Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09558.t1 | XP_003611648.1 | 98.8 | 514 | 6 | 0 | 1 | 514 | 1 | 514 | 1.50E-261 | 911.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09558.t1 | Q9SNV9 | 82.8 | 466 | 77 | 1 | 38 | 500 | 36 | 501 | 3.7e-221 | 768.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09558.t1 | G7K3Y6 | 98.8 | 514 | 6 | 0 | 1 | 514 | 1 | 514 | 1.1e-261 | 911.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene09558 | 0.860427 | 2.08E-63 | -1.69E-46 |
| MS.gene049151 | MS.gene09558 | 0.825411 | 4.76E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene09558 | 0.856716 | 2.67E-62 | -1.69E-46 |
| MS.gene049260 | MS.gene09558 | 0.83838 | 2.98E-57 | -1.69E-46 |
| MS.gene049378 | MS.gene09558 | 0.802242 | 6.16E-49 | -1.69E-46 |
| MS.gene050060 | MS.gene09558 | 0.816085 | 6.63E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene09558 | 0.802208 | 6.26E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene09558 | 0.804415 | 2.18E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene09558 | -0.807757 | 4.32E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene09558 | 0.840986 | 6.25E-58 | -1.69E-46 |
| MS.gene050680 | MS.gene09558 | 0.808798 | 2.59E-50 | -1.69E-46 |
| MS.gene050987 | MS.gene09558 | 0.84791 | 8.57E-60 | -1.69E-46 |
| MS.gene051373 | MS.gene09558 | 0.840961 | 6.34E-58 | -1.69E-46 |
| MS.gene051535 | MS.gene09558 | 0.805487 | 1.30E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene09558 | 0.852821 | 3.59E-61 | -1.69E-46 |
| MS.gene052077 | MS.gene09558 | 0.811893 | 5.58E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene09558 | 0.813649 | 2.30E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene09558 | 0.833827 | 4.26E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene09558 | 0.836777 | 7.67E-57 | -1.69E-46 |
| MS.gene052426 | MS.gene09558 | 0.820892 | 5.40E-53 | -1.69E-46 |
| MS.gene05316 | MS.gene09558 | 0.819107 | 1.38E-52 | -1.69E-46 |
| MS.gene053494 | MS.gene09558 | 0.844077 | 9.45E-59 | -1.69E-46 |
| MS.gene053577 | MS.gene09558 | 0.81253 | 4.05E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene09558 | 0.800401 | 1.47E-48 | -1.69E-46 |
| MS.gene054349 | MS.gene09558 | 0.82554 | 4.43E-54 | -1.69E-46 |
| MS.gene054556 | MS.gene09558 | 0.80078 | 1.23E-48 | -1.69E-46 |
| MS.gene054930 | MS.gene09558 | 0.857684 | 1.38E-62 | -1.69E-46 |
| MS.gene05510 | MS.gene09558 | 0.815293 | 9.96E-52 | -1.69E-46 |
| MS.gene055367 | MS.gene09558 | 0.805497 | 1.30E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene09558 | 0.835626 | 1.50E-56 | -1.69E-46 |
| MS.gene055701 | MS.gene09558 | 0.846277 | 2.40E-59 | -1.69E-46 |
| MS.gene056506 | MS.gene09558 | 0.803227 | 3.85E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene09558 | 0.803855 | 2.86E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene09558 | 0.811952 | 5.41E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene09558 | 0.846085 | 2.71E-59 | -1.69E-46 |
| MS.gene057396 | MS.gene09558 | 0.81357 | 2.39E-51 | -1.69E-46 |
| MS.gene057448 | MS.gene09558 | 0.825092 | 5.66E-54 | -1.69E-46 |
| MS.gene057449 | MS.gene09558 | 0.815933 | 7.17E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene09558 | 0.824099 | 9.69E-54 | -1.69E-46 |
| MS.gene057750 | MS.gene09558 | 0.805306 | 1.42E-49 | -1.69E-46 |
| MS.gene057754 | MS.gene09558 | 0.800673 | 1.29E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene09558 | 0.810413 | 1.17E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene09558 | 0.86917 | 3.78E-66 | -1.69E-46 |
| MS.gene058435 | MS.gene09558 | 0.812005 | 5.27E-51 | -1.69E-46 |
| MS.gene058833 | MS.gene09558 | 0.820875 | 5.44E-53 | -1.69E-46 |
| MS.gene058949 | MS.gene09558 | 0.832173 | 1.10E-55 | -1.69E-46 |
| MS.gene059128 | MS.gene09558 | 0.818318 | 2.09E-52 | -1.69E-46 |
| MS.gene059161 | MS.gene09558 | 0.818768 | 1.65E-52 | -1.69E-46 |
| MS.gene059247 | MS.gene09558 | 0.820327 | 7.27E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene09558 | 0.838179 | 3.35E-57 | -1.69E-46 |
| MS.gene059609 | MS.gene09558 | 0.814022 | 1.90E-51 | -1.69E-46 |
| MS.gene059788 | MS.gene09558 | 0.831085 | 2.04E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene09558 | 0.811017 | 8.64E-51 | -1.69E-46 |
| MS.gene059899 | MS.gene09558 | 0.85338 | 2.48E-61 | -1.69E-46 |
| MS.gene060083 | MS.gene09558 | 0.802338 | 5.88E-49 | -1.69E-46 |
| MS.gene060247 | MS.gene09558 | 0.801013 | 1.10E-48 | -1.69E-46 |
| MS.gene060407 | MS.gene09558 | 0.806356 | 8.56E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene09558 | 0.809437 | 1.89E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene09558 | 0.803982 | 2.69E-49 | -1.69E-46 |
| MS.gene061159 | MS.gene09558 | 0.814431 | 1.55E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09558 | MS.gene067471 | PPI |
| MS.gene85960 | MS.gene09558 | PPI |
| MS.gene09558 | MS.gene83599 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09558.t1 | MTR_5g016270 | 98.638 | 514 | 7 | 0 | 1 | 514 | 1 | 514 | 0.0 | 1023 |
| MS.gene09558.t1 | MTR_4g095075 | 84.708 | 497 | 70 | 1 | 18 | 514 | 25 | 515 | 0.0 | 848 |
| MS.gene09558.t1 | MTR_3g102620 | 77.282 | 471 | 101 | 1 | 24 | 494 | 44 | 508 | 0.0 | 753 |
| MS.gene09558.t1 | MTR_8g028050 | 67.223 | 479 | 153 | 1 | 16 | 494 | 51 | 525 | 0.0 | 679 |
| MS.gene09558.t1 | MTR_3g088440 | 43.077 | 455 | 235 | 8 | 52 | 490 | 34 | 480 | 1.86e-107 | 330 |
| MS.gene09558.t1 | MTR_2g104990 | 41.667 | 456 | 244 | 8 | 51 | 491 | 44 | 492 | 5.56e-106 | 327 |
| MS.gene09558.t1 | MTR_2g104990 | 41.667 | 456 | 244 | 8 | 51 | 491 | 69 | 517 | 9.17e-106 | 327 |
| MS.gene09558.t1 | MTR_3g088460 | 40.162 | 493 | 268 | 9 | 16 | 490 | 4 | 487 | 3.28e-100 | 312 |
| MS.gene09558.t1 | MTR_3g088440 | 46.479 | 355 | 176 | 6 | 52 | 398 | 34 | 382 | 1.62e-96 | 298 |
| MS.gene09558.t1 | MTR_3g088460 | 41.889 | 413 | 221 | 8 | 16 | 418 | 4 | 407 | 1.29e-95 | 296 |
| MS.gene09558.t1 | MTR_4g028490 | 77.215 | 79 | 17 | 1 | 1 | 79 | 1 | 78 | 1.92e-29 | 110 |
| MS.gene09558.t1 | MTR_0041s0030 | 26.824 | 425 | 257 | 14 | 61 | 466 | 38 | 427 | 2.19e-26 | 114 |
| MS.gene09558.t1 | MTR_2g062640 | 25.424 | 354 | 205 | 10 | 97 | 444 | 3 | 303 | 2.42e-21 | 96.3 |
| MS.gene09558.t1 | MTR_4g094602 | 39.726 | 146 | 75 | 4 | 225 | 360 | 1 | 143 | 5.28e-20 | 87.0 |
| MS.gene09558.t1 | MTR_2g062640 | 25.076 | 331 | 225 | 10 | 120 | 444 | 22 | 335 | 2.96e-16 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09558.t1 | AT2G23150 | 81.933 | 476 | 85 | 1 | 25 | 500 | 27 | 501 | 0.0 | 805 |
| MS.gene09558.t1 | AT5G67330 | 76.087 | 506 | 115 | 2 | 2 | 507 | 5 | 504 | 0.0 | 778 |
| MS.gene09558.t1 | AT1G47240 | 78.243 | 478 | 100 | 1 | 17 | 494 | 34 | 507 | 0.0 | 777 |
| MS.gene09558.t1 | AT4G18790 | 67.775 | 481 | 148 | 1 | 11 | 491 | 33 | 506 | 0.0 | 665 |
| MS.gene09558.t1 | AT1G15960 | 42.619 | 420 | 227 | 7 | 51 | 463 | 34 | 446 | 8.36e-105 | 323 |
| MS.gene09558.t1 | AT1G80830 | 42.619 | 420 | 227 | 7 | 51 | 463 | 42 | 454 | 1.90e-101 | 315 |
| MS.gene09558.t1 | AT1G80830 | 42.619 | 420 | 227 | 7 | 51 | 463 | 42 | 454 | 1.90e-101 | 315 |
| MS.gene09558.t1 | AT5G03280 | 25.389 | 386 | 265 | 9 | 61 | 439 | 24 | 393 | 3.47e-29 | 122 |
Find 123 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCCCAATCCTGTATATA+TGG | 0.228743 | 5.2:-7875321 | MS.gene09558:CDS |
| CTCTCATTTGCATGGATGTT+TGG | 0.230544 | 5.2:-7875827 | MS.gene09558:CDS |
| TTCCTCTTTCTTGAGAATTA+TGG | 0.232223 | 5.2:-7875899 | MS.gene09558:CDS |
| GTAATGGCCTTGTTCCTCTT+TGG | 0.242402 | 5.2:-7877051 | MS.gene09558:CDS |
| CTTGGGCAAGGATTGTTCTT+TGG | 0.245807 | 5.2:-7877150 | MS.gene09558:CDS |
| TGCCGTTCTTATTGCTATAA+TGG | 0.260123 | 5.2:-7875852 | MS.gene09558:CDS |
| GGTTTCAAAGGAACAAATAA+TGG | 0.283702 | 5.2:-7875038 | MS.gene09558:CDS |
| TAATGGCCTTGTTCCTCTTT+GGG | 0.305235 | 5.2:-7877050 | MS.gene09558:CDS |
| TCTTATGTGGGCTACGGCTA+TGG | 0.312128 | 5.2:-7877257 | MS.gene09558:CDS |
| CGCTGTTATGGCTTCTTATG+TGG | 0.313493 | 5.2:-7877270 | MS.gene09558:CDS |
| TCTGATATTCAAGAGGTTAT+AGG | 0.318147 | 5.2:-7877100 | MS.gene09558:CDS |
| CTGATATTCAAGAGGTTATA+GGG | 0.327415 | 5.2:-7877099 | MS.gene09558:CDS |
| TAGGGAGTGCTATTGCTATT+AGG | 0.333861 | 5.2:-7877081 | MS.gene09558:CDS |
| AGATCTCCTTCCAAGTTTCC+AGG | 0.335579 | 5.2:+7877319 | None:intergenic |
| CTTCAATCTGGTGCAATTGC+TGG | 0.345914 | 5.2:-7877298 | MS.gene09558:CDS |
| TTGCTGGGTATTCGCTGTTA+TGG | 0.347044 | 5.2:-7877282 | MS.gene09558:CDS |
| ATTGATTCCCTTGCTTTGTT+TGG | 0.349044 | 5.2:-7875059 | MS.gene09558:CDS |
| GAATTATGGTGTGAGGAAAT+TGG | 0.350066 | 5.2:-7875885 | MS.gene09558:CDS |
| TTCCTGGCTTGTGGCTGCTC+TGG | 0.351790 | 5.2:-7874166 | MS.gene09558:CDS |
| GACAAATATATTAATAATAA+AGG | 0.352339 | 5.2:+7875444 | None:intergenic |
| TCCTGTATATATGGGGTATT+GGG | 0.357893 | 5.2:-7875312 | MS.gene09558:CDS |
| CTTATGTGGGCTACGGCTAT+GGG | 0.366792 | 5.2:-7877256 | MS.gene09558:CDS |
| AACAGCTTGTTGTATAGTTC+TGG | 0.368091 | 5.2:+7875615 | None:intergenic |
| GTTTCAAAGGAACAAATAAT+GGG | 0.368092 | 5.2:-7875037 | MS.gene09558:CDS |
| TCTGAAAAGGTTGTCGTTGT+TGG | 0.368268 | 5.2:-7877466 | MS.gene09558:CDS |
| GCTCTGGTGATAGTGATAAA+TGG | 0.371973 | 5.2:-7874150 | MS.gene09558:CDS |
| ACGTAACGGAGCTTGAAATA+AGG | 0.375796 | 5.2:+7874028 | None:intergenic |
| TAGCGCAATGGTGGACTCTA+TGG | 0.377756 | 5.2:+7875474 | None:intergenic |
| CAGTACCTTCAGGAGAAGTA+TGG | 0.378008 | 5.2:-7875352 | MS.gene09558:CDS |
| ATCCTGTATATATGGGGTAT+TGG | 0.391603 | 5.2:-7875313 | MS.gene09558:CDS |
| CTTGCTTTGTTTGGTTTCAA+AGG | 0.392387 | 5.2:-7875050 | MS.gene09558:CDS |
| TGTTGCTACGGGGAGACATT+TGG | 0.399325 | 5.2:-7877200 | MS.gene09558:CDS |
| ATGACTGAAGTTGCTTTGAT+TGG | 0.400536 | 5.2:-7877124 | MS.gene09558:CDS |
| CGCTTACGATTCATCTGAAA+AGG | 0.410529 | 5.2:-7877479 | MS.gene09558:CDS |
| TTTCAATACAGACCATTTCC+TGG | 0.412146 | 5.2:-7874182 | MS.gene09558:intron |
| CAACAAGCTGTTGGAGTTGT+TGG | 0.415507 | 5.2:-7875604 | MS.gene09558:CDS |
| GGCCTTGTTCCTCTTTGGGC+TGG | 0.416642 | 5.2:-7877046 | MS.gene09558:CDS |
| ATGGTACTGAAATAGCAAAT+AGG | 0.419910 | 5.2:-7875396 | MS.gene09558:CDS |
| ATAATGGGCACTTTCAAGAT+TGG | 0.421189 | 5.2:-7875022 | MS.gene09558:CDS |
| AGCAAGGGAATCAATGCAAA+AGG | 0.422846 | 5.2:+7875067 | None:intergenic |
| ATTCCCAATCCTGTATATAT+GGG | 0.424368 | 5.2:-7875320 | MS.gene09558:CDS |
| ATAGTTCTGGAGCTAAGTTT+AGG | 0.430966 | 5.2:+7875628 | None:intergenic |
| GATGGTGTTGATGTTCTTGT+TGG | 0.436854 | 5.2:-7875791 | MS.gene09558:intron |
| TTCGTAGGCTTCTTCTTCGT+CGG | 0.440294 | 5.2:+7877441 | None:intergenic |
| TGCTCTTGTTCAATCCAGGC+AGG | 0.441118 | 5.2:-7875545 | MS.gene09558:CDS |
| TACCCCATATATACAGGATT+GGG | 0.442489 | 5.2:+7875317 | None:intergenic |
| AAATGCAGGGCAGTACCTTC+AGG | 0.445908 | 5.2:-7875362 | MS.gene09558:CDS |
| CATAGTTTCTTCCATGAAAA+CGG | 0.452161 | 5.2:+7877388 | None:intergenic |
| TTGTCATTACTGCTTTAGAT+TGG | 0.452490 | 5.2:-7877021 | MS.gene09558:intron |
| AGCAGCCACAAGCCAGGAAA+TGG | 0.465152 | 5.2:+7874170 | None:intergenic |
| GGTCAGAGTAGCACTATTAC+TGG | 0.465242 | 5.2:-7875277 | MS.gene09558:CDS |
| GCAAGGTTAGGTGTTGCTAC+GGG | 0.467938 | 5.2:-7877211 | MS.gene09558:CDS |
| GGATGAGGGCGTTGATTACT+CGG | 0.472145 | 5.2:-7875198 | MS.gene09558:CDS |
| GCTGTTATGGCTTCTTATGT+GGG | 0.476897 | 5.2:-7877269 | MS.gene09558:CDS |
| CACCATAATTCTCAAGAAAG+AGG | 0.481932 | 5.2:+7875897 | None:intergenic |
| ATTCTGCTCTTGTTCAATCC+AGG | 0.482576 | 5.2:-7875549 | MS.gene09558:CDS |
| CTATGGTTATTCAGTGGACC+AGG | 0.490109 | 5.2:-7877370 | MS.gene09558:CDS |
| TGTCACAACTGTGTTTGCTA+AGG | 0.491481 | 5.2:-7875425 | MS.gene09558:CDS |
| ACCCAATACCCCATATATAC+AGG | 0.494023 | 5.2:+7875311 | None:intergenic |
| TACGAAGCTGACGTGGACTC+TGG | 0.498286 | 5.2:-7877424 | MS.gene09558:CDS |
| ACAAGAACATCAACACCATC+TGG | 0.500462 | 5.2:+7875794 | None:intergenic |
| GTCACAACTGTGTTTGCTAA+GGG | 0.500490 | 5.2:-7875424 | MS.gene09558:CDS |
| TTGGAAGGAGATCTTCAATC+TGG | 0.500957 | 5.2:-7877310 | MS.gene09558:CDS |
| AGCAAGGTTAGGTGTTGCTA+CGG | 0.506542 | 5.2:-7877212 | MS.gene09558:CDS |
| TTCAATCTGGTGCAATTGCT+GGG | 0.512314 | 5.2:-7877297 | MS.gene09558:CDS |
| ATACCCCATATATACAGGAT+TGG | 0.515369 | 5.2:+7875316 | None:intergenic |
| GTTGTTCTAACAGAGGTTGT+TGG | 0.516654 | 5.2:+7877524 | None:intergenic |
| TTGGATCCTGGAAACTTGGA+AGG | 0.517550 | 5.2:-7877325 | MS.gene09558:CDS |
| AGGATCGGTCTTGTAAATGC+AGG | 0.518450 | 5.2:-7875376 | MS.gene09558:CDS |
| ATGGCTTCTTATGTGGGCTA+CGG | 0.520318 | 5.2:-7877263 | MS.gene09558:CDS |
| ACTATTACTGGTACATATGC+TGG | 0.527712 | 5.2:-7875265 | MS.gene09558:CDS |
| GTAGAGATGAGTATCCTACT+TGG | 0.535483 | 5.2:-7877168 | MS.gene09558:CDS |
| CAAGATTGGCTCTGTCCTCA+AGG | 0.536538 | 5.2:-7875008 | MS.gene09558:intron |
| ATAAGTGCAACTATCATAGT+CGG | 0.536590 | 5.2:+7875160 | None:intergenic |
| AGAGTCCACGTCAGCTTCGT+AGG | 0.542462 | 5.2:+7877426 | None:intergenic |
| TAATGGCTCTCTCATTTGCA+TGG | 0.545987 | 5.2:-7875835 | MS.gene09558:CDS |
| TAAGTGCAACTATCATAGTC+GGG | 0.551179 | 5.2:+7875161 | None:intergenic |
| GATCGAGTTAATCTTTGCCA+AGG | 0.551708 | 5.2:+7874000 | None:intergenic |
| ACAGACCATTTCCTGGCTTG+TGG | 0.551762 | 5.2:-7874175 | MS.gene09558:intron |
| GCTATACTCATCAGAAAACC+TGG | 0.552760 | 5.2:+7877352 | None:intergenic |
| TCTTGTTGTTGTTCTAACAG+AGG | 0.555158 | 5.2:+7877517 | None:intergenic |
| CTTTGAAACCAAACAAAGCA+AGG | 0.557493 | 5.2:+7875051 | None:intergenic |
| TTAGAACAACAACAAGAAGA+AGG | 0.558025 | 5.2:-7877511 | MS.gene09558:CDS |
| GGTATTGGGTTACTAGCAGC+TGG | 0.560371 | 5.2:-7875298 | MS.gene09558:CDS |
| CACCAGAGCAGCCACAAGCC+AGG | 0.561920 | 5.2:+7874164 | None:intergenic |
| AGAACTATACAACAAGCTGT+TGG | 0.566192 | 5.2:-7875613 | MS.gene09558:CDS |
| CACTGCTCCACTCACTTCAG+AGG | 0.566376 | 5.2:+7874104 | None:intergenic |
| GCAAGGGAATCAATGCAAAA+GGG | 0.569154 | 5.2:+7875068 | None:intergenic |
| TTCTTGAGAATTATGGTGTG+AGG | 0.571214 | 5.2:-7875892 | MS.gene09558:CDS |
| TAGAGATGAGTATCCTACTT+GGG | 0.572208 | 5.2:-7877167 | MS.gene09558:CDS |
| AGAACAATCCTTGCCCAAGT+AGG | 0.575207 | 5.2:+7877154 | None:intergenic |
| TTTGAAACCAAACAAAGCAA+GGG | 0.595987 | 5.2:+7875052 | None:intergenic |
| GGAGACAACTAGCGCAATGG+TGG | 0.598232 | 5.2:+7875465 | None:intergenic |
| CGCCTCCATACTTCTCCTGA+AGG | 0.601191 | 5.2:+7875347 | None:intergenic |
| CACCAGCCCAAAGAGGAACA+AGG | 0.602260 | 5.2:+7877044 | None:intergenic |
| ACTTATATTTGATTCTTCAG+AGG | 0.602962 | 5.2:-7875143 | MS.gene09558:CDS |
| ATGAGTATCCTACTTGGGCA+AGG | 0.603524 | 5.2:-7877162 | MS.gene09558:CDS |
| ATATGCTGGACAATTCATCA+TGG | 0.605595 | 5.2:-7875251 | MS.gene09558:CDS |
| GATTGGTTCTGATATTCAAG+AGG | 0.612261 | 5.2:-7877107 | MS.gene09558:CDS |
| CAGAGGTTGTTGGTGAGACA+TGG | 0.620954 | 5.2:+7877534 | None:intergenic |
| AGAAGCCTACGAAGCTGACG+TGG | 0.623584 | 5.2:-7877431 | MS.gene09558:CDS |
| GGATCGGTCTTGTAAATGCA+GGG | 0.624462 | 5.2:-7875375 | MS.gene09558:CDS |
| AGCCATTATAGCAATAAGAA+CGG | 0.624673 | 5.2:+7875850 | None:intergenic |
| CTTCAGGAGAAGTATGGAGG+CGG | 0.626449 | 5.2:-7875346 | MS.gene09558:CDS |
| GCTGGACAATTCATCATGGG+TGG | 0.626939 | 5.2:-7875247 | MS.gene09558:CDS |
| TATGCTGGACAATTCATCAT+GGG | 0.627133 | 5.2:-7875250 | MS.gene09558:CDS |
| ATGACAACACCAGCCCAAAG+AGG | 0.629953 | 5.2:+7877037 | None:intergenic |
| AATTGAGAGCTTCTTGAACG+CGG | 0.634426 | 5.2:+7875503 | None:intergenic |
| ACTGAAATAGCAAATAGGAT+CGG | 0.636009 | 5.2:-7875391 | MS.gene09558:CDS |
| TTATGTGGGCTACGGCTATG+GGG | 0.641019 | 5.2:-7877255 | MS.gene09558:CDS |
| AAAGGAGACAACTAGCGCAA+TGG | 0.641305 | 5.2:+7875462 | None:intergenic |
| AAGAAACTATGGTTATTCAG+TGG | 0.641832 | 5.2:-7877376 | MS.gene09558:CDS |
| TTCCCAATCCTGTATATATG+GGG | 0.642639 | 5.2:-7875319 | MS.gene09558:CDS |
| TACCTTCAGGAGAAGTATGG+AGG | 0.648168 | 5.2:-7875349 | MS.gene09558:CDS |
| AGTTTCTTCCATGAAAACGG+TGG | 0.652794 | 5.2:+7877391 | None:intergenic |
| TTGCCAAGGTGAAAACGTAA+CGG | 0.654921 | 5.2:+7874014 | None:intergenic |
| GAATGCAAGAATACATTGTG+AGG | 0.660682 | 5.2:+7875568 | None:intergenic |
| CAAGGTTAGGTGTTGCTACG+GGG | 0.666495 | 5.2:-7877210 | MS.gene09558:CDS |
| TTTGGTGAAGCAAAGCCAGA+TGG | 0.673749 | 5.2:-7875809 | MS.gene09558:CDS |
| GGCTGCTCAACTCTCCGTGG+TGG | 0.674172 | 5.2:+7873966 | None:intergenic |
| TGTGGCTGCTCAACTCTCCG+TGG | 0.704473 | 5.2:+7873963 | None:intergenic |
| ATCAAAGACAGTTACCACCA+CGG | 0.705378 | 5.2:-7873980 | MS.gene09558:CDS |
| TGTTGTGTGTGTAATAACAG+CGG | 0.786619 | 5.2:-7874073 | MS.gene09558:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GACAAATATATTAATAATAA+AGG | + | chr5.2:7876063-7876082 | None:intergenic | 10.0% |
| !!! | AAATTATCTTATTATTGTTT+TGG | - | chr5.2:7874760-7874779 | MS.gene09558:intron | 10.0% |
| !!! | ATTTGAAATTCAAATTAATA+TGG | + | chr5.2:7875305-7875324 | None:intergenic | 10.0% |
| !!! | TTAAATATTTAACTTTTATG+TGG | - | chr5.2:7875561-7875580 | MS.gene09558:CDS | 10.0% |
| !!! | TGTTAATTTTCATTTAAAGT+AGG | - | chr5.2:7874558-7874577 | MS.gene09558:intron | 15.0% |
| !!! | TTTAGTTTCTTTTTTTTGTT+TGG | - | chr5.2:7874631-7874650 | MS.gene09558:intron | 15.0% |
| !! | TTGATAAAAATATTAACGAG+GGG | + | chr5.2:7877178-7877197 | None:intergenic | 20.0% |
| !! | TTTCTTGATATTATTACAGT+GGG | - | chr5.2:7874791-7874810 | MS.gene09558:intron | 20.0% |
| !!! | GTTGATAAAAATATTAACGA+GGG | + | chr5.2:7877179-7877198 | None:intergenic | 20.0% |
| !!! | TAAATTTCAGTTGCTTTAAA+TGG | - | chr5.2:7874506-7874525 | MS.gene09558:intron | 20.0% |
| !!! | TCTGAAATTGTGTTTATAAA+TGG | + | chr5.2:7876707-7876726 | None:intergenic | 20.0% |
| !!! | TCTTATTATTGTTTTGGAAT+TGG | - | chr5.2:7874766-7874785 | MS.gene09558:intron | 20.0% |
| !!! | TGAATTTGAAGTTGAAAAAA+TGG | - | chr5.2:7876285-7876304 | MS.gene09558:intron | 20.0% |
| !!! | TTTTCTTGATATTATTACAG+TGG | - | chr5.2:7874790-7874809 | MS.gene09558:intron | 20.0% |
| ! | ACTTATATTTGATTCTTCAG+AGG | - | chr5.2:7876361-7876380 | MS.gene09558:intron | 25.0% |
| ! | AGAAGATACTTCAAAATAAG+TGG | + | chr5.2:7874716-7874735 | None:intergenic | 25.0% |
| ! | ATTGACATATTCTTACCAAA+GGG | - | chr5.2:7877119-7877138 | MS.gene09558:CDS | 25.0% |
| ! | CATTATTAAGTCAATTTCCT+AGG | - | chr5.2:7875786-7875805 | MS.gene09558:intron | 25.0% |
| ! | CTTTCTTAGATTCATTTCTT+TGG | - | chr5.2:7875352-7875371 | MS.gene09558:CDS | 25.0% |
| ! | GAAATTGTGTTTATAAATGG+TGG | + | chr5.2:7876704-7876723 | None:intergenic | 25.0% |
| ! | GACATATATGAATATGCAAA+TGG | + | chr5.2:7876597-7876616 | None:intergenic | 25.0% |
| ! | GTCTCATATTGAATGATATA+AGG | + | chr5.2:7876730-7876749 | None:intergenic | 25.0% |
| ! | GTTTCAAAGGAACAAATAAT+GGG | - | chr5.2:7876467-7876486 | MS.gene09558:intron | 25.0% |
| ! | TGATAAAAATATTAACGAGG+GGG | + | chr5.2:7877177-7877196 | None:intergenic | 25.0% |
| !! | CGTTGATAAAAATATTAACG+AGG | + | chr5.2:7877180-7877199 | None:intergenic | 25.0% |
| !! | TATATGATTCCTTTGCATTT+TGG | - | chr5.2:7876519-7876538 | MS.gene09558:intron | 25.0% |
| !! | TGAAGTATCTTCTTTGATTA+AGG | - | chr5.2:7874723-7874742 | MS.gene09558:intron | 25.0% |
| !!! | AGTTTGATGCTTTGATTTTT+TGG | - | chr5.2:7877261-7877280 | MS.gene09558:CDS | 25.0% |
| !!! | ATAGTGTTTTTTAGTTGTAC+TGG | - | chr5.2:7874816-7874835 | MS.gene09558:intron | 25.0% |
| !!! | CATTAGATGTTTTGAATGAA+TGG | - | chr5.2:7876387-7876406 | MS.gene09558:intron | 25.0% |
| !!! | CGTTAATATTTTTATCAACG+TGG | - | chr5.2:7877180-7877199 | MS.gene09558:CDS | 25.0% |
| AAAAGCAAGACAATTGATCA+TGG | + | chr5.2:7875472-7875491 | None:intergenic | 30.0% | |
| AAGAAACTATGGTTATTCAG+TGG | - | chr5.2:7874128-7874147 | MS.gene09558:CDS | 30.0% | |
| AAGAAAGAGGAAAATGAAAC+TGG | + | chr5.2:7875597-7875616 | None:intergenic | 30.0% | |
| AAGATGGAATAGGTCTATAT+TGG | + | chr5.2:7876994-7877013 | None:intergenic | 30.0% | |
| ACTCGTATATTACTTGATGA+AGG | - | chr5.2:7875180-7875199 | MS.gene09558:CDS | 30.0% | |
| ACTGAAATAGCAAATAGGAT+CGG | - | chr5.2:7876113-7876132 | MS.gene09558:intron | 30.0% | |
| AGAACAACTCTACATTCAAA+AGG | + | chr5.2:7875148-7875167 | None:intergenic | 30.0% | |
| AGATGGAATAGGTCTATATT+GGG | + | chr5.2:7876993-7877012 | None:intergenic | 30.0% | |
| AGCCATTATAGCAATAAGAA+CGG | + | chr5.2:7875657-7875676 | None:intergenic | 30.0% | |
| ATAAGTGCAACTATCATAGT+CGG | + | chr5.2:7876347-7876366 | None:intergenic | 30.0% | |
| ATTCCCAATCCTGTATATAT+GGG | - | chr5.2:7876184-7876203 | MS.gene09558:intron | 30.0% | |
| CATAGTTTCTTCCATGAAAA+CGG | + | chr5.2:7874119-7874138 | None:intergenic | 30.0% | |
| CATATGCACAAATTGAAGTT+AGG | + | chr5.2:7875068-7875087 | None:intergenic | 30.0% | |
| CATGGATTCATCAATATTTC+TGG | + | chr5.2:7875454-7875473 | None:intergenic | 30.0% | |
| CCACTACCATGTTAAAATTT+GGG | - | chr5.2:7876848-7876867 | MS.gene09558:intron | 30.0% | |
| CTCGTATATTACTTGATGAA+GGG | - | chr5.2:7875181-7875200 | MS.gene09558:CDS | 30.0% | |
| CTGATATTCAAGAGGTTATA+GGG | - | chr5.2:7874405-7874424 | MS.gene09558:intron | 30.0% | |
| GAAGTTGAAAAAATGGATGA+GGG | - | chr5.2:7876292-7876311 | MS.gene09558:intron | 30.0% | |
| GATAATTTCTCTTACCTAAG+TGG | - | chr5.2:7877082-7877101 | MS.gene09558:CDS | 30.0% | |
| GATTGACATATTCTTACCAA+AGG | - | chr5.2:7877118-7877137 | MS.gene09558:CDS | 30.0% | |
| GGTTTCAAAGGAACAAATAA+TGG | - | chr5.2:7876466-7876485 | MS.gene09558:intron | 30.0% | |
| GTTATCCATTGTCAGTTTAT+TGG | - | chr5.2:7876559-7876578 | MS.gene09558:intron | 30.0% | |
| TATTCCCAATCCTGTATATA+TGG | - | chr5.2:7876183-7876202 | MS.gene09558:intron | 30.0% | |
| TCCACTACCATGTTAAAATT+TGG | - | chr5.2:7876847-7876866 | MS.gene09558:intron | 30.0% | |
| TCTGATATTCAAGAGGTTAT+AGG | - | chr5.2:7874404-7874423 | MS.gene09558:intron | 30.0% | |
| TGAAGTTGAAAAAATGGATG+AGG | - | chr5.2:7876291-7876310 | MS.gene09558:intron | 30.0% | |
| TGGTCTGTATTGAAATCATA+AGG | + | chr5.2:7877317-7877336 | None:intergenic | 30.0% | |
| TTAGAACAACAACAAGAAGA+AGG | - | chr5.2:7873993-7874012 | MS.gene09558:CDS | 30.0% | |
| TTCCTCTTTCTTGAGAATTA+TGG | - | chr5.2:7875605-7875624 | MS.gene09558:CDS | 30.0% | |
| TTTGGCATTTAAGAAGCTAT+TGG | - | chr5.2:7875496-7875515 | MS.gene09558:CDS | 30.0% | |
| ! | ACCATGTTAAAATTTGGGTT+CGG | - | chr5.2:7876853-7876872 | MS.gene09558:intron | 30.0% |
| ! | ATCAAGTTTAGAACCTAAAC+TGG | + | chr5.2:7874936-7874955 | None:intergenic | 30.0% |
| ! | ATGGTACTGAAATAGCAAAT+AGG | - | chr5.2:7876108-7876127 | MS.gene09558:intron | 30.0% |
| ! | TCTGATGAGTATAGCATTTT+TGG | - | chr5.2:7874160-7874179 | MS.gene09558:CDS | 30.0% |
| ! | TCTGCAATTATAGCATTTTC+TGG | - | chr5.2:7874600-7874619 | MS.gene09558:intron | 30.0% |
| ! | TTGTCATTACTGCTTTAGAT+TGG | - | chr5.2:7874483-7874502 | MS.gene09558:intron | 30.0% |
| ! | TTTGAAACCAAACAAAGCAA+GGG | + | chr5.2:7876455-7876474 | None:intergenic | 30.0% |
| ! | TTTTGCCTTTGTAGGTATTT+TGG | - | chr5.2:7875851-7875870 | MS.gene09558:CDS | 30.0% |
| !! | ATCTAAGAAAGCACTCTAAA+AGG | + | chr5.2:7875343-7875362 | None:intergenic | 30.0% |
| !! | ATTTTTATCAACGTGGATTG+AGG | - | chr5.2:7877187-7877206 | MS.gene09558:CDS | 30.0% |
| !! | GCTATTAGGATTTTGAGTAA+TGG | - | chr5.2:7874437-7874456 | MS.gene09558:intron | 30.0% |
| !! | GTCTTTAGAGTTTCTTGTTA+TGG | - | chr5.2:7874979-7874998 | MS.gene09558:intron | 30.0% |
| !!! | ACTAAGTTTTAGGTTCCATA+TGG | - | chr5.2:7874905-7874924 | MS.gene09558:intron | 30.0% |
| !!! | ACTGAACCATATGTTTTGAT+AGG | + | chr5.2:7875016-7875035 | None:intergenic | 30.0% |
| !!! | ATTGTCTTGCTTTTTCGTTT+TGG | - | chr5.2:7875478-7875497 | MS.gene09558:CDS | 30.0% |
| !!! | CTGAACCATATGTTTTGATA+GGG | + | chr5.2:7875015-7875034 | None:intergenic | 30.0% |
| !!! | TAACCGTTTTTAAGTTTGCA+GGG | + | chr5.2:7874664-7874683 | None:intergenic | 30.0% |
| !!! | TGAACCATATGTTTTGATAG+GGG | + | chr5.2:7875014-7875033 | None:intergenic | 30.0% |
| AAAAATATTAACGAGGGGGT+AGG | + | chr5.2:7877173-7877192 | None:intergenic | 35.0% | |
| AAAATATTAACGAGGGGGTA+GGG | + | chr5.2:7877172-7877191 | None:intergenic | 35.0% | |
| ACATCCCCTATCAAAACATA+TGG | - | chr5.2:7875007-7875026 | MS.gene09558:intron | 35.0% | |
| ACTATTACTGGTACATATGC+TGG | - | chr5.2:7876239-7876258 | MS.gene09558:intron | 35.0% | |
| AGAACTATACAACAAGCTGT+TGG | - | chr5.2:7875891-7875910 | MS.gene09558:CDS | 35.0% | |
| AGATGTCATGTAAACCTGTT+GGG | - | chr5.2:7875388-7875407 | MS.gene09558:CDS | 35.0% | |
| AGGAAAATGAAACTGGAACA+AGG | + | chr5.2:7875590-7875609 | None:intergenic | 35.0% | |
| AGGAACCAAAATACCTACAA+AGG | + | chr5.2:7875859-7875878 | None:intergenic | 35.0% | |
| ATACCCCATATATACAGGAT+TGG | + | chr5.2:7876191-7876210 | None:intergenic | 35.0% | |
| ATATGCTGGACAATTCATCA+TGG | - | chr5.2:7876253-7876272 | MS.gene09558:intron | 35.0% | |
| ATCCTGTATATATGGGGTAT+TGG | - | chr5.2:7876191-7876210 | MS.gene09558:intron | 35.0% | |
| ATGTAAAGAGTCGTAACGTT+TGG | - | chr5.2:7876628-7876647 | MS.gene09558:intron | 35.0% | |
| CAAAGGAATCATATACCTTG+AGG | + | chr5.2:7876514-7876533 | None:intergenic | 35.0% | |
| CACCATAATTCTCAAGAAAG+AGG | + | chr5.2:7875610-7875629 | None:intergenic | 35.0% | |
| CATGTCCAATAAACTGACAA+TGG | + | chr5.2:7876567-7876586 | None:intergenic | 35.0% | |
| CTAAACTTGATGTAAGAGGA+GGG | - | chr5.2:7874945-7874964 | MS.gene09558:intron | 35.0% | |
| GAATGCAAGAATACATTGTG+AGG | + | chr5.2:7875939-7875958 | None:intergenic | 35.0% | |
| GAATTATGGTGTGAGGAAAT+TGG | - | chr5.2:7875619-7875638 | MS.gene09558:CDS | 35.0% | |
| GTCCCACGTTTGATTAAATA+AGG | + | chr5.2:7876942-7876961 | None:intergenic | 35.0% | |
| TAAGTGCAACTATCATAGTC+GGG | + | chr5.2:7876346-7876365 | None:intergenic | 35.0% | |
| TACCCCATATATACAGGATT+GGG | + | chr5.2:7876190-7876209 | None:intergenic | 35.0% | |
| TAGAGATGAGTATCCTACTT+GGG | - | chr5.2:7874337-7874356 | MS.gene09558:intron | 35.0% | |
| TAGATGTCATGTAAACCTGT+TGG | - | chr5.2:7875387-7875406 | MS.gene09558:CDS | 35.0% | |
| TATGCTGGACAATTCATCAT+GGG | - | chr5.2:7876254-7876273 | MS.gene09558:intron | 35.0% | |
| TCTAAACTTGATGTAAGAGG+AGG | - | chr5.2:7874944-7874963 | MS.gene09558:intron | 35.0% | |
| TGACCCTGCAAACTTAAAAA+CGG | - | chr5.2:7874658-7874677 | MS.gene09558:intron | 35.0% | |
| TGAGAAGAGAAGACAACAAA+TGG | - | chr5.2:7875086-7875105 | MS.gene09558:CDS | 35.0% | |
| TGCCGTTCTTATTGCTATAA+TGG | - | chr5.2:7875652-7875671 | MS.gene09558:intron | 35.0% | |
| TGTAAAGAGTCGTAACGTTT+GGG | - | chr5.2:7876629-7876648 | MS.gene09558:intron | 35.0% | |
| TGTTGTGTGTGTAATAACAG+CGG | - | chr5.2:7877431-7877450 | MS.gene09558:CDS | 35.0% | |
| TTCCCAATCCTGTATATATG+GGG | - | chr5.2:7876185-7876204 | MS.gene09558:intron | 35.0% | |
| TTCTTGAGAATTATGGTGTG+AGG | - | chr5.2:7875612-7875631 | MS.gene09558:CDS | 35.0% | |
| TTTCAATACAGACCATTTCC+TGG | - | chr5.2:7877322-7877341 | MS.gene09558:CDS | 35.0% | |
| ! | AGTTTAGAACCTAAACTGGT+AGG | + | chr5.2:7874932-7874951 | None:intergenic | 35.0% |
| ! | ATGACTGAAGTTGCTTTGAT+TGG | - | chr5.2:7874380-7874399 | MS.gene09558:intron | 35.0% |
| ! | ATTGATTCCCTTGCTTTGTT+TGG | - | chr5.2:7876445-7876464 | MS.gene09558:intron | 35.0% |
| ! | CGTTTTCATGGAAGAAACTA+TGG | - | chr5.2:7874117-7874136 | MS.gene09558:CDS | 35.0% |
| ! | CTAAAAGGTGTGTTTCTTCA+TGG | + | chr5.2:7875328-7875347 | None:intergenic | 35.0% |
| ! | CTTTTCAGATGAATCGTAAG+CGG | + | chr5.2:7874027-7874046 | None:intergenic | 35.0% |
| ! | GATAAATGGCTATCTTTTGC+TGG | - | chr5.2:7877368-7877387 | MS.gene09558:CDS | 35.0% |
| ! | GTTTAGAACCTAAACTGGTA+GGG | + | chr5.2:7874931-7874950 | None:intergenic | 35.0% |
| ! | TAAGAATTCCACCGTTTTCA+TGG | - | chr5.2:7874105-7874124 | MS.gene09558:CDS | 35.0% |
| ! | TCCTGTATATATGGGGTATT+GGG | - | chr5.2:7876192-7876211 | MS.gene09558:intron | 35.0% |
| ! | TGCTTTCATTTTGCCTTTGT+AGG | - | chr5.2:7875843-7875862 | MS.gene09558:CDS | 35.0% |
| !! | AACAGCTTGTTGTATAGTTC+TGG | + | chr5.2:7875892-7875911 | None:intergenic | 35.0% |
| !! | AGTATAGCATTTTTGGATCC+TGG | - | chr5.2:7874167-7874186 | MS.gene09558:CDS | 35.0% |
| !! | ATAATGGGCACTTTCAAGAT+TGG | - | chr5.2:7876482-7876501 | MS.gene09558:intron | 35.0% |
| !! | ATAGTTCTGGAGCTAAGTTT+AGG | + | chr5.2:7875879-7875898 | None:intergenic | 35.0% |
| !! | ATTTTTGGATCCTGGAAACT+TGG | - | chr5.2:7874175-7874194 | MS.gene09558:intron | 35.0% |
| !! | CCCAAATTTTAACATGGTAG+TGG | + | chr5.2:7876851-7876870 | None:intergenic | 35.0% |
| !! | CTTGCTTTGTTTGGTTTCAA+AGG | - | chr5.2:7876454-7876473 | MS.gene09558:intron | 35.0% |
| !! | CTTTGAAACCAAACAAAGCA+AGG | + | chr5.2:7876456-7876475 | None:intergenic | 35.0% |
| !! | GATTGGTTCTGATATTCAAG+AGG | - | chr5.2:7874397-7874416 | MS.gene09558:intron | 35.0% |
| !! | GGCCTTATTTAATCAAACGT+GGG | - | chr5.2:7876937-7876956 | MS.gene09558:intron | 35.0% |
| !! | GGTTCTAAACTTGATGTAAG+AGG | - | chr5.2:7874941-7874960 | MS.gene09558:intron | 35.0% |
| !! | TCTTGTTGTTGTTCTAACAG+AGG | + | chr5.2:7873990-7874009 | None:intergenic | 35.0% |
| !!! | CTTACAAGCCACTTTTGTAA+GGG | + | chr5.2:7876670-7876689 | None:intergenic | 35.0% |
| !!! | GTAACCGTTTTTAAGTTTGC+AGG | + | chr5.2:7874665-7874684 | None:intergenic | 35.0% |
| AATGTCCACCACTCACATTT+CGG | - | chr5.2:7876915-7876934 | MS.gene09558:intron | 40.0% | |
| AATTGAGAGCTTCTTGAACG+CGG | + | chr5.2:7876004-7876023 | None:intergenic | 40.0% | |
| ACAAGAACATCAACACCATC+TGG | + | chr5.2:7875713-7875732 | None:intergenic | 40.0% | |
| ACCCAATACCCCATATATAC+AGG | + | chr5.2:7876196-7876215 | None:intergenic | 40.0% | |
| AGCAAGGGAATCAATGCAAA+AGG | + | chr5.2:7876440-7876459 | None:intergenic | 40.0% | |
| AGCCTATGATGTCAGCTTAT+TGG | - | chr5.2:7874689-7874708 | MS.gene09558:intron | 40.0% | |
| AGTTTCTTCCATGAAAACGG+TGG | + | chr5.2:7874116-7874135 | None:intergenic | 40.0% | |
| AGTTTGGTAGGGGTTGAATT+GGG | + | chr5.2:7876879-7876898 | None:intergenic | 40.0% | |
| ATCAAAGACAGTTACCACCA+CGG | - | chr5.2:7877524-7877543 | MS.gene09558:CDS | 40.0% | |
| ATCCAAGATCCATTGGAGAT+TGG | + | chr5.2:7876823-7876842 | None:intergenic | 40.0% | |
| ATTCTGCTCTTGTTCAATCC+AGG | - | chr5.2:7875955-7875974 | MS.gene09558:intron | 40.0% | |
| CATAAGGATATCATGAGCTG+TGG | + | chr5.2:7877301-7877320 | None:intergenic | 40.0% | |
| CATGTAAACCTGTTGGGATT+GGG | - | chr5.2:7875394-7875413 | MS.gene09558:CDS | 40.0% | |
| CGCTTACGATTCATCTGAAA+AGG | - | chr5.2:7874025-7874044 | MS.gene09558:CDS | 40.0% | |
| CTCTCATTTGCATGGATGTT+TGG | - | chr5.2:7875677-7875696 | MS.gene09558:intron | 40.0% | |
| CTTGTTGAACTTAGCCACTT+AGG | + | chr5.2:7877099-7877118 | None:intergenic | 40.0% | |
| GATCGAGTTAATCTTTGCCA+AGG | + | chr5.2:7877507-7877526 | None:intergenic | 40.0% | |
| GCAAGGGAATCAATGCAAAA+GGG | + | chr5.2:7876439-7876458 | None:intergenic | 40.0% | |
| GCAGTTCAACCAAAATGCAA+AGG | + | chr5.2:7876531-7876550 | None:intergenic | 40.0% | |
| GCCTATGATGTCAGCTTATT+GGG | - | chr5.2:7874690-7874709 | MS.gene09558:intron | 40.0% | |
| GCTATACTCATCAGAAAACC+TGG | + | chr5.2:7874155-7874174 | None:intergenic | 40.0% | |
| GCTGTTATGGCTTCTTATGT+GGG | - | chr5.2:7874235-7874254 | MS.gene09558:intron | 40.0% | |
| GGAATCTATCCAAGATCCAT+TGG | + | chr5.2:7876830-7876849 | None:intergenic | 40.0% | |
| GTAGAGATGAGTATCCTACT+TGG | - | chr5.2:7874336-7874355 | MS.gene09558:intron | 40.0% | |
| GTTGTTCTAACAGAGGTTGT+TGG | + | chr5.2:7873983-7874002 | None:intergenic | 40.0% | |
| TAATGGCTCTCTCATTTGCA+TGG | - | chr5.2:7875669-7875688 | MS.gene09558:intron | 40.0% | |
| TAGCTCAACCCTTACAAAAG+TGG | - | chr5.2:7876659-7876678 | MS.gene09558:intron | 40.0% | |
| TCATGTAAACCTGTTGGGAT+TGG | - | chr5.2:7875393-7875412 | MS.gene09558:CDS | 40.0% | |
| TCTGAAAAGGTTGTCGTTGT+TGG | - | chr5.2:7874038-7874057 | MS.gene09558:CDS | 40.0% | |
| TTACCCGAATAGCTTGATAG+CGG | - | chr5.2:7876792-7876811 | MS.gene09558:intron | 40.0% | |
| TTCAATCTGGTGCAATTGCT+GGG | - | chr5.2:7874207-7874226 | MS.gene09558:intron | 40.0% | |
| TTGCCAAGGTGAAAACGTAA+CGG | + | chr5.2:7877493-7877512 | None:intergenic | 40.0% | |
| TTGGAAGGAGATCTTCAATC+TGG | - | chr5.2:7874194-7874213 | MS.gene09558:intron | 40.0% | |
| ! | ACGTAACGGAGCTTGAAATA+AGG | + | chr5.2:7877479-7877498 | None:intergenic | 40.0% |
| ! | ACTTTTGTAAGGGTTGAGCT+AGG | + | chr5.2:7876660-7876679 | None:intergenic | 40.0% |
| ! | CCTTACAAAAGTGGCTTGTA+AGG | - | chr5.2:7876668-7876687 | MS.gene09558:intron | 40.0% |
| ! | GCTCTGGTGATAGTGATAAA+TGG | - | chr5.2:7877354-7877373 | MS.gene09558:CDS | 40.0% |
| ! | GTCACAACTGTGTTTGCTAA+GGG | - | chr5.2:7876080-7876099 | MS.gene09558:intron | 40.0% |
| ! | GTGTCGAGACACTAAGTTTT+AGG | - | chr5.2:7874895-7874914 | MS.gene09558:intron | 40.0% |
| ! | TGATTCAGCTTTTGTCAGCA+AGG | - | chr5.2:7874276-7874295 | MS.gene09558:intron | 40.0% |
| ! | TGTCACAACTGTGTTTGCTA+AGG | - | chr5.2:7876079-7876098 | MS.gene09558:intron | 40.0% |
| !! | GATGGTGTTGATGTTCTTGT+TGG | - | chr5.2:7875713-7875732 | MS.gene09558:intron | 40.0% |
| !! | GCCGAACCCAAATTTTAACA+TGG | + | chr5.2:7876857-7876876 | None:intergenic | 40.0% |
| !! | GGGCCTTATTTAATCAAACG+TGG | - | chr5.2:7876936-7876955 | MS.gene09558:intron | 40.0% |
| !! | GTGTTTGCTAAGGGCTTTTA+TGG | - | chr5.2:7876089-7876108 | MS.gene09558:intron | 40.0% |
| !! | TAATGGCCTTGTTCCTCTTT+GGG | - | chr5.2:7874454-7874473 | MS.gene09558:intron | 40.0% |
| !! | TACCAAAGGGACTAGTTTCA+AGG | - | chr5.2:7877132-7877151 | MS.gene09558:CDS | 40.0% |
| !! | TAGGGAGTGCTATTGCTATT+AGG | - | chr5.2:7874423-7874442 | MS.gene09558:intron | 40.0% |
| !!! | CCTTACAAGCCACTTTTGTA+AGG | + | chr5.2:7876671-7876690 | None:intergenic | 40.0% |
| !!! | TTCTTTTCCTCTGAAGTGAG+TGG | - | chr5.2:7877393-7877412 | MS.gene09558:CDS | 40.0% |
| AAAGGAGACAACTAGCGCAA+TGG | + | chr5.2:7876045-7876064 | None:intergenic | 45.0% | |
| AATAAGGCCCGAAATGTGAG+TGG | + | chr5.2:7876926-7876945 | None:intergenic | 45.0% | |
| ACACCTCTCATGCTTAGTGT+TGG | - | chr5.2:7876757-7876776 | MS.gene09558:intron | 45.0% | |
| ACCTTACAAGCCAGTTTGGT+AGG | + | chr5.2:7876891-7876910 | None:intergenic | 45.0% | |
| AGAACAATCCTTGCCCAAGT+AGG | + | chr5.2:7874353-7874372 | None:intergenic | 45.0% | |
| AGATCTCCTTCCAAGTTTCC+AGG | + | chr5.2:7874188-7874207 | None:intergenic | 45.0% | |
| ATCAAGCCTGAGAAGCAAGA+TGG | + | chr5.2:7877010-7877029 | None:intergenic | 45.0% | |
| ATGAGTATCCTACTTGGGCA+AGG | - | chr5.2:7874342-7874361 | MS.gene09558:intron | 45.0% | |
| ATGTCCACCACTCACATTTC+GGG | - | chr5.2:7876916-7876935 | MS.gene09558:intron | 45.0% | |
| CAAACGTGGGACTCTTAACT+AGG | - | chr5.2:7876950-7876969 | MS.gene09558:intron | 45.0% | |
| CAACAAGCTGTTGGAGTTGT+TGG | - | chr5.2:7875900-7875919 | MS.gene09558:CDS | 45.0% | |
| CAATTCAACCCCTACCAAAC+TGG | - | chr5.2:7876878-7876897 | MS.gene09558:intron | 45.0% | |
| CAGTACCTTCAGGAGAAGTA+TGG | - | chr5.2:7876152-7876171 | MS.gene09558:intron | 45.0% | |
| CAGTTTGGTAGGGGTTGAAT+TGG | + | chr5.2:7876880-7876899 | None:intergenic | 45.0% | |
| CCTATTCCATCTTGCTTCTC+AGG | - | chr5.2:7877001-7877020 | MS.gene09558:intron | 45.0% | |
| CCTGAGAAGCAAGATGGAAT+AGG | + | chr5.2:7877004-7877023 | None:intergenic | 45.0% | |
| CCTTACAAGCCAGTTTGGTA+GGG | + | chr5.2:7876890-7876909 | None:intergenic | 45.0% | |
| CGCTGTTATGGCTTCTTATG+TGG | - | chr5.2:7874234-7874253 | MS.gene09558:intron | 45.0% | |
| CTATGGTTATTCAGTGGACC+AGG | - | chr5.2:7874134-7874153 | MS.gene09558:CDS | 45.0% | |
| CTTACAAGCCAGTTTGGTAG+GGG | + | chr5.2:7876889-7876908 | None:intergenic | 45.0% | |
| CTTCAATCTGGTGCAATTGC+TGG | - | chr5.2:7874206-7874225 | MS.gene09558:intron | 45.0% | |
| CTTGGGCAAGGATTGTTCTT+TGG | - | chr5.2:7874354-7874373 | MS.gene09558:intron | 45.0% | |
| GCCCAATAAGCTGACATCAT+AGG | + | chr5.2:7874694-7874713 | None:intergenic | 45.0% | |
| GGGGTAGGGAACATAAAAAG+AGG | + | chr5.2:7877158-7877177 | None:intergenic | 45.0% | |
| GGTCAGAGTAGCACTATTAC+TGG | - | chr5.2:7876227-7876246 | MS.gene09558:intron | 45.0% | |
| GTATTCTTCCCAATCCCAAC+AGG | + | chr5.2:7875405-7875424 | None:intergenic | 45.0% | |
| GTCCAATCTCCAATGGATCT+TGG | - | chr5.2:7876818-7876837 | MS.gene09558:intron | 45.0% | |
| TATGAAGCATGAGCACACCT+AGG | + | chr5.2:7875806-7875825 | None:intergenic | 45.0% | |
| TGTCCAACACTAAGCATGAG+AGG | + | chr5.2:7876763-7876782 | None:intergenic | 45.0% | |
| TTCGTAGGCTTCTTCTTCGT+CGG | + | chr5.2:7874066-7874085 | None:intergenic | 45.0% | |
| TTGCTGGGTATTCGCTGTTA+TGG | - | chr5.2:7874222-7874241 | MS.gene09558:intron | 45.0% | |
| TTGGATCCTGGAAACTTGGA+AGG | - | chr5.2:7874179-7874198 | MS.gene09558:intron | 45.0% | |
| TTTGGTGAAGCAAAGCCAGA+TGG | - | chr5.2:7875695-7875714 | MS.gene09558:intron | 45.0% | |
| ! | AGGATCGGTCTTGTAAATGC+AGG | - | chr5.2:7876128-7876147 | MS.gene09558:intron | 45.0% |
| ! | ATGGCTTCTTATGTGGGCTA+CGG | - | chr5.2:7874241-7874260 | MS.gene09558:intron | 45.0% |
| ! | CAGCTTTTGTCAGCAAGGTT+AGG | - | chr5.2:7874281-7874300 | MS.gene09558:intron | 45.0% |
| ! | CAGGTTGACCCCAAAAAGAA+AGG | - | chr5.2:7875978-7875997 | MS.gene09558:intron | 45.0% |
| ! | CATGCTTAGTGTTGGACATC+TGG | - | chr5.2:7876765-7876784 | MS.gene09558:intron | 45.0% |
| ! | GGATCGGTCTTGTAAATGCA+GGG | - | chr5.2:7876129-7876148 | MS.gene09558:intron | 45.0% |
| ! | TACCCGAATAGCTTGATAGC+GGG | - | chr5.2:7876793-7876812 | MS.gene09558:intron | 45.0% |
| ! | TACCTTCAGGAGAAGTATGG+AGG | - | chr5.2:7876155-7876174 | MS.gene09558:intron | 45.0% |
| ! | TGAACGCGGCCTTTCTTTTT+GGG | + | chr5.2:7875990-7876009 | None:intergenic | 45.0% |
| ! | TTGAACGCGGCCTTTCTTTT+TGG | + | chr5.2:7875991-7876010 | None:intergenic | 45.0% |
| !! | AGCAAGGTTAGGTGTTGCTA+CGG | - | chr5.2:7874292-7874311 | MS.gene09558:intron | 45.0% |
| !! | GTAATGGCCTTGTTCCTCTT+TGG | - | chr5.2:7874453-7874472 | MS.gene09558:intron | 45.0% |
| !! | AAATTTAATCATTATTAATT+AGG | - | chr5.2:7877222-7877241 | MS.gene09558:CDS | 5.0% |
| AAATGCAGGGCAGTACCTTC+AGG | - | chr5.2:7876142-7876161 | MS.gene09558:intron | 50.0% | |
| ATGACAACACCAGCCCAAAG+AGG | + | chr5.2:7874470-7874489 | None:intergenic | 50.0% | |
| CACCCGCTATCAAGCTATTC+GGG | + | chr5.2:7876798-7876817 | None:intergenic | 50.0% | |
| CCACCCGCTATCAAGCTATT+CGG | + | chr5.2:7876799-7876818 | None:intergenic | 50.0% | |
| CCATATGGCCCTACCAGTTT+AGG | - | chr5.2:7874920-7874939 | MS.gene09558:intron | 50.0% | |
| CCTAAACTGGTAGGGCCATA+TGG | + | chr5.2:7874923-7874942 | None:intergenic | 50.0% | |
| CCTCACCTTACAAGCCAGTT+TGG | + | chr5.2:7876895-7876914 | None:intergenic | 50.0% | |
| GCTGGACAATTCATCATGGG+TGG | - | chr5.2:7876257-7876276 | MS.gene09558:intron | 50.0% | |
| GGCCTTGAAACTAGTCCCTT+TGG | + | chr5.2:7877137-7877156 | None:intergenic | 50.0% | |
| TGCTCTTGTTCAATCCAGGC+AGG | - | chr5.2:7875959-7875978 | MS.gene09558:intron | 50.0% | |
| TGTTGCTACGGGGAGACATT+TGG | - | chr5.2:7874304-7874323 | MS.gene09558:intron | 50.0% | |
| ! | ACAGACCATTTCCTGGCTTG+TGG | - | chr5.2:7877329-7877348 | MS.gene09558:CDS | 50.0% |
| ! | CTTATGTGGGCTACGGCTAT+GGG | - | chr5.2:7874248-7874267 | MS.gene09558:intron | 50.0% |
| ! | CTTCAGGAGAAGTATGGAGG+CGG | - | chr5.2:7876158-7876177 | MS.gene09558:intron | 50.0% |
| ! | GAACGCGGCCTTTCTTTTTG+GGG | + | chr5.2:7875989-7876008 | None:intergenic | 50.0% |
| ! | GCTCCGTTACGTTTTCACCT+TGG | - | chr5.2:7877487-7877506 | MS.gene09558:CDS | 50.0% |
| ! | GGTATTGGGTTACTAGCAGC+TGG | - | chr5.2:7876206-7876225 | MS.gene09558:intron | 50.0% |
| ! | TCTTATGTGGGCTACGGCTA+TGG | - | chr5.2:7874247-7874266 | MS.gene09558:intron | 50.0% |
| ! | TTATGTGGGCTACGGCTATG+GGG | - | chr5.2:7874249-7874268 | MS.gene09558:intron | 50.0% |
| !! | CAAGATTGGCTCTGTCCTCA+AGG | - | chr5.2:7876496-7876515 | MS.gene09558:intron | 50.0% |
| !! | CAAGGTTAGGTGTTGCTACG+GGG | - | chr5.2:7874294-7874313 | MS.gene09558:intron | 50.0% |
| !! | CCAAACTGGCTTGTAAGGTG+AGG | - | chr5.2:7876892-7876911 | MS.gene09558:intron | 50.0% |
| !! | CCCTACCAAACTGGCTTGTA+AGG | - | chr5.2:7876887-7876906 | MS.gene09558:intron | 50.0% |
| !! | GCAAGGTTAGGTGTTGCTAC+GGG | - | chr5.2:7874293-7874312 | MS.gene09558:intron | 50.0% |
| !! | GGATGAGGGCGTTGATTACT+CGG | - | chr5.2:7876306-7876325 | MS.gene09558:intron | 50.0% |
| !! | TAGCGCAATGGTGGACTCTA+TGG | + | chr5.2:7876033-7876052 | None:intergenic | 50.0% |
| AAGGCCCGAAATGTGAGTGG+TGG | + | chr5.2:7876923-7876942 | None:intergenic | 55.0% | |
| AGAAGCCTACGAAGCTGACG+TGG | - | chr5.2:7874073-7874092 | MS.gene09558:CDS | 55.0% | |
| AGAGTCCACGTCAGCTTCGT+AGG | + | chr5.2:7874081-7874100 | None:intergenic | 55.0% | |
| AGCAGCCACAAGCCAGGAAA+TGG | + | chr5.2:7877337-7877356 | None:intergenic | 55.0% | |
| CACCAGCCCAAAGAGGAACA+AGG | + | chr5.2:7874463-7874482 | None:intergenic | 55.0% | |
| CACTGCTCCACTCACTTCAG+AGG | + | chr5.2:7877403-7877422 | None:intergenic | 55.0% | |
| CGCCTCCATACTTCTCCTGA+AGG | + | chr5.2:7876160-7876179 | None:intergenic | 55.0% | |
| GGAGACAACTAGCGCAATGG+TGG | + | chr5.2:7876042-7876061 | None:intergenic | 55.0% | |
| TACGAAGCTGACGTGGACTC+TGG | - | chr5.2:7874080-7874099 | MS.gene09558:CDS | 55.0% | |
| !! | CCGAATAGCTTGATAGCGGG+TGG | - | chr5.2:7876796-7876815 | MS.gene09558:intron | 55.0% |
| !!! | CTTTTTGGGGTCAACCTGCC+TGG | + | chr5.2:7875976-7875995 | None:intergenic | 55.0% |
| GCGGGTGGTCCAATCTCCAA+TGG | - | chr5.2:7876811-7876830 | MS.gene09558:intron | 60.0% | |
| ! | TTCCTGGCTTGTGGCTGCTC+TGG | - | chr5.2:7877338-7877357 | MS.gene09558:CDS | 60.0% |
| !! | GGCCTTGTTCCTCTTTGGGC+TGG | - | chr5.2:7874458-7874477 | MS.gene09558:intron | 60.0% |
| CACCAGAGCAGCCACAAGCC+AGG | + | chr5.2:7877343-7877362 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 7873972 | 7877554 | 7873972 | ID=MS.gene09558 |
| chr5.2 | mRNA | 7873972 | 7877554 | 7873972 | ID=MS.gene09558.t1;Parent=MS.gene09558 |
| chr5.2 | exon | 7877022 | 7877554 | 7877022 | ID=MS.gene09558.t1.exon1;Parent=MS.gene09558.t1 |
| chr5.2 | CDS | 7877022 | 7877554 | 7877022 | ID=cds.MS.gene09558.t1;Parent=MS.gene09558.t1 |
| chr5.2 | exon | 7875792 | 7875928 | 7875792 | ID=MS.gene09558.t1.exon2;Parent=MS.gene09558.t1 |
| chr5.2 | CDS | 7875792 | 7875928 | 7875792 | ID=cds.MS.gene09558.t1;Parent=MS.gene09558.t1 |
| chr5.2 | exon | 7875009 | 7875661 | 7875009 | ID=MS.gene09558.t1.exon3;Parent=MS.gene09558.t1 |
| chr5.2 | CDS | 7875009 | 7875661 | 7875009 | ID=cds.MS.gene09558.t1;Parent=MS.gene09558.t1 |
| chr5.2 | exon | 7873972 | 7874193 | 7873972 | ID=MS.gene09558.t1.exon4;Parent=MS.gene09558.t1 |
| chr5.2 | CDS | 7873972 | 7874193 | 7873972 | ID=cds.MS.gene09558.t1;Parent=MS.gene09558.t1 |
| Gene Sequence |
| Protein sequence |
