Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070283.t1 | XP_003600399.2 | 77.9 | 217 | 14 | 4 | 20 | 205 | 1 | 214 | 1.70E-80 | 308.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070283.t1 | Q944B0 | 60.6 | 175 | 55 | 5 | 33 | 196 | 36 | 207 | 1.3e-47 | 191.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070283.t1 | G7IXS8 | 77.9 | 217 | 14 | 4 | 20 | 205 | 1 | 214 | 1.3e-80 | 308.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene070283 | 0.827025 | 1.96E-54 | -1.69E-46 |
| MS.gene049491 | MS.gene070283 | 0.80341 | 3.53E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene070283 | 0.817538 | 3.13E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene070283 | 0.824591 | 7.43E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene070283 | 0.843736 | 1.17E-58 | -1.69E-46 |
| MS.gene049910 | MS.gene070283 | 0.822436 | 2.37E-53 | -1.69E-46 |
| MS.gene050076 | MS.gene070283 | 0.82366 | 1.23E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene070283 | 0.848168 | 7.28E-60 | -1.69E-46 |
| MS.gene050397 | MS.gene070283 | 0.848892 | 4.59E-60 | -1.69E-46 |
| MS.gene050404 | MS.gene070283 | 0.820164 | 7.92E-53 | -1.69E-46 |
| MS.gene050406 | MS.gene070283 | 0.813825 | 2.10E-51 | -1.69E-46 |
| MS.gene050432 | MS.gene070283 | 0.801404 | 9.15E-49 | -1.69E-46 |
| MS.gene050464 | MS.gene070283 | 0.824798 | 6.64E-54 | -1.69E-46 |
| MS.gene050529 | MS.gene070283 | 0.858178 | 9.85E-63 | -1.69E-46 |
| MS.gene05101 | MS.gene070283 | 0.841807 | 3.80E-58 | -1.69E-46 |
| MS.gene051471 | MS.gene070283 | 0.848301 | 6.69E-60 | -1.69E-46 |
| MS.gene051582 | MS.gene070283 | 0.84418 | 8.87E-59 | -1.69E-46 |
| MS.gene052077 | MS.gene070283 | 0.815507 | 8.92E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene070283 | 0.829576 | 4.76E-55 | -1.69E-46 |
| MS.gene052178 | MS.gene070283 | 0.844015 | 9.82E-59 | -1.69E-46 |
| MS.gene052188 | MS.gene070283 | 0.80449 | 2.11E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene070283 | 0.848352 | 6.47E-60 | -1.69E-46 |
| MS.gene052322 | MS.gene070283 | 0.824132 | 9.53E-54 | -1.69E-46 |
| MS.gene052326 | MS.gene070283 | 0.809505 | 1.83E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene070283 | 0.823798 | 1.14E-53 | -1.69E-46 |
| MS.gene052481 | MS.gene070283 | 0.807482 | 4.95E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene070283 | 0.800505 | 1.40E-48 | -1.69E-46 |
| MS.gene053103 | MS.gene070283 | 0.830925 | 2.23E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene070283 | 0.817646 | 2.96E-52 | -1.69E-46 |
| MS.gene053557 | MS.gene070283 | 0.837616 | 4.68E-57 | -1.69E-46 |
| MS.gene053836 | MS.gene070283 | 0.839218 | 1.81E-57 | -1.69E-46 |
| MS.gene053971 | MS.gene070283 | 0.823721 | 1.19E-53 | -1.69E-46 |
| MS.gene054376 | MS.gene070283 | 0.80669 | 7.28E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene070283 | 0.846514 | 2.07E-59 | -1.69E-46 |
| MS.gene055277 | MS.gene070283 | 0.859929 | 2.94E-63 | -1.69E-46 |
| MS.gene055390 | MS.gene070283 | 0.800317 | 1.53E-48 | -1.69E-46 |
| MS.gene055422 | MS.gene070283 | 0.837387 | 5.36E-57 | -1.69E-46 |
| MS.gene055428 | MS.gene070283 | 0.87156 | 6.23E-67 | -1.69E-46 |
| MS.gene05553 | MS.gene070283 | 0.808491 | 3.02E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene070283 | 0.801269 | 9.75E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene070283 | 0.826586 | 2.50E-54 | -1.69E-46 |
| MS.gene056451 | MS.gene070283 | 0.814484 | 1.50E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene070283 | 0.838439 | 2.87E-57 | -1.69E-46 |
| MS.gene056796 | MS.gene070283 | 0.810208 | 1.29E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene070283 | 0.890931 | 6.30E-74 | -1.69E-46 |
| MS.gene05733 | MS.gene070283 | 0.812073 | 5.09E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene070283 | 0.836889 | 7.18E-57 | -1.69E-46 |
| MS.gene058082 | MS.gene070283 | 0.810465 | 1.14E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene070283 | 0.829299 | 5.56E-55 | -1.69E-46 |
| MS.gene058233 | MS.gene070283 | 0.862847 | 3.79E-64 | -1.69E-46 |
| MS.gene058276 | MS.gene070283 | 0.820395 | 7.01E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene070283 | 0.806185 | 9.30E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene070283 | 0.833674 | 4.66E-56 | -1.69E-46 |
| MS.gene058787 | MS.gene070283 | 0.815767 | 7.81E-52 | -1.69E-46 |
| MS.gene058845 | MS.gene070283 | 0.812524 | 4.06E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene070283 | 0.84086 | 6.74E-58 | -1.69E-46 |
| MS.gene059518 | MS.gene070283 | 0.810488 | 1.12E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene070283 | 0.802098 | 6.59E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene070283 | 0.826583 | 2.50E-54 | -1.69E-46 |
| MS.gene059676 | MS.gene070283 | 0.80964 | 1.71E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene070283 | 0.842896 | 1.95E-58 | -1.69E-46 |
| MS.gene059692 | MS.gene070283 | 0.852451 | 4.58E-61 | -1.69E-46 |
| MS.gene059695 | MS.gene070283 | 0.853047 | 3.09E-61 | -1.69E-46 |
| MS.gene05984 | MS.gene070283 | 0.818495 | 1.90E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene070283 | 0.866614 | 2.51E-65 | -1.69E-46 |
| MS.gene060403 | MS.gene070283 | 0.829358 | 5.38E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene070283 | 0.876584 | 1.24E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATACTCCCATTCTCAATT+TGG | 0.235456 | 3.1:-85886608 | None:intergenic |
| CAGACAAACCTTATGACTTC+TGG | 0.237773 | 3.1:-85886964 | None:intergenic |
| TTGTTTAAAACAGATGATAC+TGG | 0.286671 | 3.1:+85888641 | MS.gene070283:intron |
| TTCTCATGCTCAAGAGCCTT+TGG | 0.319830 | 3.1:+85889196 | MS.gene070283:CDS |
| ATGTTATTCTTCTCCTGCTT+TGG | 0.339105 | 3.1:+85886914 | MS.gene070283:CDS |
| AGGTTGATTGTTCAGTTTAT+CGG | 0.354737 | 3.1:+85886876 | MS.gene070283:CDS |
| AGAAGCACACGGTGGAGATT+TGG | 0.360991 | 3.1:+85887719 | MS.gene070283:CDS |
| GATTACTTTCTCCATTGAAT+TGG | 0.366396 | 3.1:-85887953 | None:intergenic |
| AGTGCTAGACTAACCTCTTC+AGG | 0.368074 | 3.1:-85888925 | None:intergenic |
| AAATCTCCACCGTGTGCTTC+TGG | 0.376876 | 3.1:-85887717 | None:intergenic |
| TCATCCAGAGGAAGTATAAC+AGG | 0.388887 | 3.1:-85887975 | None:intergenic |
| TGCTTTGGCTGCACCAATCA+TGG | 0.393966 | 3.1:+85886929 | MS.gene070283:CDS |
| AGACTAACCTCTTCAGGTAT+TGG | 0.406636 | 3.1:-85888919 | None:intergenic |
| GGTTCATTCATGTCCATGAT+TGG | 0.408026 | 3.1:-85886942 | None:intergenic |
| TAATCCTGTTATACTTCCTC+TGG | 0.433615 | 3.1:+85887971 | MS.gene070283:CDS |
| GCCAATGGAGTGAGAATTCA+AGG | 0.453898 | 3.1:+85887121 | MS.gene070283:CDS |
| ACTTCCTTCCAAATTGAGAA+TGG | 0.457588 | 3.1:+85886600 | MS.gene070283:CDS |
| GATAGAGATAATGTTCTACT+TGG | 0.462812 | 3.1:+85886559 | None:intergenic |
| GGGTTAAAGCAGGTCTTGAC+TGG | 0.462835 | 3.1:+85888663 | MS.gene070283:CDS |
| CTTCCTTCCAAATTGAGAAT+GGG | 0.464378 | 3.1:+85886601 | MS.gene070283:CDS |
| TTCAAATTAGTTGTTACTGA+AGG | 0.472369 | 3.1:+85887687 | MS.gene070283:intron |
| AGACAAACCTTATGACTTCT+GGG | 0.487362 | 3.1:-85886963 | None:intergenic |
| ACCTTGAATTCTCACTCCAT+TGG | 0.488544 | 3.1:-85887122 | None:intergenic |
| ATGATTGGTGCAGCCAAAGC+AGG | 0.489354 | 3.1:-85886927 | None:intergenic |
| TCAAATTAGTTGTTACTGAA+GGG | 0.489972 | 3.1:+85887688 | MS.gene070283:intron |
| TGAATTTCAATTGTGTATGC+AGG | 0.498237 | 3.1:+85887743 | MS.gene070283:CDS |
| GAATGAACCCAGAAGTCATA+AGG | 0.498270 | 3.1:+85886956 | MS.gene070283:CDS |
| TGTTTAAAACAGATGATACT+GGG | 0.504041 | 3.1:+85888642 | MS.gene070283:intron |
| ACTTCCTCTGGATGAGGACC+AGG | 0.515288 | 3.1:+85887983 | MS.gene070283:CDS |
| GCAGAGACGGAAGCAGCATA+TGG | 0.516780 | 3.1:-85886649 | None:intergenic |
| TAATTAAATTCAGATTGTTG+TGG | 0.529196 | 3.1:-85889254 | None:intergenic |
| GAGAAAGAAGGCTGCGTCGA+GGG | 0.529313 | 3.1:-85889178 | None:intergenic |
| GCTCTTGAGCATGAGAAAGA+AGG | 0.531879 | 3.1:-85889190 | None:intergenic |
| CTTGAAGCCAATACCTGAAG+AGG | 0.536259 | 3.1:+85888912 | MS.gene070283:CDS |
| GTCTTGACTGGCATGAGAGT+TGG | 0.540633 | 3.1:+85888675 | MS.gene070283:CDS |
| TTGACTGGCATGAGAGTTGG+TGG | 0.545256 | 3.1:+85888678 | MS.gene070283:CDS |
| CAAATTAGTTGTTACTGAAG+GGG | 0.548646 | 3.1:+85887689 | MS.gene070283:intron |
| AGTACAGTAGACCAATTCAA+TGG | 0.553972 | 3.1:+85887942 | MS.gene070283:intron |
| CTTCCGTCTCTGCTTCTCCA+AGG | 0.555396 | 3.1:+85886659 | MS.gene070283:CDS |
| TGTTATACTTCCTCTGGATG+AGG | 0.558694 | 3.1:+85887977 | MS.gene070283:CDS |
| ACTCCCATTCTCAATTTGGA+AGG | 0.560845 | 3.1:-85886604 | None:intergenic |
| GATGATACTGGGGTTAAAGC+AGG | 0.562802 | 3.1:+85888653 | MS.gene070283:intron |
| GCATTGATTCCACCTTCTGT+AGG | 0.568687 | 3.1:+85888874 | MS.gene070283:CDS |
| TGGAAGGAAGTTCACAACTC+AGG | 0.571522 | 3.1:-85886588 | None:intergenic |
| GAGAAGAATAACATAATATG+TGG | 0.575707 | 3.1:-85886905 | None:intergenic |
| GAGACGGAAGCAGCATATGG+TGG | 0.576235 | 3.1:-85886646 | None:intergenic |
| TCTACATATCCTACAGAAGG+TGG | 0.586098 | 3.1:-85888883 | None:intergenic |
| TTAGTTGTTACTGAAGGGGA+AGG | 0.589512 | 3.1:+85887693 | MS.gene070283:intron |
| AGGACTTTGAAGCTAGCCAA+TGG | 0.622370 | 3.1:+85887106 | MS.gene070283:intron |
| TCGTCTACATATCCTACAGA+AGG | 0.627789 | 3.1:-85888886 | None:intergenic |
| ATACCTTGGAGAAGCAGAGA+CGG | 0.631916 | 3.1:-85886662 | None:intergenic |
| TGAGAAAGAAGGCTGCGTCG+AGG | 0.648007 | 3.1:-85889179 | None:intergenic |
| AGTTGAACTTCAAATACCAA+AGG | 0.649057 | 3.1:-85889212 | None:intergenic |
| GTTTAAAACAGATGATACTG+GGG | 0.650883 | 3.1:+85888643 | MS.gene070283:intron |
| CTAACCTGGTCCTCATCCAG+AGG | 0.693869 | 3.1:-85887987 | None:intergenic |
| GGGGAAGGACCAGAAGCACA+CGG | 0.698408 | 3.1:+85887708 | MS.gene070283:CDS |
| GAAGGACCAGAAGCACACGG+TGG | 0.720520 | 3.1:+85887711 | MS.gene070283:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGGTTTAAACTTTAAAT+TGG | - | chr3.1:85887582-85887601 | None:intergenic | 15.0% |
| !! | TAAACAAGAAATTATTGAAA+TGG | - | chr3.1:85887863-85887882 | None:intergenic | 15.0% |
| !! | TAAGGTTTAAACTTTAAATT+GGG | - | chr3.1:85887581-85887600 | None:intergenic | 15.0% |
| !! | TACGTTTAAAAAAAAATTGA+CGG | - | chr3.1:85888975-85888994 | None:intergenic | 15.0% |
| !!! | AAAAACATGATATTGTTTTT+AGG | - | chr3.1:85886736-85886755 | None:intergenic | 15.0% |
| !!! | CTTAATTTCTTTTAATCAAA+AGG | - | chr3.1:85887618-85887637 | None:intergenic | 15.0% |
| !!! | CTTTATATTGCAAATTTTAA+CGG | + | chr3.1:85887823-85887842 | MS.gene070283:intron | 15.0% |
| !!! | TTTATATTGCAAATTTTAAC+GGG | + | chr3.1:85887824-85887843 | MS.gene070283:intron | 15.0% |
| !! | AAGGATAAATGAAATTCATA+AGG | - | chr3.1:85887599-85887618 | None:intergenic | 20.0% |
| !! | ATTTGCAATATAAAGAGATA+AGG | - | chr3.1:85887818-85887837 | None:intergenic | 20.0% |
| !! | CACAATATAAAAGTTTAAGA+AGG | - | chr3.1:85887420-85887439 | None:intergenic | 20.0% |
| !! | GGAAAATGATATTATAAACA+CGG | + | chr3.1:85888137-85888156 | MS.gene070283:intron | 20.0% |
| !! | TAAAATGTTATGTTAGTAGT+TGG | + | chr3.1:85889007-85889026 | MS.gene070283:intron | 20.0% |
| !! | TAATTAAATTCAGATTGTTG+TGG | - | chr3.1:85889257-85889276 | None:intergenic | 20.0% |
| !! | TATAAGAAGAAAAAGAACAA+TGG | - | chr3.1:85888431-85888450 | None:intergenic | 20.0% |
| !! | TTAATTTAAACATCCAAACA+AGG | - | chr3.1:85889061-85889080 | None:intergenic | 20.0% |
| !! | TTTGCAATATAAAGAGATAA+GGG | - | chr3.1:85887817-85887836 | None:intergenic | 20.0% |
| !!! | CTTCTTAAACTTTTATATTG+TGG | + | chr3.1:85887418-85887437 | MS.gene070283:intron | 20.0% |
| !!! | TGATTAATAGTCAAATTTTG+TGG | - | chr3.1:85888528-85888547 | None:intergenic | 20.0% |
| !!! | TGTATTGATGACTTTTTTTT+TGG | + | chr3.1:85889093-85889112 | MS.gene070283:intron | 20.0% |
| !!! | TTGAGTTGAAGAATATAAAA+GGG | - | chr3.1:85888571-85888590 | None:intergenic | 20.0% |
| ! | ATGAAGGAATCTATCTAATA+AGG | - | chr3.1:85888323-85888342 | None:intergenic | 25.0% |
| ! | CAAATAGAAATGCAAATTCT+TGG | + | chr3.1:85887543-85887562 | MS.gene070283:intron | 25.0% |
| ! | CGAAAAAATATTGTTCAAGA+AGG | + | chr3.1:85886856-85886875 | MS.gene070283:intron | 25.0% |
| ! | CTTATATTCTGCAAATTTGA+AGG | + | chr3.1:85888445-85888464 | MS.gene070283:intron | 25.0% |
| ! | GAGAAGAATAACATAATATG+TGG | - | chr3.1:85886908-85886927 | None:intergenic | 25.0% |
| ! | TAGAATGAAATGAATTAGAG+AGG | - | chr3.1:85886697-85886716 | None:intergenic | 25.0% |
| ! | TATTGTTTCAAATCTAGCAA+AGG | - | chr3.1:85888490-85888509 | None:intergenic | 25.0% |
| ! | TCAAATTAGTTGTTACTGAA+GGG | + | chr3.1:85887688-85887707 | MS.gene070283:intron | 25.0% |
| ! | TGCAAGTATATCATATATCA+AGG | - | chr3.1:85887339-85887358 | None:intergenic | 25.0% |
| ! | TTCAAATTAGTTGTTACTGA+AGG | + | chr3.1:85887687-85887706 | MS.gene070283:intron | 25.0% |
| ! | TTGAAAGAAATAAACTAACC+TGG | - | chr3.1:85888004-85888023 | None:intergenic | 25.0% |
| !! | AATAACTGTCTCTAATGTTT+TGG | + | chr3.1:85887898-85887917 | MS.gene070283:intron | 25.0% |
| !! | AGTTTATTTCTTTCAACTTG+TGG | + | chr3.1:85888008-85888027 | MS.gene070283:intron | 25.0% |
| !! | CTGATGATGTTTCTTATATA+TGG | + | chr3.1:85888068-85888087 | MS.gene070283:intron | 25.0% |
| !! | GTTTATTTCTTTCAACTTGT+GGG | + | chr3.1:85888009-85888028 | MS.gene070283:intron | 25.0% |
| !! | TGTTTAAAACAGATGATACT+GGG | + | chr3.1:85888642-85888661 | MS.gene070283:intron | 25.0% |
| !! | TTGTTTAAAACAGATGATAC+TGG | + | chr3.1:85888641-85888660 | MS.gene070283:intron | 25.0% |
| !! | TTTTTGTGTTTAATGCAGTT+TGG | + | chr3.1:85889155-85889174 | MS.gene070283:intron | 25.0% |
| !!! | AAATCAGTATTTTGACAATC+TGG | + | chr3.1:85888734-85888753 | MS.gene070283:intron | 25.0% |
| !!! | CTTGAGTTGAAGAATATAAA+AGG | - | chr3.1:85888572-85888591 | None:intergenic | 25.0% |
| !!! | TATTTTTATGTGAAGCATCT+AGG | + | chr3.1:85887086-85887105 | MS.gene070283:intron | 25.0% |
| AACCTTGAAATCGCATTTAT+TGG | + | chr3.1:85887224-85887243 | MS.gene070283:intron | 30.0% | |
| AAGTATAGCAATGTCTATGA+AGG | - | chr3.1:85888339-85888358 | None:intergenic | 30.0% | |
| ACTTGGATACAATCATACAA+AGG | + | chr3.1:85888945-85888964 | MS.gene070283:intron | 30.0% | |
| AGAGGAAACAATATATACCT+TGG | - | chr3.1:85886679-85886698 | None:intergenic | 30.0% | |
| AGTTGAACTTCAAATACCAA+AGG | - | chr3.1:85889215-85889234 | None:intergenic | 30.0% | |
| ATCCAATAAATGCGATTTCA+AGG | - | chr3.1:85887229-85887248 | None:intergenic | 30.0% | |
| ATTAGAGACAGTTATTGCAA+GGG | - | chr3.1:85887894-85887913 | None:intergenic | 30.0% | |
| CAAATTAGTTGTTACTGAAG+GGG | + | chr3.1:85887689-85887708 | MS.gene070283:intron | 30.0% | |
| CAGTTTAAACACACACAATA+AGG | - | chr3.1:85887295-85887314 | None:intergenic | 30.0% | |
| GATTACTTTCTCCATTGAAT+TGG | - | chr3.1:85887956-85887975 | None:intergenic | 30.0% | |
| GCATATCGCAATTTATAAGT+GGG | + | chr3.1:85888221-85888240 | MS.gene070283:intron | 30.0% | |
| TAATACTCCCATTCTCAATT+TGG | - | chr3.1:85886611-85886630 | None:intergenic | 30.0% | |
| TATTGTGTGTGTTTAAACTG+TGG | + | chr3.1:85887295-85887314 | MS.gene070283:intron | 30.0% | |
| TGAATTTCAATTGTGTATGC+AGG | + | chr3.1:85887743-85887762 | MS.gene070283:CDS | 30.0% | |
| TGCATATCGCAATTTATAAG+TGG | + | chr3.1:85888220-85888239 | MS.gene070283:intron | 30.0% | |
| ! | AGGTTGATTGTTCAGTTTAT+CGG | + | chr3.1:85886876-85886895 | MS.gene070283:CDS | 30.0% |
| ! | GTTTAAAACAGATGATACTG+GGG | + | chr3.1:85888643-85888662 | MS.gene070283:intron | 30.0% |
| ! | TAGACATTGCTATACTTTTC+AGG | + | chr3.1:85888342-85888361 | MS.gene070283:intron | 30.0% |
| ! | TGTATCTTTTGATGTCATTG+TGG | + | chr3.1:85888818-85888837 | MS.gene070283:intron | 30.0% |
| !! | TAGAACATAGTTCTGAATTG+CGG | - | chr3.1:85887463-85887482 | None:intergenic | 30.0% |
| !! | TGTCAAAATACTGATTTGTC+AGG | - | chr3.1:85888731-85888750 | None:intergenic | 30.0% |
| !!! | CAAATGGATACTTTGTTTTC+AGG | + | chr3.1:85887770-85887789 | MS.gene070283:intron | 30.0% |
| !!! | TGACTGTTTTTTTTTGTGTG+TGG | + | chr3.1:85888791-85888810 | MS.gene070283:intron | 30.0% |
| AAACACATTTCAGAGTTCTC+TGG | - | chr3.1:85888037-85888056 | None:intergenic | 35.0% | |
| AACCACAATTGCAACCAAAT+TGG | - | chr3.1:85887379-85887398 | None:intergenic | 35.0% | |
| AAGCATCTAATTGTAGTCAC+TGG | + | chr3.1:85888297-85888316 | MS.gene070283:intron | 35.0% | |
| AATTGCGGTTACACTACATT+GGG | + | chr3.1:85888171-85888190 | MS.gene070283:intron | 35.0% | |
| ACCAAATTATACAGGACTAG+TGG | - | chr3.1:85888769-85888788 | None:intergenic | 35.0% | |
| ACTCAAGTTACCATAAACTG+AGG | + | chr3.1:85888585-85888604 | MS.gene070283:intron | 35.0% | |
| ACTTCCTTCCAAATTGAGAA+TGG | + | chr3.1:85886600-85886619 | MS.gene070283:CDS | 35.0% | |
| AGACAAACCTTATGACTTCT+GGG | - | chr3.1:85886966-85886985 | None:intergenic | 35.0% | |
| AGTACAGTAGACCAATTCAA+TGG | + | chr3.1:85887942-85887961 | MS.gene070283:intron | 35.0% | |
| ATGTTATTCTTCTCCTGCTT+TGG | + | chr3.1:85886914-85886933 | MS.gene070283:CDS | 35.0% | |
| CAGTCATGACCAAATTATAC+AGG | - | chr3.1:85888777-85888796 | None:intergenic | 35.0% | |
| CATTAGAGACAGTTATTGCA+AGG | - | chr3.1:85887895-85887914 | None:intergenic | 35.0% | |
| CTTAAAACTCTCATGAATCC+AGG | + | chr3.1:85886783-85886802 | MS.gene070283:intron | 35.0% | |
| CTTCCTTCCAAATTGAGAAT+GGG | + | chr3.1:85886601-85886620 | MS.gene070283:CDS | 35.0% | |
| GTGTGTTTAAACTGTGGTTA+CGG | + | chr3.1:85887301-85887320 | MS.gene070283:intron | 35.0% | |
| TAATCCTGTTATACTTCCTC+TGG | + | chr3.1:85887971-85887990 | MS.gene070283:CDS | 35.0% | |
| TCATCAATACATAGCTGAAG+TGG | - | chr3.1:85889084-85889103 | None:intergenic | 35.0% | |
| TCCACTAGTCCTGTATAATT+TGG | + | chr3.1:85888765-85888784 | MS.gene070283:intron | 35.0% | |
| TTGTGGTTACAATGTTGTTG+CGG | + | chr3.1:85887391-85887410 | MS.gene070283:intron | 35.0% | |
| !! | ACGGTTCTAAATTGCAATTG+CGG | + | chr3.1:85888156-85888175 | MS.gene070283:intron | 35.0% |
| !! | GTGGGTTGATTATTGTAACA+TGG | + | chr3.1:85888239-85888258 | MS.gene070283:intron | 35.0% |
| !!! | GTCAGTCATTTTTGATGCAA+AGG | + | chr3.1:85887253-85887272 | MS.gene070283:intron | 35.0% |
| ACCTTGAATTCTCACTCCAT+TGG | - | chr3.1:85887125-85887144 | None:intergenic | 40.0% | |
| ACTCCCATTCTCAATTTGGA+AGG | - | chr3.1:85886607-85886626 | None:intergenic | 40.0% | |
| AGACTAACCTCTTCAGGTAT+TGG | - | chr3.1:85888922-85888941 | None:intergenic | 40.0% | |
| ATTGCGGTTACACTACATTG+GGG | + | chr3.1:85888172-85888191 | MS.gene070283:intron | 40.0% | |
| CAATTGCGGTTACACTACAT+TGG | + | chr3.1:85888170-85888189 | MS.gene070283:intron | 40.0% | |
| CAGACAAACCTTATGACTTC+TGG | - | chr3.1:85886967-85886986 | None:intergenic | 40.0% | |
| GAATGAACCCAGAAGTCATA+AGG | + | chr3.1:85886956-85886975 | MS.gene070283:CDS | 40.0% | |
| GCAGATATCTCCTCAGTTTA+TGG | - | chr3.1:85888598-85888617 | None:intergenic | 40.0% | |
| GGTTCATTCATGTCCATGAT+TGG | - | chr3.1:85886945-85886964 | None:intergenic | 40.0% | |
| TATCACAAATCACAGTGCAC+TGG | - | chr3.1:85887056-85887075 | None:intergenic | 40.0% | |
| TCGTCTACATATCCTACAGA+AGG | - | chr3.1:85888889-85888908 | None:intergenic | 40.0% | |
| TCTACATATCCTACAGAAGG+TGG | - | chr3.1:85888886-85888905 | None:intergenic | 40.0% | |
| TGTTATACTTCCTCTGGATG+AGG | + | chr3.1:85887977-85887996 | MS.gene070283:CDS | 40.0% | |
| TTAGTTGTTACTGAAGGGGA+AGG | + | chr3.1:85887693-85887712 | MS.gene070283:intron | 40.0% | |
| ! | TCATCCAGAGGAAGTATAAC+AGG | - | chr3.1:85887978-85887997 | None:intergenic | 40.0% |
| AAGGGCGACTGAAGAATACT+AGG | - | chr3.1:85888553-85888572 | None:intergenic | 45.0% | |
| AGTGCTAGACTAACCTCTTC+AGG | - | chr3.1:85888928-85888947 | None:intergenic | 45.0% | |
| ATACCTTGGAGAAGCAGAGA+CGG | - | chr3.1:85886665-85886684 | None:intergenic | 45.0% | |
| CACTACATTGGGGTTAGATG+CGG | + | chr3.1:85888182-85888201 | MS.gene070283:intron | 45.0% | |
| CTTGAAGCCAATACCTGAAG+AGG | + | chr3.1:85888912-85888931 | MS.gene070283:CDS | 45.0% | |
| CTTGCAAAACGCAGCATATG+TGG | + | chr3.1:85887353-85887372 | MS.gene070283:intron | 45.0% | |
| GATATGCAACAACAACCGCA+AGG | - | chr3.1:85888208-85888227 | None:intergenic | 45.0% | |
| GATGATACTGGGGTTAAAGC+AGG | + | chr3.1:85888653-85888672 | MS.gene070283:intron | 45.0% | |
| GATGTCATTGTGGTCACTCT+TGG | + | chr3.1:85888828-85888847 | MS.gene070283:intron | 45.0% | |
| GCCAATGGAGTGAGAATTCA+AGG | + | chr3.1:85887121-85887140 | MS.gene070283:CDS | 45.0% | |
| GCTCTTGAGCATGAGAAAGA+AGG | - | chr3.1:85889193-85889212 | None:intergenic | 45.0% | |
| GCTTTACGCTCAACCTTGTT+TGG | + | chr3.1:85889045-85889064 | MS.gene070283:intron | 45.0% | |
| GGCCAATTTGGTTGCAATTG+TGG | + | chr3.1:85887374-85887393 | MS.gene070283:intron | 45.0% | |
| TCACTCTTGGCTTCACTTGT+AGG | + | chr3.1:85888841-85888860 | MS.gene070283:intron | 45.0% | |
| TGGAAGGAAGTTCACAACTC+AGG | - | chr3.1:85886591-85886610 | None:intergenic | 45.0% | |
| TTCTCATGCTCAAGAGCCTT+TGG | + | chr3.1:85889196-85889215 | MS.gene070283:CDS | 45.0% | |
| !! | AGGACTTTGAAGCTAGCCAA+TGG | + | chr3.1:85887106-85887125 | MS.gene070283:intron | 45.0% |
| !! | GAAGAGGTTAGTCTAGCACT+TGG | + | chr3.1:85888928-85888947 | MS.gene070283:intron | 45.0% |
| !! | GCATTGATTCCACCTTCTGT+AGG | + | chr3.1:85888874-85888893 | MS.gene070283:CDS | 45.0% |
| !!! | AAATTTTTTTATTAAGTAAT+TGG | + | chr3.1:85888116-85888135 | MS.gene070283:intron | 5.0% |
| AAATCTCCACCGTGTGCTTC+TGG | - | chr3.1:85887720-85887739 | None:intergenic | 50.0% | |
| ATGATTGGTGCAGCCAAAGC+AGG | - | chr3.1:85886930-85886949 | None:intergenic | 50.0% | |
| CGCAGCATATGTGGCCAATT+TGG | + | chr3.1:85887362-85887381 | MS.gene070283:intron | 50.0% | |
| GGGTTAAAGCAGGTCTTGAC+TGG | + | chr3.1:85888663-85888682 | MS.gene070283:CDS | 50.0% | |
| GTCTTGACTGGCATGAGAGT+TGG | + | chr3.1:85888675-85888694 | MS.gene070283:CDS | 50.0% | |
| TCATGAATCCAGGTGCACTG+AGG | + | chr3.1:85886793-85886812 | MS.gene070283:intron | 50.0% | |
| TGCTTTGGCTGCACCAATCA+TGG | + | chr3.1:85886929-85886948 | MS.gene070283:CDS | 50.0% | |
| TGTGTATGCAGGCGTGCAAA+TGG | + | chr3.1:85887754-85887773 | MS.gene070283:intron | 50.0% | |
| TTGACTGGCATGAGAGTTGG+TGG | + | chr3.1:85888678-85888697 | MS.gene070283:CDS | 50.0% | |
| ! | AGAAGCACACGGTGGAGATT+TGG | + | chr3.1:85887719-85887738 | MS.gene070283:CDS | 50.0% |
| ACTTCCTCTGGATGAGGACC+AGG | + | chr3.1:85887983-85888002 | MS.gene070283:CDS | 55.0% | |
| CTAACCTGGTCCTCATCCAG+AGG | - | chr3.1:85887990-85888009 | None:intergenic | 55.0% | |
| CTTCCGTCTCTGCTTCTCCA+AGG | + | chr3.1:85886659-85886678 | MS.gene070283:CDS | 55.0% | |
| CTTTGCATCCTCAGTGCACC+TGG | - | chr3.1:85886804-85886823 | None:intergenic | 55.0% | |
| GAGAAAGAAGGCTGCGTCGA+GGG | - | chr3.1:85889181-85889200 | None:intergenic | 55.0% | |
| GAGACGGAAGCAGCATATGG+TGG | - | chr3.1:85886649-85886668 | None:intergenic | 55.0% | |
| GCAGAGACGGAAGCAGCATA+TGG | - | chr3.1:85886652-85886671 | None:intergenic | 55.0% | |
| TGAGAAAGAAGGCTGCGTCG+AGG | - | chr3.1:85889182-85889201 | None:intergenic | 55.0% | |
| TGGGGTTAGATGCGGCCTTG+CGG | + | chr3.1:85888190-85888209 | MS.gene070283:intron | 60.0% | |
| ! | GAAGGACCAGAAGCACACGG+TGG | + | chr3.1:85887711-85887730 | MS.gene070283:CDS | 60.0% |
| ! | GGGGAAGGACCAGAAGCACA+CGG | + | chr3.1:85887708-85887727 | MS.gene070283:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 85886560 | 85889277 | 85886560 | ID=MS.gene070283 |
| chr3.1 | mRNA | 85886560 | 85889277 | 85886560 | ID=MS.gene070283.t1;Parent=MS.gene070283 |
| chr3.1 | exon | 85886560 | 85886680 | 85886560 | ID=MS.gene070283.t1.exon1;Parent=MS.gene070283.t1 |
| chr3.1 | CDS | 85886560 | 85886680 | 85886560 | ID=cds.MS.gene070283.t1;Parent=MS.gene070283.t1 |
| chr3.1 | exon | 85886875 | 85886985 | 85886875 | ID=MS.gene070283.t1.exon2;Parent=MS.gene070283.t1 |
| chr3.1 | CDS | 85886875 | 85886985 | 85886875 | ID=cds.MS.gene070283.t1;Parent=MS.gene070283.t1 |
| chr3.1 | exon | 85887108 | 85887142 | 85887108 | ID=MS.gene070283.t1.exon3;Parent=MS.gene070283.t1 |
| chr3.1 | CDS | 85887108 | 85887142 | 85887108 | ID=cds.MS.gene070283.t1;Parent=MS.gene070283.t1 |
| chr3.1 | exon | 85887697 | 85887766 | 85887697 | ID=MS.gene070283.t1.exon4;Parent=MS.gene070283.t1 |
| chr3.1 | CDS | 85887697 | 85887766 | 85887697 | ID=cds.MS.gene070283.t1;Parent=MS.gene070283.t1 |
| chr3.1 | exon | 85887944 | 85888004 | 85887944 | ID=MS.gene070283.t1.exon5;Parent=MS.gene070283.t1 |
| chr3.1 | CDS | 85887944 | 85888004 | 85887944 | ID=cds.MS.gene070283.t1;Parent=MS.gene070283.t1 |
| chr3.1 | exon | 85888654 | 85888699 | 85888654 | ID=MS.gene070283.t1.exon6;Parent=MS.gene070283.t1 |
| chr3.1 | CDS | 85888654 | 85888699 | 85888654 | ID=cds.MS.gene070283.t1;Parent=MS.gene070283.t1 |
| chr3.1 | exon | 85888863 | 85888933 | 85888863 | ID=MS.gene070283.t1.exon7;Parent=MS.gene070283.t1 |
| chr3.1 | CDS | 85888863 | 85888933 | 85888863 | ID=cds.MS.gene070283.t1;Parent=MS.gene070283.t1 |
| chr3.1 | exon | 85889173 | 85889277 | 85889173 | ID=MS.gene070283.t1.exon8;Parent=MS.gene070283.t1 |
| chr3.1 | CDS | 85889173 | 85889277 | 85889173 | ID=cds.MS.gene070283.t1;Parent=MS.gene070283.t1 |
| Gene Sequence |
| Protein sequence |
