Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072409.t1 | XP_013469523.1 | 95.3 | 212 | 10 | 0 | 1 | 212 | 1 | 212 | 5.60E-106 | 393.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072409.t1 | P51412 | 48.4 | 223 | 94 | 5 | 4 | 209 | 2 | 220 | 3.4e-43 | 176.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072409.t1 | A0A072VPH5 | 95.3 | 212 | 10 | 0 | 1 | 212 | 1 | 212 | 4.0e-106 | 393.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049173 | MS.gene072409 | 0.803942 | 2.74E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene072409 | 0.804235 | 2.38E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene072409 | 0.820869 | 5.46E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene072409 | 0.812199 | 4.78E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene072409 | 0.810808 | 9.59E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene072409 | 0.819497 | 1.13E-52 | -1.69E-46 |
| MS.gene049615 | MS.gene072409 | 0.838476 | 2.81E-57 | -1.69E-46 |
| MS.gene050163 | MS.gene072409 | 0.845568 | 3.74E-59 | -1.69E-46 |
| MS.gene050165 | MS.gene072409 | 0.831954 | 1.25E-55 | -1.69E-46 |
| MS.gene050507 | MS.gene072409 | 0.814297 | 1.66E-51 | -1.69E-46 |
| MS.gene050538 | MS.gene072409 | 0.825123 | 5.56E-54 | -1.69E-46 |
| MS.gene050767 | MS.gene072409 | 0.811065 | 8.44E-51 | -1.69E-46 |
| MS.gene050770 | MS.gene072409 | 0.811754 | 5.98E-51 | -1.69E-46 |
| MS.gene050781 | MS.gene072409 | 0.818389 | 2.01E-52 | -1.69E-46 |
| MS.gene050783 | MS.gene072409 | 0.80701 | 6.23E-50 | -1.69E-46 |
| MS.gene05100 | MS.gene072409 | 0.851821 | 6.91E-61 | -1.69E-46 |
| MS.gene051666 | MS.gene072409 | 0.843034 | 1.80E-58 | -1.69E-46 |
| MS.gene052379 | MS.gene072409 | 0.805786 | 1.13E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene072409 | 0.829605 | 4.69E-55 | -1.69E-46 |
| MS.gene053107 | MS.gene072409 | 0.801163 | 1.02E-48 | -1.69E-46 |
| MS.gene053213 | MS.gene072409 | 0.828573 | 8.34E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene072409 | 0.82276 | 1.99E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene072409 | 0.830488 | 2.85E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene072409 | 0.821231 | 4.51E-53 | -1.69E-46 |
| MS.gene054600 | MS.gene072409 | 0.803251 | 3.81E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene072409 | 0.844217 | 8.67E-59 | -1.69E-46 |
| MS.gene054802 | MS.gene072409 | 0.804009 | 2.65E-49 | -1.69E-46 |
| MS.gene054803 | MS.gene072409 | 0.802206 | 6.26E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene072409 | 0.80581 | 1.12E-49 | -1.69E-46 |
| MS.gene055212 | MS.gene072409 | 0.81313 | 2.99E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene072409 | 0.801848 | 7.42E-49 | -1.69E-46 |
| MS.gene055397 | MS.gene072409 | 0.82523 | 5.25E-54 | -1.69E-46 |
| MS.gene055499 | MS.gene072409 | 0.83907 | 1.97E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene072409 | 0.810116 | 1.35E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene072409 | 0.80931 | 2.02E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene072409 | 0.825837 | 3.77E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene072409 | 0.850429 | 1.71E-60 | -1.69E-46 |
| MS.gene058019 | MS.gene072409 | 0.853192 | 2.81E-61 | -1.69E-46 |
| MS.gene058293 | MS.gene072409 | 0.815623 | 8.41E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene072409 | 0.826505 | 2.61E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene072409 | 0.828079 | 1.10E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene072409 | 0.823725 | 1.19E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene072409 | 0.81848 | 1.92E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene072409 | 0.811019 | 8.63E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene072409 | 0.847986 | 8.17E-60 | -1.69E-46 |
| MS.gene060193 | MS.gene072409 | 0.812746 | 3.63E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene072409 | 0.830127 | 3.50E-55 | -1.69E-46 |
| MS.gene060835 | MS.gene072409 | 0.803929 | 2.76E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene072409 | 0.812963 | 3.25E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene072409 | 0.82328 | 1.51E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene072409 | 0.807207 | 5.66E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene072409 | 0.848664 | 5.31E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072409.t1 | MTR_1g096460 | 95.283 | 212 | 10 | 0 | 1 | 212 | 1 | 212 | 9.71e-134 | 374 |
| MS.gene072409.t1 | MTR_7g111750 | 50.476 | 105 | 52 | 0 | 93 | 197 | 161 | 265 | 1.18e-21 | 90.5 |
| MS.gene072409.t1 | MTR_7g111750 | 50.476 | 105 | 52 | 0 | 93 | 197 | 171 | 275 | 1.67e-21 | 90.1 |
| MS.gene072409.t1 | MTR_2g058400 | 50.476 | 105 | 52 | 0 | 93 | 197 | 239 | 343 | 8.83e-21 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072409.t1 | AT1G35680 | 50.000 | 226 | 90 | 7 | 1 | 209 | 1 | 220 | 1.64e-53 | 171 |
| MS.gene072409.t1 | AT4G30930 | 46.429 | 112 | 59 | 1 | 92 | 202 | 140 | 251 | 5.76e-22 | 90.9 |
Find 56 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTATGGACGATATAAATT+TGG | 0.192854 | 1.1:-69496385 | MS.gene072409:CDS |
| CATCCGGATAAATAGCATTA+TGG | 0.235579 | 1.1:-69496430 | MS.gene072409:CDS |
| ACAGCAGATTCAGTGGATTT+AGG | 0.249346 | 1.1:+69498322 | None:intergenic |
| TTTATCCGGATGCGTGTATT+TGG | 0.270233 | 1.1:+69496441 | None:intergenic |
| ATATCGTCCATAGTAACTTT+TGG | 0.287859 | 1.1:+69496393 | None:intergenic |
| AAGCACTACCGTAGAACTAT+TGG | 0.389507 | 1.1:-69496741 | MS.gene072409:CDS |
| AAATTGTTCAGTCTCCTTCA+TGG | 0.399185 | 1.1:-69498252 | MS.gene072409:CDS |
| ATCCGGATAAATAGCATTAT+GGG | 0.402240 | 1.1:-69496429 | MS.gene072409:CDS |
| GGCCAGGGTGAACAATATAT+TGG | 0.416675 | 1.1:+69497595 | None:intergenic |
| GGACTACCCAAAAGTTACTA+TGG | 0.431208 | 1.1:-69496400 | MS.gene072409:CDS |
| ACCACAGCATTTGTTACTAC+TGG | 0.436337 | 1.1:+69496922 | None:intergenic |
| GATTCAGTGGATTTAGGAAC+GGG | 0.439429 | 1.1:+69498328 | None:intergenic |
| TACTGGTTTGCCAATGTAGC+AGG | 0.447272 | 1.1:+69496939 | None:intergenic |
| AGCCCATAATGCTATTTATC+CGG | 0.454993 | 1.1:+69496427 | None:intergenic |
| ATTGTAGATCGCCCTGCATA+AGG | 0.455809 | 1.1:-69496986 | MS.gene072409:intron |
| TCAGTCTCCTTCATGGGAGA+AGG | 0.458893 | 1.1:-69498245 | MS.gene072409:CDS |
| TGAACAACAAGCCAGCGGCC+AGG | 0.470564 | 1.1:+69497579 | None:intergenic |
| ACAGATACATCCTGCTACAT+TGG | 0.471048 | 1.1:-69496949 | MS.gene072409:CDS |
| CTTGTTGTTCAGAGGCTCAA+AGG | 0.473982 | 1.1:-69497567 | MS.gene072409:CDS |
| ACTTGAGACTCAGACTCAAC+AGG | 0.480236 | 1.1:+69498295 | None:intergenic |
| AATTGTTCAGTCTCCTTCAT+GGG | 0.484994 | 1.1:-69498251 | MS.gene072409:CDS |
| GAACAACAAGCCAGCGGCCA+GGG | 0.488250 | 1.1:+69497580 | None:intergenic |
| TTGAGGCTTTGTTGAACAAT+GGG | 0.491609 | 1.1:+69498441 | None:intergenic |
| ATATGCGACAGTGGAAGATC+AGG | 0.499742 | 1.1:-69496899 | MS.gene072409:intron |
| CAGTCTCCTTCATGGGAGAA+GGG | 0.511001 | 1.1:-69498244 | MS.gene072409:CDS |
| CAACCAGTAAAACCTTATGC+AGG | 0.515174 | 1.1:+69496974 | None:intergenic |
| GCCGCTGGCTTGTTGTTCAG+AGG | 0.515615 | 1.1:-69497575 | MS.gene072409:CDS |
| TGATGAGAAATAGAGAATTG+AGG | 0.517104 | 1.1:+69498424 | None:intergenic |
| ATATTGTTCACCCTGGCCGC+TGG | 0.519617 | 1.1:-69497590 | MS.gene072409:CDS |
| TGGAAAGAGAGGTTGTGAGA+AGG | 0.523157 | 1.1:+69498382 | None:intergenic |
| AAATAGCATTATGGGCTATG+AGG | 0.523959 | 1.1:-69496421 | MS.gene072409:CDS |
| TTATTGTATTCAAATACAAA+AGG | 0.529558 | 1.1:-69496767 | MS.gene072409:CDS |
| AGGCAAGCGTTGTGAGAAAG+TGG | 0.533199 | 1.1:+69498357 | None:intergenic |
| AAAAGACCCTTCTCCCATGA+AGG | 0.536139 | 1.1:+69498238 | None:intergenic |
| TGTGAAAGAAGAACAGAGAG+TGG | 0.542220 | 1.1:+69498465 | None:intergenic |
| GTCTGTGTCCAATAGTTCTA+CGG | 0.543286 | 1.1:+69496733 | None:intergenic |
| ATTGAGGCTTTGTTGAACAA+TGG | 0.545857 | 1.1:+69498440 | None:intergenic |
| GACAGCCAAATACACGCATC+CGG | 0.549802 | 1.1:-69496446 | MS.gene072409:intron |
| TTGTGAGAAGGAACACGAGA+AGG | 0.551095 | 1.1:+69498394 | None:intergenic |
| TAGAACTATTGGACACAGAC+AGG | 0.559177 | 1.1:-69496730 | MS.gene072409:intron |
| AGATTCAGTGGATTTAGGAA+CGG | 0.565702 | 1.1:+69498327 | None:intergenic |
| AGCGTTGTGAGAAAGTGGAT+TGG | 0.591056 | 1.1:+69498362 | None:intergenic |
| AGGTGCAACAGCAGATTCAG+TGG | 0.593123 | 1.1:+69498315 | None:intergenic |
| CGCCAATATATTGTTCACCC+TGG | 0.594986 | 1.1:-69497597 | MS.gene072409:CDS |
| TGAGTCTGAGTCTCAAGTGT+CGG | 0.608217 | 1.1:-69498290 | MS.gene072409:CDS |
| TGTGAGAAGGAACACGAGAA+GGG | 0.611777 | 1.1:+69498395 | None:intergenic |
| ACCAGTAGTAACAAATGCTG+TGG | 0.613380 | 1.1:-69496923 | MS.gene072409:CDS |
| AGAAAGTGGATTGGAAAGAG+AGG | 0.617691 | 1.1:+69498371 | None:intergenic |
| AACCAGTAAAACCTTATGCA+GGG | 0.620022 | 1.1:+69496975 | None:intergenic |
| GTATACCTTGTCGTTAACGT+TGG | 0.621234 | 1.1:+69497542 | None:intergenic |
| GAAGGAACACGAGAAGGGAA+AGG | 0.624230 | 1.1:+69498400 | None:intergenic |
| AGGAGACTGAACAATTTGAG+AGG | 0.639275 | 1.1:+69498258 | None:intergenic |
| AGGTGCCAACGTTAACGACA+AGG | 0.654570 | 1.1:-69497547 | MS.gene072409:intron |
| GATTTAGGAACGGGTAACAG+AGG | 0.658715 | 1.1:+69498337 | None:intergenic |
| GCCTCTGAACAACAAGCCAG+CGG | 0.664752 | 1.1:+69497574 | None:intergenic |
| TGCTGTGGTATATGCGACAG+TGG | 0.682736 | 1.1:-69496908 | MS.gene072409:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCTATAAATATAATATAAA+AGG | - | chr1.1:69497634-69497653 | MS.gene072409:intron | 10.0% |
| !! | CCTATAAATATAATATAAAA+GGG | - | chr1.1:69497635-69497654 | MS.gene072409:intron | 10.0% |
| !!! | AAAAAGTTTTGATAAATAAT+TGG | + | chr1.1:69498193-69498212 | None:intergenic | 10.0% |
| !!! | ATACAATATATTTAAAACTA+TGG | - | chr1.1:69497477-69497496 | MS.gene072409:intron | 10.0% |
| !! | AAAGTATATTATAAGAAACT+AGG | - | chr1.1:69497667-69497686 | MS.gene072409:intron | 15.0% |
| !! | ATATAAAATAGATAAAACCA+TGG | + | chr1.1:69496826-69496845 | None:intergenic | 15.0% |
| !! | TATAATATAAAAGGGTTTAA+TGG | - | chr1.1:69497643-69497662 | MS.gene072409:intron | 15.0% |
| !! | TTATTGTATTCAAATACAAA+AGG | - | chr1.1:69498100-69498119 | MS.gene072409:intron | 15.0% |
| !!! | AATATATTTAAAACTATGGT+TGG | - | chr1.1:69497481-69497500 | MS.gene072409:intron | 15.0% |
| !!! | CCCTTTTATATTATATTTAT+AGG | + | chr1.1:69497638-69497657 | None:intergenic | 15.0% |
| !!! | TGTACATTAATTTTAACTAT+TGG | - | chr1.1:69497857-69497876 | MS.gene072409:intron | 15.0% |
| !! | AAAAATATGCAAACTCAATT+GGG | + | chr1.1:69496793-69496812 | None:intergenic | 20.0% |
| !! | AACATTCATAAAAAATGACA+TGG | + | chr1.1:69498359-69498378 | None:intergenic | 20.0% |
| !! | ATGAATGAAATTCAAATCAT+TGG | - | chr1.1:69497728-69497747 | MS.gene072409:intron | 20.0% |
| !! | GCTAATCATTACTTAATAAA+TGG | + | chr1.1:69497451-69497470 | None:intergenic | 20.0% |
| !! | TTGTTTGTAATTGTATTGTT+AGG | - | chr1.1:69497119-69497138 | MS.gene072409:intron | 20.0% |
| !! | TTTGAACAATTCAAACAAAA+GGG | + | chr1.1:69496715-69496734 | None:intergenic | 20.0% |
| !!! | AGGTATTTGTTTATTGTTTT+GGG | - | chr1.1:69497170-69497189 | MS.gene072409:intron | 20.0% |
| !!! | CATTTATCTGAAATTATTTG+TGG | - | chr1.1:69496853-69496872 | MS.gene072409:intron | 20.0% |
| !!! | TAGGTATTTGTTTATTGTTT+TGG | - | chr1.1:69497169-69497188 | MS.gene072409:intron | 20.0% |
| !!! | TTTTGAACAATTCAAACAAA+AGG | + | chr1.1:69496716-69496735 | None:intergenic | 20.0% |
| ! | AACAGTAAATGTTCAGATAA+TGG | + | chr1.1:69497812-69497831 | None:intergenic | 25.0% |
| ! | AAGTGGCAAATTATAATCAT+TGG | + | chr1.1:69497762-69497781 | None:intergenic | 25.0% |
| ! | CAAAAATATGCAAACTCAAT+TGG | + | chr1.1:69496794-69496813 | None:intergenic | 25.0% |
| ! | CATTCATCATATATACAACA+TGG | + | chr1.1:69498312-69498331 | None:intergenic | 25.0% |
| ! | GAAATAATGAGTTTAACGAA+TGG | + | chr1.1:69497374-69497393 | None:intergenic | 25.0% |
| ! | GATAGACTTTACTTATGTTT+CGG | + | chr1.1:69496971-69496990 | None:intergenic | 25.0% |
| ! | GCATTAAAACAAAATGGTTA+AGG | + | chr1.1:69498062-69498081 | None:intergenic | 25.0% |
| ! | TAAAACAAAATGGTTAAGGT+AGG | + | chr1.1:69498058-69498077 | None:intergenic | 25.0% |
| ! | TACTATGGACGATATAAATT+TGG | - | chr1.1:69498482-69498501 | MS.gene072409:CDS | 25.0% |
| ! | TAGGAATGGTTAAGTAAAAT+GGG | - | chr1.1:69496899-69496918 | MS.gene072409:intron | 25.0% |
| ! | TCAAATCAAACATCAAATTC+TGG | + | chr1.1:69498389-69498408 | None:intergenic | 25.0% |
| ! | TGTTAATCTAGATTGTTCTA+TGG | - | chr1.1:69496757-69496776 | MS.gene072409:CDS | 25.0% |
| ! | TTAGGAATGGTTAAGTAAAA+TGG | - | chr1.1:69496898-69496917 | MS.gene072409:intron | 25.0% |
| !! | ATAAATGGTAGCAATTTTAG+AGG | + | chr1.1:69497436-69497455 | None:intergenic | 25.0% |
| !! | ATATAGGTTGAAACAATCAT+TGG | + | chr1.1:69496993-69497012 | None:intergenic | 25.0% |
| !! | CAATTGAGTTTGCATATTTT+TGG | - | chr1.1:69496792-69496811 | MS.gene072409:intron | 25.0% |
| !! | CTATCATGATGTCAATTTTA+CGG | + | chr1.1:69497547-69497566 | None:intergenic | 25.0% |
| !!! | AACCATTTTGTTTTAATGCA+GGG | - | chr1.1:69498063-69498082 | MS.gene072409:intron | 25.0% |
| !!! | CAACCTATATTTTTGAACTT+GGG | - | chr1.1:69497003-69497022 | MS.gene072409:intron | 25.0% |
| !!! | CTTTTTTTTAATGTTGAGTG+TGG | - | chr1.1:69496680-69496699 | MS.gene072409:intron | 25.0% |
| !!! | GGTATTTGTTTATTGTTTTG+GGG | - | chr1.1:69497171-69497190 | MS.gene072409:intron | 25.0% |
| !!! | TAACCATTTTGTTTTAATGC+AGG | - | chr1.1:69498062-69498081 | MS.gene072409:intron | 25.0% |
| !!! | TCAACCTATATTTTTGAACT+TGG | - | chr1.1:69497002-69497021 | MS.gene072409:intron | 25.0% |
| !!! | TTGTGTTGTTTTGTTTAGAT+TGG | - | chr1.1:69497243-69497262 | MS.gene072409:intron | 25.0% |
| !!! | TTTTAGCTTTTTTTCCTAAC+AGG | + | chr1.1:69498022-69498041 | None:intergenic | 25.0% |
| AACCCTGCATTAAAACAAAA+TGG | + | chr1.1:69498068-69498087 | None:intergenic | 30.0% | |
| AATCGTTTCAAAGAGAAAAG+TGG | + | chr1.1:69497779-69497798 | None:intergenic | 30.0% | |
| AGTATTGCACATTCAAGATT+AGG | - | chr1.1:69496880-69496899 | MS.gene072409:intron | 30.0% | |
| ATCCGGATAAATAGCATTAT+GGG | - | chr1.1:69498438-69498457 | MS.gene072409:CDS | 30.0% | |
| ATTGGATTGCACAAAGTAAA+AGG | + | chr1.1:69498175-69498194 | None:intergenic | 30.0% | |
| CATTCATTTCTCACATCATA+TGG | + | chr1.1:69497711-69497730 | None:intergenic | 30.0% | |
| GAACCCAAGTTCAAAAATAT+AGG | + | chr1.1:69497009-69497028 | None:intergenic | 30.0% | |
| TATGGTCAAAATACCTCTTT+AGG | + | chr1.1:69497693-69497712 | None:intergenic | 30.0% | |
| TCAATTATAGACGAATCACT+CGG | + | chr1.1:69497034-69497053 | None:intergenic | 30.0% | |
| TGAAAGGAGCTTAGAAATAT+GGG | - | chr1.1:69498283-69498302 | MS.gene072409:CDS | 30.0% | |
| TGATGAGAAATAGAGAATTG+AGG | + | chr1.1:69496446-69496465 | None:intergenic | 30.0% | |
| TTTAATGTTGAGTGTGGATT+GGG | - | chr1.1:69496686-69496705 | MS.gene072409:intron | 30.0% | |
| ! | ATATCGTCCATAGTAACTTT+TGG | + | chr1.1:69498477-69498496 | None:intergenic | 30.0% |
| ! | TATCGTCCATAGTAACTTTT+GGG | + | chr1.1:69498476-69498495 | None:intergenic | 30.0% |
| ! | TTTTAATGTTGAGTGTGGAT+TGG | - | chr1.1:69496685-69496704 | MS.gene072409:intron | 30.0% |
| !! | TTGTAATGGTGAGTTTTTAG+TGG | - | chr1.1:69496657-69496676 | MS.gene072409:intron | 30.0% |
| !! | TTTAAAACTATGGTTGGCTT+AGG | - | chr1.1:69497487-69497506 | MS.gene072409:intron | 30.0% |
| !!! | AATTTTAGAGGAAGTGCTTA+AGG | + | chr1.1:69497424-69497443 | None:intergenic | 30.0% |
| !!! | TGTTGTTTTGTTTAGATTGG+TGG | - | chr1.1:69497246-69497265 | MS.gene072409:intron | 30.0% |
| AAATTGTTCAGTCTCCTTCA+TGG | - | chr1.1:69496615-69496634 | MS.gene072409:intron | 35.0% | |
| AACCAGTAAAACCTTATGCA+GGG | + | chr1.1:69497895-69497914 | None:intergenic | 35.0% | |
| AATTGTTCAGTCTCCTTCAT+GGG | - | chr1.1:69496616-69496635 | MS.gene072409:intron | 35.0% | |
| ACTACTAATGACCTGAACTA+TGG | - | chr1.1:69497605-69497624 | MS.gene072409:CDS | 35.0% | |
| ATAAGAAACTAGGCCTAAAG+AGG | - | chr1.1:69497677-69497696 | MS.gene072409:intron | 35.0% | |
| CAATCACGTAGCTAGTAAAA+GGG | - | chr1.1:69497074-69497093 | MS.gene072409:intron | 35.0% | |
| CAATTATAGACGAATCACTC+GGG | + | chr1.1:69497033-69497052 | None:intergenic | 35.0% | |
| CATCCGGATAAATAGCATTA+TGG | - | chr1.1:69498437-69498456 | MS.gene072409:CDS | 35.0% | |
| CTACTAATGACCTGAACTAT+GGG | - | chr1.1:69497606-69497625 | MS.gene072409:CDS | 35.0% | |
| CTGAAAGGAGCTTAGAAATA+TGG | - | chr1.1:69498282-69498301 | MS.gene072409:CDS | 35.0% | |
| TATGATGAATGTTTGCCTGT+AGG | - | chr1.1:69498321-69498340 | MS.gene072409:CDS | 35.0% | |
| TCAATCACGTAGCTAGTAAA+AGG | - | chr1.1:69497073-69497092 | MS.gene072409:intron | 35.0% | |
| TGCACATTCAAGATTAGGAA+TGG | - | chr1.1:69496885-69496904 | MS.gene072409:intron | 35.0% | |
| TGCTTAAGGAGCAAAGAAAA+TGG | + | chr1.1:69497410-69497429 | None:intergenic | 35.0% | |
| TTACCCTTAGACTTTCTGAA+AGG | - | chr1.1:69498267-69498286 | MS.gene072409:CDS | 35.0% | |
| ! | AAATAGCATTATGGGCTATG+AGG | - | chr1.1:69498446-69498465 | MS.gene072409:CDS | 35.0% |
| ! | AGATTCAGTGGATTTAGGAA+CGG | + | chr1.1:69496543-69496562 | None:intergenic | 35.0% |
| ! | AGCCCATAATGCTATTTATC+CGG | + | chr1.1:69498443-69498462 | None:intergenic | 35.0% |
| ! | CAAAAGTTACATGCTTTGAG+TGG | - | chr1.1:69496731-69496750 | MS.gene072409:CDS | 35.0% |
| ! | CAATTTTACGGAACCAGAAA+GGG | + | chr1.1:69497535-69497554 | None:intergenic | 35.0% |
| ! | TCAATTTTACGGAACCAGAA+AGG | + | chr1.1:69497536-69497555 | None:intergenic | 35.0% |
| !! | AGCTAGTAAAAGGGTTAGTT+TGG | - | chr1.1:69497083-69497102 | MS.gene072409:intron | 35.0% |
| !! | AGTAAAAGGGTTAGTTTGGA+TGG | - | chr1.1:69497087-69497106 | MS.gene072409:intron | 35.0% |
| !! | AGTTTGTTGGGTTGGTAAAT+AGG | - | chr1.1:69497150-69497169 | MS.gene072409:intron | 35.0% |
| !! | ATTGAGGCTTTGTTGAACAA+TGG | + | chr1.1:69496430-69496449 | None:intergenic | 35.0% |
| !! | TTGAGGCTTTGTTGAACAAT+GGG | + | chr1.1:69496429-69496448 | None:intergenic | 35.0% |
| !!! | TATTTTTGGCTCTATCACCA+TGG | - | chr1.1:69496806-69496825 | MS.gene072409:intron | 35.0% |
| AAGCACTACCGTAGAACTAT+TGG | - | chr1.1:69498126-69498145 | MS.gene072409:intron | 40.0% | |
| AATGACCTGAACTATGGGTT+AGG | - | chr1.1:69497611-69497630 | MS.gene072409:intron | 40.0% | |
| ACAGATACATCCTGCTACAT+TGG | - | chr1.1:69497918-69497937 | MS.gene072409:intron | 40.0% | |
| ACCAGTAGTAACAAATGCTG+TGG | - | chr1.1:69497944-69497963 | MS.gene072409:intron | 40.0% | |
| AGCTCCTTTCAGAAAGTCTA+AGG | + | chr1.1:69498274-69498293 | None:intergenic | 40.0% | |
| AGGAGACTGAACAATTTGAG+AGG | + | chr1.1:69496612-69496631 | None:intergenic | 40.0% | |
| CAACCAGTAAAACCTTATGC+AGG | + | chr1.1:69497896-69497915 | None:intergenic | 40.0% | |
| GAAATGTCTATGTGTGGCTT+GGG | - | chr1.1:69498219-69498238 | MS.gene072409:intron | 40.0% | |
| GCGATTGAAATGTCTATGTG+TGG | - | chr1.1:69498213-69498232 | MS.gene072409:intron | 40.0% | |
| GCTCCTTTCAGAAAGTCTAA+GGG | + | chr1.1:69498273-69498292 | None:intergenic | 40.0% | |
| GCTTGGGAACTAATTCTTTG+GGG | - | chr1.1:69498235-69498254 | MS.gene072409:CDS | 40.0% | |
| GGACTACCCAAAAGTTACTA+TGG | - | chr1.1:69498467-69498486 | MS.gene072409:CDS | 40.0% | |
| GGCTTGGGAACTAATTCTTT+GGG | - | chr1.1:69498234-69498253 | MS.gene072409:CDS | 40.0% | |
| GTATACCTTGTCGTTAACGT+TGG | + | chr1.1:69497328-69497347 | None:intergenic | 40.0% | |
| TAGAACTATTGGACACAGAC+AGG | - | chr1.1:69498137-69498156 | MS.gene072409:intron | 40.0% | |
| TGAAATGTCTATGTGTGGCT+TGG | - | chr1.1:69498218-69498237 | MS.gene072409:intron | 40.0% | |
| TGTGAAAGAAGAACAGAGAG+TGG | + | chr1.1:69496405-69496424 | None:intergenic | 40.0% | |
| TTTATCCGGATGCGTGTATT+TGG | + | chr1.1:69498429-69498448 | None:intergenic | 40.0% | |
| ! | ACAGCAGATTCAGTGGATTT+AGG | + | chr1.1:69496548-69496567 | None:intergenic | 40.0% |
| ! | ACCACAGCATTTGTTACTAC+TGG | + | chr1.1:69497948-69497967 | None:intergenic | 40.0% |
| ! | CTGCATAAGGTTTTACTGGT+TGG | - | chr1.1:69497894-69497913 | MS.gene072409:intron | 40.0% |
| ! | GATTCAGTGGATTTAGGAAC+GGG | + | chr1.1:69496542-69496561 | None:intergenic | 40.0% |
| ! | GTCTGTGTCCAATAGTTCTA+CGG | + | chr1.1:69498137-69498156 | None:intergenic | 40.0% |
| ! | TAGGCTACTTCGAGTTTGTT+GGG | - | chr1.1:69497138-69497157 | MS.gene072409:intron | 40.0% |
| ! | TGGCTTGGGAACTAATTCTT+TGG | - | chr1.1:69498233-69498252 | MS.gene072409:CDS | 40.0% |
| ! | TTAGGCTACTTCGAGTTTGT+TGG | - | chr1.1:69497137-69497156 | MS.gene072409:intron | 40.0% |
| !! | AGAAAGTGGATTGGAAAGAG+AGG | + | chr1.1:69496499-69496518 | None:intergenic | 40.0% |
| !! | TCTGCTTTTGTTCTCCTGTT+AGG | - | chr1.1:69498005-69498024 | MS.gene072409:intron | 40.0% |
| !!! | GGGTCTTTTTGCTGTTGTAA+TGG | - | chr1.1:69496643-69496662 | MS.gene072409:intron | 40.0% |
| AAAAGACCCTTCTCCCATGA+AGG | + | chr1.1:69496632-69496651 | None:intergenic | 45.0% | |
| ACTTGAGACTCAGACTCAAC+AGG | + | chr1.1:69496575-69496594 | None:intergenic | 45.0% | |
| AGCGTTGTGAGAAAGTGGAT+TGG | + | chr1.1:69496508-69496527 | None:intergenic | 45.0% | |
| ATATGCGACAGTGGAAGATC+AGG | - | chr1.1:69497968-69497987 | MS.gene072409:intron | 45.0% | |
| ATTGTAGATCGCCCTGCATA+AGG | - | chr1.1:69497881-69497900 | MS.gene072409:intron | 45.0% | |
| CGCCAATATATTGTTCACCC+TGG | - | chr1.1:69497270-69497289 | MS.gene072409:intron | 45.0% | |
| GATTTAGGAACGGGTAACAG+AGG | + | chr1.1:69496533-69496552 | None:intergenic | 45.0% | |
| GCTACGTGATTGAGCTTAAG+TGG | + | chr1.1:69497066-69497085 | None:intergenic | 45.0% | |
| GGCCAGGGTGAACAATATAT+TGG | + | chr1.1:69497275-69497294 | None:intergenic | 45.0% | |
| TAGGTCCTAACCCATAGTTC+AGG | + | chr1.1:69497619-69497638 | None:intergenic | 45.0% | |
| TATGTTTCGGCCAAACTCCA+GGG | + | chr1.1:69496958-69496977 | None:intergenic | 45.0% | |
| TGAGTCTGAGTCTCAAGTGT+CGG | - | chr1.1:69496577-69496596 | MS.gene072409:intron | 45.0% | |
| TGGAAAGAGAGGTTGTGAGA+AGG | + | chr1.1:69496488-69496507 | None:intergenic | 45.0% | |
| TGTGAGAAGGAACACGAGAA+GGG | + | chr1.1:69496475-69496494 | None:intergenic | 45.0% | |
| TTATGTTTCGGCCAAACTCC+AGG | + | chr1.1:69496959-69496978 | None:intergenic | 45.0% | |
| TTGTGAGAAGGAACACGAGA+AGG | + | chr1.1:69496476-69496495 | None:intergenic | 45.0% | |
| !! | CTACTTCGAGTTTGTTGGGT+TGG | - | chr1.1:69497142-69497161 | MS.gene072409:intron | 45.0% |
| !! | CTTGTTGTTCAGAGGCTCAA+AGG | - | chr1.1:69497300-69497319 | MS.gene072409:intron | 45.0% |
| !! | TACTGGTTTGCCAATGTAGC+AGG | + | chr1.1:69497931-69497950 | None:intergenic | 45.0% |
| AGGTGCAACAGCAGATTCAG+TGG | + | chr1.1:69496555-69496574 | None:intergenic | 50.0% | |
| AGGTGCCAACGTTAACGACA+AGG | - | chr1.1:69497320-69497339 | MS.gene072409:intron | 50.0% | |
| CAGTCTCCTTCATGGGAGAA+GGG | - | chr1.1:69496623-69496642 | MS.gene072409:intron | 50.0% | |
| GAAGGAACACGAGAAGGGAA+AGG | + | chr1.1:69496470-69496489 | None:intergenic | 50.0% | |
| GACAGCCAAATACACGCATC+CGG | - | chr1.1:69498421-69498440 | MS.gene072409:CDS | 50.0% | |
| TCAGTCTCCTTCATGGGAGA+AGG | - | chr1.1:69496622-69496641 | MS.gene072409:intron | 50.0% | |
| TGCTGTGGTATATGCGACAG+TGG | - | chr1.1:69497959-69497978 | MS.gene072409:intron | 50.0% | |
| TGTTTGCCTGTAGGCACATG+AGG | - | chr1.1:69498330-69498349 | MS.gene072409:CDS | 50.0% | |
| ! | AGGCAAGCGTTGTGAGAAAG+TGG | + | chr1.1:69496513-69496532 | None:intergenic | 50.0% |
| ! | CGCCCTGCATAAGGTTTTAC+TGG | - | chr1.1:69497890-69497909 | MS.gene072409:intron | 50.0% |
| AGTGCTTCCTGCTCCCTTTC+TGG | - | chr1.1:69497519-69497538 | MS.gene072409:intron | 55.0% | |
| ATATTGTTCACCCTGGCCGC+TGG | - | chr1.1:69497277-69497296 | MS.gene072409:intron | 55.0% | |
| GCCTCTGAACAACAAGCCAG+CGG | + | chr1.1:69497296-69497315 | None:intergenic | 55.0% | |
| TACGGAACCAGAAAGGGAGC+AGG | + | chr1.1:69497529-69497548 | None:intergenic | 55.0% | |
| TGGAAGCCTCATGTGCCTAC+AGG | + | chr1.1:69498339-69498358 | None:intergenic | 55.0% | |
| TTGTCTTATCCCTCCGACCC+TGG | - | chr1.1:69496938-69496957 | MS.gene072409:CDS | 55.0% | |
| TTTCGGCCAAACTCCAGGGT+CGG | + | chr1.1:69496954-69496973 | None:intergenic | 55.0% | |
| ATCCCTCCGACCCTGGAGTT+TGG | - | chr1.1:69496945-69496964 | MS.gene072409:CDS | 60.0% | |
| GAACAACAAGCCAGCGGCCA+GGG | + | chr1.1:69497290-69497309 | None:intergenic | 60.0% | |
| TGAACAACAAGCCAGCGGCC+AGG | + | chr1.1:69497291-69497310 | None:intergenic | 60.0% | |
| !! | GCCGCTGGCTTGTTGTTCAG+AGG | - | chr1.1:69497292-69497311 | MS.gene072409:intron | 60.0% |
| GGCCAAACTCCAGGGTCGGA+GGG | + | chr1.1:69496950-69496969 | None:intergenic | 65.0% | |
| CGGCCAAACTCCAGGGTCGG+AGG | + | chr1.1:69496951-69496970 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 69496374 | 69498515 | 69496374 | ID=MS.gene072409 |
| chr1.1 | mRNA | 69496374 | 69498515 | 69496374 | ID=MS.gene072409.t1;Parent=MS.gene072409 |
| chr1.1 | exon | 69498225 | 69498515 | 69498225 | ID=MS.gene072409.t1.exon1;Parent=MS.gene072409.t1 |
| chr1.1 | CDS | 69498225 | 69498515 | 69498225 | ID=cds.MS.gene072409.t1;Parent=MS.gene072409.t1 |
| chr1.1 | exon | 69497548 | 69497628 | 69497548 | ID=MS.gene072409.t1.exon2;Parent=MS.gene072409.t1 |
| chr1.1 | CDS | 69497548 | 69497628 | 69497548 | ID=cds.MS.gene072409.t1;Parent=MS.gene072409.t1 |
| chr1.1 | exon | 69496900 | 69497001 | 69496900 | ID=MS.gene072409.t1.exon3;Parent=MS.gene072409.t1 |
| chr1.1 | CDS | 69496900 | 69497001 | 69496900 | ID=cds.MS.gene072409.t1;Parent=MS.gene072409.t1 |
| chr1.1 | exon | 69496731 | 69496805 | 69496731 | ID=MS.gene072409.t1.exon4;Parent=MS.gene072409.t1 |
| chr1.1 | CDS | 69496731 | 69496805 | 69496731 | ID=cds.MS.gene072409.t1;Parent=MS.gene072409.t1 |
| chr1.1 | exon | 69496374 | 69496463 | 69496374 | ID=MS.gene072409.t1.exon5;Parent=MS.gene072409.t1 |
| chr1.1 | CDS | 69496374 | 69496463 | 69496374 | ID=cds.MS.gene072409.t1;Parent=MS.gene072409.t1 |
| Gene Sequence |
| Protein sequence |
