AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073042

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073042.t1 MTR_3g109300 99.289 422 3 0 1 422 250 671 0.0 847
MS.gene073042.t1 MTR_1g009010 93.079 419 29 0 3 421 2 420 0.0 768
MS.gene073042.t1 MTR_7g087530 24.403 377 265 8 14 379 33 400 4.69e-22 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073042.t1 AT1G29150 86.747 415 54 1 8 422 6 419 0.0 706
MS.gene073042.t1 AT1G29150 86.747 415 54 1 8 422 6 419 0.0 706
MS.gene073042.t1 AT2G26990 21.892 370 269 8 21 379 40 400 1.47e-16 81.6

Find 96 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCTTTGACTCTTCTTTC+TGG 0.076579 3.3:+89353808 MS.gene073042:CDS
GAAGATGTCTCAGATGATTT+TGG 0.221126 3.3:+89354461 MS.gene073042:CDS
TACACAACAACATATATTTC+AGG 0.264578 3.3:-89354122 None:intergenic
CTTAGGAATCAAGGAGAAAA+AGG 0.267105 3.3:-89353599 None:intergenic
AAGCTTTGACTCTTCTTTCT+GGG 0.325672 3.3:+89353809 MS.gene073042:CDS
GTCCCTGTATGATACCCTTC+TGG 0.327271 3.3:+89354344 MS.gene073042:CDS
CAAGAAGTTTGCTGGGACAT+TGG 0.347751 3.3:+89354485 MS.gene073042:CDS
GGGTGGAATTATTTCTTCTA+AGG 0.348906 3.3:+89354173 MS.gene073042:CDS
ACCTTCTCAGGCAAGAGAAC+AGG 0.350066 3.3:+89353539 MS.gene073042:CDS
TCTTTCATACGCAGAGCTTC+TGG 0.357829 3.3:-89353493 None:intergenic
GAAATGGTCTCTAAAGTTGC+AGG 0.361989 3.3:-89354564 None:intergenic
TGGTTGACAGTCTTTATGTT+AGG 0.381996 3.3:+89354601 MS.gene073042:CDS
CACTTTCCCAACATTGGAAA+TGG 0.391471 3.3:-89354580 None:intergenic
TATTCCACTCTGAAGATCTA+TGG 0.400897 3.3:-89354001 None:intergenic
CTGGGTTGGTCAAAGAGGTT+AGG 0.401504 3.3:+89353827 MS.gene073042:CDS
TTCCGCTCAACGTGAACAAT+TGG 0.403038 3.3:-89354441 None:intergenic
TAGAGACCATTTCCAATGTT+GGG 0.407846 3.3:+89354574 MS.gene073042:CDS
GAAATGTGTCTGTGAACAAT+TGG 0.411462 3.3:-89354321 None:intergenic
TTTGACTCTTCTTTCTGGGT+TGG 0.413470 3.3:+89353813 MS.gene073042:CDS
CAGGACTACAAGGCACAGTT+GGG 0.423474 3.3:+89354291 MS.gene073042:CDS
TTCTGGAGCAGAATCTTTGT+AGG 0.427259 3.3:+89354361 MS.gene073042:CDS
GGGTATATTGCATCAGTCTT+GGG 0.434505 3.3:-89354543 None:intergenic
CATTTCCAATGTTGGGAAAG+TGG 0.438184 3.3:+89354581 MS.gene073042:CDS
CCCTGTTCTCTTGCCTGAGA+AGG 0.446003 3.3:-89353540 None:intergenic
GAGAGCTCATGCCATGATCT+TGG 0.450538 3.3:-89354628 None:intergenic
CAAATCTTACTGACCTTCTC+AGG 0.450662 3.3:+89353527 MS.gene073042:CDS
AGGGTATATTGCATCAGTCT+TGG 0.452702 3.3:-89354544 None:intergenic
TTCAGGCTGAAAATAGCCTT+AGG 0.454754 3.3:-89354105 None:intergenic
GGAATTATTTCTTCTAAGGC+AGG 0.456178 3.3:+89354177 MS.gene073042:CDS
TCTATGGCCCCTTGTTGAGC+AGG 0.465189 3.3:-89353985 None:intergenic
GATTTCACTGTGTAAAGAAA+TGG 0.466235 3.3:+89353693 MS.gene073042:CDS
TGTTAGGTCTGCCAAGATCA+TGG 0.470208 3.3:+89354617 MS.gene073042:CDS
GGATTCAATTGCTCAGGCAT+TGG 0.471759 3.3:+89353405 MS.gene073042:CDS
ATCAAGTACACGATAAAGAA+TGG 0.473844 3.3:-89353455 None:intergenic
GCTCCAGAAGGGTATCATAC+AGG 0.474854 3.3:-89354347 None:intergenic
AAGGCAGGATTGCAATATGT+TGG 0.477736 3.3:+89354192 MS.gene073042:CDS
GCTTTCATCGCATCCAAGTC+AGG 0.487211 3.3:-89354216 None:intergenic
TTAGAGACCATTTCCAATGT+TGG 0.488579 3.3:+89354573 MS.gene073042:CDS
GTCAACCACTTTCCCAACAT+TGG 0.489301 3.3:-89354586 None:intergenic
GCAGGACTACAAGGCACAGT+TGG 0.489808 3.3:+89354290 MS.gene073042:CDS
TTCAATTGCTCAGGCATTGG+AGG 0.497862 3.3:+89353408 MS.gene073042:CDS
AGGCAGGATTGCAATATGTT+GGG 0.501095 3.3:+89354193 MS.gene073042:CDS
AACTGCTTTGCAGGACTACA+AGG 0.501162 3.3:+89354281 MS.gene073042:CDS
CAATGCTCTTGAAGACCCTA+AGG 0.511010 3.3:+89354089 MS.gene073042:CDS
GCAATATGTTGGGCCTGACT+TGG 0.511624 3.3:+89354203 MS.gene073042:CDS
CCTTCTCAGGCAAGAGAACA+GGG 0.514248 3.3:+89353540 MS.gene073042:CDS
TCAGGCTGAAAATAGCCTTA+GGG 0.519784 3.3:-89354104 None:intergenic
GCAATCTCAACTCTTGAGAA+TGG 0.520686 3.3:-89354393 None:intergenic
GCAATTGAATCCGTTGTGGC+AGG 0.520844 3.3:-89353394 None:intergenic
ATCGAATATAACGAGGCATC+CGG 0.522107 3.3:-89354517 None:intergenic
GACTCAGTTGCTAAAATACC+AGG 0.527380 3.3:+89353655 MS.gene073042:CDS
CACAACGGATTCAATTGCTC+AGG 0.533092 3.3:+89353399 MS.gene073042:CDS
AAGAGCATTGAAAGACTCAA+AGG 0.538169 3.3:-89354076 None:intergenic
AGCTCTGCGTATGAAAGAGC+AGG 0.542904 3.3:+89353498 MS.gene073042:CDS
CAGCTGTTCTAGCAGCCGTG+AGG 0.548019 3.3:-89353942 None:intergenic
AGAGCTTCTGGTGAAGAAGA+TGG 0.548989 3.3:-89353481 None:intergenic
TATGTTGTTGTGTAAGATCA+TGG 0.550906 3.3:+89354131 MS.gene073042:CDS
AATACTTCATGCTGAGGAGA+AGG 0.551692 3.3:+89354020 MS.gene073042:CDS
TTCCAATTGTTCACGTTGAG+CGG 0.552851 3.3:+89354439 MS.gene073042:CDS
TCTTTCTGGGTTGGTCAAAG+AGG 0.554089 3.3:+89353822 MS.gene073042:CDS
AGCTGTTCTAGCAGCCGTGA+GGG 0.554968 3.3:-89353941 None:intergenic
TTTGCTGGGACATTGGATCA+AGG 0.555668 3.3:+89354492 MS.gene073042:CDS
TATGTGCCTCCTGCTCAACA+AGG 0.559971 3.3:+89353976 MS.gene073042:CDS
CTCCAGAAGGGTATCATACA+GGG 0.564510 3.3:-89354346 None:intergenic
ATCTGTAGATCAGATGTCCC+TGG 0.569702 3.3:-89353673 None:intergenic
AAATGTGTCTGTGAACAATT+GGG 0.569773 3.3:-89354320 None:intergenic
TACAAAGATTCTGCTCCAGA+AGG 0.569886 3.3:-89354359 None:intergenic
AGAATGGATATCGCATCAGA+AGG 0.570735 3.3:-89353439 None:intergenic
GAATGGATATCGCATCAGAA+GGG 0.585707 3.3:-89353438 None:intergenic
GGGACATTGGATCAAGGTGC+CGG 0.586404 3.3:+89354498 MS.gene073042:CDS
GCAGCCTTCTCACTTCATTG+AGG 0.586407 3.3:+89353575 MS.gene073042:CDS
CTCATTAAGAAACCTTCCAA+AGG 0.587775 3.3:+89353909 MS.gene073042:CDS
CAGGCAAGAGAACAGGGGAG+AGG 0.594061 3.3:+89353546 MS.gene073042:CDS
ATCTTATCTTCCTGCCACAA+CGG 0.596364 3.3:+89353384 MS.gene073042:CDS
AAAGGCAAAAGCTGCCCTCA+CGG 0.605293 3.3:+89353927 MS.gene073042:CDS
AAGGTCAGTAAGATTTGTGA+TGG 0.606087 3.3:-89353521 None:intergenic
AGGGCCTCAATGAAGTGAGA+AGG 0.611750 3.3:-89353579 None:intergenic
ATGTGCCTCCTGCTCAACAA+GGG 0.612734 3.3:+89353977 MS.gene073042:CDS
ATGGCCCCTTGTTGAGCAGG+AGG 0.618931 3.3:-89353982 None:intergenic
ACAAAGATTCTGCTCCAGAA+GGG 0.620348 3.3:-89354358 None:intergenic
AAAACTGCAAAGATTGTAAG+GGG 0.631797 3.3:+89353625 MS.gene073042:CDS
GAGTGGAATACTTCATGCTG+AGG 0.636952 3.3:+89354014 MS.gene073042:CDS
AAATGGTCTCTAAAGTTGCA+GGG 0.639902 3.3:-89354563 None:intergenic
TGTGCCTCCTGCTCAACAAG+GGG 0.645095 3.3:+89353978 MS.gene073042:CDS
AGGAAGATAAGATGTAGACA+TGG 0.676910 3.3:-89353374 None:intergenic
AGGACTACAAGGCACAGTTG+GGG 0.686447 3.3:+89354292 MS.gene073042:CDS
GGACTACAAGGCACAGTTGG+GGG 0.689123 3.3:+89354293 MS.gene073042:CDS
CTGAGCAATTGAATCCGTTG+TGG 0.699339 3.3:-89353398 None:intergenic
TGTGTAAAGAAATGGTGCAG+TGG 0.703348 3.3:+89353701 MS.gene073042:CDS
AATCAAGCTGATGACGTGGG+TGG 0.707192 3.3:+89354156 MS.gene073042:CDS
CTTCTCAGGCAAGAGAACAG+GGG 0.711755 3.3:+89353541 MS.gene073042:CDS
ACTCAGTTGCTAAAATACCA+GGG 0.713806 3.3:+89353656 MS.gene073042:CDS
GGTGAATCAAGCTGATGACG+TGG 0.718460 3.3:+89354152 MS.gene073042:CDS
GGGGCCATAGATCTTCAGAG+TGG 0.726182 3.3:+89353997 MS.gene073042:CDS
GTGAATCAAGCTGATGACGT+GGG 0.744573 3.3:+89354153 MS.gene073042:CDS
TGGGATCATCGAATATAACG+AGG 0.757360 3.3:-89354524 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAAACTGCAAAGATTGTAA+GGG + chr3.3:89353624-89353643 MS.gene073042:CDS 25.0%
! TACACAACAACATATATTTC+AGG - chr3.3:89354125-89354144 None:intergenic 25.0%
AAAACTGCAAAGATTGTAAG+GGG + chr3.3:89353625-89353644 MS.gene073042:CDS 30.0%
AAATGTGTCTGTGAACAATT+GGG - chr3.3:89354323-89354342 None:intergenic 30.0%
AAGCAGTTTCGAAAAACTTA+AGG - chr3.3:89354269-89354288 None:intergenic 30.0%
AGCAGTTTCGAAAAACTTAA+GGG - chr3.3:89354268-89354287 None:intergenic 30.0%
ATCAAGTACACGATAAAGAA+TGG - chr3.3:89353458-89353477 None:intergenic 30.0%
CAAAAACTGCAAAGATTGTA+AGG + chr3.3:89353623-89353642 MS.gene073042:CDS 30.0%
GATTTCACTGTGTAAAGAAA+TGG + chr3.3:89353693-89353712 MS.gene073042:CDS 30.0%
TATGTTGTTGTGTAAGATCA+TGG + chr3.3:89354131-89354150 MS.gene073042:CDS 30.0%
TTAGGAATCAAGGAGAAAAA+GGG - chr3.3:89353601-89353620 None:intergenic 30.0%
AAGGTCAGTAAGATTTGTGA+TGG - chr3.3:89353524-89353543 None:intergenic 35.0%
ACTCAGTTGCTAAAATACCA+GGG + chr3.3:89353656-89353675 MS.gene073042:CDS 35.0%
CTCATTAAGAAACCTTCCAA+AGG + chr3.3:89353909-89353928 MS.gene073042:CDS 35.0%
CTTAGGAATCAAGGAGAAAA+AGG - chr3.3:89353602-89353621 None:intergenic 35.0%
GAAATGTGTCTGTGAACAAT+TGG - chr3.3:89354324-89354343 None:intergenic 35.0%
TAGAGACCATTTCCAATGTT+GGG + chr3.3:89354574-89354593 MS.gene073042:CDS 35.0%
TGGTTGACAGTCTTTATGTT+AGG + chr3.3:89354601-89354620 MS.gene073042:CDS 35.0%
TTAGAGACCATTTCCAATGT+TGG + chr3.3:89354573-89354592 MS.gene073042:CDS 35.0%
! AAGCTTTGACTCTTCTTTCT+GGG + chr3.3:89353809-89353828 MS.gene073042:CDS 35.0%
! AGTTTTTGCCTTAGGAATCA+AGG - chr3.3:89353611-89353630 None:intergenic 35.0%
! ATCTTTGCAGTTTTTGCCTT+AGG - chr3.3:89353619-89353638 None:intergenic 35.0%
! ATTTTGGACAAGAAGTTTGC+TGG + chr3.3:89354477-89354496 MS.gene073042:CDS 35.0%
! CTTTTTCTCCTTGATTCCTA+AGG + chr3.3:89353600-89353619 MS.gene073042:CDS 35.0%
! GAAGATGTCTCAGATGATTT+TGG + chr3.3:89354461-89354480 MS.gene073042:CDS 35.0%
! GGGTGGAATTATTTCTTCTA+AGG + chr3.3:89354173-89354192 MS.gene073042:CDS 35.0%
! TATTCCACTCTGAAGATCTA+TGG - chr3.3:89354004-89354023 None:intergenic 35.0%
!! AAATGGTCTCTAAAGTTGCA+GGG - chr3.3:89354566-89354585 None:intergenic 35.0%
!! AAGAGCATTGAAAGACTCAA+AGG - chr3.3:89354079-89354098 None:intergenic 35.0%
!! GGAATTATTTCTTCTAAGGC+AGG + chr3.3:89354177-89354196 MS.gene073042:CDS 35.0%
!! TTTTGGACAAGAAGTTTGCT+GGG + chr3.3:89354478-89354497 MS.gene073042:CDS 35.0%
AAGGCAGGATTGCAATATGT+TGG + chr3.3:89354192-89354211 MS.gene073042:CDS 40.0%
AATACTTCATGCTGAGGAGA+AGG + chr3.3:89354020-89354039 MS.gene073042:CDS 40.0%
ACAAAGATTCTGCTCCAGAA+GGG - chr3.3:89354361-89354380 None:intergenic 40.0%
AGAATGGATATCGCATCAGA+AGG - chr3.3:89353442-89353461 None:intergenic 40.0%
AGGCAGGATTGCAATATGTT+GGG + chr3.3:89354193-89354212 MS.gene073042:CDS 40.0%
AGGGTATATTGCATCAGTCT+TGG - chr3.3:89354547-89354566 None:intergenic 40.0%
ATCTTATCTTCCTGCCACAA+CGG + chr3.3:89353384-89353403 MS.gene073042:CDS 40.0%
CAAATCTTACTGACCTTCTC+AGG + chr3.3:89353527-89353546 MS.gene073042:CDS 40.0%
CACTTTCCCAACATTGGAAA+TGG - chr3.3:89354583-89354602 None:intergenic 40.0%
CATTTCCAATGTTGGGAAAG+TGG + chr3.3:89354581-89354600 MS.gene073042:CDS 40.0%
GAATGGATATCGCATCAGAA+GGG - chr3.3:89353441-89353460 None:intergenic 40.0%
GACTCAGTTGCTAAAATACC+AGG + chr3.3:89353655-89353674 MS.gene073042:CDS 40.0%
GCAATCTCAACTCTTGAGAA+TGG - chr3.3:89354396-89354415 None:intergenic 40.0%
GGGTATATTGCATCAGTCTT+GGG - chr3.3:89354546-89354565 None:intergenic 40.0%
TACAAAGATTCTGCTCCAGA+AGG - chr3.3:89354362-89354381 None:intergenic 40.0%
TGGGATCATCGAATATAACG+AGG - chr3.3:89354527-89354546 None:intergenic 40.0%
TGTGTAAAGAAATGGTGCAG+TGG + chr3.3:89353701-89353720 MS.gene073042:CDS 40.0%
TTCAGGCTGAAAATAGCCTT+AGG - chr3.3:89354108-89354127 None:intergenic 40.0%
TTCCAATTGTTCACGTTGAG+CGG + chr3.3:89354439-89354458 MS.gene073042:CDS 40.0%
TTTGACTCTTCTTTCTGGGT+TGG + chr3.3:89353813-89353832 MS.gene073042:CDS 40.0%
! AGCGCTTTTGATGGAAACTA+AGG + chr3.3:89353777-89353796 MS.gene073042:CDS 40.0%
! ATCGAATATAACGAGGCATC+CGG - chr3.3:89354520-89354539 None:intergenic 40.0%
! GAAGCTTTGACTCTTCTTTC+TGG + chr3.3:89353808-89353827 MS.gene073042:CDS 40.0%
! TCAGGCTGAAAATAGCCTTA+GGG - chr3.3:89354107-89354126 None:intergenic 40.0%
!! CTGAAAAGCGTACTTTTCTG+AGG + chr3.3:89353731-89353750 MS.gene073042:CDS 40.0%
!! GAAATGGTCTCTAAAGTTGC+AGG - chr3.3:89354567-89354586 None:intergenic 40.0%
!! GTTTTTCGAAACTGCTTTGC+AGG + chr3.3:89354272-89354291 MS.gene073042:CDS 40.0%
!! TTCTGGAGCAGAATCTTTGT+AGG + chr3.3:89354361-89354380 MS.gene073042:CDS 40.0%
!!! TTTTCTGAGGCAACGAATTG+AGG + chr3.3:89353744-89353763 MS.gene073042:CDS 40.0%
AACTGCTTTGCAGGACTACA+AGG + chr3.3:89354281-89354300 MS.gene073042:CDS 45.0%
AGAGCTTCTGGTGAAGAAGA+TGG - chr3.3:89353484-89353503 None:intergenic 45.0%
ATCTGTAGATCAGATGTCCC+TGG - chr3.3:89353676-89353695 None:intergenic 45.0%
CAATGCTCTTGAAGACCCTA+AGG + chr3.3:89354089-89354108 MS.gene073042:CDS 45.0%
CTGAGCAATTGAATCCGTTG+TGG - chr3.3:89353401-89353420 None:intergenic 45.0%
GAGTGGAATACTTCATGCTG+AGG + chr3.3:89354014-89354033 MS.gene073042:CDS 45.0%
GGATTCAATTGCTCAGGCAT+TGG + chr3.3:89353405-89353424 MS.gene073042:CDS 45.0%
GTCAACCACTTTCCCAACAT+TGG - chr3.3:89354589-89354608 None:intergenic 45.0%
TCTTTCATACGCAGAGCTTC+TGG - chr3.3:89353496-89353515 None:intergenic 45.0%
TGTTAGGTCTGCCAAGATCA+TGG + chr3.3:89354617-89354636 MS.gene073042:CDS 45.0%
TTCCGCTCAACGTGAACAAT+TGG - chr3.3:89354444-89354463 None:intergenic 45.0%
TTTGCTGGGACATTGGATCA+AGG + chr3.3:89354492-89354511 MS.gene073042:CDS 45.0%
! AAGACTTGCAGCGCTTTTGA+TGG + chr3.3:89353768-89353787 MS.gene073042:CDS 45.0%
! CACAACGGATTCAATTGCTC+AGG + chr3.3:89353399-89353418 MS.gene073042:CDS 45.0%
! GTGAATCAAGCTGATGACGT+GGG + chr3.3:89354153-89354172 MS.gene073042:CDS 45.0%
!! CAAGAAGTTTGCTGGGACAT+TGG + chr3.3:89354485-89354504 MS.gene073042:CDS 45.0%
!! CTCCAGAAGGGTATCATACA+GGG - chr3.3:89354349-89354368 None:intergenic 45.0%
!! TCTTTCTGGGTTGGTCAAAG+AGG + chr3.3:89353822-89353841 MS.gene073042:CDS 45.0%
!! TTCAATTGCTCAGGCATTGG+AGG + chr3.3:89353408-89353427 MS.gene073042:CDS 45.0%
AAAGGCAAAAGCTGCCCTCA+CGG + chr3.3:89353927-89353946 MS.gene073042:CDS 50.0%
ACCTTCTCAGGCAAGAGAAC+AGG + chr3.3:89353539-89353558 MS.gene073042:CDS 50.0%
AGCTCTGCGTATGAAAGAGC+AGG + chr3.3:89353498-89353517 MS.gene073042:CDS 50.0%
AGGACTACAAGGCACAGTTG+GGG + chr3.3:89354292-89354311 MS.gene073042:CDS 50.0%
AGGGCCTCAATGAAGTGAGA+AGG - chr3.3:89353582-89353601 None:intergenic 50.0%
ATGTGCCTCCTGCTCAACAA+GGG + chr3.3:89353977-89353996 MS.gene073042:CDS 50.0%
CAGGACTACAAGGCACAGTT+GGG + chr3.3:89354291-89354310 MS.gene073042:CDS 50.0%
CCTTCTCAGGCAAGAGAACA+GGG + chr3.3:89353540-89353559 MS.gene073042:CDS 50.0%
CTTCTCAGGCAAGAGAACAG+GGG + chr3.3:89353541-89353560 MS.gene073042:CDS 50.0%
GCAATATGTTGGGCCTGACT+TGG + chr3.3:89354203-89354222 MS.gene073042:CDS 50.0%
GCAATTGAATCCGTTGTGGC+AGG - chr3.3:89353397-89353416 None:intergenic 50.0%
GCAGCCTTCTCACTTCATTG+AGG + chr3.3:89353575-89353594 MS.gene073042:CDS 50.0%
GCTTTCATCGCATCCAAGTC+AGG - chr3.3:89354219-89354238 None:intergenic 50.0%
GTCCCTGTATGATACCCTTC+TGG + chr3.3:89354344-89354363 MS.gene073042:CDS 50.0%
TATGTGCCTCCTGCTCAACA+AGG + chr3.3:89353976-89353995 MS.gene073042:CDS 50.0%
! AATCAAGCTGATGACGTGGG+TGG + chr3.3:89354156-89354175 MS.gene073042:CDS 50.0%
! GGTGAATCAAGCTGATGACG+TGG + chr3.3:89354152-89354171 MS.gene073042:CDS 50.0%
!! CTGGGTTGGTCAAAGAGGTT+AGG + chr3.3:89353827-89353846 MS.gene073042:CDS 50.0%
!! GCTCCAGAAGGGTATCATAC+AGG - chr3.3:89354350-89354369 None:intergenic 50.0%
AGCTGTTCTAGCAGCCGTGA+GGG - chr3.3:89353944-89353963 None:intergenic 55.0%
CCCTGTTCTCTTGCCTGAGA+AGG - chr3.3:89353543-89353562 None:intergenic 55.0%
GCAGGACTACAAGGCACAGT+TGG + chr3.3:89354290-89354309 MS.gene073042:CDS 55.0%
GGACTACAAGGCACAGTTGG+GGG + chr3.3:89354293-89354312 MS.gene073042:CDS 55.0%
GGGACATTGGATCAAGGTGC+CGG + chr3.3:89354498-89354517 MS.gene073042:CDS 55.0%
GGGGCCATAGATCTTCAGAG+TGG + chr3.3:89353997-89354016 MS.gene073042:CDS 55.0%
TCTATGGCCCCTTGTTGAGC+AGG - chr3.3:89353988-89354007 None:intergenic 55.0%
TGTGCCTCCTGCTCAACAAG+GGG + chr3.3:89353978-89353997 MS.gene073042:CDS 55.0%
! GGGCAGCTTTTGCCTTTGGA+AGG - chr3.3:89353924-89353943 None:intergenic 55.0%
! GTGAGGGCAGCTTTTGCCTT+TGG - chr3.3:89353928-89353947 None:intergenic 55.0%
ATGGCCCCTTGTTGAGCAGG+AGG - chr3.3:89353985-89354004 None:intergenic 60.0%
CAGCTGTTCTAGCAGCCGTG+AGG - chr3.3:89353945-89353964 None:intergenic 60.0%
CAGGCAAGAGAACAGGGGAG+AGG + chr3.3:89353546-89353565 MS.gene073042:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 89353376 89354644 89353376 ID=MS.gene073042
chr3.3 mRNA 89353376 89354644 89353376 ID=MS.gene073042.t1;Parent=MS.gene073042
chr3.3 exon 89353376 89354644 89353376 ID=MS.gene073042.t1.exon1;Parent=MS.gene073042.t1
chr3.3 CDS 89353376 89354644 89353376 ID=cds.MS.gene073042.t1;Parent=MS.gene073042.t1
Gene Sequence

>MS.gene073042

ATGTCTACATCTTATCTTCCTGCCACAACGGATTCAATTGCTCAGGCATTGGAGGCTAAAGACCCTTCTGATGCGATATCCATTCTTTATCGTGTACTTGATGATCCATCTTCTTCACCAGAAGCTCTGCGTATGAAAGAGCAGGCCATCACAAATCTTACTGACCTTCTCAGGCAAGAGAACAGGGGAGAGGATCTGCGCAGCCTTCTCACTTCATTGAGGCCCTTTTTCTCCTTGATTCCTAAGGCAAAAACTGCAAAGATTGTAAGGGGAATAATTGACTCAGTTGCTAAAATACCAGGGACATCTGATCTACAGATTTCACTGTGTAAAGAAATGGTGCAGTGGACTCGTGCTGAAAAGCGTACTTTTCTGAGGCAACGAATTGAGGCAAGACTTGCAGCGCTTTTGATGGAAACTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGGTTGGTCAAAGAGGTTAGGAGATTAGATGACAAACTTCTTCTTGTAGACATTGACTTGCTCGAAAGCAAACTGCACTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCCCTCACGGCTGCTAGAACAGCTGCAAATGCTATTTATGTGCCTCCTGCTCAACAAGGGGCCATAGATCTTCAGAGTGGAATACTTCATGCTGAGGAGAAGGACTACAAAACTGCATACAGCTATTTCTTTGAAGCCTTTGAGTCTTTCAATGCTCTTGAAGACCCTAAGGCTATTTTCAGCCTGAAATATATGTTGTTGTGTAAGATCATGGTGAATCAAGCTGATGACGTGGGTGGAATTATTTCTTCTAAGGCAGGATTGCAATATGTTGGGCCTGACTTGGATGCGATGAAAGCTGTTGCTGATGCTTATTCTAAGCGATCCCTTAAGTTTTTCGAAACTGCTTTGCAGGACTACAAGGCACAGTTGGGGGAAGACCCAATTGTTCACAGACACATTTCGTCCCTGTATGATACCCTTCTGGAGCAGAATCTTTGTAGGTTGATTGAGCCATTCTCAAGAGTTGAGATTGCACATATTGCTGAGCTTATCGAGCTTCCAATTGTTCACGTTGAGCGGAAGATGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCCGGATGCCTCGTTATATTCGATGATCCCAAGACTGATGCAATATACCCTGCAACTTTAGAGACCATTTCCAATGTTGGGAAAGTGGTTGACAGTCTTTATGTTAGGTCTGCCAAGATCATGGCATGA
Protein sequence

>MS.gene073042.t1

MSTSYLPATTDSIAQALEAKDPSDAISILYRVLDDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLTSLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQISLCKEMVQWTRAEKRTFLRQRIEARLAALLMETKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAIFSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAYSKRSLKFFETALQDYKAQLGEDPIVHRHISSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIVHVERKMSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA