Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069355.t1 | XP_003621060.1 | 88.4 | 172 | 20 | 0 | 2 | 173 | 7 | 178 | 2.20E-84 | 321.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069355.t1 | Q9SXZ2 | 64.9 | 168 | 58 | 1 | 4 | 171 | 9 | 175 | 1.2e-62 | 240.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069355.t1 | F8T7T3 | 88.4 | 172 | 20 | 0 | 2 | 173 | 7 | 178 | 1.6e-84 | 321.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene069355 | 0.802461 | 5.55E-49 | -1.69E-46 |
| MS.gene049232 | MS.gene069355 | 0.859678 | 3.50E-63 | -1.69E-46 |
| MS.gene049552 | MS.gene069355 | 0.847841 | 8.96E-60 | -1.69E-46 |
| MS.gene049600 | MS.gene069355 | 0.805598 | 1.24E-49 | -1.69E-46 |
| MS.gene049656 | MS.gene069355 | 0.843855 | 1.08E-58 | -1.69E-46 |
| MS.gene049657 | MS.gene069355 | 0.84428 | 8.33E-59 | -1.69E-46 |
| MS.gene05010 | MS.gene069355 | 0.813696 | 2.25E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene069355 | 0.832701 | 8.14E-56 | -1.69E-46 |
| MS.gene050216 | MS.gene069355 | 0.815392 | 9.47E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene069355 | 0.823052 | 1.70E-53 | -1.69E-46 |
| MS.gene050496 | MS.gene069355 | 0.832145 | 1.12E-55 | -1.69E-46 |
| MS.gene050502 | MS.gene069355 | 0.847695 | 9.82E-60 | -1.69E-46 |
| MS.gene050504 | MS.gene069355 | 0.809998 | 1.43E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene069355 | 0.820609 | 6.27E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene069355 | 0.805594 | 1.24E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene069355 | 0.810369 | 1.19E-50 | -1.69E-46 |
| MS.gene05118 | MS.gene069355 | 0.812113 | 4.99E-51 | -1.69E-46 |
| MS.gene051509 | MS.gene069355 | 0.811509 | 6.76E-51 | -1.69E-46 |
| MS.gene051551 | MS.gene069355 | 0.817594 | 3.04E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene069355 | 0.816569 | 5.17E-52 | -1.69E-46 |
| MS.gene052482 | MS.gene069355 | 0.812783 | 3.56E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene069355 | 0.822533 | 2.25E-53 | -1.69E-46 |
| MS.gene052503 | MS.gene069355 | 0.815945 | 7.13E-52 | -1.69E-46 |
| MS.gene052506 | MS.gene069355 | 0.800129 | 1.67E-48 | -1.69E-46 |
| MS.gene052823 | MS.gene069355 | 0.826551 | 2.55E-54 | -1.69E-46 |
| MS.gene052825 | MS.gene069355 | 0.813067 | 3.09E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene069355 | 0.837755 | 4.31E-57 | -1.69E-46 |
| MS.gene053505 | MS.gene069355 | 0.830478 | 2.87E-55 | -1.69E-46 |
| MS.gene053574 | MS.gene069355 | 0.817977 | 2.49E-52 | -1.69E-46 |
| MS.gene053626 | MS.gene069355 | 0.837753 | 4.32E-57 | -1.69E-46 |
| MS.gene053633 | MS.gene069355 | 0.824548 | 7.60E-54 | -1.69E-46 |
| MS.gene054595 | MS.gene069355 | 0.81217 | 4.85E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene069355 | 0.81333 | 2.70E-51 | -1.69E-46 |
| MS.gene055750 | MS.gene069355 | 0.803975 | 2.70E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene069355 | 0.806749 | 7.07E-50 | -1.69E-46 |
| MS.gene056040 | MS.gene069355 | 0.801366 | 9.32E-49 | -1.69E-46 |
| MS.gene056046 | MS.gene069355 | 0.863124 | 3.11E-64 | -1.69E-46 |
| MS.gene056166 | MS.gene069355 | 0.803419 | 3.52E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene069355 | 0.855422 | 6.38E-62 | -1.69E-46 |
| MS.gene056878 | MS.gene069355 | 0.833413 | 5.41E-56 | -1.69E-46 |
| MS.gene057086 | MS.gene069355 | 0.81234 | 4.45E-51 | -1.69E-46 |
| MS.gene057687 | MS.gene069355 | 0.802601 | 5.19E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene069355 | 0.821186 | 4.62E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene069355 | 0.829691 | 4.47E-55 | -1.69E-46 |
| MS.gene058183 | MS.gene069355 | 0.833123 | 6.39E-56 | -1.69E-46 |
| MS.gene059034 | MS.gene069355 | 0.828641 | 8.03E-55 | -1.69E-46 |
| MS.gene059367 | MS.gene069355 | 0.841048 | 6.02E-58 | -1.69E-46 |
| MS.gene059837 | MS.gene069355 | 0.803876 | 2.83E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene069355 | 0.818645 | 1.76E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene069355 | 0.82322 | 1.56E-53 | -1.69E-46 |
| MS.gene060482 | MS.gene069355 | 0.847372 | 1.21E-59 | -1.69E-46 |
| MS.gene060595 | MS.gene069355 | -0.824585 | 7.45E-54 | -1.69E-46 |
| MS.gene060778 | MS.gene069355 | 0.868795 | 5.01E-66 | -1.69E-46 |
| MS.gene06077 | MS.gene069355 | 0.828868 | 7.08E-55 | -1.69E-46 |
| MS.gene06097 | MS.gene069355 | 0.81607 | 6.68E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene069355 | 0.826869 | 2.14E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069355.t1 | MTR_7g006690 | 88.372 | 172 | 20 | 0 | 2 | 173 | 7 | 178 | 5.96e-113 | 318 |
| MS.gene069355.t1 | MTR_7g006630 | 88.439 | 173 | 20 | 0 | 1 | 173 | 1 | 173 | 9.89e-112 | 315 |
| MS.gene069355.t1 | MTR_6g033040 | 67.647 | 170 | 54 | 1 | 2 | 171 | 7 | 175 | 1.06e-81 | 239 |
| MS.gene069355.t1 | MTR_7g084970 | 66.667 | 168 | 55 | 1 | 2 | 169 | 7 | 173 | 1.53e-79 | 234 |
| MS.gene069355.t1 | MTR_7g085020 | 61.905 | 168 | 63 | 1 | 2 | 169 | 8 | 174 | 7.32e-73 | 217 |
| MS.gene069355.t1 | MTR_7g085040 | 60.736 | 163 | 62 | 2 | 8 | 170 | 10 | 170 | 1.03e-68 | 206 |
| MS.gene069355.t1 | MTR_0020s0120 | 56.805 | 169 | 72 | 1 | 1 | 169 | 5 | 172 | 1.30e-66 | 201 |
| MS.gene069355.t1 | MTR_7g104460 | 55.689 | 167 | 72 | 2 | 4 | 169 | 9 | 174 | 2.14e-62 | 190 |
| MS.gene069355.t1 | MTR_0020s0120 | 55.030 | 169 | 68 | 2 | 1 | 169 | 5 | 165 | 1.87e-61 | 187 |
| MS.gene069355.t1 | MTR_1g060190 | 53.125 | 160 | 72 | 2 | 2 | 159 | 7 | 165 | 1.42e-58 | 181 |
| MS.gene069355.t1 | MTR_2g086270 | 48.521 | 169 | 85 | 2 | 2 | 169 | 6 | 173 | 1.40e-56 | 176 |
| MS.gene069355.t1 | MTR_8g106840 | 48.824 | 170 | 84 | 3 | 1 | 169 | 6 | 173 | 1.09e-46 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069355.t1 | AT1G65480 | 64.118 | 170 | 60 | 1 | 2 | 171 | 51 | 219 | 1.35e-80 | 238 |
| MS.gene069355.t1 | AT1G65480 | 64.118 | 170 | 60 | 1 | 2 | 171 | 7 | 175 | 1.36e-80 | 236 |
| MS.gene069355.t1 | AT4G20370 | 62.130 | 169 | 63 | 1 | 2 | 170 | 7 | 174 | 2.33e-76 | 226 |
| MS.gene069355.t1 | AT5G62040 | 53.988 | 163 | 74 | 1 | 4 | 165 | 8 | 170 | 8.88e-61 | 186 |
| MS.gene069355.t1 | AT5G03840 | 53.892 | 167 | 75 | 2 | 4 | 169 | 12 | 177 | 4.53e-59 | 182 |
| MS.gene069355.t1 | AT2G27550 | 49.704 | 169 | 84 | 1 | 2 | 169 | 7 | 175 | 1.53e-57 | 178 |
| MS.gene069355.t1 | AT1G18100 | 50.292 | 171 | 81 | 3 | 1 | 169 | 5 | 173 | 6.71e-51 | 161 |
Find 53 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGGTGGGTTAACTATT+TGG | 0.101664 | 7.1:-87662857 | None:intergenic |
| TTACAAATTCAGTGTCTTTC+AGG | 0.122353 | 7.1:+87662781 | MS.gene069355:CDS |
| AAAGACACTGAATTTGTAAA+AGG | 0.219593 | 7.1:-87662777 | None:intergenic |
| CTTGTTGTTGGTGGTGTAAT+TGG | 0.225955 | 7.1:+87662741 | MS.gene069355:CDS |
| TTTGCAGAAGTTTACAATCT+TGG | 0.279344 | 7.1:+87665743 | MS.gene069355:CDS |
| TGAATCCCTCTTGTTGGTCT+TGG | 0.316500 | 7.1:-87665635 | None:intergenic |
| TCTTGGTGGGTTAACTATTT+GGG | 0.334065 | 7.1:-87662856 | None:intergenic |
| CCCTGTAGTCGCTGGAATAT+TGG | 0.340527 | 7.1:-87665263 | None:intergenic |
| TCAGTAGGGCTTGGTGCATC+AGG | 0.356176 | 7.1:-87663632 | None:intergenic |
| TACAGGTATTCCCTCATATT+AGG | 0.366238 | 7.1:-87663656 | None:intergenic |
| TTGTGGTTATAATTATTAGA+TGG | 0.404057 | 7.1:-87665831 | None:intergenic |
| TTTCCACCAACTTGAACTCT+TGG | 0.407751 | 7.1:-87662873 | None:intergenic |
| CCAGAGTGTGTAGGGTTCTC+AGG | 0.411027 | 7.1:-87662899 | None:intergenic |
| TGTTGTTTAAGCAACCTTGT+AGG | 0.415361 | 7.1:+87665672 | MS.gene069355:CDS |
| CCACCAACTTGAACTCTTGG+TGG | 0.429744 | 7.1:-87662870 | None:intergenic |
| TACAAATTCAGTGTCTTTCA+GGG | 0.444238 | 7.1:+87662782 | MS.gene069355:CDS |
| GCCCTACTGATCCTAATATG+AGG | 0.445100 | 7.1:+87663645 | MS.gene069355:CDS |
| TGTCAACGAGAAAGTGGTTC+CGG | 0.448740 | 7.1:+87665794 | MS.gene069355:CDS |
| ACCAATATTCCAGCGACTAC+AGG | 0.450659 | 7.1:+87665262 | MS.gene069355:CDS |
| ATATGAGGGAATACCTGTAT+TGG | 0.453295 | 7.1:+87663660 | MS.gene069355:CDS |
| ACACGATGAATCCCTCTTGT+TGG | 0.458184 | 7.1:-87665641 | None:intergenic |
| TTCAATTGTCAACGAGAAAG+TGG | 0.476637 | 7.1:+87665788 | MS.gene069355:CDS |
| TTGAAATAGAGAGCAGCAAC+AGG | 0.483630 | 7.1:-87665770 | None:intergenic |
| ATGAATTCCCTTGTTGTTGG+TGG | 0.489339 | 7.1:+87662732 | MS.gene069355:CDS |
| AAATTCAAACTTACCAATAC+AGG | 0.502537 | 7.1:-87663673 | None:intergenic |
| GCGACTACAGGGACAACATT+CGG | 0.503478 | 7.1:+87665274 | MS.gene069355:CDS |
| AATGTTGTCCCTGTAGTCGC+TGG | 0.506880 | 7.1:-87665271 | None:intergenic |
| CACCAACTTGAACTCTTGGT+GGG | 0.509185 | 7.1:-87662869 | None:intergenic |
| TATACCAACCAGAGTGTGTA+GGG | 0.509279 | 7.1:-87662907 | None:intergenic |
| ATATTAGGATCAGTAGGGCT+TGG | 0.509781 | 7.1:-87663641 | None:intergenic |
| AAGACACTGAATTTGTAAAA+GGG | 0.531689 | 7.1:-87662776 | None:intergenic |
| GCTAATATAGTGTGCCTACA+AGG | 0.535198 | 7.1:-87665686 | None:intergenic |
| CCACCAAGAGTTCAAGTTGG+TGG | 0.538019 | 7.1:+87662870 | MS.gene069355:CDS |
| GATGGTTAGCCTCCTTCCAC+CGG | 0.542124 | 7.1:-87665813 | None:intergenic |
| GAGAAAGTGGTTCCGGTGGA+AGG | 0.542228 | 7.1:+87665801 | MS.gene069355:CDS |
| CAGTAGGGCTTGGTGCATCA+GGG | 0.543914 | 7.1:-87663631 | None:intergenic |
| TCAATGAATTCCCTTGTTGT+TGG | 0.548648 | 7.1:+87662729 | None:intergenic |
| CCCTCATATTAGGATCAGTA+GGG | 0.548872 | 7.1:-87663646 | None:intergenic |
| CCCTACTGATCCTAATATGA+GGG | 0.564661 | 7.1:+87663646 | MS.gene069355:CDS |
| GAAAATCCAAGACCAACAAG+AGG | 0.566107 | 7.1:+87665629 | MS.gene069355:CDS |
| CCTGAGAACCCTACACACTC+TGG | 0.566847 | 7.1:+87662899 | MS.gene069355:CDS |
| CAATTACACCACCAACAACA+AGG | 0.568356 | 7.1:-87662740 | None:intergenic |
| TCCCTCATATTAGGATCAGT+AGG | 0.580960 | 7.1:-87663647 | None:intergenic |
| CCAATATTCCAGCGACTACA+GGG | 0.601358 | 7.1:+87665263 | MS.gene069355:CDS |
| GGTGGGTTAACTATTTGGGA+CGG | 0.602001 | 7.1:-87662852 | None:intergenic |
| GTATACCAACCAGAGTGTGT+AGG | 0.613080 | 7.1:-87662908 | None:intergenic |
| AAAATCCAAGACCAACAAGA+GGG | 0.616950 | 7.1:+87665630 | MS.gene069355:CDS |
| CAACGAGAAAGTGGTTCCGG+TGG | 0.628002 | 7.1:+87665797 | MS.gene069355:CDS |
| AAAGTGGTTCCGGTGGAAGG+AGG | 0.632372 | 7.1:+87665804 | MS.gene069355:CDS |
| AACCCACCAAGAGTTCAAGT+TGG | 0.642757 | 7.1:+87662867 | MS.gene069355:CDS |
| AATAACAAAGAAGTCATCAA+CGG | 0.645377 | 7.1:+87662816 | MS.gene069355:CDS |
| AATTACACCACCAACAACAA+GGG | 0.656428 | 7.1:-87662739 | None:intergenic |
| AACAAAGAAGTCATCAACGG+TGG | 0.689200 | 7.1:+87662819 | MS.gene069355:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCCAAAAATATTATAAAT+TGG | - | chr7.1:87664253-87664272 | None:intergenic | 10.0% |
| !! | TTATTTATTAAAGATCTATT+TGG | - | chr7.1:87664087-87664106 | None:intergenic | 10.0% |
| !! | TTGTATAAATATTCAAAAAA+TGG | - | chr7.1:87664293-87664312 | None:intergenic | 10.0% |
| !!! | AATTTTTTAATAATTTAGCA+TGG | + | chr7.1:87664449-87664468 | MS.gene069355:intron | 10.0% |
| !!! | ATACATTTTTATATATAACA+AGG | + | chr7.1:87665392-87665411 | MS.gene069355:intron | 10.0% |
| !!! | ATCATATTTTTATTTTGTTT+CGG | + | chr7.1:87663738-87663757 | MS.gene069355:intron | 10.0% |
| !!! | TAATATTTTTGGAATTTATA+AGG | + | chr7.1:87664258-87664277 | MS.gene069355:intron | 10.0% |
| !!! | TACATTTTTATATATAACAA+GGG | + | chr7.1:87665393-87665412 | MS.gene069355:intron | 10.0% |
| !! | AATACAAAATAAACCTAATT+GGG | + | chr7.1:87663521-87663540 | MS.gene069355:intron | 15.0% |
| !! | ACAAAATAAAAATATGATTG+TGG | - | chr7.1:87663736-87663755 | None:intergenic | 15.0% |
| !! | GATTATGTGTTAATTAATTT+GGG | - | chr7.1:87663475-87663494 | None:intergenic | 15.0% |
| !! | TGATAAATATTATTATGTCT+TGG | + | chr7.1:87663770-87663789 | MS.gene069355:intron | 15.0% |
| !! | TGATTATGTGTTAATTAATT+TGG | - | chr7.1:87663476-87663495 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAGTGTTGTATTT+AGG | + | chr7.1:87664913-87664932 | MS.gene069355:intron | 15.0% |
| !!! | CAACCAATTTATAATATTTT+TGG | + | chr7.1:87664247-87664266 | MS.gene069355:intron | 15.0% |
| !!! | TATATTTTTCATGAATTCAA+AGG | - | chr7.1:87664603-87664622 | None:intergenic | 15.0% |
| !! | AGTGTAAGAACAAATAATTT+GGG | - | chr7.1:87664340-87664359 | None:intergenic | 20.0% |
| !! | ATATTCAAAAAATGGTAAGT+TGG | - | chr7.1:87664285-87664304 | None:intergenic | 20.0% |
| !! | ATCAAAATAAAGATAAACAG+TGG | - | chr7.1:87664754-87664773 | None:intergenic | 20.0% |
| !! | CAATACAAAATAAACCTAAT+TGG | + | chr7.1:87663520-87663539 | MS.gene069355:intron | 20.0% |
| !! | GAAAAATATAACTTCAATTG+TGG | + | chr7.1:87664613-87664632 | MS.gene069355:intron | 20.0% |
| !! | TAGTGTAAGAACAAATAATT+TGG | - | chr7.1:87664341-87664360 | None:intergenic | 20.0% |
| !! | TATAGAAATTAGAGTTGAAA+CGG | + | chr7.1:87663021-87663040 | MS.gene069355:intron | 20.0% |
| !! | TATTTAGGTCAGAAAATAAT+TGG | + | chr7.1:87664928-87664947 | MS.gene069355:intron | 20.0% |
| !! | TCAAAATAAAGATAAACAGT+GGG | - | chr7.1:87664753-87664772 | None:intergenic | 20.0% |
| !! | TTGTATTGAAGTAATGTTAT+TGG | - | chr7.1:87663508-87663527 | None:intergenic | 20.0% |
| !! | TTTCTATATAAAAATCTCCT+TGG | - | chr7.1:87663009-87663028 | None:intergenic | 20.0% |
| !!! | AGTTTTTCACCTTTTTTTTA+AGG | - | chr7.1:87663371-87663390 | None:intergenic | 20.0% |
| !!! | CTTTCACTAATTAAAGATTT+TGG | - | chr7.1:87663562-87663581 | None:intergenic | 20.0% |
| !!! | GACATAACTTTTTTTTTGAA+AGG | - | chr7.1:87663166-87663185 | None:intergenic | 20.0% |
| !!! | GTTTATCTTTATTTTGATGA+TGG | + | chr7.1:87664756-87664775 | MS.gene069355:intron | 20.0% |
| ! | AAAAATAAGCCAAACAAAAG+AGG | - | chr7.1:87663894-87663913 | None:intergenic | 25.0% |
| ! | AAACTCCTTCCTTAAAAAAA+AGG | + | chr7.1:87663359-87663378 | MS.gene069355:intron | 25.0% |
| ! | AAAGACACTGAATTTGTAAA+AGG | - | chr7.1:87662780-87662799 | None:intergenic | 25.0% |
| ! | AAATTCAAACTTACCAATAC+AGG | - | chr7.1:87663676-87663695 | None:intergenic | 25.0% |
| ! | AAGACACTGAATTTGTAAAA+GGG | - | chr7.1:87662779-87662798 | None:intergenic | 25.0% |
| ! | AAGTAACTTTCTTCTATGTT+TGG | - | chr7.1:87663112-87663131 | None:intergenic | 25.0% |
| ! | AATAACAAAGAAGTCATCAA+CGG | + | chr7.1:87662816-87662835 | MS.gene069355:CDS | 25.0% |
| ! | AATACACAACTTATGATTTG+CGG | + | chr7.1:87664414-87664433 | MS.gene069355:intron | 25.0% |
| ! | AGTTCAAATTGCCAAATTAA+TGG | + | chr7.1:87663268-87663287 | MS.gene069355:intron | 25.0% |
| ! | ATAGTTCATTCTTTGCAATT+TGG | + | chr7.1:87664703-87664722 | MS.gene069355:intron | 25.0% |
| ! | ATGCATTTGAACAATGTTTA+TGG | + | chr7.1:87664806-87664825 | MS.gene069355:intron | 25.0% |
| ! | GGTTATATACAAAGTATAAG+AGG | + | chr7.1:87663049-87663068 | MS.gene069355:intron | 25.0% |
| ! | TTAAGAGACATTAATCCATA+AGG | + | chr7.1:87663133-87663152 | MS.gene069355:intron | 25.0% |
| !! | TTTTTATATATAACAAGGGC+CGG | + | chr7.1:87665397-87665416 | MS.gene069355:intron | 25.0% |
| !! | TTTTTGATAAGTCAATTCAC+TGG | - | chr7.1:87664393-87664412 | None:intergenic | 25.0% |
| !!! | ATATTTTAAGAGTGCGTTTT+AGG | + | chr7.1:87663867-87663886 | MS.gene069355:intron | 25.0% |
| !!! | ATTAGTGAAAGCTTTTTTCT+AGG | + | chr7.1:87663571-87663590 | MS.gene069355:intron | 25.0% |
| !!! | CACGTTGTTTTATTAATTGT+AGG | + | chr7.1:87665587-87665606 | MS.gene069355:intron | 25.0% |
| !!! | TATTTTAAGAGTGCGTTTTA+GGG | + | chr7.1:87663868-87663887 | MS.gene069355:intron | 25.0% |
| !!! | TTAGTGAAAGCTTTTTTCTA+GGG | + | chr7.1:87663572-87663591 | MS.gene069355:intron | 25.0% |
| !!! | TTATTTCTTTTGAACAACCA+AGG | + | chr7.1:87662989-87663008 | MS.gene069355:intron | 25.0% |
| !!! | TTTCACCTTTTTTTTAAGGA+AGG | - | chr7.1:87663367-87663386 | None:intergenic | 25.0% |
| AATTAGAGTTGAAACGGTTT+AGG | + | chr7.1:87663027-87663046 | MS.gene069355:intron | 30.0% | |
| ACCATTTCCCTCTTTATTAT+TGG | + | chr7.1:87665220-87665239 | MS.gene069355:intron | 30.0% | |
| ATAGCGATCCAATAATAAAG+AGG | - | chr7.1:87665231-87665250 | None:intergenic | 30.0% | |
| ATTAGAGTTGAAACGGTTTA+GGG | + | chr7.1:87663028-87663047 | MS.gene069355:intron | 30.0% | |
| CTAGAAATGGCAATAAGTTT+CGG | - | chr7.1:87663247-87663266 | None:intergenic | 30.0% | |
| CTATAGGACTTAAATTTGGT+TGG | - | chr7.1:87664366-87664385 | None:intergenic | 30.0% | |
| GACAATATTTCTTGTAGTGA+AGG | - | chr7.1:87663297-87663316 | None:intergenic | 30.0% | |
| GCAATTTGAACTACTAGAAA+TGG | - | chr7.1:87663260-87663279 | None:intergenic | 30.0% | |
| TAACTTTCTTCTATGTTTGG+AGG | - | chr7.1:87663109-87663128 | None:intergenic | 30.0% | |
| TACAAATTCAGTGTCTTTCA+GGG | + | chr7.1:87662782-87662801 | MS.gene069355:CDS | 30.0% | |
| TAGCGATCCAATAATAAAGA+GGG | - | chr7.1:87665230-87665249 | None:intergenic | 30.0% | |
| TATACAAAGTATAAGAGGCA+TGG | + | chr7.1:87663054-87663073 | MS.gene069355:intron | 30.0% | |
| TCCAATAATAAAGAGGGAAA+TGG | - | chr7.1:87665224-87665243 | None:intergenic | 30.0% | |
| TTACAAATTCAGTGTCTTTC+AGG | + | chr7.1:87662781-87662800 | MS.gene069355:CDS | 30.0% | |
| TTATTATTGGATCGCTATAC+AGG | + | chr7.1:87665233-87665252 | MS.gene069355:intron | 30.0% | |
| TTTGCAGAAGTTTACAATCT+TGG | + | chr7.1:87665743-87665762 | MS.gene069355:CDS | 30.0% | |
| ! | AGATTTTGGATCCTTCTAAT+TGG | - | chr7.1:87663548-87663567 | None:intergenic | 30.0% |
| ! | ATAAAATTTTGTCTCGATCG+AGG | - | chr7.1:87665713-87665732 | None:intergenic | 30.0% |
| ! | ATACACAACTTATGATTTGC+GGG | + | chr7.1:87664415-87664434 | MS.gene069355:intron | 30.0% |
| ! | TGGCTAGAATTCACATTTTA+AGG | - | chr7.1:87665452-87665471 | None:intergenic | 30.0% |
| !! | CTTAGAAACGGTTTTTGATT+AGG | - | chr7.1:87663198-87663217 | None:intergenic | 30.0% |
| !!! | TTTTTTGTCAAGTAGTCTAG+TGG | - | chr7.1:87665472-87665491 | None:intergenic | 30.0% |
| AAAATCCAAGACCAACAAGA+GGG | + | chr7.1:87665630-87665649 | MS.gene069355:CDS | 35.0% | |
| AATTACACCACCAACAACAA+GGG | - | chr7.1:87662742-87662761 | None:intergenic | 35.0% | |
| AGTGAAGGTTGCCATTAATT+TGG | - | chr7.1:87663282-87663301 | None:intergenic | 35.0% | |
| ATATGAGGGAATACCTGTAT+TGG | + | chr7.1:87663660-87663679 | MS.gene069355:CDS | 35.0% | |
| CTTTATTCTATTCGCTCACA+AGG | - | chr7.1:87664853-87664872 | None:intergenic | 35.0% | |
| GAGGGAAATGGTAATTAGAA+TGG | - | chr7.1:87665212-87665231 | None:intergenic | 35.0% | |
| GGATAAACAATAGAACCAAG+TGG | + | chr7.1:87664634-87664653 | MS.gene069355:intron | 35.0% | |
| GTGATGTGATAGACAAAACA+AGG | + | chr7.1:87665078-87665097 | MS.gene069355:intron | 35.0% | |
| TACAGGTATTCCCTCATATT+AGG | - | chr7.1:87663659-87663678 | None:intergenic | 35.0% | |
| TTCAACTGCAGTCTTAGAAA+CGG | - | chr7.1:87663210-87663229 | None:intergenic | 35.0% | |
| TTCAATTGTCAACGAGAAAG+TGG | + | chr7.1:87665788-87665807 | MS.gene069355:CDS | 35.0% | |
| TTGATAAGTCAATTCACTGG+CGG | - | chr7.1:87664390-87664409 | None:intergenic | 35.0% | |
| ! | TCACTCATGTTTGTTGAACT+TGG | - | chr7.1:87664555-87664574 | None:intergenic | 35.0% |
| ! | TGTTGTTTAAGCAACCTTGT+AGG | + | chr7.1:87665672-87665691 | MS.gene069355:CDS | 35.0% |
| !! | CTTGGTATTGTTTTGTTCAG+TGG | + | chr7.1:87663788-87663807 | MS.gene069355:intron | 35.0% |
| !! | TCTTGGTGGGTTAACTATTT+GGG | - | chr7.1:87662859-87662878 | None:intergenic | 35.0% |
| !! | TTGCTGTTACATGCAACTTT+TGG | - | chr7.1:87663331-87663350 | None:intergenic | 35.0% |
| !!! | CACATTTTAAGGTGAGTAAG+TGG | - | chr7.1:87665441-87665460 | None:intergenic | 35.0% |
| !!! | TTCTAGGGTTTTTGACTTTG+TGG | + | chr7.1:87663587-87663606 | MS.gene069355:intron | 35.0% |
| AACAAAGAAGTCATCAACGG+TGG | + | chr7.1:87662819-87662838 | MS.gene069355:CDS | 40.0% | |
| ATATTAGGATCAGTAGGGCT+TGG | - | chr7.1:87663644-87663663 | None:intergenic | 40.0% | |
| CAATTACACCACCAACAACA+AGG | - | chr7.1:87662743-87662762 | None:intergenic | 40.0% | |
| CCCTACTGATCCTAATATGA+GGG | + | chr7.1:87663646-87663665 | MS.gene069355:CDS | 40.0% | |
| CCCTCATATTAGGATCAGTA+GGG | - | chr7.1:87663649-87663668 | None:intergenic | 40.0% | |
| CCTAATTGGGACCAATTAGA+AGG | + | chr7.1:87663534-87663553 | MS.gene069355:intron | 40.0% | |
| CCTTCTAATTGGTCCCAATT+AGG | - | chr7.1:87663537-87663556 | None:intergenic | 40.0% | |
| CGGGCTATAGGACTTAAATT+TGG | - | chr7.1:87664370-87664389 | None:intergenic | 40.0% | |
| GAAAATCCAAGACCAACAAG+AGG | + | chr7.1:87665629-87665648 | MS.gene069355:CDS | 40.0% | |
| GCTAATATAGTGTGCCTACA+AGG | - | chr7.1:87665689-87665708 | None:intergenic | 40.0% | |
| GTCTCTGAGTATAGATCAGT+TGG | + | chr7.1:87665361-87665380 | MS.gene069355:intron | 40.0% | |
| GTGGGTAAAGGTTACATACA+AGG | - | chr7.1:87663427-87663446 | None:intergenic | 40.0% | |
| TATACCAACCAGAGTGTGTA+GGG | - | chr7.1:87662910-87662929 | None:intergenic | 40.0% | |
| TATTGGATCGCTATACAGGA+TGG | + | chr7.1:87665237-87665256 | MS.gene069355:intron | 40.0% | |
| TCCCTCATATTAGGATCAGT+AGG | - | chr7.1:87663650-87663669 | None:intergenic | 40.0% | |
| TGATAAGTCAATTCACTGGC+GGG | - | chr7.1:87664389-87664408 | None:intergenic | 40.0% | |
| TTGAAATAGAGAGCAGCAAC+AGG | - | chr7.1:87665773-87665792 | None:intergenic | 40.0% | |
| TTTCCACCAACTTGAACTCT+TGG | - | chr7.1:87662876-87662895 | None:intergenic | 40.0% | |
| ! | GGGATTTTTCGTTATCCATG+TGG | - | chr7.1:87663455-87663474 | None:intergenic | 40.0% |
| !! | ATGAATTCCCTTGTTGTTGG+TGG | + | chr7.1:87662732-87662751 | MS.gene069355:CDS | 40.0% |
| !! | CTCTTGGTGGGTTAACTATT+TGG | - | chr7.1:87662860-87662879 | None:intergenic | 40.0% |
| !! | CTTGTTGTTGGTGGTGTAAT+TGG | + | chr7.1:87662741-87662760 | MS.gene069355:CDS | 40.0% |
| !!! | ATTTTTCAAGTGCCACAAGG+TGG | + | chr7.1:87663392-87663411 | MS.gene069355:intron | 40.0% |
| !!! | CTCATTTTTCAAGTGCCACA+AGG | + | chr7.1:87663389-87663408 | MS.gene069355:intron | 40.0% |
| !!! | GTTTTAGGGCCTCTTTTGTT+TGG | + | chr7.1:87663882-87663901 | MS.gene069355:intron | 40.0% |
| AACCCACCAAGAGTTCAAGT+TGG | + | chr7.1:87662867-87662886 | MS.gene069355:CDS | 45.0% | |
| AAGGTGAGTAAGTGGAGTGT+CGG | - | chr7.1:87665433-87665452 | None:intergenic | 45.0% | |
| ACACGATGAATCCCTCTTGT+TGG | - | chr7.1:87665644-87665663 | None:intergenic | 45.0% | |
| ACCAATATTCCAGCGACTAC+AGG | + | chr7.1:87665262-87665281 | MS.gene069355:CDS | 45.0% | |
| ACTTGGTCACATCTTGTGCA+TGG | - | chr7.1:87664538-87664557 | None:intergenic | 45.0% | |
| CACAGACACAAGAAACCACT+TGG | - | chr7.1:87664652-87664671 | None:intergenic | 45.0% | |
| CACCAACTTGAACTCTTGGT+GGG | - | chr7.1:87662872-87662891 | None:intergenic | 45.0% | |
| CCAATATTCCAGCGACTACA+GGG | + | chr7.1:87665263-87665282 | MS.gene069355:CDS | 45.0% | |
| GCCCTACTGATCCTAATATG+AGG | + | chr7.1:87663645-87663664 | MS.gene069355:CDS | 45.0% | |
| GTATACCAACCAGAGTGTGT+AGG | - | chr7.1:87662911-87662930 | None:intergenic | 45.0% | |
| GTTATCCATGTGGCAGTTGT+GGG | - | chr7.1:87663445-87663464 | None:intergenic | 45.0% | |
| TGTCAACGAGAAAGTGGTTC+CGG | + | chr7.1:87665794-87665813 | MS.gene069355:CDS | 45.0% | |
| TTGACTTTGTGGCACTTTGC+AGG | + | chr7.1:87663598-87663617 | MS.gene069355:intron | 45.0% | |
| ! | ATTCGCTCACAAGGTGTCTA+CGG | - | chr7.1:87664844-87664863 | None:intergenic | 45.0% |
| ! | TGAATCCCTCTTGTTGGTCT+TGG | - | chr7.1:87665638-87665657 | None:intergenic | 45.0% |
| ! | TTGAAAGGCGCATGACCTTA+TGG | - | chr7.1:87663151-87663170 | None:intergenic | 45.0% |
| !! | GGTGGGTTAACTATTTGGGA+CGG | - | chr7.1:87662855-87662874 | None:intergenic | 45.0% |
| !! | TTTCTATATAATTAAAAAAA+TGG | + | chr7.1:87664164-87664183 | MS.gene069355:intron | 5.0% |
| AATGTTGTCCCTGTAGTCGC+TGG | - | chr7.1:87665274-87665293 | None:intergenic | 50.0% | |
| AGAACCCTACACACTCTGGT+TGG | + | chr7.1:87662903-87662922 | MS.gene069355:intron | 50.0% | |
| CATGTGGCAGTTGTGGGTAA+AGG | - | chr7.1:87663439-87663458 | None:intergenic | 50.0% | |
| CCACCAACTTGAACTCTTGG+TGG | - | chr7.1:87662873-87662892 | None:intergenic | 50.0% | |
| CCCTGTAGTCGCTGGAATAT+TGG | - | chr7.1:87665266-87665285 | None:intergenic | 50.0% | |
| CGTTATCCATGTGGCAGTTG+TGG | - | chr7.1:87663446-87663465 | None:intergenic | 50.0% | |
| CTTTACCCACAACTGCCACA+TGG | + | chr7.1:87663437-87663456 | MS.gene069355:intron | 50.0% | |
| GCGACTACAGGGACAACATT+CGG | + | chr7.1:87665274-87665293 | MS.gene069355:CDS | 50.0% | |
| TTCAAGTGCCACAAGGTGGT+TGG | + | chr7.1:87663396-87663415 | MS.gene069355:intron | 50.0% | |
| TTGTGGCACTTTGCAGGTGA+TGG | + | chr7.1:87663604-87663623 | MS.gene069355:intron | 50.0% | |
| ! | AGGCTTTTCCAACCACCTTG+TGG | - | chr7.1:87663407-87663426 | None:intergenic | 50.0% |
| ! | AGGTGAGTAAGTGGAGTGTC+GGG | - | chr7.1:87665432-87665451 | None:intergenic | 50.0% |
| ! | TTCGCTCACAAGGTGTCTAC+GGG | - | chr7.1:87664843-87664862 | None:intergenic | 50.0% |
| !! | CCACCAAGAGTTCAAGTTGG+TGG | + | chr7.1:87662870-87662889 | MS.gene069355:CDS | 50.0% |
| !! | TCAATTCACTGGCGGGCTAT+AGG | - | chr7.1:87664382-87664401 | None:intergenic | 50.0% |
| AAAGTGGTTCCGGTGGAAGG+AGG | + | chr7.1:87665804-87665823 | MS.gene069355:CDS | 55.0% | |
| CAACGAGAAAGTGGTTCCGG+TGG | + | chr7.1:87665797-87665816 | MS.gene069355:CDS | 55.0% | |
| CCAGAGTGTGTAGGGTTCTC+AGG | - | chr7.1:87662902-87662921 | None:intergenic | 55.0% | |
| CCTGAGAACCCTACACACTC+TGG | + | chr7.1:87662899-87662918 | MS.gene069355:CDS | 55.0% | |
| GAGAAAGTGGTTCCGGTGGA+AGG | + | chr7.1:87665801-87665820 | MS.gene069355:CDS | 55.0% | |
| ! | CAAGGTGTCTACGGGATGGA+TGG | - | chr7.1:87664835-87664854 | None:intergenic | 55.0% |
| ! | CTCACAAGGTGTCTACGGGA+TGG | - | chr7.1:87664839-87664858 | None:intergenic | 55.0% |
| !! | CAGTAGGGCTTGGTGCATCA+GGG | - | chr7.1:87663634-87663653 | None:intergenic | 55.0% |
| !! | GATGGTTAGCCTCCTTCCAC+CGG | - | chr7.1:87665816-87665835 | None:intergenic | 55.0% |
| !! | GGTGAGTAAGTGGAGTGTCG+GGG | - | chr7.1:87665431-87665450 | None:intergenic | 55.0% |
| !! | TCAGTAGGGCTTGGTGCATC+AGG | - | chr7.1:87663635-87663654 | None:intergenic | 55.0% |
| !! | GAGTGTCGGGGTTCGAACAC+CGG | - | chr7.1:87665419-87665438 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 87662732 | 87665838 | 87662732 | ID=MS.gene069355 |
| chr7.1 | mRNA | 87662732 | 87665838 | 87662732 | ID=MS.gene069355.t1;Parent=MS.gene069355 |
| chr7.1 | exon | 87662732 | 87662920 | 87662732 | ID=MS.gene069355.t1.exon1;Parent=MS.gene069355.t1 |
| chr7.1 | CDS | 87662732 | 87662920 | 87662732 | ID=cds.MS.gene069355.t1;Parent=MS.gene069355.t1 |
| chr7.1 | exon | 87663620 | 87663681 | 87663620 | ID=MS.gene069355.t1.exon2;Parent=MS.gene069355.t1 |
| chr7.1 | CDS | 87663620 | 87663681 | 87663620 | ID=cds.MS.gene069355.t1;Parent=MS.gene069355.t1 |
| chr7.1 | exon | 87665255 | 87665295 | 87665255 | ID=MS.gene069355.t1.exon3;Parent=MS.gene069355.t1 |
| chr7.1 | CDS | 87665255 | 87665295 | 87665255 | ID=cds.MS.gene069355.t1;Parent=MS.gene069355.t1 |
| chr7.1 | exon | 87665609 | 87665838 | 87665609 | ID=MS.gene069355.t1.exon4;Parent=MS.gene069355.t1 |
| chr7.1 | CDS | 87665609 | 87665838 | 87665609 | ID=cds.MS.gene069355.t1;Parent=MS.gene069355.t1 |
| Gene Sequence |
| Protein sequence |
