR_4g070340 | 54.406 | 261 | 115 | 1 | 1 | 257 | 42 | 302 | 6.22e-102 | 300 |
| MS.gene064676.t1 | MTR_4g070340 | 53.383 | 266 | 115 | 1 | 1 | 257 | 42 | 307 | 3.41e-101 | 298 |
| MS.gene064676.t1 | MTR_4g070340 | 54.918 | 244 | 101 | 1 | 23 | 257 | 15 | 258 | 1.61e-94 | 279 |
| MS.gene064676.t1 | MTR_5g020800 | 53.962 | 265 | 112 | 2 | 5 | 260 | 55 | 318 | 3.05e-94 | 280 |
| MS.gene064676.t1 | MTR_5g020760 | 53.585 | 265 | 113 | 2 | 5 | 260 | 55 | 318 | 8.13e-94 | 279 |
| MS.gene064676.t1 | MTR_4g070360 | 47.232 | 271 | 132 | 2 | 1 | 260 | 39 | 309 | 4.13e-85 | 256 |
| MS.gene064676.t1 | MTR_5g020760 | 54.762 | 210 | 86 | 1 | 5 | 205 | 55 | 264 | 8.05e-75 | 229 |
| MS.gene064676.t1 | MTR_8g071130 | 44.815 | 270 | 133 | 4 | 6 | 260 | 44 | 312 | 4.28e-69 | 216 |
| MS.gene064676.t1 | MTR_5g027290 | 43.123 | 269 | 136 | 4 | 6 | 259 | 44 | 310 | 1.80e-67 | 211 |
| MS.gene064676.t1 | MTR_5g027240 | 43.609 | 266 | 133 | 4 | 6 | 256 | 44 | 307 | 1.31e-66 | 209 |
| MS.gene064676.t1 | MTR_3g008100 | 39.925 | 268 | 147 | 4 | 2 | 260 | 43 | 305 | 1.97e-66 | 209 |
| MS.gene064676.t1 | MTR_3g008140 | 40.755 | 265 | 142 | 5 | 5 | 260 | 46 | 304 | 1.10e-63 | 202 |
| MS.gene064676.t1 | MTR_3g008100 | 39.179 | 268 | 142 | 4 | 2 | 260 | 43 | 298 | 4.33e-63 | 200 |
| MS.gene064676.t1 | MTR_3g007970 | 39.623 | 265 | 146 | 4 | 5 | 260 | 46 | 305 | 1.85e-61 | 196 |
| MS.gene064676.t1 | MTR_1g093720 | 36.330 | 267 | 159 | 2 | 5 | 260 | 52 | 318 | 5.81e-55 | 181 |
| MS.gene064676.t1 | MTR_3g008100 | 33.951 | 162 | 93 | 4 | 2 | 154 | 43 | 199 | 1.73e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064676.t1 | AT4G39230 | 63.941 | 269 | 88 | 1 | 1 | 260 | 40 | 308 | 2.69e-125 | 358 |
| MS.gene064676.t1 | AT1G75280 | 62.593 | 270 | 89 | 3 | 1 | 259 | 41 | 309 | 1.84e-117 | 338 |
| MS.gene064676.t1 | AT1G75290 | 61.481 | 270 | 93 | 2 | 1 | 259 | 41 | 310 | 1.92e-117 | 339 |
| MS.gene064676.t1 | AT1G75290 | 61.481 | 270 | 93 | 2 | 1 | 259 | 68 | 337 | 1.15e-116 | 338 |
| MS.gene064676.t1 | AT1G75300 | 55.282 | 284 | 99 | 4 | 1 | 259 | 41 | 321 | 4.86e-102 | 300 |
| MS.gene064676.t1 | AT1G19540 | 54.945 | 273 | 110 | 3 | 1 | 260 | 38 | 310 | 1.01e-95 | 283 |
| MS.gene064676.t1 | AT4G34540 | 46.923 | 260 | 129 | 1 | 10 | 260 | 47 | 306 | 3.00e-82 | 249 |
| MS.gene064676.t1 | AT1G19540 | 56.422 | 218 | 82 | 3 | 1 | 205 | 38 | 255 | 1.98e-74 | 228 |
| MS.gene064676.t1 | AT1G32100 | 40.370 | 270 | 144 | 4 | 6 | 260 | 50 | 317 | 8.23e-61 | 194 |
| MS.gene064676.t1 | AT4G13660 | 41.392 | 273 | 143 | 4 | 3 | 260 | 47 | 317 | 9.78e-61 | 194 |
| MS.gene064676.t1 | AT4G13660 | 41.392 | 273 | 143 | 4 | 3 | 260 | 47 | 317 | 9.78e-61 | 194 |
Find 66 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGACTATGGGTGTTAATT+TGG | 0.229530 | 3.4:+97045894 | MS.gene064676:CDS |
| AACATTACCAGTCTCTTTAA+TGG | 0.235620 | 3.4:-97046140 | None:intergenic |
| TTTGAGATTGAGCCTTCTTT+TGG | 0.245864 | 3.4:+97047161 | MS.gene064676:CDS |
| CCTCCACAATTTCACGACTA+TGG | 0.294665 | 3.4:+97045882 | MS.gene064676:CDS |
| GTTGGTAGATACATAGGTAT+AGG | 0.311190 | 3.4:-97046487 | None:intergenic |
| ATTTGCAGCTGTCTTCAATA+AGG | 0.334657 | 3.4:+97046725 | MS.gene064676:intron |
| GTTGAATGAGTAAATGTTCT+TGG | 0.342329 | 3.4:-97046826 | None:intergenic |
| GTATCTACCAACTCCTTTGC+TGG | 0.357028 | 3.4:+97046498 | MS.gene064676:CDS |
| GCCTTGTGGGAGAAGAAGAT+TGG | 0.369735 | 3.4:+97046858 | MS.gene064676:CDS |
| GTGGAGGAGCTTAGCCTTGG+TGG | 0.402912 | 3.4:-97045866 | None:intergenic |
| TCACACACATGCTGCTGATC+AGG | 0.417659 | 3.4:+97046102 | MS.gene064676:CDS |
| ATTGCTAATCCTACATTGTC+TGG | 0.420981 | 3.4:-97047101 | None:intergenic |
| ATGTCGAATTTGTACTTTCA+CGG | 0.422437 | 3.4:-97046442 | None:intergenic |
| AAGAGACAAAGTCATTATCT+TGG | 0.430812 | 3.4:+97046566 | MS.gene064676:CDS |
| TTGAATGAGTAAATGTTCTT+GGG | 0.442585 | 3.4:-97046825 | None:intergenic |
| TAATAGAGGATAAACTTCTC+AGG | 0.447457 | 3.4:+97046904 | MS.gene064676:CDS |
| TGGAGGAGCTTAGCCTTGGT+GGG | 0.448790 | 3.4:-97045865 | None:intergenic |
| CTTGGTGGACCTGTAGCTCC+AGG | 0.463568 | 3.4:-97046546 | None:intergenic |
| AGAGTGGTGTAGTTGACATC+CGG | 0.463970 | 3.4:-97047206 | None:intergenic |
| AATCCTACATTGTCTGGAAA+AGG | 0.466589 | 3.4:-97047095 | None:intergenic |
| CAACGATGTTATCGCCTTGT+GGG | 0.467739 | 3.4:+97046845 | MS.gene064676:CDS |
| TTTGTCCAACCTGGAGCTAC+AGG | 0.481668 | 3.4:+97046537 | MS.gene064676:CDS |
| AGAAGGCTCAATCTCAAAGT+TGG | 0.492703 | 3.4:-97047156 | None:intergenic |
| ATCGCTGCCATTAAAGAGAC+TGG | 0.495657 | 3.4:+97046133 | MS.gene064676:CDS |
| CTCCACAATTTCACGACTAT+GGG | 0.495937 | 3.4:+97045883 | MS.gene064676:CDS |
| AGAGACAAAGTCATTATCTT+GGG | 0.498507 | 3.4:+97046567 | MS.gene064676:CDS |
| CACCCATAGTCGTGAAATTG+TGG | 0.499376 | 3.4:-97045885 | None:intergenic |
| ATAATGACTTTGTCTCTTGG+TGG | 0.505831 | 3.4:-97046561 | None:intergenic |
| TTGGTAGATACATAGGTATA+GGG | 0.507969 | 3.4:-97046486 | None:intergenic |
| AGCCTTGGTGGGGTCAGACA+TGG | 0.508905 | 3.4:-97045854 | None:intergenic |
| AAGATAATGACTTTGTCTCT+TGG | 0.516542 | 3.4:-97046564 | None:intergenic |
| ATTCTCAAATGAAATGATCA+AGG | 0.517748 | 3.4:-97047238 | None:intergenic |
| CCTTGTGGGAGAAGAAGATT+GGG | 0.523799 | 3.4:+97046859 | MS.gene064676:CDS |
| AAACTTCTCAGGGATATTGA+AGG | 0.530402 | 3.4:+97046915 | MS.gene064676:CDS |
| GAAGCCTCAACCCCAAAAGA+AGG | 0.535959 | 3.4:-97047173 | None:intergenic |
| CCCAATCTTCTTCTCCCACA+AGG | 0.539941 | 3.4:-97046859 | None:intergenic |
| TCTCTACGATAATGAGAGCT+TGG | 0.541283 | 3.4:+97046036 | MS.gene064676:CDS |
| AAAGGAGTTGGTAGATACAT+AGG | 0.542824 | 3.4:-97046493 | None:intergenic |
| TTCAATAAGGAAGAAGACAT+TGG | 0.551282 | 3.4:+97046738 | MS.gene064676:CDS |
| TCAACGATGTTATCGCCTTG+TGG | 0.553409 | 3.4:+97046844 | MS.gene064676:CDS |
| GTACCAACATTTGTCCAACC+TGG | 0.556184 | 3.4:+97046528 | MS.gene064676:CDS |
| GGAGGAGCTTAGCCTTGGTG+GGG | 0.557357 | 3.4:-97045864 | None:intergenic |
| AAAATAACCAGCAAAGGAGT+TGG | 0.560210 | 3.4:-97046505 | None:intergenic |
| CGACATATGATTGAAGCTGA+AGG | 0.561768 | 3.4:+97046459 | MS.gene064676:CDS |
| TGAGGCTTCTGCTTTATACC+CGG | 0.563811 | 3.4:+97047187 | MS.gene064676:CDS |
| GAGTGGTGTAGTTGACATCC+GGG | 0.579953 | 3.4:-97047205 | None:intergenic |
| AAAGTCATTATCTTGGGTGA+TGG | 0.581506 | 3.4:+97046573 | MS.gene064676:CDS |
| GTGGACCTGTAGCTCCAGGT+TGG | 0.581878 | 3.4:-97046542 | None:intergenic |
| GCTCCAGGTTGGACAAATGT+TGG | 0.594940 | 3.4:-97046531 | None:intergenic |
| AATGAGTAAATGTTCTTGGG+AGG | 0.600435 | 3.4:-97046822 | None:intergenic |
| TTAAAGCTGTGGATGATCCA+AGG | 0.604389 | 3.4:+97046772 | MS.gene064676:CDS |
| TGGTACAAAATAACCAGCAA+AGG | 0.607224 | 3.4:-97046511 | None:intergenic |
| ATTGTGGAGGAGCTTAGCCT+TGG | 0.614967 | 3.4:-97045869 | None:intergenic |
| GGATGTCAACTACACCACTC+TGG | 0.615304 | 3.4:+97047208 | MS.gene064676:CDS |
| AATAGAGGATAAACTTCTCA+GGG | 0.615441 | 3.4:+97046905 | MS.gene064676:CDS |
| AACCTACACTATTAAAGCTG+TGG | 0.616425 | 3.4:+97046761 | MS.gene064676:CDS |
| GCTCAATCTCAAAGTTGGTG+TGG | 0.637181 | 3.4:-97047151 | None:intergenic |
| ATCCACAGCTTTAATAGTGT+AGG | 0.637952 | 3.4:-97046763 | None:intergenic |
| TTCAGAATTTGGGAACGACG+TGG | 0.641605 | 3.4:+97046380 | MS.gene064676:intron |
| AAATGTTCTTGGGAGGTCTG+AGG | 0.641726 | 3.4:-97046815 | None:intergenic |
| TGTCACTCAGTGTTTGTGAA+AGG | 0.666291 | 3.4:+97047125 | MS.gene064676:CDS |
| AGCAATGAAGCAAGTAGACG+TGG | 0.672283 | 3.4:+97046063 | MS.gene064676:CDS |
| TGTCAACTACACCACTCTGG+AGG | 0.681149 | 3.4:+97047211 | MS.gene064676:CDS |
| CCATAGTCGTGAAATTGTGG+AGG | 0.682789 | 3.4:-97045882 | None:intergenic |
| AACCATGTCTGACCCCACCA+AGG | 0.684946 | 3.4:+97045852 | None:intergenic |
| ATCAAGGCATTCCTCCAGAG+TGG | 0.685958 | 3.4:-97047222 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATGTTTATATTTAAATA+TGG | + | chr3.4:97047031-97047050 | MS.gene064676:intron | 10.0% |
| !!! | TATTACATAAAATTTTTCAA+GGG | - | chr3.4:97046889-97046908 | None:intergenic | 10.0% |
| !! | TGAAGAGAAATTTATAAAAA+GGG | + | chr3.4:97046985-97047004 | MS.gene064676:intron | 15.0% |
| !! | TTGAAGAGAAATTTATAAAA+AGG | + | chr3.4:97046984-97047003 | MS.gene064676:intron | 15.0% |
| !!! | AAACAAAAAAACTTTGATTT+TGG | + | chr3.4:97046263-97046282 | MS.gene064676:intron | 15.0% |
| !!! | CTATTACATAAAATTTTTCA+AGG | - | chr3.4:97046890-97046909 | None:intergenic | 15.0% |
| !!! | TGAAAAATTTTATGTAATAG+AGG | + | chr3.4:97046890-97046909 | MS.gene064676:CDS | 15.0% |
| !! | AACAATTTAAACAATGTCTT+TGG | - | chr3.4:97046310-97046329 | None:intergenic | 20.0% |
| !! | AATATAAGGTAAATTAAGAG+TGG | - | chr3.4:97045941-97045960 | None:intergenic | 20.0% |
| !! | ATATAAGGTAAATTAAGAGT+GGG | - | chr3.4:97045940-97045959 | None:intergenic | 20.0% |
| !! | GAGTATAAAATTTATGAAGA+GGG | + | chr3.4:97047007-97047026 | MS.gene064676:intron | 20.0% |
| !! | TGGTGATATACTATAATATA+AGG | - | chr3.4:97045955-97045974 | None:intergenic | 20.0% |
| ! | AAAATATGCAAAAGAAGAAG+AGG | - | chr3.4:97046180-97046199 | None:intergenic | 25.0% |
| ! | ATGCAAATTAAAATACAGTG+AGG | - | chr3.4:97046692-97046711 | None:intergenic | 25.0% |
| ! | GGAGTATAAAATTTATGAAG+AGG | + | chr3.4:97047006-97047025 | MS.gene064676:intron | 25.0% |
| ! | TTGAATGAGTAAATGTTCTT+GGG | - | chr3.4:97046828-97046847 | None:intergenic | 25.0% |
| !! | ATTAGAGTTTGAAATGAGAA+TGG | + | chr3.4:97045999-97046018 | MS.gene064676:intron | 25.0% |
| !!! | TTTTTGTTTTTGTTTGAGAG+AGG | - | chr3.4:97046252-97046271 | None:intergenic | 25.0% |
| AACATTACCAGTCTCTTTAA+TGG | - | chr3.4:97046143-97046162 | None:intergenic | 30.0% | |
| AAGAGACAAAGTCATTATCT+TGG | + | chr3.4:97046566-97046585 | MS.gene064676:CDS | 30.0% | |
| AAGATAATGACTTTGTCTCT+TGG | - | chr3.4:97046567-97046586 | None:intergenic | 30.0% | |
| AATAGAGGATAAACTTCTCA+GGG | + | chr3.4:97046905-97046924 | MS.gene064676:CDS | 30.0% | |
| AGAGACAAAGTCATTATCTT+GGG | + | chr3.4:97046567-97046586 | MS.gene064676:CDS | 30.0% | |
| ATGTCGAATTTGTACTTTCA+CGG | - | chr3.4:97046445-97046464 | None:intergenic | 30.0% | |
| CTCTAATATAGTAATATGCC+TGG | - | chr3.4:97045986-97046005 | None:intergenic | 30.0% | |
| GTTGAATGAGTAAATGTTCT+TGG | - | chr3.4:97046829-97046848 | None:intergenic | 30.0% | |
| TAATAGAGGATAAACTTCTC+AGG | + | chr3.4:97046904-97046923 | MS.gene064676:CDS | 30.0% | |
| TTCAATAAGGAAGAAGACAT+TGG | + | chr3.4:97046738-97046757 | MS.gene064676:CDS | 30.0% | |
| TTGGTAGATACATAGGTATA+GGG | - | chr3.4:97046489-97046508 | None:intergenic | 30.0% | |
| ! | AGAATTTTGTTCAATGTCCT+TGG | - | chr3.4:97046792-97046811 | None:intergenic | 30.0% |
| ! | AGATTTTTCCCTTCAGAATT+TGG | + | chr3.4:97046369-97046388 | MS.gene064676:intron | 30.0% |
| ! | GATTTTTCCCTTCAGAATTT+GGG | + | chr3.4:97046370-97046389 | MS.gene064676:intron | 30.0% |
| ! | TAAAGAGACTGGTAATGTTA+AGG | + | chr3.4:97046144-97046163 | MS.gene064676:intron | 30.0% |
| !!! | TTTGATTTTGGCTTGTTCTA+GGG | + | chr3.4:97046275-97046294 | MS.gene064676:intron | 30.0% |
| AAAATAACCAGCAAAGGAGT+TGG | - | chr3.4:97046508-97046527 | None:intergenic | 35.0% | |
| AAACTTCTCAGGGATATTGA+AGG | + | chr3.4:97046915-97046934 | MS.gene064676:CDS | 35.0% | |
| AAAGTCATTATCTTGGGTGA+TGG | + | chr3.4:97046573-97046592 | MS.gene064676:CDS | 35.0% | |
| AACCTACACTATTAAAGCTG+TGG | + | chr3.4:97046761-97046780 | MS.gene064676:CDS | 35.0% | |
| AATCCTACATTGTCTGGAAA+AGG | - | chr3.4:97047098-97047117 | None:intergenic | 35.0% | |
| AATGAGTAAATGTTCTTGGG+AGG | - | chr3.4:97046825-97046844 | None:intergenic | 35.0% | |
| ACAGTGAGGTATGCAAATAT+TGG | - | chr3.4:97046678-97046697 | None:intergenic | 35.0% | |
| ATAATGACTTTGTCTCTTGG+TGG | - | chr3.4:97046564-97046583 | None:intergenic | 35.0% | |
| ATTGCTAATCCTACATTGTC+TGG | - | chr3.4:97047104-97047123 | None:intergenic | 35.0% | |
| ATTTGCAGCTGTCTTCAATA+AGG | + | chr3.4:97046725-97046744 | MS.gene064676:intron | 35.0% | |
| TAATATGCCTGGATGTTCAT+TGG | - | chr3.4:97045975-97045994 | None:intergenic | 35.0% | |
| TATATCACCAATGAACATCC+AGG | + | chr3.4:97045965-97045984 | MS.gene064676:intron | 35.0% | |
| TGGTACAAAATAACCAGCAA+AGG | - | chr3.4:97046514-97046533 | None:intergenic | 35.0% | |
| ! | ATCCACAGCTTTAATAGTGT+AGG | - | chr3.4:97046766-97046785 | None:intergenic | 35.0% |
| ! | GTTGGTAGATACATAGGTAT+AGG | - | chr3.4:97046490-97046509 | None:intergenic | 35.0% |
| ! | GTTTGAAATGAGAATGGCAT+TGG | + | chr3.4:97046005-97046024 | MS.gene064676:intron | 35.0% |
| ! | TGGGTGTTTGAAATCTTACA+TGG | - | chr3.4:97045921-97045940 | None:intergenic | 35.0% |
| ! | TTGAGATTGAGCCTTCTTTT+GGG | + | chr3.4:97047162-97047181 | MS.gene064676:CDS | 35.0% |
| ! | TTGGGTGATGGCAATAAAAA+AGG | + | chr3.4:97046585-97046604 | MS.gene064676:CDS | 35.0% |
| !! | AAAGGAGTTGGTAGATACAT+AGG | - | chr3.4:97046496-97046515 | None:intergenic | 35.0% |
| !! | GTGGTTTAGTTCATGCATTT+TGG | + | chr3.4:97046635-97046654 | MS.gene064676:intron | 35.0% |
| !! | TTTGAGATTGAGCCTTCTTT+TGG | + | chr3.4:97047161-97047180 | MS.gene064676:CDS | 35.0% |
| !!! | CTTTGATTTTGGCTTGTTCT+AGG | + | chr3.4:97046274-97046293 | MS.gene064676:intron | 35.0% |
| AGAAGGCTCAATCTCAAAGT+TGG | - | chr3.4:97047159-97047178 | None:intergenic | 40.0% | |
| CACGACTATGGGTGTTAATT+TGG | + | chr3.4:97045894-97045913 | MS.gene064676:CDS | 40.0% | |
| CGACATATGATTGAAGCTGA+AGG | + | chr3.4:97046459-97046478 | MS.gene064676:CDS | 40.0% | |
| CTCCACAATTTCACGACTAT+GGG | + | chr3.4:97045883-97045902 | MS.gene064676:CDS | 40.0% | |
| TCTCTACGATAATGAGAGCT+TGG | + | chr3.4:97046036-97046055 | MS.gene064676:CDS | 40.0% | |
| TGCAAAAGAAGAAGAGGACA+AGG | - | chr3.4:97046174-97046193 | None:intergenic | 40.0% | |
| TGTCACTCAGTGTTTGTGAA+AGG | + | chr3.4:97047125-97047144 | MS.gene064676:CDS | 40.0% | |
| TTAAAGCTGTGGATGATCCA+AGG | + | chr3.4:97046772-97046791 | MS.gene064676:CDS | 40.0% | |
| TTAACCACTACTTCTACGCT+TGG | + | chr3.4:97046613-97046632 | MS.gene064676:intron | 40.0% | |
| TTCTCAGGGATATTGAAGGT+TGG | + | chr3.4:97046919-97046938 | MS.gene064676:intron | 40.0% | |
| ! | ACACCTTTTCCAGACAATGT+AGG | + | chr3.4:97047092-97047111 | MS.gene064676:CDS | 40.0% |
| ! | TGAGATTGAGCCTTCTTTTG+GGG | + | chr3.4:97047163-97047182 | MS.gene064676:CDS | 40.0% |
| !! | AAATGAGAATGGCATTGGCA+GGG | + | chr3.4:97046010-97046029 | MS.gene064676:intron | 40.0% |
| !!! | TACAGATTTTGCTGGCTCAA+CGG | - | chr3.4:97046418-97046437 | None:intergenic | 40.0% |
| AAATGTTCTTGGGAGGTCTG+AGG | - | chr3.4:97046818-97046837 | None:intergenic | 45.0% | |
| ACGTCGTTCCCAAATTCTGA+AGG | - | chr3.4:97046381-97046400 | None:intergenic | 45.0% | |
| AGAGTGGTGTAGTTGACATC+CGG | - | chr3.4:97047209-97047228 | None:intergenic | 45.0% | |
| AGCAATGAAGCAAGTAGACG+TGG | + | chr3.4:97046063-97046082 | MS.gene064676:CDS | 45.0% | |
| ATCGCTGCCATTAAAGAGAC+TGG | + | chr3.4:97046133-97046152 | MS.gene064676:CDS | 45.0% | |
| CAACGATGTTATCGCCTTGT+GGG | + | chr3.4:97046845-97046864 | MS.gene064676:CDS | 45.0% | |
| CACCCATAGTCGTGAAATTG+TGG | - | chr3.4:97045888-97045907 | None:intergenic | 45.0% | |
| CCATAGTCGTGAAATTGTGG+AGG | - | chr3.4:97045885-97045904 | None:intergenic | 45.0% | |
| CCTCCACAATTTCACGACTA+TGG | + | chr3.4:97045882-97045901 | MS.gene064676:CDS | 45.0% | |
| CCTTGTGGGAGAAGAAGATT+GGG | + | chr3.4:97046859-97046878 | MS.gene064676:CDS | 45.0% | |
| CGTCGTTCCCAAATTCTGAA+GGG | - | chr3.4:97046380-97046399 | None:intergenic | 45.0% | |
| GTACCAACATTTGTCCAACC+TGG | + | chr3.4:97046528-97046547 | MS.gene064676:CDS | 45.0% | |
| GTATCTACCAACTCCTTTGC+TGG | + | chr3.4:97046498-97046517 | MS.gene064676:CDS | 45.0% | |
| TCAACGATGTTATCGCCTTG+TGG | + | chr3.4:97046844-97046863 | MS.gene064676:CDS | 45.0% | |
| TGAGGCTTCTGCTTTATACC+CGG | + | chr3.4:97047187-97047206 | MS.gene064676:CDS | 45.0% | |
| TTCAGAATTTGGGAACGACG+TGG | + | chr3.4:97046380-97046399 | MS.gene064676:intron | 45.0% | |
| ! | ACGGCGAATACAGATTTTGC+TGG | - | chr3.4:97046426-97046445 | None:intergenic | 45.0% |
| !! | AATGAGAATGGCATTGGCAG+GGG | + | chr3.4:97046011-97046030 | MS.gene064676:intron | 45.0% |
| !! | GAAATGAGAATGGCATTGGC+AGG | + | chr3.4:97046009-97046028 | MS.gene064676:intron | 45.0% |
| !! | GCTCAATCTCAAAGTTGGTG+TGG | - | chr3.4:97047154-97047173 | None:intergenic | 45.0% |
| ACCACCAAGCGTAGAAGTAG+TGG | - | chr3.4:97046620-97046639 | None:intergenic | 50.0% | |
| ACCACTACTTCTACGCTTGG+TGG | + | chr3.4:97046616-97046635 | MS.gene064676:intron | 50.0% | |
| ATTGTGGAGGAGCTTAGCCT+TGG | - | chr3.4:97045872-97045891 | None:intergenic | 50.0% | |
| CCCAATCTTCTTCTCCCACA+AGG | - | chr3.4:97046862-97046881 | None:intergenic | 50.0% | |
| GAAGCCTCAACCCCAAAAGA+AGG | - | chr3.4:97047176-97047195 | None:intergenic | 50.0% | |
| GAGTGGTGTAGTTGACATCC+GGG | - | chr3.4:97047208-97047227 | None:intergenic | 50.0% | |
| GCCTTGTGGGAGAAGAAGAT+TGG | + | chr3.4:97046858-97046877 | MS.gene064676:CDS | 50.0% | |
| GGATGTCAACTACACCACTC+TGG | + | chr3.4:97047208-97047227 | MS.gene064676:CDS | 50.0% | |
| TCACACACATGCTGCTGATC+AGG | + | chr3.4:97046102-97046121 | MS.gene064676:CDS | 50.0% | |
| TGTCAACTACACCACTCTGG+AGG | + | chr3.4:97047211-97047230 | MS.gene064676:CDS | 50.0% | |
| TTTGTCCAACCTGGAGCTAC+AGG | + | chr3.4:97046537-97046556 | MS.gene064676:CDS | 50.0% | |
| ! | ATCAAGGCATTCCTCCAGAG+TGG | - | chr3.4:97047225-97047244 | None:intergenic | 50.0% |
| ! | GCTCCAGGTTGGACAAATGT+TGG | - | chr3.4:97046534-97046553 | None:intergenic | 50.0% |
| !! | ATGAGAATGGCATTGGCAGG+GGG | + | chr3.4:97046012-97046031 | MS.gene064676:intron | 50.0% |
| !!! | ATTTTGCTGGCTCAACGGCA+TGG | - | chr3.4:97046413-97046432 | None:intergenic | 50.0% |
| !!! | TGAGCCTTCTTTTGGGGTTG+AGG | + | chr3.4:97047169-97047188 | MS.gene064676:CDS | 50.0% |
| !! | TGGAGGAGCTTAGCCTTGGT+GGG | - | chr3.4:97045868-97045887 | None:intergenic | 55.0% |
| GTGGACCTGTAGCTCCAGGT+TGG | - | chr3.4:97046545-97046564 | None:intergenic | 60.0% | |
| ! | CTTGGTGGACCTGTAGCTCC+AGG | - | chr3.4:97046549-97046568 | None:intergenic | 60.0% |
| !! | GGAGGAGCTTAGCCTTGGTG+GGG | - | chr3.4:97045867-97045886 | None:intergenic | 60.0% |
| !! | GTGGAGGAGCTTAGCCTTGG+TGG | - | chr3.4:97045869-97045888 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 97045856 | 97047256 | 97045856 | ID=MS.gene064676 |
| chr3.4 | mRNA | 97045856 | 97047256 | 97045856 | ID=MS.gene064676.t1;Parent=MS.gene064676 |
| chr3.4 | exon | 97045856 | 97045921 | 97045856 | ID=MS.gene064676.t1.exon1;Parent=MS.gene064676.t1 |
| chr3.4 | CDS | 97045856 | 97045921 | 97045856 | ID=cds.MS.gene064676.t1;Parent=MS.gene064676.t1 |
| chr3.4 | exon | 97046031 | 97046154 | 97046031 | ID=MS.gene064676.t1.exon2;Parent=MS.gene064676.t1 |
| chr3.4 | CDS | 97046031 | 97046154 | 97046031 | ID=cds.MS.gene064676.t1;Parent=MS.gene064676.t1 |
| chr3.4 | exon | 97046385 | 97046606 | 97046385 | ID=MS.gene064676.t1.exon3;Parent=MS.gene064676.t1 |
| chr3.4 | CDS | 97046385 | 97046606 | 97046385 | ID=cds.MS.gene064676.t1;Parent=MS.gene064676.t1 |
| chr3.4 | exon | 97046733 | 97046936 | 97046733 | ID=MS.gene064676.t1.exon4;Parent=MS.gene064676.t1 |
| chr3.4 | CDS | 97046733 | 97046936 | 97046733 | ID=cds.MS.gene064676.t1;Parent=MS.gene064676.t1 |
| chr3.4 | exon | 97047090 | 97047256 | 97047090 | ID=MS.gene064676.t1.exon5;Parent=MS.gene064676.t1 |
| chr3.4 | CDS | 97047090 | 97047256 | 97047090 | ID=cds.MS.gene064676.t1;Parent=MS.gene064676.t1 |
| Gene Sequence |
| Protein sequence |
